Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 174 of 290
Found at i:59693407 original size:24 final size:24
Alignment explanation
Indices: 59693380--59693431 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
59693370 AAAAATAACC
59693380 AAAACATAAATAAAAAGGACCAAG
1 AAAACATAAATAAAAAGGACCAAG
59693404 AAAACATAAATAAAAAGGACCAAG
1 AAAACATAAATAAAAAGGACCAAG
59693428 AAAA
1 AAAA
59693432 ACTAACTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.69, C:0.12, G:0.12, T:0.08
Consensus pattern (24 bp):
AAAACATAAATAAAAAGGACCAAG
Found at i:59698391 original size:18 final size:18
Alignment explanation
Indices: 59698368--59698402 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
59698358 CAAGAATAGG
59698368 AAGCATCAAAATGGTTTC
1 AAGCATCAAAATGGTTTC
* *
59698386 AAGCATTAAAATTGTTT
1 AAGCATCAAAATGGTTT
59698403 GGCACATTGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.34
Consensus pattern (18 bp):
AAGCATCAAAATGGTTTC
Found at i:59702364 original size:20 final size:18
Alignment explanation
Indices: 59702327--59702368 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 18
59702317 TCATTTCATC
59702327 TCAAGATTTTCATGCCAT
1 TCAAGATTTTCATGCCAT
59702345 GTCAAGAGTTTTC-TGTCCAT
1 -TCAAGA-TTTTCATG-CCAT
59702365 TCAA
1 TCAA
59702369 TCATTGAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.38
Consensus pattern (18 bp):
TCAAGATTTTCATGCCAT
Found at i:59703218 original size:20 final size:20
Alignment explanation
Indices: 59703189--59703233 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
59703179 AGCACATGTA
*
59703189 TTCATAAAATTTTAGAAATT
1 TTCATAAAATTTTACAAATT
* *
59703209 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAAATT
59703229 TTCAT
1 TTCAT
59703234 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.47
Consensus pattern (20 bp):
TTCATAAAATTTTACAAATT
Found at i:59705363 original size:27 final size:26
Alignment explanation
Indices: 59705328--59705439 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
59705318 AGCATGGCTG
** *
59705328 CCAGAACAGATAATGTAACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
59705354 CCAGATACAGATAATCATGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
59705382 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
59705409 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
59705436 CCAG
1 CCAG
59705440 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.71
28 15 0.21
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:59705393 original size:54 final size:54
Alignment explanation
Indices: 59705328--59705439 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
59705318 AGCATGGCTG
*
59705328 CCAGAACAGATA-ATGTAACAGAGTCACCAGATACAGATAATCATGGCAGAGCCA
1 CCAGAACAGATATATGTAACAGAGCCACCAGAT-CAGATAATCATGGCAGAGCCA
* ** ** *
59705382 CCAGAATAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTAACAGAGCCACCAGATCAGATAATCATGGCAGAGCCA
59705436 CCAG
1 CCAG
59705440 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTAACAGAGCCACCAGATCAGATAATCATGGCAGAGCCA
Found at i:59707238 original size:11 final size:11
Alignment explanation
Indices: 59707222--59707277 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
59707212 CAATAGTGAT
59707222 ATGATATGCAC
1 ATGATATGCAC
*
59707233 ATGATATG--T
1 ATGATATGCAC
59707242 ATGATATGCAC
1 ATGATATGCAC
*
59707253 ATGATATG--T
1 ATGATATGCAC
59707262 ATGATATGCAC
1 ATGATATGCAC
59707273 ATGAT
1 ATGAT
59707278 GTATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:59707246 original size:20 final size:20
Alignment explanation
Indices: 59707221--59707277 Score: 114
Period size: 20 Copynumber: 2.9 Consensus size: 20
59707211 ACAATAGTGA
59707221 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
59707241 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
59707261 TATGATATGCACATGAT
1 TATGATATGCACATGAT
59707278 GTATTCATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:59707356 original size:26 final size:26
Alignment explanation
Indices: 59707327--59707399 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
59707317 GAGGAAGTGC
59707327 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
59707353 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
59707379 AAGAGGGCTTATGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
59707400 ATTAAAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:59707408 original size:26 final size:26
Alignment explanation
Indices: 59707330--59707426 Score: 69
Period size: 26 Copynumber: 3.8 Consensus size: 26
59707320 GAAGTGCAAA
***
59707330 AGGGCTTATGCCCCAGTTTACCGAAA-
1 AGGGCTTATGCCCCAG-TTATTAAAAG
* *
59707356 AGGGCTTATGCCCTAG-T-TTACCGAAG
1 AGGGCTTATGCCCCAGTTATTA--AAAG
59707382 AGGGCTTATGCCCCAGTTATTAAAAG
1 AGGGCTTATGCCCCAGTTATTAAAAG
*
59707408 A-GGC-TAGGCCTCCAGTTAT
1 AGGGCTTATGCC-CCAGTTAT
59707427 ATGATAAAGC
Statistics
Matches: 57, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
24 6 0.11
25 13 0.23
26 34 0.60
27 1 0.02
28 3 0.05
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (26 bp):
AGGGCTTATGCCCCAGTTATTAAAAG
Found at i:59712846 original size:46 final size:45
Alignment explanation
Indices: 59712777--59712952 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
59712767 TATTTGGGCA
59712777 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
59712823 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
59712870 TCCGAGCTTGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
59712916 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59712953 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.62
47 29 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:59712932 original size:93 final size:93
Alignment explanation
Indices: 59712773--59712945 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
59712763 GGGATATTTG
* * **
59712773 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
59712838 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
59712866 GGCATCCGAGCTTGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
59712931 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
59712946 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:59718028 original size:11 final size:11
Alignment explanation
Indices: 59718014--59718069 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
59718004 CAATATTGAT
59718014 ATGATATGCAC
1 ATGATATGCAC
*
59718025 ATGATATGTAC
1 ATGATATGCAC
59718036 --GATATGCAC
1 ATGATATGCAC
*
59718045 ATGATATG--T
1 ATGATATGCAC
59718054 ATGATATGCAC
1 ATGATATGCAC
59718065 ATGAT
1 ATGAT
59718070 GTATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:59718041 original size:20 final size:20
Alignment explanation
Indices: 59718016--59718069 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
59718006 ATATTGATAT
59718016 GATATGCACATGATATGTAC
1 GATATGCACATGATATGTAC
*
59718036 GATATGCACATGATATGTAT
1 GATATGCACATGATATGTAC
59718056 GATATGCACATGAT
1 GATATGCACATGAT
59718070 GTATTCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (20 bp):
GATATGCACATGATATGTAC
Found at i:59718190 original size:25 final size:26
Alignment explanation
Indices: 59718119--59718190 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 26
59718109 GAGGAAGTGC
*
59718119 AAAAGGGCTTCTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
59718145 AAAAGTGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
59718171 AAAAGGGC-TATGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
59718191 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 11 0.27
26 30 0.73
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:59719312 original size:28 final size:26
Alignment explanation
Indices: 59719250--59719312 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
59719240 AAAGTCCCTC
** *
59719250 TAGGGGTATAATGGTAATTTTACACC
1 TAGGGGTATAACAGTAATTTTACACA
*
59719276 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTT--ACACA
59719304 TAGGGGTAT
1 TAGGGGTAT
59719313 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 19 0.61
28 12 0.39
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTACACA
Found at i:59727671 original size:50 final size:49
Alignment explanation
Indices: 59727504--59727728 Score: 297
Period size: 49 Copynumber: 4.5 Consensus size: 49
59727494 CTGGTACGCA
* * *
59727504 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
59727553 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
59727602 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * ** * *
59727652 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
*
59727703 TAGTAGCCTACACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
59727729 TGCGACCTCA
Statistics
Matches: 156, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 79 0.51
50 43 0.28
51 33 0.21
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:59727675 original size:99 final size:100
Alignment explanation
Indices: 59727491--59727735 Score: 314
Period size: 99 Copynumber: 2.5 Consensus size: 100
59727481 TAGCCAAAGC
* * * * ** *
59727491 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
59727556 TAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
66 TAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * *
59727589 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTA
*
59727654 GTAGCCTGCACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* ** * * *
59727690 TTTTGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
59727736 TCACAATAGA
Statistics
Matches: 125, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
98 40 0.32
99 43 0.34
100 1 0.01
101 41 0.33
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (100 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCACAAT
Found at i:59731087 original size:39 final size:39
Alignment explanation
Indices: 59730918--59731070 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
