Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 184 of 290
Found at i:63015899 original size:50 final size:49
Alignment explanation
Indices: 63015820--63015914 Score: 154
Period size: 50 Copynumber: 1.9 Consensus size: 49
63015810 CTGTTTCGCG
* *
63015820 GTTCAGCAGCTTTGACCACTCTTCACTAAAAATTTAATTATCTTTTTCTA
1 GTTCAGCAACTCTGACCACTCTTCACT-AAAATTTAATTATCTTTTTCTA
*
63015870 GTTCAGCAACTCTGACCACTCTTCGCTAAAATTTAATTATCTTTT
1 GTTCAGCAACTCTGACCACTCTTCACTAAAATTTAATTATCTTTT
63015915 GCTACCAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
49 18 0.43
50 24 0.57
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.41
Consensus pattern (49 bp):
GTTCAGCAACTCTGACCACTCTTCACTAAAATTTAATTATCTTTTTCTA
Found at i:63016714 original size:48 final size:48
Alignment explanation
Indices: 63016601--63016734 Score: 153
Period size: 48 Copynumber: 2.8 Consensus size: 48
63016591 GTTACATGTT
* ** * * *
63016601 TAACTGTGGTATATCCTTTTAGTACCATGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
63016648 TAACCGTGGCATAACCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
63016696 TAATCGTGGTATATCCACTTAGCACCACATTACACGTAT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
63016735 AACCGAGGTA
Statistics
Matches: 72, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
47 25 0.35
48 47 0.65
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:63023718 original size:38 final size:37
Alignment explanation
Indices: 63023675--63023750 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 37
63023665 TTTCAAATTA
* * *
63023675 ACATGTATAACTGTGGCATATCCACTTAGCACTACGTT
1 ACATGTATAACCGTGGCATATCCACATAG-ACCACGTT
* *
63023713 ACATGTTTAACCGTGGTATATCCACATAGACCACGTT
1 ACATGTATAACCGTGGCATATCCACATAGACCACGTT
63023750 A
1 A
63023751 ATGAATCAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
37 8 0.24
38 25 0.76
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (37 bp):
ACATGTATAACCGTGGCATATCCACATAGACCACGTT
Found at i:63023828 original size:48 final size:48
Alignment explanation
Indices: 63023720--63023852 Score: 162
Period size: 48 Copynumber: 2.8 Consensus size: 48
63023710 GTTACATGTT
* * *
63023720 TAACCGTGGTATATCCACATAG-ACCACGTTA-ATGAATCAATATATG
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* *** *
63023766 TAACCGTTACATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* *
63023814 TAATCATGGTATATCCACTTAGCACCACGTTACACGTAT
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTAT
63023853 AACCGTGGTA
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
46 18 0.25
47 9 0.12
48 46 0.63
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (48 bp):
TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:63034353 original size:68 final size:66
Alignment explanation
Indices: 63034281--63034452 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
63034271 CATCATGTGT
* * * *
63034281 ACAAGAGAGCTACAAGACATTATTATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TA-TATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
63034344 TGTAG
62 TGTAG
** * *
63034349 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
63034414 AG
65 AG
* * * *
63034416 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
63034453 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 25 0.28
65 2 0.02
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:63034385 original size:64 final size:64
Alignment explanation
Indices: 63034230--63034488 Score: 211
Period size: 68 Copynumber: 3.9 Consensus size: 64
63034220 TGGATGATAC
* ** * ** * *
63034230 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGGGTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGCTAC
63034294 AAG
64 --G
* *
63034297 ACATTATTATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC
1 AGA-TA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC
63034362 G
64 G
* * * * * *
63034363 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTA
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTA
63034428 CG
63 CG
* * * *
63034430 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
63034489 CGAACTATAT
Statistics
Matches: 156, Mismatches: 29, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 26 0.17
65 2 0.01
66 23 0.15
67 35 0.22
68 49 0.31
69 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:63035950 original size:653 final size:641
Alignment explanation
Indices: 63034707--63036003 Score: 2058
Period size: 653 Copynumber: 2.0 Consensus size: 641
63034697 TGGTGACCTT
* *
63034707 GTGATCATGGGCCTATACTTGTGATGTATGAAATGTGGTGAAAATGATTTGTGATATGTATGTTA
1 GTGATAATGGGCCTATACTTGTGATGTATGAAATGTGATGAAAATGATTTGTGATATGTATGTTA
*
63034772 AAATGAGGTTAATACAAAGAAAGTGTGAAAAAGTGAATTAGCAATAAAACTGTTTTGGACAGTAG
66 AAACGAGGTTAATACAAAGAAAGTGTGAAAAAGTGAATTAGCAATAAAACTGTTTTGGACAGTAG
* * *
63034837 CAGTGACGTGATTTTGAAAAATCACCAAAAATAGTAGAAATTGACTCAATGAGATATCAAATTAA
131 CAGTAACGTGACTTTGAAAAATCACCAAAAATAGTAAAAATTGACTCAATGAGATATCAAATTAA
* * * *
63034902 ATATTAATGCGTCTATTTTCATATAAAAGAAATAGAGCAATAAAAGGAGTTCTATATTTTGAGAT
196 ATATTAATGAGTCTATTTTCATATAAAAGAAACAGAGAAAGAAAAGGAGTTCTATATTTTGAGAT
63034967 ATTTATGTTTTTGTGAGACTGGTTCAGAATGATTACGTGATCCCCTGTTCTGACTTTGGAAAATC
261 ATTTATGTTTTTGTGAGACTGGTTCAGAATGATTACGTGATCCCCTGTTCTGACTTTGGAAAATC
* * * * * *
63035032 AAAACAGTTTGGATAAAAATAATTTGAGGATTAAACTTATATTTTTGAAATACCTAATGAGTCTA
326 AAAACAATTTGGAGAAAAATAATTAGAGGATCAAACTTATATTTTTAAAATACCTAATGAGTATA
* *
63035097 TTTTTAAGATAAATCAACAAGAACATTATCCGAGTTCTGTACTGTGAGATAATTAATTTTTAGTA
391 TTTTCAAGATAAATCAACAAGAACATTATCCGAGTTATGTACTGTGAGATAATTAATTTTTAGTA
*
63035162 AAGAGAGGTCAGAACTGTCAGAAAGTGAAACAGGGGAAATTTTAATGAATAAACTATACTAATTG
456 AAGAGAGGTCAGAACTGTCAGAAAGTGAAACAGGGGAAAATTTAATGAATAAACTATACTAATTG
* * *
63035227 GATGAACCAAAAATTATGAAAATTTTATGGTGTAAAGATATGTGAGTCTAGTTTTAGCGAAAATT
521 GATAAACCAAAAATTATGAAAATTTTATGATGGAAAGATATGTGAGTCTAGTTTTAGCGAAAATT
* * *
63035292 TACGGATCTTAATTTGGAGCTTTGTAGCTCGAATCATAAATAAGTAAGTGACTATGACTC
586 TACGGATCTTAATTTGGAGCTCTATAGCTCGAAT--T--ATAAATAAGTGACTATGACTC
63035352 GTGATAATGGGCCTATACTTGTGATGTATGAAATGTGATGAAAATGATTTGTGATATGTATGTTA
1 GTGATAATGGGCCTATACTTGTGATGTATGAAATGTGATGAAAATGATTTGTGATATGTATGTTA
*
63035417 AAACGAGGTTAATACAAAGAAAGTGTGAAAGAGTGAATTAGCAATAAAACTGTTTTGGACAGTAG
66 AAACGAGGTTAATACAAAGAAAGTGTGAAAAAGTGAATTAGCAATAAAACTGTTTTGGACAGTAG
*
63035482 CAGTAACGTGACTTTGAAAAATCACCAAAAATAGTATAAAATGAATCAGAGACTGAATGAGATAT
131 CAGTAACGTGACTTTGAAAAATCACCAAAAATAGTA-AAAAT---T----GACTCAATGAGATAT
* * * * * *
63035547 CAATTTAAATCTTAATGAGTCTATTTTCATATAAAATAAACATATAAAGCAAAGGAGTTCTATAT
188 CAAATTAAATATTAATGAGTCTATTTTCATATAAAAGAAACAGAGAAAGAAAAGGAGTTCTATAT
63035612 TTTGAGATATTTATGTTTTTGTGAGACTGGTTCAGAATGATTACGTGATCCCCTGTTCTGACTTT
253 TTTGAGATATTTATGTTTTTGTGAGACTGGTTCAGAATGATTACGTGATCCCCTGTTCTGACTTT
*
63035677 GGAAAATCACAAA-AATTTGGAGAAAAATAATTAGAGGCTCAAACTTATATTTTTAAAAT-CCTT
318 GGAAAATCA-AAACAATTTGGAGAAAAATAATTAGAGGATCAAACTTATATTTTTAAAATACC-T
* *
63035740 AATGAGTATATTTTCAATATAAATCAACAATAACATTATCCGAGTTATGTACTGTGAGATAATTA
381 AATGAGTATATTTTCAAGATAAATCAACAAGAACATTATCCGAGTTATGTACTGTGAGATAATTA
* * *
63035805 ATTTTTAGTGAAGAGAGGTCATAACTGTCAGAAAGTGAAATAGGGGAAAATTTAATGAATAAACT
446 ATTTTTAGTAAAGAGAGGTCAGAACTGTCAGAAAGTGAAACAGGGGAAAATTTAATGAATAAACT
* *
63035870 GTACTAATTGGCTAAACCAAAAATTATGAAAATTTTATGATGGAAAGATATGTGAGTCTAGTTTT
511 ATACTAATTGGATAAACCAAAAATTATGAAAATTTTATGATGGAAAGATATGTGAGTCTAGTTTT
* * *
63035935 AGGGGAAATTTACGGATCTTAATTTGGAGCTCTATAGCTCTAATTATAAATAAGTGACTATGACT
576 AGCGAAAATTTACGGATCTTAATTTGGAGCTCTATAGCTCGAATTATAAATAAGTGACTATGACT
63036000 C
641 C
63036001 GTG
1 GTG
63036004 TGGACAGTTT
Statistics
Matches: 598, Mismatches: 44, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
645 160 0.27
646 4 0.01
649 24 0.04
651 1 0.00
652 2 0.00
653 404 0.68
654 3 0.01
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (641 bp):
GTGATAATGGGCCTATACTTGTGATGTATGAAATGTGATGAAAATGATTTGTGATATGTATGTTA
AAACGAGGTTAATACAAAGAAAGTGTGAAAAAGTGAATTAGCAATAAAACTGTTTTGGACAGTAG
CAGTAACGTGACTTTGAAAAATCACCAAAAATAGTAAAAATTGACTCAATGAGATATCAAATTAA
ATATTAATGAGTCTATTTTCATATAAAAGAAACAGAGAAAGAAAAGGAGTTCTATATTTTGAGAT
ATTTATGTTTTTGTGAGACTGGTTCAGAATGATTACGTGATCCCCTGTTCTGACTTTGGAAAATC
AAAACAATTTGGAGAAAAATAATTAGAGGATCAAACTTATATTTTTAAAATACCTAATGAGTATA
TTTTCAAGATAAATCAACAAGAACATTATCCGAGTTATGTACTGTGAGATAATTAATTTTTAGTA
AAGAGAGGTCAGAACTGTCAGAAAGTGAAACAGGGGAAAATTTAATGAATAAACTATACTAATTG
GATAAACCAAAAATTATGAAAATTTTATGATGGAAAGATATGTGAGTCTAGTTTTAGCGAAAATT
TACGGATCTTAATTTGGAGCTCTATAGCTCGAATTATAAATAAGTGACTATGACTC
Found at i:63043771 original size:18 final size:19
Alignment explanation
Indices: 63043744--63043782 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
63043734 TTTGTTTTTA
*
63043744 TTTTTCCTTTC-TTTAATT
1 TTTTTACTTTCATTTAATT
*
63043762 TTTTTACTTTCATTTCATT
1 TTTTTACTTTCATTTAATT
63043781 TT
1 TT
63043783 ATTATCTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTTACTTTCATTTAATT
Found at i:63045169 original size:28 final size:29
Alignment explanation
Indices: 63045113--63045169 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
63045103 GAATGCTGTC
* *
63045113 ATTGATGAACCTTGTGATTTTAGATGTTA
1 ATTGATGAACCTTGAGATATTAGATGTTA
* *
63045142 ATTGATGAA-TTTGAGATATTAGTTGTTA
1 ATTGATGAACCTTGAGATATTAGATGTTA
63045170 TTTAAGAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.46
Consensus pattern (29 bp):
ATTGATGAACCTTGAGATATTAGATGTTA
Found at i:63046367 original size:35 final size:35
Alignment explanation
Indices: 63046321--63046390 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
63046311 GTGTTCAGGA
63046321 AAGAGTGGTAAGGTTTAAATTATGTAATTTTTTAT
1 AAGAGTGGTAAGGTTTAAATTATGTAATTTTTTAT
63046356 AAGAGTGGTAAGGTTTAAATTATGTAATTTTTTAT
1 AAGAGTGGTAAGGTTTAAATTATGTAATTTTTTAT
63046391 GAAATGGTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (35 bp):
AAGAGTGGTAAGGTTTAAATTATGTAATTTTTTAT
Found at i:63047110 original size:15 final size:16
Alignment explanation
Indices: 63047090--63047119 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63047080 TGGTGCCTTG
63047090 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
63047105 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
63047120 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:63055957 original size:33 final size:35
Alignment explanation
Indices: 63055919--63055999 Score: 96
Period size: 33 Copynumber: 2.4 Consensus size: 35
63055909 GCTTAAGCCC
*
63055919 ATTCAGATAACAGTGATACTGGGCCAGAG-CCCTT
1 ATTCAGATAACAGTGAAACTGGGCCAGAGCCCCTT
* * **
63055953 -TTCAGATTACA-TTAAACTGGGCCTTAGCCCCTT
1 ATTCAGATAACAGTGAAACTGGGCCAGAGCCCCTT
63055986 ATTCAGATAACAGT
1 ATTCAGATAACAGT
63056000 ATGGCCTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
32 12 0.32
33 15 0.39
34 10 0.26
35 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (35 bp):
ATTCAGATAACAGTGAAACTGGGCCAGAGCCCCTT
Found at i:63057649 original size:24 final size:24
Alignment explanation
Indices: 63057610--63057715 Score: 149
Period size: 24 Copynumber: 4.4 Consensus size: 24
63057600 GCCGGCCAAC
* *
63057610 TCCTACTCCTTGATCAACTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
*
63057635 TCTTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
63057659 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
63057683 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
63057707 TCTTCTCCT
1 TCCTCTCCT
63057716 GACAGCCTTT
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
24 71 0.96
25 3 0.04
ACGTcount: A:0.21, C:0.39, G:0.04, T:0.37
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:63058433 original size:40 final size:40
Alignment explanation
Indices: 63058372--63058465 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
63058362 TCTCGGTATT
*
63058372 GCACACTTAGTGCCTCATATAGCCGAAGCTA-TTCCAACAC
1 GCACACTTAGTGCCTCATATAGCAGAAGCTATTTCCAAC-C
* * *
63058412 GCACACTTAGTGCCAT-TTATAGCAGGAGCTATTTCGAACC
1 GCACACTTAGTGCC-TCATATAGCAGAAGCTATTTCCAACC
63058452 GCACACTTAGTGCC
1 GCACACTTAGTGCC
63058466 GAGCATAGTC
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
40 41 0.85
41 7 0.15
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (40 bp):
GCACACTTAGTGCCTCATATAGCAGAAGCTATTTCCAACC
Found at i:63074917 original size:55 final size:53
Alignment explanation
Indices: 63074789--63075287 Score: 413
Period size: 55 Copynumber: 9.5 Consensus size: 53
63074779 AACTTACCAT
* ** * *
63074789 TGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-GAACTTACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* *
63074842 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * *
63074897 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAGCTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * *
63074950 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTAT-AGAACTCATCAA
* * * * *
63075005 TGCCATGTCTTGACATGGTCTTCCATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
* * ***
63075059 TGCCATGCCTTGGCATGGTCTTACATGATA---T-CCTTATCTTAC-CA--AA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
** * * *
63075105 TGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATAAA
1 TGCCATG--CCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * ***
63075160 TGCCATGCCTTGGCATGGTCTTACATGATA---T-CCTTATCTTAC-CA--AA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
** * *
63075206 TGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAA
1 TGCCATG--CCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
*
63075261 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
63075288 ATATCCTTAT
Statistics
Matches: 351, Mismatches: 65, Indels: 59
0.74 0.14 0.12
Matches are distributed among these distances:
46 18 0.05
47 32 0.09
48 6 0.02
49 15 0.04
50 2 0.01
51 2 0.01
52 18 0.05
53 85 0.24
54 66 0.19
55 103 0.29
56 4 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:63075127 original size:47 final size:47
Alignment explanation
Indices: 63075072--63075348 Score: 229
Period size: 47 Copynumber: 5.6 Consensus size: 47
63075062 CATGCCTTGG
63075072 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * * ***
63075119 CATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATAAATGCCATG--CCTTGG
1 CATGGTCTTACATGATATCCTTATC-T-T---AC---CAAATGCCATGTTCC-AAA
63075173 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * * ***
63075220 CATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATG--CCTTGG
1 CATGGTCTTACATGATATCCTTATC-T-T---AC-CA--AATGCCATGTTCC-AAA
*
63075274 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATATTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
63075321 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTATCTTA
63075349 GTGCCAATGC
Statistics
Matches: 181, Mismatches: 27, Indels: 44
0.72 0.11 0.17
Matches are distributed among these distances:
46 18 0.10
47 72 0.40
48 7 0.04
49 6 0.03
52 6 0.03
53 7 0.04
54 46 0.25
55 19 0.10
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:63075140 original size:101 final size:101
Alignment explanation
Indices: 63074801--63075348 Score: 672
Period size: 101 Copynumber: 5.3 Consensus size: 101
63074791 CCATGTCTTG
** *
63074801 ACATGGTCTTATGTGGTATCCTTGCCTTAT-GAACTTACCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
* * * ***
63074865 CATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATG-TCTTG
66 CAT--GA--TAT-CCTTAT-CTTAC-CA--AATGCCATGTTCCAA
* * *
63074909 ACATGGTCTTACATGGTATCCTTGCCTTAT-GAGCTCACCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
* * * ***
63074973 CATGGGACCTTTGCCTTATAATAACTCATCAATGCCATG-TCTTG
66 CAT--GA--TAT-CCTTAT-CTTAC-CA--AATGCCATGTTCCAA
* * *
63075017 ACATGGTCTTCCATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
63075082 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
* *
63075118 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATAAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
63075183 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
*
63075219 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
*
63075284 CATGATATCCTTATCTTACCAAATGCCATATTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
*
63075320 ACATGGTCTTACATGGTATCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTA
63075349 GTGCCAATGC
Statistics
Matches: 414, Mismatches: 24, Indels: 11
0.92 0.05 0.02
Matches are distributed among these distances:
100 9 0.02
101 226 0.55
102 2 0.00
103 3 0.01
104 6 0.01
105 2 0.00
107 2 0.00
108 130 0.31
109 34 0.08
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.35
Consensus pattern (101 bp):
ACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
Found at i:63077727 original size:37 final size:36
Alignment explanation
Indices: 63077677--63077750 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 36
63077667 CCAATTGAGC
63077677 TTTGAACCATTAAAACCCTAATTCTCCTTTTTTTCTT
1 TTTGAACCATTAAAACCCTAATTCTCC-TTTTTTCTT
63077714 TTTGAACCATTAAAACCCTAATTCTCCTTTTTTCTT
1 TTTGAACCATTAAAACCCTAATTCTCCTTTTTTCTT
63077750 T
1 T
63077751 CCTTTTTTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 10 0.27
37 27 0.73
ACGTcount: A:0.24, C:0.24, G:0.03, T:0.49
Consensus pattern (36 bp):
TTTGAACCATTAAAACCCTAATTCTCCTTTTTTCTT
Found at i:63077900 original size:43 final size:44
Alignment explanation
Indices: 63077819--63077905 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 44
63077809 TTTTATTTAT
*
63077819 TTATTATAATATAATATAATATATTTAATTAACTTTTAAGTTTTC
1 TTATTATAATAT-ATATAATATATTTAATTAACTTTTAAATTTTC
**
63077864 TTATTATAATAT-TATAATATATGTTTTTTAAC-TTTAAATTTT
1 TTATTATAATATATATAATATAT-TTAATTAACTTTTAAATTTT
63077906 TAAATAAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 19 0.50
44 7 0.18
45 12 0.32
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.56
Consensus pattern (44 bp):
TTATTATAATATATATAATATATTTAATTAACTTTTAAATTTTC
Found at i:63080377 original size:64 final size:64
Alignment explanation
Indices: 63080222--63080480 Score: 202
Period size: 68 Copynumber: 3.9 Consensus size: 64
63080212 TGGATGATAC
* ** * ** * *
63080222 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGGGTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGCTAC
63080286 AAG
64 --G
* *
63080289 ACATTATTATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC
1 AGA-TA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC
63080354 G
64 G
* * * * * * *
63080355 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACATCATGTAGACAAGAGAGCTA
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTA
63080420 CG
63 CG
* * * *
63080422 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
63080481 CGAACTATAT
Statistics
Matches: 154, Mismatches: 31, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 26 0.17
65 2 0.01
66 23 0.15
67 34 0.22
68 49 0.32
69 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:63081495 original size:15 final size:16
Alignment explanation
Indices: 63081475--63081504 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63081465 CATGGAACTA
63081475 TGGTAT-ATGAAATAT
1 TGGTATAATGAAATAT
63081490 TGGTATAATGAAATA
1 TGGTATAATGAAATA
63081505 AATGATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (16 bp):
TGGTATAATGAAATAT
Found at i:63082576 original size:20 final size:20
Alignment explanation
Indices: 63082551--63082595 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
63082541 AGGGGCTAAA
* *
63082551 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTATAAAATTTG
*
63082571 ATGAAAAATTATAAAATTTT
1 ATGAAAAATTATAAAATTTG
63082591 ATGAA
1 ATGAA