59730908 AAAGGGCTTC
* *
59730918 GCGAGGATTATATCCGGACTTCAGGTCCACAGGCTATAT
1 GCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAT
* *
59730957 GCGAGAATTATATTCGGACTTCAGGTCCGAAGGCTATAT
1 GCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAT
* *
59730996 GCGAGAATTATATCCGGACTTCATGTCCGTAGGCTATAT
1 GCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAT
*
59731035 GCGAGAATTATATCCGGACTTTAGGTCCGCAGGCTA
1 GCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTA
59731071 CGTGCTGGAC
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 104 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (39 bp):
GCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAT
Found at i:59739177 original size:39 final size:39
Alignment explanation
Indices: 59739118--59739236 Score: 166
Period size: 39 Copynumber: 3.1 Consensus size: 39
59739108 TGTGAATATA
59739118 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* * * *
59739157 TATAAGCGAGAATTATATCCGGACTTCATGTCGGCAAGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* * * *
59739196 TGTATGCGAGAATTAGATCCGGACTTTAGGTCTGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
59739235 TA
1 TA
59739237 CGTGCTGGAC
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:59741569 original size:27 final size:27
Alignment explanation
Indices: 59741539--59741645 Score: 112
Period size: 27 Copynumber: 3.9 Consensus size: 27
59741529 GGCTGCTAGA
*
59741539 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGTCACCAGAT
*
59741566 ACAGATAATCGTGGCAGA-TCCACCA-AA
1 ACAGATAAT-GTGGCAGAGT-CACCAGAT
*
59741593 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGTCACCAGAT
* *
59741621 -CAGATAATTGTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGTCACCAG
59741646 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
26 1 0.01
27 53 0.77
28 15 0.22
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.18
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGTCACCAGAT
Found at i:59741628 original size:54 final size:54
Alignment explanation
Indices: 59741538--59741644 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
59741528 TGGCTGCTAG
* *
59741538 AACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGATCCACCAA
1 AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAA
* * *
59741592 AACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCA
1 AACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCA
59741645 GGACGCTTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 29 0.62
55 18 0.38
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.18
Consensus pattern (54 bp):
AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAA
Found at i:59745853 original size:12 final size:12
Alignment explanation
Indices: 59745836--59745862 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
59745826 ATACATGCCT
59745836 GTGTGCTAGGCC
1 GTGTGCTAGGCC
59745848 GTGTGCTAGGCC
1 GTGTGCTAGGCC
59745860 GTG
1 GTG
59745863 CCAAACCAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.22, G:0.44, T:0.26
Consensus pattern (12 bp):
GTGTGCTAGGCC
Found at i:59747327 original size:43 final size:43
Alignment explanation
Indices: 59747270--59747353 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
59747260 GGTATGTAGC
* * *
59747270 ATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCGAGA
1 ATCCAAGCTCGTTGAGAGGTCCAAGTTCATGATGGATGCGAGA
*
59747313 ATCCAAGCTCGTTGAGTGGTCCAAGTTCATGATGGATGCGA
1 ATCCAAGCTCGTTGAGAGGTCCAAGTTCATGATGGATGCGA
59747354 TTCACATAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (43 bp):
ATCCAAGCTCGTTGAGAGGTCCAAGTTCATGATGGATGCGAGA
Found at i:59751672 original size:43 final size:43
Alignment explanation
Indices: 59751535--59751707 Score: 192
Period size: 43 Copynumber: 4.0 Consensus size: 43
59751525 GACATAGGAT
* *
59751535 TCGATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCA
* * * * **
59751578 TCGACT-TATGATTTACGTGTAAGACCATGTCTGGGACATCAGCA
1 TCGA-TATTTGATTT-CATGTAAGACCACGTCTGGGACGTTGGCA
*
59751622 TCG-TATTTGATTTCATGTAAGAACC-TGTCTGGGACAG-TGGCA
1 TCGATATTTGATTTCATGTAAG-ACCACGTCTGGGAC-GTTGGCA
*
59751664 TCGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCA
59751707 T
1 T
59751708 TGTACGAGCT
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
42 28 0.26
43 52 0.48
44 28 0.26
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TCGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCA
Found at i:59752262 original size:23 final size:24
Alignment explanation
Indices: 59752236--59752281 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
59752226 AGCCATGTGA
* *
59752236 TATGGCTTGGTTTTGGT-TATGAT
1 TATGGCTTGATTTTCGTATATGAT
*
59752259 TATGGTTTGATTTTCGTATATGA
1 TATGGCTTGATTTTCGTATATGA
59752282 AATGTGATGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.17, C:0.04, G:0.26, T:0.52
Consensus pattern (24 bp):
TATGGCTTGATTTTCGTATATGAT
Found at i:59754222 original size:10 final size:10
Alignment explanation
Indices: 59754207--59754253 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
59754197 GAACATGTTG
59754207 AATTTTAATT
1 AATTTTAATT
59754217 AATTTTATAATT
1 AA-TTT-TAATT
*
59754229 AATTTTTATT
1 AATTTTAATT
*
59754239 AATTTTGATT
1 AATTTTAATT
59754249 -ATTTT
1 AATTTT
59754254 TGATAGAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 5 0.15
10 15 0.45
11 6 0.18
12 7 0.21
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (10 bp):
AATTTTAATT
Found at i:59754229 original size:12 final size:11
Alignment explanation
Indices: 59754209--59754244 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
59754199 ACATGTTGAA
59754209 TTTTAATTAAT
1 TTTTAATTAAT
59754220 TTTATAATTAAT
1 TTT-TAATTAAT
59754232 TTTT-ATTAAT
1 TTTTAATTAAT
59754242 TTT
1 TTT
59754245 GATTATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 9 0.38
11 4 0.17
12 11 0.46
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTAATTAAT
Found at i:59755199 original size:55 final size:55
Alignment explanation
Indices: 59755115--59755220 Score: 185
Period size: 55 Copynumber: 1.9 Consensus size: 55
59755105 CATATAAATC
* *
59755115 ATGACTTCTAATTATCTCTAGTTAATTTATGGTGAATTTCCAAATTCAGAACAGG
1 ATGACTTCCAATTATCTCTAGTTAATTTATGGTGAATTTCCAAAGTCAGAACAGG
*
59755170 ATGACTTCCAATTATCTCTGGTTAATTTATGGTGAATTTCCAAAGTCAGAA
1 ATGACTTCCAATTATCTCTAGTTAATTTATGGTGAATTTCCAAAGTCAGAA
59755221 TAGGGGATCC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (55 bp):
ATGACTTCCAATTATCTCTAGTTAATTTATGGTGAATTTCCAAAGTCAGAACAGG
Found at i:59756450 original size:41 final size:41
Alignment explanation
Indices: 59756393--59756546 Score: 161
Period size: 41 Copynumber: 3.8 Consensus size: 41
59756383 TTAGCGCTGA
*
59756393 CTCAAGAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGG
1 CTCAA-AAGCCCTTCGAGACCAAGCTCGGATTATGACACTGG
** * * * *
59756435 C-CCGAAGTCCCTTCGA-AACTAGTTTCGG-TTATGACACTAG
1 CTCAAAAG-CCCTTCGAGACCAAG-CTCGGATTATGACACTGG
* *
59756475 CTCAAAAGCCCTTTGAGACCAAGCTCAGATTATGACACTGG
1 CTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGG
* *
59756516 CTCAAAAGCTCTTTGAGACCAAGCTCGGATT
1 CTCAAAAGCCCTTCGAGACCAAGCTCGGATT
59756547 TAAACCCCGA
Statistics
Matches: 90, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
40 28 0.31
41 61 0.68
42 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (41 bp):
CTCAAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGG
Found at i:59763623 original size:40 final size:40
Alignment explanation
Indices: 59763561--59764434 Score: 1637
Period size: 40 Copynumber: 21.9 Consensus size: 40
59763551 AGCATTTGAA
* *
59763561 TGATAT-TC-GGGCTAAGTCCCGAAGGCATTTGTGCTAG-
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
* *
59763598 TGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGA-TATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59763639 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59763679 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59763719 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59763759 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59763799 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59763839 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59763879 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59763919 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59763959 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59763999 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59764039 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59764079 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59764119 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59764159 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59764199 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59764239 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59764279 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59764319 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
59764359 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
* * * * *
59764399 TGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGC
59764435 TTGTGGTTAT
Statistics
Matches: 823, Mismatches: 10, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
37 3 0.00
38 2 0.00
39 2 0.00
40 813 0.99
41 3 0.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (40 bp):
TGATATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGT
Found at i:59772716 original size:40 final size:40
Alignment explanation
Indices: 59772657--59773568 Score: 1657
Period size: 40 Copynumber: 22.8 Consensus size: 40
59772647 CATTTGAATG
* * * *
59772657 ATATCCGGGCTATGTCCCGAAGGCATTTGTGCTAG-TGATT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* * * *
59772697 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGATT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* *