63082596 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:63087304 original size:39 final size:39
Alignment explanation
Indices: 63087250--63087328 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
63087240 TGGAAAGAGA
63087250 AAAAAAATATTGCGGGTAGTGTGCTAAAGGCCTATAGAC
1 AAAAAAATATTGCGGGTAGTGTGCTAAAGGCCTATAGAC
63087289 AAAAAAATATTGCGGGTAGTGTGCTAAAGGCCTATAGAC
1 AAAAAAATATTGCGGGTAGTGTGCTAAAGGCCTATAGAC
63087328 A
1 A
63087329 TATATTGCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.23
Consensus pattern (39 bp):
AAAAAAATATTGCGGGTAGTGTGCTAAAGGCCTATAGAC
Found at i:63092006 original size:11 final size:10
Alignment explanation
Indices: 63091980--63092013 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
63091970 GGAGAGCACC
*
63091980 AAGAGTCAAA
1 AAGAGCCAAA
63091990 AAGAGCCAAA
1 AAGAGCCAAA
63092000 AATGAGCCAAA
1 AA-GAGCCAAA
63092011 AAG
1 AAG
63092014 GGATAAAACG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.59, C:0.15, G:0.21, T:0.06
Consensus pattern (10 bp):
AAGAGCCAAA
Found at i:63095577 original size:56 final size:56
Alignment explanation
Indices: 63095491--63095607 Score: 207
Period size: 56 Copynumber: 2.1 Consensus size: 56
63095481 TCTTAGTAGG
*
63095491 GAAGTATGATATATGTGAGCCCTTGTGGCTAATTCTGTCAAATGCGCCTTTGTGGT
1 GAAGTATGATATATGTGAGCCCTTGTGGCTAATTCTGTCAAATGCACCTTTGTGGT
* *
63095547 GAAGTATGTTATATGTGAGCCCTTGTGGCTAATTCTGTTAAATGCACCTTTGTGGT
1 GAAGTATGATATATGTGAGCCCTTGTGGCTAATTCTGTCAAATGCACCTTTGTGGT
63095603 GAAGT
1 GAAGT
63095608 CTGTCATGTG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.37
Consensus pattern (56 bp):
GAAGTATGATATATGTGAGCCCTTGTGGCTAATTCTGTCAAATGCACCTTTGTGGT
Found at i:63095585 original size:29 final size:29
Alignment explanation
Indices: 63095500--63095586 Score: 90
Period size: 29 Copynumber: 3.1 Consensus size: 29
63095490 GGAAGTATGA
63095500 TATATGTGAGCCCTTGTGGCTAATTCTGT
1 TATATGTGAGCCCTTGTGGCTAATTCTGT
* * * * * *
63095529 CA-A-ATGCGCCTTTGTGG-TGAAGTATGT
1 TATATGTGAGCCCTTGTGGCT-AATTCTGT
63095556 TATATGTGAGCCCTTGTGGCTAATTCTGT
1 TATATGTGAGCCCTTGTGGCTAATTCTGT
63095585 TA
1 TA
63095587 AATGCACCTT
Statistics
Matches: 42, Mismatches: 12, Indels: 8
0.68 0.19 0.13
Matches are distributed among these distances:
26 1 0.02
27 18 0.43
28 2 0.05
29 20 0.48
30 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.25, T:0.39
Consensus pattern (29 bp):
TATATGTGAGCCCTTGTGGCTAATTCTGT
Found at i:63095610 original size:27 final size:27
Alignment explanation
Indices: 63095524--63095611 Score: 79
Period size: 27 Copynumber: 3.2 Consensus size: 27
63095514 TGTGGCTAAT
* *
63095524 TCTGTCAAATGCGCCTTTGTGGTGAAG
1 TCTGTTAAATGCACCTTTGTGGTGAAG
* * * * *
63095551 TATGTTATATGTGAGCCCTTGTGGCT-AAT
1 TCTGTTAAATG-CA-CCTTTGTGG-TGAAG
63095580 TCTGTTAAATGCACCTTTGTGGTGAAG
1 TCTGTTAAATGCACCTTTGTGGTGAAG
63095607 TCTGT
1 TCTGT
63095612 CATGTGGATG
Statistics
Matches: 45, Mismatches: 12, Indels: 8
0.69 0.18 0.12
Matches are distributed among these distances:
26 1 0.02
27 23 0.51
28 1 0.02
29 19 0.42
30 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (27 bp):
TCTGTTAAATGCACCTTTGTGGTGAAG
Found at i:63095632 original size:56 final size:56
Alignment explanation
Indices: 63095491--63095633 Score: 182
Period size: 56 Copynumber: 2.6 Consensus size: 56
63095481 TCTTAGTAGG
* *
63095491 GAAGTATGAT-ATATGTGAGCCCTTGTGGCTAATTCTGTCAAATGCGCCTTTGTGGT
1 GAAGTATG-TCATATGTGAGCCCTTATGGCTAATTCTGTCAAATGCACCTTTGTGGT
* * *
63095547 GAAGTATGTTATATGTGAGCCCTTGTGGCTAATTCTGTTAAATGCACCTTTGTGGT
1 GAAGTATGTCATATGTGAGCCCTTATGGCTAATTCTGTCAAATGCACCTTTGTGGT
* * *
63095603 GAAGTCTGTCATGTG-GATGCCTTTATGGCTA
1 GAAGTATGTCATATGTGA-GCCCTTATGGCTA
63095634 TCTATCTGTA
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
55 3 0.04
56 75 0.96
ACGTcount: A:0.21, C:0.15, G:0.27, T:0.37
Consensus pattern (56 bp):
GAAGTATGTCATATGTGAGCCCTTATGGCTAATTCTGTCAAATGCACCTTTGTGGT
Found at i:63112751 original size:30 final size:30
Alignment explanation
Indices: 63112694--63112751 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
63112684 TTTTCGAGCA
**
63112694 TAGGGGCAAAATAGTCATTTTGTCAAAGTC
1 TAGGGGCAAAATAGTCATTTTACCAAAGTC
*
63112724 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATAGTCATTTTACCAAAG
63112752 ATGTGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATAGTCATTTTACCAAAGTC
Found at i:63113147 original size:46 final size:47
Alignment explanation
Indices: 63113091--63113258 Score: 175
Period size: 47 Copynumber: 3.6 Consensus size: 47
63113081 TGATTTGTGC
63113091 GCTAGTGTAAGA-CATGTCTGGGACATGCTTCGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGCTTCGGCCACATTATGAGA
* * * * *
63113137 GCTAGAGTAAGACCATGTCTGGGACATGGCATCGG-CATC-TAGACGAGG
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCTTCGGCCA-CAT-TATGAGA
* * * *
63113185 GCTAGTGTAAGA-CATGTCTGGGACATGCATT-AGCCATACTATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGC-TTCGGCCACATTATGAGA
*
63113231 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGACCATGTCTGGGACATG
63113259 GCATCGGCAC
Statistics
Matches: 99, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
46 28 0.28
47 49 0.49
48 22 0.22
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCTTCGGCCACATTATGAGA
Found at i:63113252 original size:94 final size:94
Alignment explanation
Indices: 63113091--63113267 Score: 284
Period size: 94 Copynumber: 1.9 Consensus size: 94
63113081 TGATTTGTGC
* * *
63113091 GCTAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCTAGAGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCTTCAGCCACACTATGAGAGCCAGAGTAAGACCATGTC
63113156 TGGGACATGGCATCGGCATCTAGACGAGG
66 TGGGACATGGCATCGGCATCTAGACGAGG
* * *
63113185 GCTAGTGTAAGACATGTCTGGGACATGCATT-AGCCATACTATGATAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGC-TTCAGCCACACTATGAGAGCCAGAGTAAGACCATGT
63113249 CTGGGACATGGCATCGGCA
65 CTGGGACATGGCATCGGCA
63113268 CAGAGATGAG
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
94 74 0.97
95 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCTTCAGCCACACTATGAGAGCCAGAGTAAGACCATGTC
TGGGACATGGCATCGGCATCTAGACGAGG
Found at i:63113286 original size:46 final size:47
Alignment explanation
Indices: 63113094--63113286 Score: 138
Period size: 47 Copynumber: 4.1 Consensus size: 47
63113084 TTTGTGCGCT
* * *
63113094 AGTGTAAGA-CATGTCTGGGACAT-GCTTCGGCCACATTATGA-GAGCT-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACA-GACGATGAG-TG
* *
63113140 AGAGTAAGACCATGTCTGGGACATGGCATCGGCATCTAGACGA-GGGCT-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-C-AGACGATGAG-TG
** * *
63113188 AGTGTAAGA-CATGTCTGGGACAT-GCATTAGC-CATACTATGA-TAG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGATGAGT-G
63113232 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGA-GATGAGTG
1 --AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGATGAGTG
*
63113280 ACTGTAA
1 AGTGTAA
63113287 CACCCCCTTA
Statistics
Matches: 118, Mismatches: 16, Indels: 26
0.74 0.10 0.16
Matches are distributed among these distances:
42 1 0.01
43 4 0.03
44 2 0.02
46 29 0.25
47 44 0.37
48 33 0.28
49 5 0.04
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACGATGAGTG
Found at i:63113496 original size:15 final size:15
Alignment explanation
Indices: 63113476--63113507 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
63113466 AGTATTCCAA
63113476 TTTTATTATTATTAT
1 TTTTATTATTATTAT
*
63113491 TTTTATTTTTATTAT
1 TTTTATTATTATTAT
63113506 TT
1 TT
63113508 CTTTTCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTATTATTATTAT
Found at i:63113512 original size:18 final size:17
Alignment explanation
Indices: 63113476--63113535 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 17
63113466 AGTATTCCAA
*
63113476 TTTTATTATTATTAT-TT
1 TTTTTTTATTATT-TCTT
63113493 TTATTTTTATTATTTCTT
1 TT-TTTTTATTATTTCTT
*
63113511 TTCTTTTCTTTTATTTCTT
1 TT-TTTT-TATTATTTCTT
63113530 TTTTTT
1 TTTTTT
63113536 ATAAATTTCG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
17 3 0.08
18 22 0.59
19 12 0.32
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTTTTATTATTTCTT
Found at i:63114324 original size:6 final size:6
Alignment explanation
Indices: 63114313--63114343 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
63114303 ACAAATCTGA
*
63114313 AACAGT AACAGT AACAGT AACGGT AACAGT A
1 AACAGT AACAGT AACAGT AACAGT AACAGT A
63114344 TTCGACACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (6 bp):
AACAGT
Found at i:63122310 original size:55 final size:55
Alignment explanation
Indices: 63122225--63122333 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 55
63122215 GTCCATGCCC
* * *
63122225 GTGTTAATCTGACAGGTTCGACCACAGTTTCTTGGCACGGGTGTGTCGCACGCCA
1 GTGTTAATCTGACAGGTTCGACCACAGTTTCTAGGCACAGGCGTGTCGCACGCCA
* *
63122280 GTGTTAATTTGACAGGTTCGACCACGGTTTCTAGGCACAGGCGTGTCGCACGCC
1 GTGTTAATCTGACAGGTTCGACCACAGTTTCTAGGCACAGGCGTGTCGCACGCC
63122334 CATATTGTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.18, C:0.26, G:0.29, T:0.27
Consensus pattern (55 bp):
GTGTTAATCTGACAGGTTCGACCACAGTTTCTAGGCACAGGCGTGTCGCACGCCA
Found at i:63122682 original size:31 final size:30
Alignment explanation
Indices: 63122638--63122698 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
63122628 CTCCTCATTC
**
63122638 CTGCTATTTATCTCATCAAAATAAGATTTT
1 CTGCTATGAATCTCATCAAAATAAGATTTT
* *
63122668 NCTGCTATGAATCTCATTAAAATAAGGTTTT
1 -CTGCTATGAATCTCATCAAAATAAGATTTT
63122699 AGGCAGGTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.41
Consensus pattern (30 bp):
CTGCTATGAATCTCATCAAAATAAGATTTT
Found at i:63127053 original size:20 final size:19
Alignment explanation
Indices: 63127014--63127057 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
63127004 GTTTAGTCTA
63127014 TGATTGTGAAGTGAATATTT
1 TGATTGTGAAGTGAATA-TT
*
63127034 TGATTGTGAA-TTAATGATT