59772737 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59772777 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59772817 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59772857 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59772897 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59772937 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59772977 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59773017 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59773057 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59773097 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59773137 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59773177 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59773217 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59773257 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59773297 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59773337 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59773377 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59773417 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
59773457 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
59773497 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * * *
59773537 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGC
59773569 TTGTGGTTAT
Statistics
Matches: 858, Mismatches: 13, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
40 855 1.00
41 3 0.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.28
Consensus pattern (40 bp):
ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:59779418 original size:46 final size:46
Alignment explanation
Indices: 59779368--59779543 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
59779358 TATTTGGGCA
*
59779368 TCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
*** * * *
59779414 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATACGAATG
* *
59779459 CATCCGACCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
* **
59779507 CCCGGGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59779544 GCGTGTTACA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 2 0.02
46 69 0.64
47 34 0.32
48 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
Found at i:59779523 original size:93 final size:93
Alignment explanation
Indices: 59779364--59779535 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
59779354 AGGATATTTG
* *
59779364 GGCATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATACGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAACTCGTTGAG
59779429 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * **
59779457 GGCATCCGACCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGGGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAACTCGTTGAG
59779522 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
59779536 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:59784832 original size:129 final size:129
Alignment explanation
Indices: 59784602--59784860 Score: 509
Period size: 129 Copynumber: 2.0 Consensus size: 129
59784592 GTTTTTAAAC
*
59784602 CTGGGATATACATTCCTAAGTTAACGTCAAGCCAAGCAAGAGGAAGCTTCGTTTTTGACCTCGGA
1 CTGGGATATACATTCCTAAGTTAACGTCAAGCCAAGCAAGAGGAAGCTTCGTTTTTGACCCCGGA
59784667 GATTATTATTCTTTGTTCTTGTTAAAAGGGTTTGGATTTTGCAATTTTGACTTTCGAGATTATG
66 GATTATTATTCTTTGTTCTTGTTAAAAGGGTTTGGATTTTGCAATTTTGACTTTCGAGATTATG
59784731 CTGGGATATACATTCCTAAGTTAACGTCAAGCCAAGCAAGAGGAAGCTTCGTTTTTGACCCCGGA
1 CTGGGATATACATTCCTAAGTTAACGTCAAGCCAAGCAAGAGGAAGCTTCGTTTTTGACCCCGGA
59784796 GATTATTATTCTTTGTTCTTGTTAAAAGGGTTTGGATTTTGCAATTTTGACTTTCGAGATTATG
66 GATTATTATTCTTTGTTCTTGTTAAAAGGGTTTGGATTTTGCAATTTTGACTTTCGAGATTATG
59784860 C
1 C
59784861 CTTTCGACTG
Statistics
Matches: 129, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
129 129 1.00
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.37
Consensus pattern (129 bp):
CTGGGATATACATTCCTAAGTTAACGTCAAGCCAAGCAAGAGGAAGCTTCGTTTTTGACCCCGGA
GATTATTATTCTTTGTTCTTGTTAAAAGGGTTTGGATTTTGCAATTTTGACTTTCGAGATTATG
Found at i:59785399 original size:20 final size:20
Alignment explanation
Indices: 59785374--59785428 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
59785364 TGTGGTTCAA
*
59785374 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
59785394 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
59785414 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
59785429 TTTAACTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:59789056 original size:84 final size:83
Alignment explanation
Indices: 59788890--59789049 Score: 266
Period size: 84 Copynumber: 1.9 Consensus size: 83
59788880 TATTAATTAG
*
59788890 GGTTAATTTTTAAGTTTTATAATAAGGTTAGGATTAGTTTGAGGCCTATAGAAGTGATGGTCGGC
1 GGTTAATTTTTAAGTTTTATAATAAGGTTAGGATTAGTTTGAGGCCTATAGAAGTGATGGCCGGC
*
59788955 CACCCCTTGTACACACTA
66 CACCCATTGTACACACTA
* * *
59788973 GGTTAATTTTTTAAGTTTTCTAGTAAGGTTAGGATTAGTTTGAGGCCTATATAAGTGATGGCCGG
1 GGTTAA-TTTTTAAGTTTTATAATAAGGTTAGGATTAGTTTGAGGCCTATAGAAGTGATGGCCGG
59789038 CCACCCATTGTA
65 CCACCCATTGTA
59789050 TTCACTATCA
Statistics
Matches: 71, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
83 6 0.08
84 65 0.92
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (83 bp):
GGTTAATTTTTAAGTTTTATAATAAGGTTAGGATTAGTTTGAGGCCTATAGAAGTGATGGCCGGC
CACCCATTGTACACACTA
Found at i:59791119 original size:70 final size:70
Alignment explanation
Indices: 59791006--59791144 Score: 251
Period size: 70 Copynumber: 2.0 Consensus size: 70
59790996 ATTATTTGGG
*
59791006 GTTAATTTTTAAGTTTTATAATAAGGTTAGGATTAGTTTGAGGCCTATAGAAGTGATGGTCGGCC
1 GTTAATTTTTAAGTTTTATAATAAGGTTAGGATTAGTTTGAGGCCTATAGAAGTGATGGCCGGCC
59791071 ACCCA
66 ACCCA
* *
59791076 GTTAATTTTTAAGTTTTCTAATAAGGTTAGGATTAGTTTGAGGCCTATATAAGTGATGGCCGGCC
1 GTTAATTTTTAAGTTTTATAATAAGGTTAGGATTAGTTTGAGGCCTATAGAAGTGATGGCCGGCC
59791141 ACCC
66 ACCC
59791145 TTTGTATTCA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (70 bp):
GTTAATTTTTAAGTTTTATAATAAGGTTAGGATTAGTTTGAGGCCTATAGAAGTGATGGCCGGCC
ACCCA
Found at i:59791434 original size:59 final size:59
Alignment explanation
Indices: 59791342--59791459 Score: 218
Period size: 59 Copynumber: 2.0 Consensus size: 59
59791332 TTTGAAGAGA
59791342 TTTGTAAAGTCTTTCGGGATTTCAAGGATCCTGAGGACTTTATCTTGATTTTTATTGCT
1 TTTGTAAAGTCTTTCGGGATTTCAAGGATCCTGAGGACTTTATCTTGATTTTTATTGCT
* *
59791401 TTTGTGAAGTCTTTCGGGATTTCAAGGATCCTGAGGACTTTATCTTGATTTTTGTTGCT
1 TTTGTAAAGTCTTTCGGGATTTCAAGGATCCTGAGGACTTTATCTTGATTTTTATTGCT
59791460 GTTCGTTCTT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.19, C:0.14, G:0.22, T:0.46
Consensus pattern (59 bp):
TTTGTAAAGTCTTTCGGGATTTCAAGGATCCTGAGGACTTTATCTTGATTTTTATTGCT
Found at i:59813441 original size:54 final size:54
Alignment explanation
Indices: 59813377--59813487 Score: 213
Period size: 54 Copynumber: 2.1 Consensus size: 54
59813367 CAAGTAACTA
*
59813377 ATAAAATATTAAACCTAATTAATAAAATAACAAGGTAAATTCGGCCATGCCCTT
1 ATAAAATATTAAACCTAATTAATAAAATAACAAGGTAAATTCGGCCATGCACTT
59813431 ATAAAATATTAAACCTAATTAATAAAATAACAAGGTAAATTCGGCCATGCACTT
1 ATAAAATATTAAACCTAATTAATAAAATAACAAGGTAAATTCGGCCATGCACTT
59813485 ATA
1 ATA
59813488 TGGGCTGTTT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.48, C:0.15, G:0.09, T:0.28
Consensus pattern (54 bp):
ATAAAATATTAAACCTAATTAATAAAATAACAAGGTAAATTCGGCCATGCACTT
Found at i:59814820 original size:11 final size:10
Alignment explanation
Indices: 59814787--59814825 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
59814777 TGCTCACCTT
**
59814787 TTTTTTTTCT
1 TTTTTTTTGA
59814797 TTTTTTTTGA
1 TTTTTTTTGA
59814807 TTTTTTTTGAA
1 TTTTTTTTG-A
59814818 TTTTTTTT
1 TTTTTTTT
59814826 TCTGAATTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.08, C:0.03, G:0.05, T:0.85
Consensus pattern (10 bp):
TTTTTTTTGA
Found at i:59814926 original size:10 final size:11
Alignment explanation
Indices: 59814911--59814939 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
59814901 CCAACTCAAT
59814911 TTTTTTTTGA-
1 TTTTTTTTGAC
59814921 TTTTTTTTGAC
1 TTTTTTTTGAC
59814932 TTTTTTTT
1 TTTTTTTT
59814940 TACGTTACGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.07, C:0.03, G:0.07, T:0.83
Consensus pattern (11 bp):
TTTTTTTTGAC
Found at i:59825138 original size:21 final size:20
Alignment explanation
Indices: 59825104--59825171 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
59825094 ACATTCTTGT
59825104 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGA-AAAAGCAAA-AAAAGA
*
59825125 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAAGCAAAAAAAG-A
* *
59825146 AAAGAAAACGAAATAAAAAGA
1 AAAGAAAAAGCAA-AAAAAGA
59825167 AAAGA
1 AAAGA
59825172 GAGGCAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 8 0.20
21 27 0.68
22 5 0.12
ACGTcount: A:0.76, C:0.04, G:0.18, T:0.01
Consensus pattern (20 bp):
AAAGAAAAAGCAAAAAAAGA
Found at i:59825139 original size:6 final size:5
Alignment explanation
Indices: 59825115--59825171 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
59825105 AAGAGAAAAC
*
59825115 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAACGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
59825162 AAAGA AAAGA
1 AAAGA AAAGA
59825172 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:59825146 original size:15 final size:14
Alignment explanation
Indices: 59825115--59825171 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
59825105 AAGAGAAAAC
59825115 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
59825131 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
59825146 AAAGAAAACGAAATAA
1 AAAGAAAA-G-AAGAA
59825162 AAAGAAAAGA
1 AAAGAAAAGA
59825172 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:59825248 original size:12 final size:12
Alignment explanation
Indices: 59825240--59825264 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