1 TGATTGTGAAGTGAAT-ATT
63127053 TGATT
1 TGATT
63127058 TAGCGTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.48
Consensus pattern (19 bp):
TGATTGTGAAGTGAATATT
Found at i:63131519 original size:13 final size:13
Alignment explanation
Indices: 63131501--63131528 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
63131491 ACGGAAAGAC
63131501 CCTATACCTTCAA
1 CCTATACCTTCAA
63131514 CCTATACCTTCAA
1 CCTATACCTTCAA
63131527 CC
1 CC
63131529 ATTTTCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.43, G:0.00, T:0.29
Consensus pattern (13 bp):
CCTATACCTTCAA
Found at i:63135022 original size:21 final size:21
Alignment explanation
Indices: 63134998--63135039 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
63134988 GCTAGGTAAG
63134998 CTTCATATTCTTTTCCCAAAT
1 CTTCATATTCTTTTCCCAAAT
63135019 CTTCATATTCTTTTCCCAAAT
1 CTTCATATTCTTTTCCCAAAT
63135040 ATTTCTCAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.48
Consensus pattern (21 bp):
CTTCATATTCTTTTCCCAAAT
Found at i:63137742 original size:23 final size:23
Alignment explanation
Indices: 63137712--63137759 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
63137702 ATATGAGATG
63137712 TTAATGGCCTAATTTCATACTTT
1 TTAATGGCCTAATTTCATACTTT
63137735 TTAATGGCCTAATTTCATACTTT
1 TTAATGGCCTAATTTCATACTTT
63137758 TT
1 TT
63137760 TTTAATTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.08, T:0.50
Consensus pattern (23 bp):
TTAATGGCCTAATTTCATACTTT
Found at i:63139472 original size:114 final size:115
Alignment explanation
Indices: 63139278--63139495 Score: 404
Period size: 114 Copynumber: 1.9 Consensus size: 115
63139268 TCTGAAGTTA
*
63139278 AAATATTTATTTTATTATTTTAATAAGGTTTAAAGTATGATAGATTAATTACGTGAAGGTTTCGT
1 AAATATTTATTTTATTATTTTAATAAGGTCTAAAGTATGATAGATTAATTACGTGAAGGTTTCGT
63139343 AAAGAAATTTTACTGTTTGAGTGCTCAATTTGATAAAAAGGTAGAAGTCG
66 AAAGAAATTTTACTGTTTGAGTGCTCAATTTGATAAAAAGGTAGAAGTCG
63139393 AAATATTTATTTT-TTATTTTAATAAGGTCTACAA-TATGATAGATTAATTACGTGAAGGTTTCG
1 AAATATTTATTTTATTATTTTAATAAGGTCTA-AAGTATGATAGATTAATTACGTGAAGGTTTCG
63139456 TAAAGAAATTTTACTGTTTGAGTGCTCAATTTGATAAAAA
65 TAAAGAAATTTTACTGTTTGAGTGCTCAATTTGATAAAAA
63139496 TTACTAAATC
Statistics
Matches: 101, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
114 86 0.85
115 15 0.15
ACGTcount: A:0.37, C:0.06, G:0.17, T:0.41
Consensus pattern (115 bp):
AAATATTTATTTTATTATTTTAATAAGGTCTAAAGTATGATAGATTAATTACGTGAAGGTTTCGT
AAAGAAATTTTACTGTTTGAGTGCTCAATTTGATAAAAAGGTAGAAGTCG
Found at i:63142337 original size:53 final size:51
Alignment explanation
Indices: 63142195--63142408 Score: 169
Period size: 52 Copynumber: 4.3 Consensus size: 51
63142185 TTGCACATAG
** * * *
63142195 TCACATATCACA-CAC-CGAAACCATAGCCCTA-CCATGGTCTTACATGG-A
1 TCACATATCACATCACTCGATGCCATAGCCC-AGCTATGGTCTTATACGGAA
* * *
63142243 TCACATAT--CAT-AC-CGATGCCATATCCCAGATATGGTATTATACGGAA
1 TCACATATCACATCACTCGATGCCATAGCCCAGCTATGGTCTTATACGGAA
* * *
63142290 TCACATTATCACATCACATCGATGCCATAGCTCAGCTATGTTCTTATATGGAAA
1 TCACA-TATCACATCAC-TCGATGCCATAGCCCAGCTATGGTCTTATACGG-AA
* * *
63142344 T-ACGTATCACATTGCACT-GATGGCAAAGCCCAGCTATGGTCTTATACGGAA
1 TCACATATCACA-T-CACTCGATGCCATAGCCCAGCTATGGTCTTATACGGAA
*
63142395 GCACATATCACATC
1 TCACATATCACATC
63142409 TTTTCCGTCA
Statistics
Matches: 131, Mismatches: 22, Indels: 24
0.74 0.12 0.14
Matches are distributed among these distances:
45 1 0.01
46 26 0.20
47 6 0.05
48 11 0.08
50 4 0.03
51 5 0.04
52 42 0.32
53 30 0.23
54 6 0.05
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (51 bp):
TCACATATCACATCACTCGATGCCATAGCCCAGCTATGGTCTTATACGGAA
Found at i:63149703 original size:38 final size:38
Alignment explanation
Indices: 63149661--63149735 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
63149651 TTGGGTGTTT
63149661 CTTTTAATCTTTTTATGGTTTGTTTAGTAGAGAAGCAA
1 CTTTTAATCTTTTTATGGTTTGTTTAGTAGAGAAGCAA
* *
63149699 CTTTTAATCTTTTTATGGTTTGTTTAGTGGAGGAGCA
1 CTTTTAATCTTTTTATGGTTTGTTTAGTAGAGAAGCA
63149736 GCAAGGCGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.23, C:0.08, G:0.21, T:0.48
Consensus pattern (38 bp):
CTTTTAATCTTTTTATGGTTTGTTTAGTAGAGAAGCAA
Found at i:63150560 original size:20 final size:20
Alignment explanation
Indices: 63150527--63150581 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
63150517 ATACGTGGGA
63150527 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
63150544 CTATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
*
63150565 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
63150582 GTATTCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
18 8 0.24
20 23 0.70
21 2 0.06
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:63150660 original size:26 final size:25
Alignment explanation
Indices: 63150631--63150714 Score: 91
Period size: 25 Copynumber: 3.4 Consensus size: 25
63150621 GAGGAAGTGC
63150631 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
* **
63150657 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATTG
* *
63150682 AAACGGGCTTTGCCCCA-ATTATT-
1 AAAAGGGCTTTGCCCCAGTTTATTG
63150705 AAAAGAGGCT
1 AAAAG-GGCT
63150715 AGGCCTCCAG
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
23 4 0.08
24 7 0.15
25 27 0.56
26 10 0.21
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:63158377 original size:20 final size:21
Alignment explanation
Indices: 63158342--63158398 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
63158332 TGATACGTGG
63158342 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
63158360 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
63158381 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
63158399 GTATTCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:63158495 original size:25 final size:25
Alignment explanation
Indices: 63158448--63158582 Score: 184
Period size: 25 Copynumber: 5.4 Consensus size: 25
63158438 GAGGAAGTGC
*
63158448 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
**
63158474 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATTG
63158499 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
63158525 AAAAGGGCTTTGCCCCAGTTTATTG
1 AAAAGGGCTTTGCCCCAGTTTATTG
* *
63158550 AAATGGGCTTTGCCCTAG-TTATT-
1 AAAAGGGCTTTGCCCCAGTTTATTG
63158573 AAAAGAGGCT
1 AAAAG-GGCT
63158583 AGGCCTCTAG
Statistics
Matches: 99, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
23 4 0.04
24 9 0.09
25 53 0.54
26 33 0.33
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:63158524 original size:51 final size:51
Alignment explanation
Indices: 63158448--63158582 Score: 195
Period size: 51 Copynumber: 2.7 Consensus size: 51
63158438 GAGGAAGTGC
*
63158448 AAAAGGGCTTATGCCCCAATTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
**
63158499 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
* *
63158550 AAATGGGCTT-TGCCCTAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
63158583 AGGCCTCTAG
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
48 5 0.06
49 9 0.12
50 7 0.09
51 57 0.73
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:63158704 original size:46 final size:46
Alignment explanation
Indices: 63158652--63158743 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
63158642 TGAATCATTC
* *
63158652 CCCACATGGTGTGTTGGTTGGTACGGGTGGAGAGTAGCGGATGATG
1 CCCACATGGTGGGTTGGTTGGGACGGGTGGAGAGTAGCGGATGATG
63158698 CCCACATGGTGGGTTGGTTGGGACGGGTGGAGAGTAGCGGATGATG
1 CCCACATGGTGGGTTGGTTGGGACGGGTGGAGAGTAGCGGATGATG
63158744 GGTCGAGTAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.17, C:0.13, G:0.46, T:0.24
Consensus pattern (46 bp):
CCCACATGGTGGGTTGGTTGGGACGGGTGGAGAGTAGCGGATGATG
Found at i:63160788 original size:46 final size:46
Alignment explanation
Indices: 63160738--63160910 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
63160728 TGGTTGAGCA
*
63160738 TCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
63160784 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
63160829 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
63160877 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63160911 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63160894 original size:93 final size:93
Alignment explanation
Indices: 63160735--63160905 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
63160725 GGATGGTTGA
* *
63160735 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63160800 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
63160828 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63160893 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63160906 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:63161826 original size:31 final size:31
Alignment explanation
Indices: 63161788--63161850 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
63161778 AAATTCATAA
63161788 TAAATTGTAAAAAAATAATTAGAAGTCATTC
1 TAAATTGTAAAAAAATAATTAGAAGTCATTC
63161819 TAAATTGTAAAAAAATAATTAGAAGTCATTC
1 TAAATTGTAAAAAAATAATTAGAAGTCATTC
63161850 T
1 T
63161851 TTATATTTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.51, C:0.06, G:0.10, T:0.33
Consensus pattern (31 bp):
TAAATTGTAAAAAAATAATTAGAAGTCATTC
Found at i:63165093 original size:29 final size:28
Alignment explanation
Indices: 63165046--63165173 Score: 148
Period size: 28 Copynumber: 4.5 Consensus size: 28
63165036 CATGAGATTG
* * **
63165046 GCACTAAGTGTGTGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-AATTATATA
* *
63165075 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
* *
63165103 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTAATTATAT-A
*
63165132 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTATATA
*
63165160 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
63165174 GACTTACTAT
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 45 0.51
29 43 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATATA
Found at i:63165112 original size:28 final size:28
Alignment explanation
Indices: 63165072--63165173 Score: 168
Period size: 28 Copynumber: 3.6 Consensus size: 28
63165062 TTTAAATTGC
*
63165072 ATAGCACTAAGTGTGCAAGTTTGATTAT
1 ATAGCACTAAGTGTGCGAGTTTGATTAT
63165100 ATAGCACTAAGTGTGCGAGTTTGATTAT
1 ATAGCACTAAGTGTGCGAGTTTGATTAT
*
63165128 GTAAGCACTAAGTGTGCGAGTTTGATTAT
1 AT-AGCACTAAGTGTGCGAGTTTGATTAT
*
63165157 ATAACACTAAGTGTGCG
1 ATAGCACTAAGTGTGCG
63165174 GACTTACTAT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 42 0.61
29 27 0.39
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (28 bp):
ATAGCACTAAGTGTGCGAGTTTGATTAT
Found at i:63181537 original size:32 final size:32
Alignment explanation
Indices: 63181501--63181571 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
63181491 AATACAATTG
* * *
63181501 TTCTAAATACAAGTTATTCCAAATA-ATGATTA
1 TTCTAAATACAA-CTATTCCAAAAACATCATTA
*
63181533 TTCTAAATATAACTATTCCAAAAACATCATTA
1 TTCTAAATACAACTATTCCAAAAACATCATTA
63181565 TTCTAAA
1 TTCTAAA
63181572 AAATTAATTG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 10 0.29
32 24 0.71
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (32 bp):
TTCTAAATACAACTATTCCAAAAACATCATTA
Found at i:63181712 original size:38 final size:38
Alignment explanation
Indices: 63181655--63181731 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
63181645 TTTCAACTAA
63181655 AGTCATGTTCTTAACATACTTATTCTTAAACAACAATT
1 AGTCATGTTCTTAACATACTTATTCTTAAACAACAATT
* *
63181693 AGTCGTGTTCTTAAGATACTTATTCTTAAACAACAATT
1 AGTCATGTTCTTAACATACTTATTCTTAAACAACAATT
63181731 A
1 A
63181732 TTTTGAGCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.39
Consensus pattern (38 bp):
AGTCATGTTCTTAACATACTTATTCTTAAACAACAATT
Found at i:63183614 original size:29 final size:29
Alignment explanation
Indices: 63183559--63183616 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
63183549 TTATAGGGAC
* *
63183559 TGAATCAAATTAGTCCCTCTATCATTAAA
1 TGAATCAAATTAATCCCTATATCATTAAA
63183588 TGAATCAAATTAATCCCTATAAT-ATTAAA
1 TGAATCAAATTAATCCCTAT-ATCATTAAA
63183617 AGGAACCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 24 0.92
30 2 0.08
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.34
Consensus pattern (29 bp):
TGAATCAAATTAATCCCTATATCATTAAA
Found at i:63184313 original size:1 final size:1
Alignment explanation
Indices: 63184309--63184359 Score: 75
Period size: 1 Copynumber: 51.0 Consensus size: 1
63184299 GAGTGAAGAC
***
63184309 AAAAAAAAAAAAAAAAAAAAAAGGTAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
63184360 GAAGAAGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.94, C:0.00, G:0.04, T:0.02
Consensus pattern (1 bp):
A
Found at i:63187556 original size:19 final size:18
Alignment explanation
Indices: 63187512--63187559 Score: 71
Period size: 18 Copynumber: 2.6 Consensus size: 18
63187502 AATTGAATTT
63187512 TATTTTATAATAAGATAA
1 TATTTTATAATAAGATAA
63187530 TATTTTATAATAA-ATAA
1 TATTTTATAATAAGATAA
63187547 TATCTTTTATAAT
1 TA--TTTTATAAT
63187560 TTAATAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.21
18 13 0.46
19 9 0.32
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (18 bp):
TATTTTATAATAAGATAA
Found at i:63192343 original size:27 final size:26
Alignment explanation
Indices: 63192283--63192344 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
63192273 ATAAGACTCC
63192283 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * * *
63192309 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
63192337 ATTTTATT
1 ATTTTATT
63192345 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 14 0.48
28 13 0.45
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:63192359 original size:10 final size:10
Alignment explanation
Indices: 63192340--63192371 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
63192330 TTTTAGGATT
63192340 TTAT-TTTAA
1 TTATCTTTAA
63192349 TTATCTTTAA
1 TTATCTTTAA
63192359 TTATCTTTAA
1 TTATCTTTAA
63192369 TTA
1 TTA
63192372 ATTGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:63194171 original size:16 final size:17
Alignment explanation
Indices: 63194135--63194197 Score: 73
Period size: 16 Copynumber: 4.0 Consensus size: 17
63194125 CCATTTTTAA
63194135 TTTTATTTTATT-TA-T
1 TTTTATTTTATTATATT
*
63194150 TATTATTTT-TTATATT
1 TTTTATTTTATTATATT
*
63194166 TTTTATTTTACTA-ATT
1 TTTTATTTTATTATATT
63194182 TTTTATTTTATT-TATT
1 TTTTATTTTATTATATT
63194198 ATTCTTATAC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
14 2 0.05
15 10 0.25
16 26 0.65
17 2 0.05
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTATTTTATTATATT
Found at i:63195358 original size:6 final size:6
Alignment explanation
Indices: 63195349--63195377 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
63195339 ATAAAAAGAG
63195349 GAAAAA GAAAAA -AAAAA GAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
63195378 TATTTATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:63195366 original size:11 final size:12
Alignment explanation
Indices: 63195349--63195377 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
63195339 ATAAAAAGAG
63195349 GAAAAAGAAAAA
1 GAAAAAGAAAAA
63195361 -AAAAAGAAAAA
1 GAAAAAGAAAAA
63195372 GAAAAA
1 GAAAAA
63195378 TATTTATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (12 bp):
GAAAAAGAAAAA
Found at i:63197755 original size:13 final size:12
Alignment explanation
Indices: 63197737--63197791 Score: 74
Period size: 13 Copynumber: 4.3 Consensus size: 12
63197727 TATAAGCAAC
63197737 CATTATCATCTTA
1 CATTATCAT-TTA
63197750 CATTATCATTTA
1 CATTATCATTTA
63197762 CCATTATCATTTTA
1 -CATTATCA-TTTA
*
63197776 TATTATCATTTA
1 CATTATCATTTA
63197788 CATT
1 CATT
63197792 CATTTTCCCA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
12 10 0.26
13 24 0.63
14 4 0.11
ACGTcount: A:0.31, C:0.18, G:0.00, T:0.51
Consensus pattern (12 bp):
CATTATCATTTA
Found at i:63197765 original size:26 final size:26
Alignment explanation
Indices: 63197735--63197788 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
63197725 CATATAAGCA
63197735 ACCATTATCATCTTACATTATCATTT
1 ACCATTATCATCTTACATTATCATTT
* *
63197761 ACCATTATCATTTTATATTATCATTT
1 ACCATTATCATCTTACATTATCATTT
63197787 AC
1 AC
63197789 ATTCATTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.00, T:0.48
Consensus pattern (26 bp):
ACCATTATCATCTTACATTATCATTT
Found at i:63210797 original size:42 final size:42
Alignment explanation
Indices: 63210738--63210818 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
63210728 TAAAAAACCA
* *
63210738 AACTCTTTGATTGCATCATTAGATTGAAGATTCCAACTTCCT
1 AACTCTTTGATTACATCATTAGAATGAAGATTCCAACTTCCT
63210780 AACTCTTTGATTACATCATTAGAATGAAGATTCCAACTT
1 AACTCTTTGATTACATCATTAGAATGAAGATTCCAACTT
63210819 TGAAAAGGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (42 bp):
AACTCTTTGATTACATCATTAGAATGAAGATTCCAACTTCCT
Found at i:63217107 original size:4 final size:4
Alignment explanation
Indices: 63217100--63217125 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
63217090 GCATCTCTCT
63217100 CTCC CTCC CTCC CTCC CTCC CTCC CT
1 CTCC CTCC CTCC CTCC CTCC CTCC CT
63217126 TTGTTGCAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.00, T:0.27
Consensus pattern (4 bp):
CTCC
Found at i:63219277 original size:19 final size:19
Alignment explanation
Indices: 63219253--63219300 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
63219243 TCTTTTTTTT
**
63219253 TTTTCTTATAATTTCATCA
1 TTTTCTTATAAACTCATCA
63219272 TTTTCTTATAAACTCATCA
1 TTTTCTTATAAACTCATCA
*
63219291 TATTCTTATA
1 TTTTCTTATA
63219301 TAACATATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (19 bp):
TTTTCTTATAAACTCATCA
Found at i:63220979 original size:38 final size:39
Alignment explanation
Indices: 63220936--63221011 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 39
63220926 TTAGATTTGA
*
63220936 TGTATGGTTTTGTTTCACCTTCATCTTACGTAT-ATTGT
1 TGTATGGTTTTGTTTCACCTTCATCTTACATATGATTGT
*
63220974 TGTATGGTTTTGTTTCATCTTCATCTTACATATGATTG
1 TGTATGGTTTTGTTTCACCTTCATCTTACATATGATTG
63221012 CTACTTCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 31 0.89
39 4 0.11
ACGTcount: A:0.17, C:0.14, G:0.16, T:0.53
Consensus pattern (39 bp):
TGTATGGTTTTGTTTCACCTTCATCTTACATATGATTGT
Found at i:63230033 original size:6 final size:6
Alignment explanation
Indices: 63229982--63230119 Score: 75
Period size: 6 Copynumber: 23.5 Consensus size: 6
63229972 CCTTTTTTCC
* * * * * * *
63229982 CTTCCT CTTGTT CTTGTT CTTCTT TTTGTT CTTGTT CTTATT CTTCTT
1 CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT
* * ** * * *
63230030 CTTCTT GTTCTT CTTCCT CCCCTT -TT-TT C-CCTT CCTCTT GTTCTT
1 CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT
* * * * * *
63230075 GTTCTT CTTTTT GTTCTT GTTCTT ATTCTT CTTCTT CTTGTT CTT
1 CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTTCTT CTT
63230120 GTTCCTCTTT
Statistics
Matches: 102, Mismatches: 27, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
4 2 0.02
5 3 0.03
6 97 0.95
ACGTcount: A:0.01, C:0.27, G:0.07, T:0.64
Consensus pattern (6 bp):
CTTCTT
Found at i:63230088 original size:78 final size:78
Alignment explanation
Indices: 63229960--63230126 Score: 309
Period size: 78 Copynumber: 2.2 Consensus size: 78
63229950 TTGAAAAAAA
*
63229960 TTCTTTTTCC-CCCCTTTTTTCCCTTCCTCTTGTTCTTGTTCTTCTTTTTGTTCTTGTTCTTATT
1 TTCTTCTTCCTCCCCTTTTTTCCCTTCCTCTTGTTCTTGTTCTTCTTTTTGTTCTTGTTCTTATT
63230024 CTTCTTCTTCTTG
66 CTTCTTCTTCTTG
63230037 TTCTTCTTCCTCCCCTTTTTTCCCTTCCTCTTGTTCTTGTTCTTCTTTTTGTTCTTGTTCTTATT
1 TTCTTCTTCCTCCCCTTTTTTCCCTTCCTCTTGTTCTTGTTCTTCTTTTTGTTCTTGTTCTTATT
63230102 CTTCTTCTTCTTG
66 CTTCTTCTTCTTG
*
63230115 TTCTTGTTCCTC
1 TTCTTCTTCCTC
63230127 TTTTTCATGT