59825230 TTTGAAAAGC
59825240 AAAAAGAAAATG
1 AAAAAGAAAATG
59825252 AAAAAGAAAATG
1 AAAAAGAAAATG
59825264 A
1 A
59825265 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:59825261 original size:18 final size:18
Alignment explanation
Indices: 59825234--59825289 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
59825224 AAAGCCTTTG
59825234 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
59825253 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
59825271 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
59825288 AA
1 AA
59825290 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:59825274 original size:30 final size:31
Alignment explanation
Indices: 59825240--59825321 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
59825230 TTTGAAAAGC
*
59825240 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
59825270 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
59825300 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
59825322 TGTAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:59829133 original size:21 final size:21
Alignment explanation
Indices: 59829107--59829169 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
59829097 TTGGTATTTG
*
59829107 GGAATTGGTTCGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
59829128 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
59829149 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
59829170 ATGGTTCAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
21 22 0.58
22 16 0.42
ACGTcount: A:0.29, C:0.05, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:59829992 original size:27 final size:29
Alignment explanation
Indices: 59829945--59830001 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 29
59829935 AAAGTGATTA
*
59829945 AAAAAATTGACACAAGCAGAATTTAAAAG
1 AAAAAATTGACACAAGCAGAAATTAAAAG
59829974 AAAAAATT-A-AC-AGCAAGAAATTAAAAG
1 AAAAAATTGACACAAGC-AGAAATTAAAAG
59830001 A
1 A
59830002 TAAGTCCTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 3 0.12
27 14 0.54
28 1 0.04
29 8 0.31
ACGTcount: A:0.63, C:0.09, G:0.12, T:0.16
Consensus pattern (29 bp):
AAAAAATTGACACAAGCAGAAATTAAAAG
Found at i:59832550 original size:40 final size:40
Alignment explanation
Indices: 59832494--59832572 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
59832484 GCAACTCTTC
*
59832494 CACTTCCAGCCGTTTTTGGAGCTTTCAAGAGAAATTAATT
1 CACTTCCAGCCATTTTTGGAGCTTTCAAGAGAAATTAATT
*
59832534 CACTTCCAGCCATTTTTGGAGCTTTTAAGAGAAATTAAT
1 CACTTCCAGCCATTTTTGGAGCTTTCAAGAGAAATTAAT
59832573 CAAGCCTTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (40 bp):
CACTTCCAGCCATTTTTGGAGCTTTCAAGAGAAATTAATT
Found at i:59834751 original size:24 final size:23
Alignment explanation
Indices: 59834702--59834752 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 23
59834692 ACTAAAAAAG
* ***
59834702 GGTATTTGGTTTTGGTACGTTTT
1 GGTATTTGGATTTGGTACGAAAT
59834725 GGTATTTGGGATTTGGTACGAAAT
1 GGTATTT-GGATTTGGTACGAAAT
59834749 GGTA
1 GGTA
59834753 ATGGTTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.18, C:0.04, G:0.33, T:0.45
Consensus pattern (23 bp):
GGTATTTGGATTTGGTACGAAAT
Found at i:59843356 original size:23 final size:22
Alignment explanation
Indices: 59843304--59843356 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
59843294 TCCACGTCTT
*
59843304 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
59843326 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
59843349 TTTCTTTT
1 TTTCTTTT
59843357 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:59845725 original size:4 final size:4
Alignment explanation
Indices: 59845716--59845743 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
59845706 TTAAACTAAG
59845716 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
59845744 AATAAAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:59847762 original size:131 final size:132
Alignment explanation
Indices: 59847504--59847763 Score: 337
Period size: 131 Copynumber: 2.0 Consensus size: 132
59847494 CGTGTGTCAC
* *
59847504 ACACAGCCAATAGACACGCCTATGTGTCTAGGTCGTGCCAAACCTATAGGGTATACTAACTTAAA
1 ACACAGCCAATAGACACGCCCATGTGTCTAGGCCGTGCCAAACCTATAGGGTATACTAACTTAAA
* * * ** *
59847569 TTCGAAAGGGTACCCTAAGGGACACACGGCAGTGCAGCATGACCGTGTTTCAGACACGGCTGAGG
66 TTCGAAAGGGTACCCCAAGGGACACAAGGCAGTGCAGCATGACCATGGGTCAGACACAGCTGAGG
59847634 TG
131 TG
* * *
59847636 ACACAG-CAGTAGACATGCCCATGTGTCTAGGCCGTGCCAAACCTATAGGGTATACTAACTTTAA
1 ACACAGCCAATAGACACGCCCATGTGTCTAGGCCGTGCCAAACCTATAGGGTATACTAACTTAAA
* * * * *
59847700 TTTGAAAGGGTACCCCAGGGGACACAAGATCA-TGCAGCATTATCATGGGTC-GCACACAGCTGA
66 TTCGAAAGGGTACCCCAAGGGACACAAG-GCAGTGCAGCATGACCATGGGTCAG-ACACAGCTGA
59847763 G
129 G
59847764 ACACACGCCC
Statistics
Matches: 110, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
130 1 0.01
131 101 0.92
132 8 0.07
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.21
Consensus pattern (132 bp):
ACACAGCCAATAGACACGCCCATGTGTCTAGGCCGTGCCAAACCTATAGGGTATACTAACTTAAA
TTCGAAAGGGTACCCCAAGGGACACAAGGCAGTGCAGCATGACCATGGGTCAGACACAGCTGAGG
TG
Found at i:59851539 original size:41 final size:42
Alignment explanation
Indices: 59851446--59851583 Score: 167
Period size: 41 Copynumber: 3.4 Consensus size: 42
59851436 AATACTCTAT
*
59851446 ATCTCACACACTAAGTGCCATAACATAGTTGAAGCTATTATA
1 ATCTCACACACTAAGTGCCATATCATAGTTGAAGCTATTATA
* *
59851488 ATCTCGCACACTAAGTGCC-TTTCATAGTTGAAGCTATCT-TA
1 ATCTCACACACTAAGTGCCATATCATAGTTGAAGCTAT-TATA
* * * *
59851529 GTCTCACACACTAAGTGCCATAT-ATAGCTGAAGCTATTTTG
1 ATCTCACACACTAAGTGCCATATCATAGTTGAAGCTATTATA
*
59851570 ATC-CGCACACTAAG
1 ATCTCACACACTAAG
59851584 CGCTTTATAT
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
40 11 0.13
41 51 0.61
42 21 0.25
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (42 bp):
ATCTCACACACTAAGTGCCATATCATAGTTGAAGCTATTATA
Found at i:59851593 original size:40 final size:40
Alignment explanation
Indices: 59851445--59851605 Score: 137
Period size: 41 Copynumber: 4.0 Consensus size: 40
59851435 GAATACTCTA
* * * * *
59851445 TATCTCACACACTAAGTGCCATAACATAGTTGAAGCTATTAT
1 TATCTCGCACACTAAGTG-CTTTATATAGCTGAAGCTATT-T
* * * *
59851487 AATCTCGCACACTAAGTGCCTTT-CATAGTTGAAGCTATCT
1 TATCTCGCACACTAAGTG-CTTTATATAGCTGAAGCTATTT
* **
59851527 TAGTCTCACACACTAAGTGCCATATATAGCTGAAGCTATTT
1 TA-TCTCGCACACTAAGTGCTTTATATAGCTGAAGCTATTT
* *
59851568 TGATC-CGCACACTAAGCGCTTTATATAGCCGAAGCTAT
1 T-ATCTCGCACACTAAGTGCTTTATATAGCTGAAGCTAT
59851606 CTCTATACGC
Statistics
Matches: 99, Mismatches: 17, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
40 32 0.32
41 47 0.47
42 20 0.20
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (40 bp):
TATCTCGCACACTAAGTGCTTTATATAGCTGAAGCTATTT
Found at i:59851602 original size:81 final size:83
Alignment explanation
Indices: 59851447--59851607 Score: 220
Period size: 81 Copynumber: 2.0 Consensus size: 83
59851437 ATACTCTATA
* *
59851447 TCTCACACACTAAGTGCCATAACATAGTTGAAGCTATTATAATCTCGCACACTAAGTGCCTTTCA
1 TCTCACACACTAAGTGCCATAACATAGCTGAAGCTATTATAATCTCGCACACTAAGCGCCTTTCA
**
59851512 TAGTTGAAGCTATCTTAG
66 TAGCCGAAGCTATCTTAG
* * * *
59851530 TCTCACACACTAAGTGCCAT-ATATAGCTGAAGCTATTTTGATC-CGCACACTAAGCG-CTTTAT
1 TCTCACACACTAAGTGCCATAACATAGCTGAAGCTATTATAATCTCGCACACTAAGCGCCTTT-C
59851592 ATAGCCGAAGCTATCT
65 ATAGCCGAAGCTATCT
59851608 CTATACGCAA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 4 0.06
81 26 0.38
82 19 0.28
83 20 0.29
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (83 bp):
TCTCACACACTAAGTGCCATAACATAGCTGAAGCTATTATAATCTCGCACACTAAGCGCCTTTCA
TAGCCGAAGCTATCTTAG
Found at i:59851629 original size:19 final size:19
Alignment explanation
Indices: 59851605--59851643 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
59851595 GCCGAAGCTA
59851605 TCTCTATACGCAAACTATG
1 TCTCTATACGCAAACTATG
59851624 TCTCTATACGCAAACTATG
1 TCTCTATACGCAAACTATG
59851643 T
1 T
59851644 GCCAAACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (19 bp):
TCTCTATACGCAAACTATG
Found at i:59853664 original size:11 final size:11
Alignment explanation
Indices: 59853648--59853689 Score: 66
Period size: 11 Copynumber: 3.7 Consensus size: 11
59853638 TCGTAGATTC
59853648 AAAAAAAATTG
1 AAAAAAAATTG
*
59853659 AAAAAAAAGTG
1 AAAAAAAATTG
59853670 AAAAAAAAATTG
1 -AAAAAAAATTG
59853682 AAAAAAAA
1 AAAAAAAA
59853690 ATTGCATACG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.12
Consensus pattern (11 bp):
AAAAAAAATTG
Found at i:59853665 original size:12 final size:12
Alignment explanation
Indices: 59853648--59853693 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
59853638 TCGTAGATTC
59853648 AAAAAAAATTG-
1 AAAAAAAATTGA
*
59853659 AAAAAAAAGTGA
1 AAAAAAAATTGA
59853671 AAAAAAAATTGA
1 AAAAAAAATTGA
59853683 AAAAAAAATTG
1 AAAAAAAATTG
59853694 CATACGGTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
11 10 0.31
12 22 0.69
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (12 bp):
AAAAAAAATTGA
Found at i:59854527 original size:15 final size:15
Alignment explanation
Indices: 59854495--59854528 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
59854485 GTTCAACGAA
*
59854495 GAGGCCAACGCAACC
1 GAGGCCAACGAAACC
*
59854510 GAGGCCAACGAAATC
1 GAGGCCAACGAAACC
59854525 GAGG
1 GAGG
59854529 GAGGTTCGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.29, G:0.32, T:0.03
Consensus pattern (15 bp):
GAGGCCAACGAAACC
Found at i:59858397 original size:30 final size:30
Alignment explanation
Indices: 59858363--59858459 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
59858353 TAAACTAAAA
**
59858363 TGAGCTAAATTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
59858393 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
59858423 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
59858452 ATGAGCTA
1 -TGAGCTA
59858460 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