Statistics
Matches: 87, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
77 9 0.10
78 78 0.90
ACGTcount: A:0.01, C:0.29, G:0.07, T:0.63
Consensus pattern (78 bp):
TTCTTCTTCCTCCCCTTTTTTCCCTTCCTCTTGTTCTTGTTCTTCTTTTTGTTCTTGTTCTTATT
CTTCTTCTTCTTG
Found at i:63230128 original size:15 final size:15
Alignment explanation
Indices: 63229982--63230119 Score: 100
Period size: 15 Copynumber: 9.0 Consensus size: 15
63229972 CCTTTTTTCC
*
63229982 CTTCCTCTTGTTCTT
1 CTTCTTCTTGTTCTT
* * *
63229997 GTTCTTCTTTTTGTT
1 CTTCTTCTTGTTCTT
* *
63230012 CTTGTTCTTATTCTT
1 CTTCTTCTTGTTCTT
63230027 CTTCTTCTTGTTCTT
1 CTTCTTCTTGTTCTT
*
63230042 CTTCCTCCCCTT-TT-TT
1 CTT-CT--TCTTGTTCTT
*
63230058 CCCTTCCTCTTGTTCTT
1 --CTTCTTCTTGTTCTT
* * *
63230075 GTTCTTCTTTTTGTT
1 CTTCTTCTTGTTCTT
* *
63230090 CTTGTTCTTATTCTT
1 CTTCTTCTTGTTCTT
63230105 CTTCTTCTTGTTCTT
1 CTTCTTCTTGTTCTT
63230120 GTTCCTCTTT
Statistics
Matches: 93, Mismatches: 23, Indels: 14
0.72 0.18 0.11
Matches are distributed among these distances:
15 76 0.82
16 6 0.06
17 5 0.05
18 6 0.06
ACGTcount: A:0.01, C:0.27, G:0.07, T:0.64
Consensus pattern (15 bp):
CTTCTTCTTGTTCTT
Found at i:63230128 original size:18 final size:18
Alignment explanation
Indices: 63229982--63230110 Score: 96
Period size: 18 Copynumber: 6.8 Consensus size: 18
63229972 CCTTTTTTCC
*
63229982 CTTCCTCTTGTTCTTGTT
1 CTTCTTCTTGTTCTTGTT
*
63230000 CTTCTTTTTGTTCTTGTT
1 CTTCTTCTTGTTCTTGTT
*
63230018 CTTATTCTTCTTCTTCTTGTT
1 C---TTCTTCTTGTTCTTGTT
* *** *
63230039 CTTCTTCCTCCCCTTTTTT
1 CTTCTTCTTGTTC-TTGTT
*
63230058 CCCTTCCTCTTGTTCTTGTT
1 --CTTCTTCTTGTTCTTGTT
*
63230078 CTTCTTTTTGTTCTTGTT
1 CTTCTTCTTGTTCTTGTT
* *
63230096 CTTATTCTTCTTCTT
1 CTTCTTCTTGTTCTT
63230111 CTTGTTCTTG
Statistics
Matches: 86, Mismatches: 19, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
18 54 0.63
19 4 0.05
20 4 0.05
21 24 0.28
ACGTcount: A:0.02, C:0.27, G:0.07, T:0.64
Consensus pattern (18 bp):
CTTCTTCTTGTTCTTGTT
Found at i:63232663 original size:20 final size:20
Alignment explanation
Indices: 63232638--63232677 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
63232628 AGACATTCAG
*
63232638 TTGTATCTTTTAAGGAGAGT
1 TTGTATCTTTTAAGAAGAGT
63232658 TTGTATCTTTTAAGAAGAGT
1 TTGTATCTTTTAAGAAGAGT
63232678 GATGTTCCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.45
Consensus pattern (20 bp):
TTGTATCTTTTAAGAAGAGT
Found at i:63240324 original size:32 final size:32
Alignment explanation
Indices: 63240288--63240353 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
63240278 AAACAAAACC
63240288 AATATTTCAACAATATTTGAGTAATCAAATTA
1 AATATTTCAACAATATTTGAGTAATCAAATTA
* *
63240320 AATATTTCAACCATATTTGAGTAATTAAATTA
1 AATATTTCAACAATATTTGAGTAATCAAATTA
63240352 AA
1 AA
63240354 AATACCAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (32 bp):
AATATTTCAACAATATTTGAGTAATCAAATTA
Found at i:63240370 original size:34 final size:32
Alignment explanation
Indices: 63240295--63240371 Score: 91
Period size: 32 Copynumber: 2.3 Consensus size: 32
63240285 ACCAATATTT
* **
63240295 CAACAATATTTGAGTAATCAAATTAAATATTT
1 CAACAATATTTGAGTAATCAAATTAAAAATAC
* *
63240327 CAACCATATTTGAGTAATTAAATTAAAAATAC
1 CAACAATATTTGAGTAATCAAATTAAAAATAC
63240359 CAAACTAATATTT
1 C-AAC-AATATTT
63240372 TTTAGAATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
32 28 0.76
33 3 0.08
34 6 0.16
ACGTcount: A:0.48, C:0.12, G:0.05, T:0.35
Consensus pattern (32 bp):
CAACAATATTTGAGTAATCAAATTAAAAATAC
Found at i:63241255 original size:23 final size:21
Alignment explanation
Indices: 63241212--63241268 Score: 53
Period size: 23 Copynumber: 2.6 Consensus size: 21
63241202 GTATTTATTT
*
63241212 TTTTAATTTTATAATATTTTAA
1 TTTTAATTTTTTAATATTTT-A
63241234 TTTTAATTTTTTGAAT-TATTTA
1 TTTTAATTTTTT-AATAT-TTTA
*
63241256 TATATAATTTTTT
1 T-TTTAATTTTTT
63241269 TATCTTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 14 0.47
23 16 0.53
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTAATTTTTTAATATTTTA
Found at i:63244655 original size:55 final size:55
Alignment explanation
Indices: 63244566--63244675 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
63244556 CTGGATCAGC
* *
63244566 AGGATCAGCTCAATCAAGAATCAGAGGCCCTTCTTGTTCCATTTATTTTAAAGAA
1 AGGAACAGCTCAACCAAGAATCAGAGGCCCTTCTTGTTCCATTTATTTTAAAGAA
63244621 AGGAACAGCTCAACCAAGAATCAGAGGCCCTTCTTGTTCCATTTATTTTAAAGAA
1 AGGAACAGCTCAACCAAGAATCAGAGGCCCTTCTTGTTCCATTTATTTTAAAGAA
63244676 CCGGTTATAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (55 bp):
AGGAACAGCTCAACCAAGAATCAGAGGCCCTTCTTGTTCCATTTATTTTAAAGAA
Found at i:63251849 original size:47 final size:47
Alignment explanation
Indices: 63251737--63251926 Score: 175
Period size: 48 Copynumber: 4.0 Consensus size: 47
63251727 GGGTTATTGC
* * * * *
63251737 GATCCTGTATAAAACAATGTCTGGGACATGGCATCAGCATCATTATGA
1 GATCCCGTATAAGACCATATCTGGGACATGGCATCAGCATC-GTATGA
* * * *
63251785 GATCCCGTATCAGACCATGTCAGGGACATGGCATCGGCATCGTATGA
1 GATCCCGTATAAGACCATATCTGGGACATGGCATCAGCATCGTATGA
* * * **
63251832 GATCCCGTATGAGACCATATTTGGGATATAACATCAGCATCG-AGTTGA
1 GATCCCGTATAAGACCATATCTGGGACATGGCATCAGCATCGTA--TGA
* * * **
63251880 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGTATGA
1 GATCCCGTATAAGACCATATCTGGGACATGGCATCAGCATCGTATGA
63251927 TATGTATGAG
Statistics
Matches: 116, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
46 1 0.01
47 42 0.36
48 72 0.62
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (47 bp):
GATCCCGTATAAGACCATATCTGGGACATGGCATCAGCATCGTATGA
Found at i:63255209 original size:31 final size:32
Alignment explanation
Indices: 63255172--63255233 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
63255162 AAAGAAAGAA
*
63255172 ATATAAAGT-AAAAAGAGTATATATAAAAAAT
1 ATATAAAGTAAAAAAGAATATATATAAAAAAT
*
63255203 ATATAAAGTAAAAAAGAATATATATATAAAA
1 ATATAAAGTAAAAAAGAATATATATAAAAAA
63255234 GAGAAATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 9 0.32
32 19 0.68
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (32 bp):
ATATAAAGTAAAAAAGAATATATATAAAAAAT
Found at i:63255223 original size:17 final size:17
Alignment explanation
Indices: 63255166--63255224 Score: 61
Period size: 16 Copynumber: 3.6 Consensus size: 17
63255156 AAGAAGAAAG
63255166 AAAGAAATATAAAGT-AA
1 AAAG-AATATAAAGTAAA
* *
63255183 AAAGAGTATATA-TAAA
1 AAAGAATATAAAGTAAA
*
63255199 AAA-TATATAAAGTAAA
1 AAAGAATATAAAGTAAA
63255215 AAAGAATATA
1 AAAGAATATA
63255225 TATATAAAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
15 6 0.18
16 18 0.55
17 9 0.27
ACGTcount: A:0.68, C:0.00, G:0.10, T:0.22
Consensus pattern (17 bp):
AAAGAATATAAAGTAAA
Found at i:63255233 original size:17 final size:16
Alignment explanation
Indices: 63255181--63255235 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
63255171 AATATAAAGT
*
63255181 AAAAAGAGTATATATA
1 AAAAAGAATATATATA
* *
63255197 AAAAA-TATATAAAGTA
1 AAAAAGAATATATA-TA
63255213 AAAAAGAATATATATA
1 AAAAAGAATATATATA
*
63255229 TAAAAGA
1 AAAAAGA
63255236 GAAATATTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
15 5 0.16
16 20 0.65
17 6 0.19
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (16 bp):
AAAAAGAATATATATA
Found at i:63255241 original size:19 final size:20
Alignment explanation
Indices: 63255199--63255242 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
63255189 TATATATAAA
63255199 AAATATATAAAGTAAAAAAG
1 AAATATATAAAGTAAAAAAG
* *
63255219 -AATATATATA-TAAAAGAG
1 AAATATATAAAGTAAAAAAG
63255237 AAATAT
1 AAATAT
63255243 TACTTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.25
Consensus pattern (20 bp):
AAATATATAAAGTAAAAAAG
Found at i:63255242 original size:17 final size:17
Alignment explanation
Indices: 63255166--63255242 Score: 63
Period size: 17 Copynumber: 4.6 Consensus size: 17
63255156 AAGAAGAAAG
63255166 AAAGAAATATAAAGTAA
1 AAAGAAATATAAAGTAA
* *
63255183 AAAG-AGTATATA-TAA
1 AAAGAAATATAAAGTAA
*
63255198 AAA-ATATATAAAGTAAA
1 AAAGAAATATAAAGT-AA
*
63255215 AAAGAATATATATA-TAA
1 AAAGAA-ATATAAAGTAA
63255232 AAGAGAAATAT
1 AA-AGAAATAT
63255243 TACTTTTTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
15 11 0.23
16 7 0.15
17 17 0.36
18 6 0.13
19 6 0.13
ACGTcount: A:0.66, C:0.00, G:0.10, T:0.23
Consensus pattern (17 bp):
AAAGAAATATAAAGTAA
Found at i:63262995 original size:42 final size:42
Alignment explanation
Indices: 63262895--63263147 Score: 337
Period size: 42 Copynumber: 6.0 Consensus size: 42
63262885 AACGGGTACA
* * * *
63262895 ATGCTGATGTCCCAGACGTGGTCTTACATGTAATTCAG-TATCG
1 ATGCCGATGTCCCAGACATGGTCTTACACG-AAATCAGATA-CG
** *
63262938 ATGCCTCTGTCCCAGACAGGGTCTTACACGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* *
63262980 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAAATATG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* *
63263022 ATACCGATGTCCCAGACATGGTCTTACACGAAATTAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
* * * *
63263064 ATTCCGATGTCTCAGATATGGTCTTACATGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
*
63263106 ATGCCGATGTCCCAGACATAGTCTTACACGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
63263148 CGAAATCAGA
Statistics
Matches: 183, Mismatches: 26, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
42 157 0.86
43 26 0.14
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACG
Found at i:63263153 original size:14 final size:14
Alignment explanation
Indices: 63263134--63263161 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
63263124 TAGTCTTACA
63263134 CGAAATCAGATACG
1 CGAAATCAGATACG
63263148 CGAAATCAGATACG
1 CGAAATCAGATACG
63263162 ATGTCGATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.14
Consensus pattern (14 bp):
CGAAATCAGATACG
Found at i:63263179 original size:56 final size:55
Alignment explanation
Indices: 63263093--63263202 Score: 184
Period size: 56 Copynumber: 2.0 Consensus size: 55
63263083 GGTCTTACAT
63263093 GAAATCAGATACGATGCCGATGTCCCAGACATAGTCTTACACGAAATCAGATACGC
1 GAAATCAGATACGATGCCGATGTCCCAGACATAGTCTTACA-GAAATCAGATACGC
* * *
63263149 GAAATCAGATACGATGTCGATGTCCCAGACATGGTCTTACATAAATCAGATACG
1 GAAATCAGATACGATGCCGATGTCCCAGACATAGTCTTACAGAAATCAGATACG
63263203 ATGCTGATGT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
55 12 0.24
56 39 0.76
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (55 bp):
GAAATCAGATACGATGCCGATGTCCCAGACATAGTCTTACAGAAATCAGATACGC
Found at i:63263227 original size:97 final size:98
Alignment explanation
Indices: 63263050--63263244 Score: 304
Period size: 97 Copynumber: 2.0 Consensus size: 98
63263040 TGGTCTTACA
* * *
63263050 CGAAATTAGATACGATTCCGATGTCTCAGATATGGTCTTACATGAAATCAGATACGATGCCGATG
1 CGAAATCAGATACGATTCCGATGTCCCAGACATGGTCTTACATGAAATCAGATACGATGCCGATG
*
63263115 TCCCAGACATAGTCTTACACGAAATCAGATACG
66 TCCCAGACATAGTCTTACACGAAATCAAATACG
*
63263148 CGAAATCAGATACGATGT-CGATGTCCCAGACATGGTCTTACAT-AAATCAGATACGATGCTGAT
1 CGAAATCAGATACGAT-TCCGATGTCCCAGACATGGTCTTACATGAAATCAGATACGATGCCGAT
* *
63263211 GTCCCAGACATGGTCTTACATGAAATCAAATACG
65 GTCCCAGACATAGTCTTACACGAAATCAAATACG
63263245 ATACCAATGT
Statistics
Matches: 89, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
97 50 0.56
98 38 0.43
99 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (98 bp):
CGAAATCAGATACGATTCCGATGTCCCAGACATGGTCTTACATGAAATCAGATACGATGCCGATG
TCCCAGACATAGTCTTACACGAAATCAAATACG
Found at i:63263255 original size:42 final size:42
Alignment explanation
Indices: 63263149--63263272 Score: 196
Period size: 41 Copynumber: 3.0 Consensus size: 42
63263139 TCAGATACGC
*
63263149 GAAATCAGATACGATGTCGATGTCCCAGACATGGTCTTACAT
1 GAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTACAT
*
63263191 -AAATCAGATACGATGCTGATGTCCCAGACATGGTCTTACAT
1 GAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTACAT
* * *
63263232 GAAATCAAATACGATACCAATGTCCCAGACATGGTCTTACA
1 GAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTACA
63263273 CGTAAATATC
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
41 39 0.52
42 36 0.48
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.25
Consensus pattern (42 bp):
GAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTACAT
Found at i:63263259 original size:139 final size:141
Alignment explanation
Indices: 63263008--63263279 Score: 404
Period size: 139 Copynumber: 1.9 Consensus size: 141
63262998 TGGTCTTACA
* * *
63263008 CGAAATCAAATATGATACCGATGTCCCAGACATGGTCTTACACGAAATTAGATACGATTCCGATG
1 CGAAATCAAATACGATACCGATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATG
* * * * *
63263073 TCTCAGATATGGTCTTACATGAAATCAGATACGATGCCGATGTCCCAGACATAGTCTTACACG-A
66 TCCCAGACATGGTCTTACATGAAATCAAATACGATACCAATGTCCCAGACATAGTCTTACACGTA
63263137 AATCAGATACG
131 AATCAGATACG
* ** * *
63263148 CGAAATCAGATACGATGTCGATGTCCCAGACATGGTCTTACA-TAAATCAGATACGATGCTGATG
1 CGAAATCAAATACGATACCGATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATG
*
63263212 TCCCAGACATGGTCTTACATGAAATCAAATACGATACCAATGTCCCAGACATGGTCTTACACGTA
66 TCCCAGACATGGTCTTACATGAAATCAAATACGATACCAATGTCCCAGACATAGTCTTACACGTA
63263277 AAT
131 AAT
63263280 ATCTAATCGA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
139 75 0.64
140 42 0.36
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.25
Consensus pattern (141 bp):
CGAAATCAAATACGATACCGATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATG
TCCCAGACATGGTCTTACATGAAATCAAATACGATACCAATGTCCCAGACATAGTCTTACACGTA
AATCAGATACG
Found at i:63269843 original size:43 final size:42
Alignment explanation
Indices: 63269795--63269951 Score: 151
Period size: 42 Copynumber: 3.6 Consensus size: 42
63269785 GTCCTGGACG
* *
63269795 TGGTCTTACATGTAATTCAGTATCGATGCCTCTGTCCCAGACA
1 TGGTCTTACACGTAATTCAG-ATCGATGCCTATGTCCCAGACA
* *
63269838 TGGTCTTACACG-AAATCAGATACGATG-CTGATGTTCCAGACA
1 TGGTCTTACACGTAATTCAGAT-CGATGCCT-ATGTCCCAGACA
* *
63269880 TGGTCTTACACGTAAATATCAAATCGA-GCCCTATATCCCAGACA
1 TGGTCTTACACGT-AAT-TCAGATCGATG-CCTATGTCCCAGACA
*
63269924 CGGTCTTACACG-ATATCTCAGATCGATG
1 TGGTCTTACACGTA-AT-TCAGATCGATG
63269952 TTAATGTTCC
Statistics
Matches: 94, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
41 4 0.04
42 34 0.36
43 22 0.23
44 27 0.29
45 7 0.07
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (42 bp):
TGGTCTTACACGTAATTCAGATCGATGCCTATGTCCCAGACA
Found at i:63287312 original size:43 final size:43
Alignment explanation
Indices: 63287265--63287359 Score: 156
Period size: 43 Copynumber: 2.2 Consensus size: 43
63287255 ATTGGCAGTT
*
63287265 AGTGTGCGATACAATTATAGCTT-TGGCTAATTAATTAGCTCTA
1 AGTGTGCGATACAATTATAGCTTCT-GCTAATTAATTAGCACTA
*
63287308 AGTGTGCGATACAATTATAGCTTCTGTTAATTAATTAGCACTA
1 AGTGTGCGATACAATTATAGCTTCTGCTAATTAATTAGCACTA
63287351 AGTGTGCGA
1 AGTGTGCGA
63287360 GTTTATTGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 48 0.98
44 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.36
Consensus pattern (43 bp):
AGTGTGCGATACAATTATAGCTTCTGCTAATTAATTAGCACTA
Found at i:63288117 original size:26 final size:26
Alignment explanation
Indices: 63288077--63288213 Score: 229
Period size: 26 Copynumber: 5.3 Consensus size: 26
63288067 TTGATACAAA
* *
63288077 ATGATGATGGGTTAGGTAAATGTTCC
1 ATGATAATGGGTTAGGTAAATGTTTC
* * *
63288103 ATGATAATGGATTAGGTAAATATTCC
1 ATGATAATGGGTTAGGTAAATGTTTC
63288129 ATGATAATGGGTTAGGTAAATGTTTC
1 ATGATAATGGGTTAGGTAAATGTTTC
63288155 ATGATAATGGGTTAGGTAAATGTTTC
1 ATGATAATGGGTTAGGTAAATGTTTC
63288181 ATGATAATGGGTTAGGTAAATGTTTC
1 ATGATAATGGGTTAGGTAAATGTTTC
63288207 ATGATAA
1 ATGATAA
63288214 ATTAAATGNN
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 105 1.00
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (26 bp):
ATGATAATGGGTTAGGTAAATGTTTC
Found at i:63291887 original size:16 final size:16
Alignment explanation
Indices: 63291866--63291897 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63291856 AATGGGTTTG
*
63291866 CAAAAACAAAGATTTT
1 CAAAAACAAAAATTTT
63291882 CAAAAACAAAAATTTT
1 CAAAAACAAAAATTTT
63291898 ATAAAGAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.12, G:0.03, T:0.25
Consensus pattern (16 bp):
CAAAAACAAAAATTTT
Found at i:63303591 original size:31 final size:31
Alignment explanation
Indices: 63303553--63303805 Score: 256
Period size: 31 Copynumber: 8.1 Consensus size: 31
63303543 TAGCATCCCC
* *
63303553 AGAGATAGCCCGTTGGGACAGTAAACATAGA
1 AGAGATAGTCCGCTGGGACAGTAAACATAGA
** * * *
63303584 AGAGATAGTCTACTGGGACAGTAAATACATA
1 AGAGATAGTCCGCTGGGACAGTAAACATAGA
* * * *
63303615 AGAGATAATCCGCTAGGATAGTAAACACAGA
1 AGAGATAGTCCGCTGGGACAGTAAACATAGA
* * *
63303646 AGAGATAGTCCACTGGGACGGTAAACACT-TA
1 AGAGATAGTCCGCTGGGACAGTAAACA-TAGA
* *
63303677 AGAGATAATCCGCTGGGATAGTAAACATAGA
1 AGAGATAGTCCGCTGGGACAGTAAACATAGA
* *
63303708 AGAGATAGTCCACTGGGACAGTAAAGATAGA
1 AGAGATAGTCCGCTGGGACAGTAAACATAGA
* * * *
63303739 ACAGATAGTCTGTTGGGATAGTAAACATAGA
1 AGAGATAGTCCGCTGGGACAGTAAACATAGA
* * *
63303770 AGAGATAGCCCGTTGGGACCGTAAACATAGA
1 AGAGATAGTCCGCTGGGACAGTAAACATAGA
63303801 TAGAG
1 -AGAG
63303806 TCCATCGGGA
Statistics
Matches: 178, Mismatches: 41, Indels: 5
0.79 0.18 0.02
Matches are distributed among these distances:
30 1 0.01
31 173 0.97
32 4 0.02
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (31 bp):
AGAGATAGTCCGCTGGGACAGTAAACATAGA
Found at i:63303650 original size:62 final size:62
Alignment explanation
Indices: 63303566--63303796 Score: 300
Period size: 62 Copynumber: 3.7 Consensus size: 62
63303556 GATAGCCCGT
* * *
63303566 TGGGACAGTAAACATAGAAGAGATAGTCTACTGGGACAGTAAATACATAAGAGATAATCCGC
1 TGGGATAGTAAACATAGAAGAGATAGTCCACTGGGACAGTAAACACATAAGAGATAATCCGC
* * * *
63303628 TAGGATAGTAAACACAGAAGAGATAGTCCACTGGGACGGTAAACACTTAAGAGATAATCCGC
1 TGGGATAGTAAACATAGAAGAGATAGTCCACTGGGACAGTAAACACATAAGAGATAATCCGC
* * * * * * *
63303690 TGGGATAGTAAACATAGAAGAGATAGTCCACTGGGACAGTAAAGATAGAACAGATAGTCTGT
1 TGGGATAGTAAACATAGAAGAGATAGTCCACTGGGACAGTAAACACATAAGAGATAATCCGC
* ** *
63303752 TGGGATAGTAAACATAGAAGAGATAGCCCGTTGGGACCGTAAACA
1 TGGGATAGTAAACATAGAAGAGATAGTCCACTGGGACAGTAAACA
63303797 TAGATAGAGT
Statistics
Matches: 146, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 146 1.00
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (62 bp):
TGGGATAGTAAACATAGAAGAGATAGTCCACTGGGACAGTAAACACATAAGAGATAATCCGC
Found at i:63306686 original size:41 final size:41
Alignment explanation
Indices: 63306591--63306676 Score: 118
Period size: 41 Copynumber: 2.1 Consensus size: 41
63306581 GTATCAATTA
*
63306591 CCTAATTCAATACACTGGCGCGAAGCATACTAGGCCCAAAG
1 CCTAATTCAATACACTGGCGCGAAGCATACTAGGCACAAAG
* * * * *
63306632 CCTAATTCAATACATTGGCTCGAAGCTTGCTAGGCATAAAG
1 CCTAATTCAATACACTGGCGCGAAGCATACTAGGCACAAAG
63306673 CCTA
1 CCTA
63306677 GCTTAATACA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.22
Consensus pattern (41 bp):
CCTAATTCAATACACTGGCGCGAAGCATACTAGGCACAAAG
Found at i:63308309 original size:22 final size:23
Alignment explanation
Indices: 63308237--63308324 Score: 90
Period size: 23 Copynumber: 3.9 Consensus size: 23
63308227 GGACTCACCA
* * *
63308237 CAGCTCATTGGAGCTTACCATTT
1 CAGCTCAATAGAGCTTACCGTTT
* *
63308260 CAGCTCATTTGAGCTTACCGTTT
1 CAGCTCAATAGAGCTTACCGTTT
* *
63308283 CAGCTCAATAGATCTTACTG-TT
1 CAGCTCAATAGAGCTTACCGTTT
63308305 CAGCTCGAA-AGAGCTTACCG
1 CAGCTC-AATAGAGCTTACCG
63308325 ACCATGACTC
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
22 17 0.30
23 39 0.70
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (23 bp):
CAGCTCAATAGAGCTTACCGTTT
Found at i:63309255 original size:43 final size:43
Alignment explanation
Indices: 63309207--63309296 Score: 135
Period size: 43 Copynumber: 2.1 Consensus size: 43
63309197 CACTGGCGTG
*