29 1 0.02
30 49 0.98
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:59860689 original size:65 final size:67
Alignment explanation
Indices: 59860585--59860721 Score: 251
Period size: 65 Copynumber: 2.1 Consensus size: 67
59860575 TATATTCAGA
59860585 AAAAAGTTCTTCCCTCTATGGCTGATTACATCTATTTATAATGCTAGAACAAGGTAACCGAA-TG
1 AAAAAGTTCTTCCCTCTATGGCTGATTACATCTATTTATAATGCTAGAACAAGGTAACCGAATTG
59860649 -C
66 TC
*
59860650 AAAAAGTTCTTCCCTCTATGGCTGATTACATCTATTTATAATGCTAGAACAAGGTAGCCGAATTG
1 AAAAAGTTCTTCCCTCTATGGCTGATTACATCTATTTATAATGCTAGAACAAGGTAACCGAATTG
59860715 TC
66 TC
59860717 AAAAA
1 AAAAA
59860722 CATCCACTTA
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
65 61 0.88
66 2 0.03
67 6 0.09
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (67 bp):
AAAAAGTTCTTCCCTCTATGGCTGATTACATCTATTTATAATGCTAGAACAAGGTAACCGAATTG
TC
Found at i:59861178 original size:21 final size:23
Alignment explanation
Indices: 59861133--59861179 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
59861123 TCACCTGCAA
* *
59861133 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
59861156 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
59861177 TAA
1 TAA
59861180 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:59866535 original size:17 final size:16
Alignment explanation
Indices: 59866513--59866570 Score: 82
Period size: 15 Copynumber: 3.6 Consensus size: 16
59866503 TAGCTTCTTC
59866513 TTTTTTTTCACGAAAAT
1 TTTTTTTTCACG-AAAT
*
59866530 TTTTTTTTCACGAATT
1 TTTTTTTTCACGAAAT
*
59866546 TTTTTTTTCA-GGAAT
1 TTTTTTTTCACGAAAT
59866561 TTTTTTTTCA
1 TTTTTTTTCA
59866571 ACTTGATATC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
15 13 0.34
16 13 0.34
17 12 0.32
ACGTcount: A:0.21, C:0.10, G:0.07, T:0.62
Consensus pattern (16 bp):
TTTTTTTTCACGAAAT
Found at i:59866545 original size:15 final size:15
Alignment explanation
Indices: 59866513--59866570 Score: 80
Period size: 16 Copynumber: 3.7 Consensus size: 15
59866503 TAGCTTCTTC
59866513 TTTTTTTTCACGAAAAT
1 TTTTTTTTCACG--AAT
59866530 TTTTTTTTCACGAATT
1 TTTTTTTTCACGAA-T
*
59866546 TTTTTTTTCAGGAAT
1 TTTTTTTTCACGAAT
59866561 TTTTTTTTCA
1 TTTTTTTTCA
59866571 ACTTGATATC
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
15 13 0.33
16 14 0.36
17 12 0.31
ACGTcount: A:0.21, C:0.10, G:0.07, T:0.62
Consensus pattern (15 bp):
TTTTTTTTCACGAAT
Found at i:59866637 original size:12 final size:12
Alignment explanation
Indices: 59866612--59866646 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
59866602 AAACCAATTT
59866612 TTTTATTTTG-AA
1 TTTT-TTTTGAAA
59866624 TTTTTTTTGAAA
1 TTTTTTTTGAAA
59866636 TTTTTTTTGAA
1 TTTTTTTTGAA
59866647 GAAACTACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 5 0.23
12 17 0.77
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.69
Consensus pattern (12 bp):
TTTTTTTTGAAA
Found at i:59872833 original size:40 final size:40
Alignment explanation
Indices: 59872775--59872853 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
59872765 ACTGATCTCT
* * * *
59872775 ATTTTTTAAAGCATAAACAGCAGTTTTACCCAGAAAAATA
1 ATTTTTTAAAGCACAAACAACAATTTTACCCAAAAAAATA
*
59872815 ATTTTTTAAAGCACAAACAACAATTTTGCCCAAAAAAAT
1 ATTTTTTAAAGCACAAACAACAATTTTACCCAAAAAAAT
59872854 TTTCGAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.47, C:0.16, G:0.08, T:0.29
Consensus pattern (40 bp):
ATTTTTTAAAGCACAAACAACAATTTTACCCAAAAAAATA
Found at i:59873866 original size:33 final size:33
Alignment explanation
Indices: 59873824--59873892 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
59873814 ACTCGCTGCC
*
59873824 ATGTACAAGGTAAGCTTTGTAGAGTTATTATTG
1 ATGTACAAGGTAAGCTTTGTAGAGTGATTATTG
59873857 ATGTACAAGGTAAGCTTTGTAGAGTGATTATTG
1 ATGTACAAGGTAAGCTTTGTAGAGTGATTATTG
59873890 ATG
1 ATG
59873893 GTGAAAGTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.30, C:0.06, G:0.26, T:0.38
Consensus pattern (33 bp):
ATGTACAAGGTAAGCTTTGTAGAGTGATTATTG
Found at i:59874300 original size:27 final size:27
Alignment explanation
Indices: 59874268--59874319 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
59874258 ACAAGTGAGG
59874268 AAAAAGAAAAAGAGAATGAAAAAGAGC
1 AAAAAGAAAAAGAGAATGAAAAAGAGC
* ** *
59874295 AAAAAGAGATTGAGAGTGAAAAAGA
1 AAAAAGAAAAAGAGAATGAAAAAGA
59874320 AATTGAAGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.65, C:0.02, G:0.25, T:0.08
Consensus pattern (27 bp):
AAAAAGAAAAAGAGAATGAAAAAGAGC
Found at i:59876645 original size:37 final size:37
Alignment explanation
Indices: 59876572--59876645 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
59876562 GATATGGTCT
* *
59876572 TACACTAGCTCTCACATATCTGTGCCGGTGCTATGTC
1 TACACTAGCTCTCACATATCTGTGCCGATGCCATGTC
* *
59876609 TACACTATCTCTCACATATCTGTGCTGATGCCATGTC
1 TACACTAGCTCTCACATATCTGTGCCGATGCCATGTC
59876646 CCAAACGTGG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.34
Consensus pattern (37 bp):
TACACTAGCTCTCACATATCTGTGCCGATGCCATGTC
Found at i:59885598 original size:43 final size:43
Alignment explanation
Indices: 59885535--59885701 Score: 178
Period size: 43 Copynumber: 3.9 Consensus size: 43
59885525 AGCTCGTATA
* * * * *
59885535 ATGCC-ATATCCCAGATATGGTCTTACATGTTACCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * *
59885577 ATGCCAATGTCCCAAACATGGTCTTATACGAAATCATATAAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT-ATCG
* *
59885620 ATGCCAATGTCCTAGACATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* *
59885663 ATGCCAATGTCCCAGACATTGTCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
59885702 CTTGATAATC
Statistics
Matches: 102, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
43 93 0.91
44 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:59888549 original size:33 final size:33
Alignment explanation
Indices: 59888504--59888591 Score: 90
Period size: 33 Copynumber: 2.7 Consensus size: 33
59888494 TTGAAAAAAC
* *
59888504 TGGGCCTAAGCCCATATCAATCGCAATATCAGTG
1 TGGGCCTTAGCCCATATCAATAGCAATAT-AGTG
* * *
59888538 T-GGCCTTAGCCCA-ATACAGTATCAGTATAGTG
1 TGGGCCTTAGCCCATAT-CAATAGCAATATAGTG
*
59888570 TGGGCCTTAGCCCATCTCAATA
1 TGGGCCTTAGCCCATATCAATA
59888592 CAGTAGCATA
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
32 7 0.16
33 35 0.80
34 2 0.05
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (33 bp):
TGGGCCTTAGCCCATATCAATAGCAATATAGTG
Found at i:59900754 original size:43 final size:42
Alignment explanation
Indices: 59900658--59900755 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 42
59900648 ACCATGTTTG
*
59900658 GGACGTTGGCATCATTATGTGATTACATGTAAGACCCTGTCT
1 GGACGTTGGCATCATTATGTGATTACATGTAAGACACTGTCT
*
59900700 GGA-ATAGTGGCATCGA-TATGTGATTACATGTAAGATCAC-GTCT
1 GGACGT--TGGCATC-ATTATGTGATTACATGTAAGA-CACTGTCT
59900743 GAGACGTTGGCAT
1 G-GACGTTGGCAT
59900756 TGTACGATAT
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
41 1 0.02
42 3 0.06
43 37 0.79
44 5 0.11
45 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (42 bp):
GGACGTTGGCATCATTATGTGATTACATGTAAGACACTGTCT
Found at i:59901099 original size:20 final size:22
Alignment explanation
Indices: 59901058--59901099 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
59901048 AACTTACGCA
*
59901058 AAATTATATGTCTTGAGAAATG
1 AAATTATAAGTCTTGAGAAATG
59901080 AAATTATAAGT-TTG-GAAATG
1 AAATTATAAGTCTTGAGAAATG
59901100 TATATGAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 3 0.16
22 10 0.53
ACGTcount: A:0.43, C:0.02, G:0.19, T:0.36
Consensus pattern (22 bp):
AAATTATAAGTCTTGAGAAATG
Found at i:59903831 original size:40 final size:40
Alignment explanation
Indices: 59903773--59903940 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
59903763 TCTTCAGGAT
* *
59903773 TTAG-CCGGATATAACAACTCGCATAAATGCCTTTGGGTC
1 TTAGCCCGGATATAGCAACTCGCATAAATGCCTTCGGGTC
**
59903812 TTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCATAAATGCCTTCGGGTC
* * *
59903852 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCATAAATGCCTTCGGGTC
* * *
59903892 ATAGCCCGGATATAGCAACTCGCATGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCATAAATGCCTTCGGGTC
*
59903932 TTAGTCCGG
1 TTAGCCCGG
59903941 TTATCATCCA
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 6 0.06
40 101 0.93
41 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCATAAATGCCTTCGGGTC
Found at i:59903910 original size:80 final size:79
Alignment explanation
Indices: 59903764--59903940 Score: 250
Period size: 80 Copynumber: 2.2 Consensus size: 79
59903754 ACCCAAGCAT
* * * *
59903764 CTTCAGGAT-TTAGCCGGATATAACAACTCGCATAAATGCCTTTGGGTCTTAGCCCGGATATAGC
1 CTTC-GGATCTTAGCCGGATATAACAACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
59903828 AACTCGCACGAATGC
65 AACTCGCACGAATGC
*
59903843 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAG
1 CTTCGGATCTTAG-CCGGATATAA-CAACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAG
*
59903907 CAACTCGCATGAATGC
64 CAACTCGCACGAATGC
59903923 CTTCGGATCTTAGTCCGG
1 CTTCGGATCTTAG-CCGG
59903941 TTATCATCCA
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
78 3 0.03
79 8 0.09
80 75 0.86
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CTTCGGATCTTAGCCGGATATAACAACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGCA
ACTCGCACGAATGC
Found at i:59906370 original size:18 final size:19
Alignment explanation
Indices: 59906335--59906371 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
59906325 TGAGTAGGCC
59906335 AAATGGGCCAGAATGGGCT
1 AAATGGGCCAGAATGGGCT
*
59906354 AAATGGGCCCG-ATGGGCT
1 AAATGGGCCAGAATGGGCT
59906372 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.27, C:0.19, G:0.38, T:0.16
Consensus pattern (19 bp):
AAATGGGCCAGAATGGGCT
Found at i:59906555 original size:57 final size:57
Alignment explanation
Indices: 59906468--59906614 Score: 163
Period size: 57 Copynumber: 2.6 Consensus size: 57
59906458 CAGATGGGCC
* * *
59906468 ATATAAATAAGATTGGGCCTAATGGGCCATATAAATGAG-ATTGGGCCTAATAGGCA
1 ATATGAATGAGATTGGGCCTAATGGACCATATAAATGAGAATTGGGCCTAATAGGCA
* * * * * * *
59906524 ATATGAATGTGAATTGGGCCTGATGGACCATATGAATGTGAATTGGGCCTGATGGGCT
1 ATATGAATGAG-ATTGGGCCTAATGGACCATATAAATGAGAATTGGGCCTAATAGGCA
*
59906582 ATATGAATGAGATTGGGCC-AAGTGGGCCATATA
1 ATATGAATGAGATTGGGCCTAA-TGGACCATATA
59906615 CATGTATGAA
Statistics
Matches: 74, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
56 9 0.12
57 41 0.55
58 24 0.32
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (57 bp):
ATATGAATGAGATTGGGCCTAATGGACCATATAAATGAGAATTGGGCCTAATAGGCA
Found at i:59906556 original size:29 final size:28
Alignment explanation
Indices: 59906452--59906613 Score: 173
Period size: 28 Copynumber: 5.7 Consensus size: 28
59906442 ATTATGTGAT
* * *
59906452 TTGGGCCAGATGGGCCATATAAATAAGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
* *
59906480 TTGGGCCTAATGGGCCATATAAATGAGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
* * * *
59906508 TTGGGCCTAATAGGCAATATGAATGTGAA
1 TTGGGCCTGATGGGCCATATGAATGAG-A
* *
59906537 TTGGGCCTGATGGACCATATGAATGTGAA
1 TTGGGCCTGATGGGCCATATGAATGAG-A
*
59906566 TTGGGCCTGATGGGCTATATGAATGAGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
*
59906594 TTGGGCC-AAGTGGGCCATAT
1 TTGGGCCTGA-TGGGCCATAT
59906614 ACATGTATGA
Statistics
Matches: 116, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
27 1 0.01
28 65 0.56
29 50 0.43
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.26
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGAGA
Found at i:59929299 original size:40 final size:40
Alignment explanation
Indices: 59929209--59929368 Score: 211
Period size: 40 Copynumber: 4.0 Consensus size: 40
59929199 TGATAACCGA
* *
59929209 GCTAAGTCCTGAAGGCATTT-TGCGCTAGTGACTAGT-TCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TATCCGG
59929250 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
*
59929290 GCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* *
59929330 GCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
59929369 TTAAATCCTG
Statistics
Matches: 110, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.02
39 18 0.16
40 67 0.61
41 19 0.17
42 4 0.04
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
Found at i:59940705 original size:50 final size:50
Alignment explanation
Indices: 59940630--59940730 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
59940620 AAGATGCGAA
*
59940630 TCTGCCAAGGAATTGATTCGGCCAAGAATGCCCAATTTCCAGCAATCAAT
1 TCTGCCAAGGAATTGATTCGGCCAAGAATGCCCAATTTCCAGCAAACAAT
59940680 TCTGCCAAGGAATTGATTCGGCCAAGAATGCCCAATTTCCAGCAAACAAT
1 TCTGCCAAGGAATTGATTCGGCCAAGAATGCCCAATTTCCAGCAAACAAT
59940730 T
1 T
59940731 GATTCCCAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (50 bp):
TCTGCCAAGGAATTGATTCGGCCAAGAATGCCCAATTTCCAGCAAACAAT
Found at i:59945937 original size:468 final size:468
Alignment explanation
Indices: 59945061--59945973 Score: 1603
Period size: 468 Copynumber: 2.0 Consensus size: 468
59945051 AAAGAATCAA
* *
59945061 CCAAATAGCTACTCACCACATTTGAGCAACTACCACTATCAATAATGAGTGAACATAAGTTACCT
1 CCAAATAACTACTCACCACATTCGAGCAACTACCACTATCAATAATGAGTGAACATAAGTTACCT
59945126 TTAATAAAACACCGAGAATGGAAAATATTGGCCCTTTGGCTATCATCATCTTTCATCTGAATGTT
66 TTAATAAAACACCGAGAATGGAAAATATTGGCCCTTTGGCTATCATCATCTTTCATCTGAATGTT
*
59945191 AAGGGTTCGACGAACTACAAGACATTGAAAATCAGCAAAGTCTCCTTCTCTGGGTGGTTCAACCA
131 AAGGGTTCGACGAACTACAAGACATTGAAAATCAGCAAAGTCCCCTTCTCTGGGTGGTTCAACCA
* * *
59945256 ACTCTTCGCCATTATCACTGTCATCAACATGTTCTGGCATATCTGGATCTGTTTTATCAGAGTCG
196 ACTCGTCGCCATTATCACTGTCATCAACAAGTTCTGGCATATCTGGATCTGTATTATCAGAGTCG
59945321 GAAGTATACTCACCATTATCTTTTAGAAGAAGGAATCTCGTGTTAGGGCATTCCCTACTATAATG
261 GAAGTATACTCACCATTATCTTTTAGAAGAAGGAATCTCGTGTTAGGGCATTCCCTACTATAATG
59945386 ACCACGCCCTTTGCACTTAAAACATTCAACCTCACGAGTCCTCTTCACACTCGAATCACCTAAAT
326 ACCACGCCCTTTGCACTTAAAACATTCAACCTCACGAGTCCTCTTCACACTCGAATCACCTAAAT
59945451 TGGGCTGCTTAGAAGGTGTTTGCGTTTTAGCAGGAGCCCCTTTTTTCCAATCTGACTGCTTGTTA
391 TGGGCTGCTTAGAAGGTGTTTGCGTTTTAGCAGGAGCCCCTTTTTTCCAATCTGACTGCTTGTTA
59945516 CTCAAAGAAGACT
456 CTCAAAGAAGACT
* *
59945529 CCAAATAACTACTCACTACATTCGAGCAACTCCCACTATCAATAATGAGTGAACATAAGTTACCT
1 CCAAATAACTACTCACCACATTCGAGCAACTACCACTATCAATAATGAGTGAACATAAGTTACCT
* *
59945594 TTAATAAAACACCGAGAATGGAAAATATTGGCCCTTTGGCTCTCATCATCTTTTATCTGAATGTT
66 TTAATAAAACACCGAGAATGGAAAATATTGGCCCTTTGGCTATCATCATCTTTCATCTGAATGTT
* * * *
59945659 AAGGGTTCGACGAACTACAAGGCATTGAAAATTAGCAAAGTCCCCTTC-CTTTGGTGGTTCGACC
131 AAGGGTTCGACGAACTACAAGACATTGAAAATCAGCAAAGTCCCCTTCTC-TGGGTGGTTCAACC
*
59945723 AACTCGTCGCCATTATCACTGTCATCCACAAGTTCTGGCATATCTGGATCTGTATTATCAGAGTC
195 AACTCGTCGCCATTATCACTGTCATCAACAAGTTCTGGCATATCTGGATCTGTATTATCAGAGTC
* * * *
59945788 GGAAGTGTACTCACCGTTATCTTTTAGAAGAAGTAATCTCGTGTTAGGGCATTCTCTACTATAAT
260 GGAAGTATACTCACCATTATCTTTTAGAAGAAGGAATCTCGTGTTAGGGCATTCCCTACTATAAT
* * *
59945853 GACCACGCCCTTTGCACTTAAAGCATTCAATCTCACGAGTCCTCTTCGCACTCGAATCACCTAAA
325 GACCACGCCCTTTGCACTTAAAACATTCAACCTCACGAGTCCTCTTCACACTCGAATCACCTAAA
*
59945918 TTGGGCTGCTTAGAAGGTGTTTGCGTTTTTGCAGGAGCCCCTTTTTTCCAATCTGA
390 TTGGGCTGCTTAGAAGGTGTTTGCGTTTTAGCAGGAGCCCCTTTTTTCCAATCTGA
59945974 TTGTTTACTT
Statistics
Matches: 421, Mismatches: 23, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
467 1 0.00
468 420 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (468 bp):
CCAAATAACTACTCACCACATTCGAGCAACTACCACTATCAATAATGAGTGAACATAAGTTACCT
TTAATAAAACACCGAGAATGGAAAATATTGGCCCTTTGGCTATCATCATCTTTCATCTGAATGTT
AAGGGTTCGACGAACTACAAGACATTGAAAATCAGCAAAGTCCCCTTCTCTGGGTGGTTCAACCA
ACTCGTCGCCATTATCACTGTCATCAACAAGTTCTGGCATATCTGGATCTGTATTATCAGAGTCG
GAAGTATACTCACCATTATCTTTTAGAAGAAGGAATCTCGTGTTAGGGCATTCCCTACTATAATG
ACCACGCCCTTTGCACTTAAAACATTCAACCTCACGAGTCCTCTTCACACTCGAATCACCTAAAT
TGGGCTGCTTAGAAGGTGTTTGCGTTTTAGCAGGAGCCCCTTTTTTCCAATCTGACTGCTTGTTA
CTCAAAGAAGACT
Found at i:59947412 original size:10 final size:9
Alignment explanation
Indices: 59947379--59947432 Score: 56
Period size: 9 Copynumber: 6.0 Consensus size: 9
59947369 CGCTGAATCT
*
59947379 TTTTTTTAA
1 TTTTTTTGA
59947388 TTTTTATTGA
1 TTTTT-TTGA
* *
59947398 ATTTTGT-A
1 TTTTTTTGA
59947406 TTTTTTTGA
1 TTTTTTTGA
59947415 TTTTTTTGA
1 TTTTTTTGA
*
59947424 CTTTTTTGA
1 TTTTTTTGA
59947433 CTGATTTTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
8 6 0.16
9 24 0.65
10 7 0.19
ACGTcount: A:0.17, C:0.02, G:0.09, T:0.72
Consensus pattern (9 bp):
TTTTTTTGA
Found at i:59947764 original size:265 final size:266
Alignment explanation
Indices: 59947290--59947819 Score: 940
Period size: 265 Copynumber: 2.0 Consensus size: 266
59947280 TCCCGATCTC
59947290 CAAAAATCACGAAATTAAATCTGGAGTGTCCTTATATATTGAATTTTTGATCTGGAAATTTTGGG
1 CAAAAATCACGAAATTAAATCTGGAGTGTCCTTATATATTGAATTTTTGATCTGGAAATTTTGGG
*
59947355 CACCAAATTCAACCCGCTGAATCTTTTTTTTAATTTTTATTGAATTTTGTATTTTTTTGATTTTT
66 CACCAAATTCAACCCGCTGAATCTTTTTTTTAATTTTTATTGAATTTCGTATTTTTTTGATTTTT
* *
59947420 TTGACTTTTTTGACTGATTTTTTTGCGGGAATATTTTTTTTATATTCAATCATAGTGCCAAAAAC
131 TTGACTTTTTTGACTGATTTTTTTGCGGGAATAATTTTTTTATATTCAATCACAGTGCCAAAAAC
* *
59947485 ATGTATGCAAAATTTTAGATCAATCGGACGACGTTTACCCACTCAAATG-AATTTTTTTGAACAA
196 ATGTATGCAAAATTTCAGATCAATCGGACAACGTTTACCCACTCAAATGAAATTTTTTTGAACAA
59947549 TTTTTT
261 TTTTTT
*
59947555 CAAAAATCACGAAATTTAATCTGGAGTGTCCTTATATATTGAATTTTTGATCTGGAAATTTTGGG
1 CAAAAATCACGAAATTAAATCTGGAGTGTCCTTATATATTGAATTTTTGATCTGGAAATTTTGGG
*
59947620 CACCAAATTCAACCCGCTG-A-CTTTTTTTTAAAATTTTTATTGAATTTCGTATTTTTTTTATTT
66 CACCAAATTCAACCCGCTGAATCTTTTTTTT--AATTTTTATTGAATTTCGTATTTTTTTGATTT
*
59947683 TTTTGACTTTTTTGACTGATTTTTTTGCGGTAATAATTTTTTTATATTCAATCACAGTGCCAAAA
129 TTTTGACTTTTTTGACTGATTTTTTTGCGGGAATAATTTTTTTATATTCAATCACAGTGCCAAAA
*
59947748 ACATGTATGTAAAATTTCAGATCAATCGGACAACGTTTACCCACTCAAATGAAATTTTTTTGAAC
194 ACATGTATGCAAAATTTCAGATCAATCGGACAACGTTTACCCACTCAAATGAAATTTTTTTGAAC
59947813 AATTTTT
259 AATTTTT
59947820 CTGGGTAAAA
Statistics
Matches: 253, Mismatches: 9, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
263 9 0.04
264 1 0.00
265 223 0.88
266 20 0.08
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.44
Consensus pattern (266 bp):
CAAAAATCACGAAATTAAATCTGGAGTGTCCTTATATATTGAATTTTTGATCTGGAAATTTTGGG
CACCAAATTCAACCCGCTGAATCTTTTTTTTAATTTTTATTGAATTTCGTATTTTTTTGATTTTT
TTGACTTTTTTGACTGATTTTTTTGCGGGAATAATTTTTTTATATTCAATCACAGTGCCAAAAAC
ATGTATGCAAAATTTCAGATCAATCGGACAACGTTTACCCACTCAAATGAAATTTTTTTGAACAA
TTTTTT
Found at i:59948445 original size:12 final size:12
Alignment explanation
Indices: 59948428--59948481 Score: 92
Period size: 12 Copynumber: 4.6 Consensus size: 12
59948418 TAGTTTCTCG
*
59948428 AAAAAAACTCAA
1 AAAAAAATTCAA
59948440 AAAAAAATTCAA
1 AAAAAAATTCAA
59948452 AAAAAAATTC-A
1 AAAAAAATTCAA
59948463 AAAAAAATTCAA
1 AAAAAAATTCAA
59948475 AAAAAAA
1 AAAAAAA
59948482 ACTTTTGGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
11 11 0.28
12 29 0.73
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.13
Consensus pattern (12 bp):
AAAAAAATTCAA
Found at i:59948457 original size:23 final size:23
Alignment explanation
Indices: 59948428--59948481 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
59948418 TAGTTTCTCG
59948428 AAAAAAACTCAAAAAAAAATTCAA
1 AAAAAAACTC-AAAAAAAATTCAA
*
59948452 AAAAAAATTCAAAAAAAATTCAA
1 AAAAAAACTCAAAAAAAATTCAA
59948475 AAAAAAA
1 AAAAAAA
59948482 ACTTTTGGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 20 0.69
24 9 0.31
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.13
Consensus pattern (23 bp):
AAAAAAACTCAAAAAAAATTCAA
Found at i:59948544 original size:13 final size:13
Alignment explanation
Indices: 59948526--59948565 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
59948516 TATCAAGTTG
59948526 TGAAAAAAAAAAT
1 TGAAAAAAAAAAT
59948539 TGAAAAAAAAAAT
1 TGAAAAAAAAAAT
*
59948552 TGTGAAAAAAAAAT
1 TG-AAAAAAAAAAT
59948566 ATTGTGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.17
Consensus pattern (13 bp):
TGAAAAAAAAAAT
Found at i:59948547 original size:14 final size:14
Alignment explanation
Indices: 59948528--59948569 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
59948518 TCAAGTTGTG
59948528 AAAAAAAAAATTGA
1 AAAAAAAAAATTGA
*
59948542 AAAAAAAAATTGTGA
1 AAAAAAAAAAT-TGA
*
59948557 AAAAAAAATATTG
1 AAAAAAAAAATTG
59948570 TGAAAAAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (14 bp):
AAAAAAAAAATTGA
Found at i:59948560 original size:16 final size:15
Alignment explanation
Indices: 59948523--59948578 Score: 89
Period size: 16 Copynumber: 3.8 Consensus size: 15
59948513 GGATATCAAG
59948523 TTGTGAAAAAAAAAA
1 TTGTGAAAAAAAAAA
59948538 -T-TGAAAAAAAAAA
1 TTGTGAAAAAAAAAA
59948551 TTGTGAAAAAAAAATA
1 TTGTGAAAAAAAAA-A
59948567 TTGTGAAAAAAA
1 TTGTGAAAAAAA
59948579 GAGAGAGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
13 12 0.32
14 2 0.05
15 11 0.29
16 13 0.34
ACGTcount: A:0.66, C:0.00, G:0.12, T:0.21
Consensus pattern (15 bp):
TTGTGAAAAAAAAAA
Found at i:59952377 original size:46 final size:46
Alignment explanation
Indices: 59952325--59952418 Score: 163
Period size: 46 Copynumber: 2.0 Consensus size: 46
59952315 ATAGTGTGGC
*
59952325 GTTCATCATATACCAAGGTTCTTATCA-TCATTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATTC-TTGATAGTGGGTCGAG
59952371 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
59952417 GT
1 GT
59952419 CTTTTCTTTG
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 44 0.96
47 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (46 bp):
GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
Found at i:59953855 original size:11 final size:11
Alignment explanation
Indices: 59953832--59953862 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
59953822 TTAAAAAAAA
59953832 TTTTTGAATTT
1 TTTTTGAATTT
59953843 TTTTTCGAATTT
1 TTTTT-GAATTT
59953855 TTTTTGAA
1 TTTTTGAA
59953863 GAAACTACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.19, C:0.03, G:0.10, T:0.68
Consensus pattern (11 bp):
TTTTTGAATTT
Found at i:59957559 original size:14 final size:14
Alignment explanation
Indices: 59957540--59957567 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
59957530 TGATCTAACT
59957540 AGTAATTCATCATA
1 AGTAATTCATCATA
59957554 AGTAATTCATCATA
1 AGTAATTCATCATA
59957568 CATATCACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
AGTAATTCATCATA
Found at i:59958475 original size:28 final size:28
Alignment explanation
Indices: 59958412--59958562 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
59958402 ATATTAAGTC
*
59958412 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
59958439 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
59958467 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
59958495 CGCACACTTAGTGCTACATAATCAAAAT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
59958523 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
59958552 CGCACACTTAG
1 CGCACACTTAG
59958563 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 76 0.67
29 15 0.13
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:59967655 original size:54 final size:54
Alignment explanation
Indices: 59967573--59967676 Score: 190
Period size: 54 Copynumber: 1.9 Consensus size: 54
59967563 TGAAAAAAAA
*
59967573 AACTAAGTTGATCTCATCTATCGAATAATAACATAACAAAATACTATCTTAAAC
1 AACTAAGTCGATCTCATCTATCGAATAATAACATAACAAAATACTATCTTAAAC
*
59967627 AACTAAGTCGATCTCATCTATCGAATAATAACATATCAAAATACTATCTT
1 AACTAAGTCGATCTCATCTATCGAATAATAACATAACAAAATACTATCTT
59967677 CTTCATGCTG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (54 bp):
AACTAAGTCGATCTCATCTATCGAATAATAACATAACAAAATACTATCTTAAAC
Found at i:59979853 original size:49 final size:48
Alignment explanation
Indices: 59979681--59979872 Score: 204
Period size: 49 Copynumber: 3.9 Consensus size: 48
59979671 CAAAGCTATC
* * *
59979681 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCCAA--ATT
* * * * * * *
59979731 TGATACACGTAGTAGCCTGCATTTAGTACTACACACGTGATCGAAGTT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCCAAATT
* *
59979779 ATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCCATAATT
1 -T--GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCCA-AATT
* *
59979831 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
59979873 TCACAATAGA
Statistics
Matches: 116, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
48 1 0.01
49 38 0.33
50 38 0.33
51 36 0.31
52 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (48 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCCAAATT
Found at i:59979870 original size:100 final size:100
Alignment explanation
Indices: 59979677--59979870 Score: 309
Period size: 101 Copynumber: 1.9 Consensus size: 100
59979667 TAGCCAAAGC
* * *
59979677 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTA
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCCAA-CATCTGATACACGTA
*
59979742 GTAGCCTGCATTTAGTACTACACACGTGATCGAAGT
65 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* *
59979778 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCCATA-ATTTGGTACACGTA
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCCA-ACATCTGATACACGTA
59979842 GTAGCCTGCACTTAGTACTACACACGTGA
65 GTAGCCTGCACTTAGTACTACACACGTGA
59979871 CCTCACAATA
Statistics
Matches: 86, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
100 40 0.47
101 45 0.52
102 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCCAACATCTGATACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:59983262 original size:48 final size:48
Alignment explanation
Indices: 59983148--59983381 Score: 274
Period size: 48 Copynumber: 4.9 Consensus size: 48
59983138 ATGAGAACCT
** * * ** *
59983148 GTGTAAGACCATGTCTTAGACATGGCATCGACGTCTGAGATAAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACAT-TGATATGTGTGCCA
* *
59983197 GTGTAAGACCATCTCTGGGACATGGCATCGGCATTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCCA
*
59983245 GTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGCTATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGATATGTGTGCCA
* * *
59983293 GTGTAAGACTATGTTTGGGACATGGCATCGACGA-TGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGAC-ATTGATATGTGTGCCA
* * * *
59983341 GTGTGAGACTATGTTTGGGACATGGCATTGACATTGATATG
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATG
59983382 AGACTTCGTA
Statistics
Matches: 163, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
47 1 0.01
48 131 0.80
49 31 0.19
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCCA
Found at i:59988016 original size:55 final size:54
Alignment explanation
Indices: 59987887--59988082 Score: 263
Period size: 54 Copynumber: 3.6 Consensus size: 54
59987877 TTGGTAAGAT
*
59987887 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * *
59987941 AAGGAAATCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGC
* *
59987996 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTG-TTAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * *
59988048 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCA
59988083 ATGGAAAGTT
Statistics
Matches: 127, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
51 4 0.03
52 33 0.26
53 1 0.01
54 47 0.37
55 38 0.30
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
Found at i:59988093 original size:107 final size:109
Alignment explanation
Indices: 59987895--59988093 Score: 305
Period size: 107 Copynumber: 1.8 Consensus size: 109
59987885 ATAAGGATAT
* *
59987895 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* * *
59987960 ATGTCAAGGCATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCATGGATAAGTTACTATAAGGCAAAGGTCC
* *
59988004 CATGTAAGACCATGCCAAGGCATGGCATTG-TTAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
59988067 ATGTCAAGACATGGCAATGGA-AAGTTA
66 ATGTCAAGACATGGC-ATGGATAAGTTA
59988094 AAAAAGGAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 42 0.51
108 10 0.12
109 30 0.37
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ATGTCAAGACATGGCATGGATAAGTTACTATAAGGCAAAGGTCC
Found at i:59992400 original size:28 final size:29
Alignment explanation
Indices: 59992367--59992422 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
59992357 TTAATGAAAA
* *
59992367 TGCAAA-TTAGGGGATAAATTGTGAAATG
1 TGCAAATTTAAGGGATAAAATGTGAAATG
*
59992395 TGCAAATTTAAGGGTTAAAATGTGAAAT
1 TGCAAATTTAAGGGATAAAATGTGAAAT
59992423 AAATGAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.41, C:0.04, G:0.25, T:0.30
Consensus pattern (29 bp):
TGCAAATTTAAGGGATAAAATGTGAAATG
Found at i:59994418 original size:48 final size:48
Alignment explanation
Indices: 59994314--59994411 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
59994304 GAAAATCAAA
59994314 GTCTAAAATTTACTGATGAAGAATATTTGTGCATTTTGATGTCTAATG
1 GTCTAAAATTTACTGATGAAGAATATTTGTGCATTTTGATGTCTAATG
59994362 GTCTAAAATTTACTGATGAAGAATATTTGTGCATTTTGATGTCTAATG
1 GTCTAAAATTTACTGATGAAGAATATTTGTGCATTTTGATGTCTAATG
59994410 GT
1 GT
59994412 ACAAAATGTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (48 bp):
GTCTAAAATTTACTGATGAAGAATATTTGTGCATTTTGATGTCTAATG
Found at i:59995677 original size:16 final size:16
Alignment explanation
Indices: 59995656--59995688 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
59995646 ATGTAACGCC
59995656 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
*
59995672 CCAAAAATCCTGAAAT
1 CCAAAAATCCCGAAAT
59995688 C
1 C
59995689 TTGAAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.30, G:0.06, T:0.15
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:59997206 original size:29 final size:28
Alignment explanation
Indices: 59997149--59997237 Score: 90
Period size: 28 Copynumber: 3.1 Consensus size: 28
59997139 GTGAGCATGA
* * *
59997149 ATATGAATGTGA-CTGGGCCTAGTGCGCC
1 ATAT-AATGTGATTTGGGCCTAATGGGCC
59997177 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATAT-AATGTGATTTGGGCCTAATGGGCC
* * * *
59997206 ATATAAGGTGATTAGGGCCTAATAGGTC
1 ATATAATGTGATTTGGGCCTAATGGGCC
59997234 ATAT
1 ATAT
59997238 GAATATGAAT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 35 0.67
29 17 0.33
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (28 bp):
ATATAATGTGATTTGGGCCTAATGGGCC
Found at i:59998734 original size:43 final size:43
Alignment explanation
Indices: 59998673--59998871 Score: 158
Period size: 43 Copynumber: 4.6 Consensus size: 43
59998663 GAGATATCGT
59998673 GTAAGACC-CTGTCTGGGACAGTGGCATCAATATATGATTTCAC
1 GTAAGACCAC-GTCTGGGACAGTGGCATCAATATATGATTTCAC
*
59998716 GTAAGACCACGTCTGGGAC-GTTGGCATCAATTTGA-GATTT-AC
1 GTAAGACCACGTCTGGGACAG-TGGCATCAATAT-ATGATTTCAC
* * * * * * *
59998758 GTGTAAGACCATGTTTGGGACATTGGCATC-GTATTTAATTTCAT
1 --GTAAGACCACGTCTGGGACAGTGGCATCAATATATGATTTCAC
** * * * *
59998802 GTAAGACCGTGTCTGGGACAGTGGCATCGATATTTGATTACAT
1 GTAAGACCACGTCTGGGACAGTGGCATCAATATATGATTTCAC
* *
59998845 GTAAGACCACATCTAGGAC-GTTGGCAT
1 GTAAGACCACGTCTGGGACAG-TGGCAT
59998872 TGTTCAAGTT
Statistics
Matches: 127, Mismatches: 19, Indels: 20
0.77 0.11 0.12
Matches are distributed among these distances:
42 29 0.23
43 71 0.56
44 27 0.21
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (43 bp):
GTAAGACCACGTCTGGGACAGTGGCATCAATATATGATTTCAC
Found at i:59998816 original size:86 final size:89
Alignment explanation
Indices: 59998662--59998853 Score: 220
Period size: 86 Copynumber: 2.2 Consensus size: 89
59998652 TTCCGAGGTG
* * *
59998662 TGAGATAT-CGTGTAAGACCCTGTCTGGGACAGTGGCATCAATATATGATTTCACGTAAGACCAC
1 TGAGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCAATATATAATTTCACGTAAGACCAC
59998726 GTCTGGGAC-GTTGGCATC-A-ATT
66 GTCTGGGACAG-TGGCATCGATATT
* * * * * **
59998748 TGAGATTTACGTGTAAGACCATGTTTGGGACATTGGCATC-GTATTTAATTTCATGTAAGACCGT
1 TGAGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCAATATATAATTTCACGTAAGACCAC
59998812 GTCTGGGACAGTGGCATCGATATT
66 GTCTGGGACAGTGGCATCGATATT
*
59998836 T--GA-TTACATGTAAGACCA
1 TGAGATTTACGTGTAAGACCA
59998854 CATCTAGGAC
Statistics
Matches: 91, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
85 14 0.15
86 43 0.47
87 30 0.33
88 4 0.04
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (89 bp):
TGAGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCAATATATAATTTCACGTAAGACCAC
GTCTGGGACAGTGGCATCGATATT
Found at i:60001594 original size:14 final size:15
Alignment explanation
Indices: 60001565--60001609 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 15
60001555 GTTATAATTA
60001565 TATGAGCATATGAGT
1 TATGAGCATATGAGT
*
60001580 TATGA-CATTTGAGT
1 TATGAGCATATGAGT
60001594 TATGATGCTATATGAG
1 TATGA-GC-ATATGAG
60001610 AATTTCGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 13 0.52
15 5 0.20
16 1 0.04
17 6 0.24
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (15 bp):
TATGAGCATATGAGT
Found at i:60005514 original size:29 final size:28
Alignment explanation
Indices: 60005478--60005555 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
60005468 TCATGAGATT
60005478 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
60005508 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
60005535 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
60005556 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:60005798 original size:174 final size:173
Alignment explanation
Indices: 60005508--60005832 Score: 605
Period size: 174 Copynumber: 1.9 Consensus size: 173
60005498 AAATTGTACA
*
60005508 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
60005573 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
60005638 TTTTGGACAGCGGAGAAAGGTATTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGA-AAAGGTATTGTGCGAACTTGAAATGCATG
* *
60005682 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
60005747 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
60005812 TTTTGGACAGCGGAAAAGGTA
131 TTTTGGACAGCGGAAAAGGTA
60005833 AGTACCTTGA
Statistics
Matches: 147, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
173 7 0.05
174 140 0.95
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (173 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTATTGTGCGAACTTGAAATGCATG
Found at i:60008905 original size:16 final size:15
Alignment explanation
Indices: 60008879--60008915 Score: 65
Period size: 16 Copynumber: 2.4 Consensus size: 15
60008869 CAAAATCGAA
60008879 TTCTTTGCTCATCTT
1 TTCTTTGCTCATCTT
60008894 TTCTTCTGCTCATCTT
1 TTCTT-TGCTCATCTT
60008910 TTCTTT
1 TTCTTT
60008916 TTCTTTTAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.05, C:0.27, G:0.05, T:0.62
Consensus pattern (15 bp):
TTCTTTGCTCATCTT
Found at i:60010032 original size:27 final size:26
Alignment explanation
Indices: 60009992--60010067 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 26
60009982 AGGAAGCGTC
* *
60009992 CTGGTGGTTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
60010019 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
60010046 CCGGTGGCTCTGCCACGATTAT
1 CTGGTGGCTCTGCCAC-ATTAT
60010068 TATCTGTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 2 0.05
27 39 0.91
28 2 0.05
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:60010074 original size:30 final size:28
Alignment explanation
Indices: 60010002--60010075 Score: 98
Period size: 27 Copynumber: 2.6 Consensus size: 28
60009992 CTGGTGGTTA
* *
60010002 TGCCACA-ATTATCTGATCTGGTGGCTC
1 TGCCACATATTATCTGTTCCGGTGGCTC
60010029 TGCCACATA-TATCTGTTCCGGTGGCTC
1 TGCCACATATTATCTGTTCCGGTGGCTC
60010056 TGCCACGATTATTATCTGTT
1 TGCCAC-A-TATTATCTGTT
60010076 TTGGCAACCA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
27 29 0.71
28 2 0.05
29 2 0.05
30 8 0.20
ACGTcount: A:0.18, C:0.26, G:0.20, T:0.36
Consensus pattern (28 bp):
TGCCACATATTATCTGTTCCGGTGGCTC
Found at i:60013520 original size:10 final size:10
Alignment explanation
Indices: 60013505--60013534 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
60013495 AACAAAAAGG
60013505 CATATTATAA
1 CATATTATAA
60013515 CATATTATAA
1 CATATTATAA
*
60013525 CATATAATAA
1 CATATTATAA
60013535 AATCATTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (10 bp):
CATATTATAA
Found at i:60035168 original size:40 final size:40
Alignment explanation
Indices: 60035113--60035294 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
60035103 AGAGAAATAA
*
60035113 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
60035153 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
60035193 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
60035233 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
* *
60035273 ATA-TCCGGCTAAATCCCGAAGG
1 ATATTCGGGCTAAGTCCCGAAGG
60035295 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 15 0.11
40 114 0.87
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:60038065 original size:23 final size:23
Alignment explanation
Indices: 60038039--60038085 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
60038029 ATTGTTTAAG
* *
60038039 TTAAATGAACATGTTTGTAAACA
1 TTAAATGAACATGTTCGAAAACA
60038062 TTAAATGAACATGTTCGAAAACA
1 TTAAATGAACATGTTCGAAAACA
60038085 T
1 T
60038086 CTTCATAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (23 bp):
TTAAATGAACATGTTCGAAAACA
Found at i:60038209 original size:12 final size:12
Alignment explanation
Indices: 60038192--60038216 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
60038182 TCAAATACAA
60038192 ATATTATAAATT
1 ATATTATAAATT
60038204 ATATTATAAATT
1 ATATTATAAATT
60038216 A
1 A
60038217 ATAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATATTATAAATT
Found at i:60042310 original size:40 final size:40
Alignment explanation
Indices: 60042255--60042475 Score: 392
Period size: 40 Copynumber: 5.5 Consensus size: 40
60042245 TATTCGAATG
60042255 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
60042295 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
60042335 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
60042375 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
60042415 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
60042455 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
60042476 ATACTTGGGT
Statistics
Matches: 176, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
39 13 0.07
40 161 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:60059246 original size:14 final size:14
Alignment explanation
Indices: 60059227--60059257 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
60059217 TTATTTTAGA
60059227 TATAATAGTCAGTT
1 TATAATAGTCAGTT
60059241 TATAATAGTCAGTT
1 TATAATAGTCAGTT
60059255 TAT
1 TAT
60059258 GAAGGAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.45
Consensus pattern (14 bp):
TATAATAGTCAGTT
Found at i:60063115 original size:27 final size:27
Alignment explanation
Indices: 60063084--60063288 Score: 173
Period size: 27 Copynumber: 7.6 Consensus size: 27
60063074 ACATAGGGGT
* *
60063084 AAAACAATCATCTTACCATAAAAGGGC
1 AAAACAATCATTTTACCATATAAGGGC
*
60063111 AAAACAATCATTTTACCACATAAGGGC
1 AAAACAATCATTTTACCATATAAGGGC
*
60063138 AAAA-ATAGTCATTTTACC-TCATAAGGGG
1 AAAACA-A-TCATTTTACCAT-ATAAGGGC
* * * * * *
60063166 AAAATAGTAATTTTGCCTTACAAGGGC
1 AAAACAATCATTTTACCATATAAGGGC
* * *
60063193 AAAATAGTCATTTTACCACATAAGGGC
1 AAAACAATCATTTTACCATATAAGGGC
* *
60063220 AAAACAATCATTTTACC-TCGTAAAGGC
1 AAAACAATCATTTTACCAT-ATAAGGGC
* * *
60063247 AAAACAATCATTTTACCCTATAAGAGA
1 AAAACAATCATTTTACCATATAAGGGC
* *
60063274 AAAATAGTCATTTTA
1 AAAACAATCATTTTA
60063289 TTAATTTAGG
Statistics
Matches: 145, Mismatches: 26, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.01
27 120 0.83
28 23 0.16
29 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (27 bp):
AAAACAATCATTTTACCATATAAGGGC
Done.