63309207 TGTCTCAGCTATGGGTGACACACAGTCATGTTACACGGCCGTA
1 TGTCTCAGCCATGGGTGACACACAGTCATGTTACACGGCCGTA
* * * *
63309250 TGTCTCAGCCGTGTGTGACACACGGTCATGTTACACGGCCGTG
1 TGTCTCAGCCATGGGTGACACACAGTCATGTTACACGGCCGTA
63309293 TGTC
1 TGTC
63309297 CCTTGGGGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.27
Consensus pattern (43 bp):
TGTCTCAGCCATGGGTGACACACAGTCATGTTACACGGCCGTA
Found at i:63311163 original size:40 final size:40
Alignment explanation
Indices: 63311089--63311233 Score: 204
Period size: 40 Copynumber: 3.6 Consensus size: 40
63311079 AACCCAAGTA
* *
63311089 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
63311128 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
*
63311168 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
63311211 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
63311234 CATCCGAATA
Statistics
Matches: 94, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
39 13 0.14
40 49 0.52
41 1 0.01
43 31 0.33
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:63317582 original size:53 final size:55
Alignment explanation
Indices: 63317514--63317720 Score: 195
Period size: 53 Copynumber: 3.8 Consensus size: 55
63317504 TTCCTTTTTA
* *
63317514 AACTTACCATTGCCATGTATTGACATGGTCTTACGTGATATCCTTGCCTTAT-G-
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAGT
* * * ** *
63317567 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAGT
** * * * * * *
63317622 AGTTTATCAATGCAATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTA-A
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAGT
* * * * * *
63317676 AAATTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGATATCCTT
63317721 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 44 0.36
54 37 0.31
55 40 0.33
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (55 bp):
AACTTACCATTGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATAGT
Found at i:63319426 original size:27 final size:27
Alignment explanation
Indices: 63319396--63319502 Score: 76
Period size: 27 Copynumber: 4.0 Consensus size: 27
63319386 ATCTCATATC
**
63319396 TGTAGGCTA-ACATTACTGAAATACCCT
1 TGTAGGCTAGA-ATTACCAAAATACCCT
*
63319423 TGTAGGGTAGAATTACCAAAATACCCT
1 TGTAGGCTAGAATTACCAAAATACCCT
** *
63319450 TGGTTTG-TAAAATTACCAAAATACCCCT
1 T-GTAGGCTAGAATTACCAAAATA-CCCT
* ** *
63319478 GGTTTG-TAAAATTACCAAAATACCC
1 TGTAGGCTAGAATTACCAAAATACCC
63319503 CTAGTTTGTA
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
26 3 0.04
27 59 0.84
28 8 0.11
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (27 bp):
TGTAGGCTAGAATTACCAAAATACCCT
Found at i:63319503 original size:27 final size:27
Alignment explanation
Indices: 63319433--63319627 Score: 182
Period size: 27 Copynumber: 7.2 Consensus size: 27
63319423 TGTAGGGTAG
* *
63319433 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
*
63319460 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
63319487 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* * *
63319514 AATTACCAAGATACCTCTGATTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
** *
63319541 AATTACTGAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
** * *
63319568 AATTACTGAAATA-CCCTCAACTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
* * *
63319595 AATTACCAAAGTA-CCCTCGATTTATAG
1 AATTACCAAAATACCCCT-GATTTGTAA
63319622 AATTAC
1 AATTAC
63319628 TATTTTACCC
Statistics
Matches: 146, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 3 0.02
27 142 0.97
28 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:63319544 original size:81 final size:81
Alignment explanation
Indices: 63319433--63319627 Score: 207
Period size: 81 Copynumber: 2.4 Consensus size: 81
63319423 TGTAGGGTAG
* **
63319433 AATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCC-CTGGTTTGTAAAATTACCAAA
1 AATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTC-GACTTGTAAAATTACCAAA
**
63319497 ATACCC-CTAGTTTGTAA
65 ATACCCTC-AACTTGTAA
* * ** **
63319514 AATTACCAAGATA-CCTCTGATTTGTGAAATTACTGAAATACCCTCGACTTGTAAAATTACTGAA
1 AATTACCAAAATACCCT-TGATTTGTAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAA
63319578 ATACCCTCAACTTGTAA
65 ATACCCTCAACTTGTAA
* * * *
63319595 AATTACCAAAGTACCCTCGATTTATAGAATTAC
1 AATTACCAAAATACCCTTGATTTGTAAAATTAC
63319628 TATTTTACCC
Statistics
Matches: 93, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
80 3 0.03
81 85 0.91
82 5 0.05
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAA
TACCCTCAACTTGTAA
Found at i:63319636 original size:27 final size:27
Alignment explanation
Indices: 63319606--63320042 Score: 533
Period size: 27 Copynumber: 16.2 Consensus size: 27
63319596 ATTACCAAAG
* *
63319606 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
63319633 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
63319660 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
63319687 TACCCTCAATTTACAATATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
63319714 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
63319741 TACCCTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-ATTT
*
63319768 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
63319795 TACCCTCAATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
63319822 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
63319849 TACCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
63319876 TACCCTCAATTTACAAAATTA-TCATTT
1 TACCCTCGATTTACAAAATTACT-ATTT
63319903 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
63319930 TATCCTCGATTTACAGAATTAC-AGTTT
1 TACCCTCGATTTACAAAATTACTA-TTT
** * *
63319957 TACCCTTAATTTA-AAGAATTAATGTTT
1 TACCCTCGATTTACAA-AATTACTATTT
* * *
63319984 TACCCTTGATTTATAGAATTACCT-TTT
1 TACCCTCGATTTACAAAATTA-CTATTT
* *
63320011 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
63320038 TACCC
1 TACCC
63320043 CTAGGGTGTT
Statistics
Matches: 356, Mismatches: 44, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.01
27 347 0.97
28 4 0.01
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:63320570 original size:6 final size:6
Alignment explanation
Indices: 63320535--63320643 Score: 62
Period size: 6 Copynumber: 17.7 Consensus size: 6
63320525 ATTCACATTT
* * * * *
63320535 TGATTT TGATTC TGTTATC TGATAC TGATTC TGATTC TAATTC TG-TCACC
1 TGATTC TGATTC TGAT-TC TGATTC TGATTC TGATTC TGATTC TGAT--TC
* * * *
63320585 TAATTC TGATTC TG-TCACC TGATTC TGATTC TGATTC TCATTT TGATTC
1 TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC TGATTC
63320634 T-AGTTC TGAT
1 TGA-TTC TGAT
63320644 AATGTTTCTT
Statistics
Matches: 77, Mismatches: 17, Indels: 18
0.69 0.15 0.16
Matches are distributed among these distances:
5 3 0.04
6 61 0.79
7 11 0.14
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
TGATTC
Found at i:63320596 original size:19 final size:19
Alignment explanation
Indices: 63320568--63320617 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
63320558 ACTGATTCTG
*
63320568 ATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGTCACCTA
*
63320587 ATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGTCACCTA
63320606 ATTCTGATTCTG
1 ATTCTGATTCTG
63320618 ATTCTCATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.20, C:0.24, G:0.12, T:0.44
Consensus pattern (19 bp):
ATTCTGATTCTGTCACCTA
Found at i:63320615 original size:25 final size:25
Alignment explanation
Indices: 63320559--63320622 Score: 77
Period size: 19 Copynumber: 2.8 Consensus size: 25
63320549 TTATCTGATA
*
63320559 CTGATTCTGATTCTAATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
63320584 CT-A-----ATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
63320603 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
63320623 CATTTTGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 12
0.71 0.02 0.27
Matches are distributed among these distances:
19 17 0.53
20 1 0.03
24 1 0.03
25 13 0.41
ACGTcount: A:0.19, C:0.23, G:0.12, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:63325405 original size:13 final size:13
Alignment explanation
Indices: 63325389--63325416 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
63325379 TTAGTTAAAT
63325389 ATGCATGTTACTG
1 ATGCATGTTACTG
63325402 ATGCATGTTACTG
1 ATGCATGTTACTG
63325415 AT
1 AT
63325417 CATATTAGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.39
Consensus pattern (13 bp):
ATGCATGTTACTG
Found at i:63329176 original size:42 final size:40
Alignment explanation
Indices: 63329130--63329301 Score: 119
Period size: 43 Copynumber: 4.0 Consensus size: 40
63329120 GCTAGGCCAT
*
63329130 TGGCATCGGTATGTGTATTCGTGTAAGACCATATCTGGGATA
1 TGGCATC-GTATGAG-ATTCGTGTAAGACCATATCTGGGATA
** * * * *
63329172 TGGCATCAAAATGAGATTTAGGTGTAAGACCATGTCTAGGACA
1 TGGCATC-GTATGAGA-TT-CGTGTAAGACCATATCTGGGATA
* * *
63329215 TCGACATCGTATGAGAATTCGTGTAAGACCATAGCTGGGCTA
1 T-GGCATCGTATGAG-ATTCGTGTAAGACCATATCTGGGATA
* * * * *
63329257 TTGGCATTGAAATGAGATCCTATGTAAGACCATATCTAGGATA
1 -TGGCATCG-TATGAGATTC-GTGTAAGACCATATCTGGGATA
63329300 TG
1 TG
63329302 ACATTGGCGT
Statistics
Matches: 98, Mismatches: 25, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
41 1 0.01
42 40 0.41
43 51 0.52
44 6 0.06
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (40 bp):
TGGCATCGTATGAGATTCGTGTAAGACCATATCTGGGATA
Found at i:63329197 original size:43 final size:41
Alignment explanation
Indices: 63329150--63329301 Score: 126
Period size: 43 Copynumber: 3.6 Consensus size: 41
63329140 ATGTGTATTC
*
63329150 GTGTAAGACCATATCTGGGATATGGCATCAAAATGAGATTTA
1 GTGTAAGACCATATCTAGGATATGGCATC-AAATGAGATTTA
* * * ** * *
63329192 GGTGTAAGACCATGTCTAGGACATCGACATCGTATGAGAATTC
1 -GTGTAAGACCATATCTAGGATAT-GGCATCAAATGAGATTTA
* * * * *
63329235 GTGTAAGACCATAGCTGGGCTATTGGCATTGAAATGAGATCCTA
1 GTGTAAGACCATATCTAGGATA-TGGCA-TCAAATGAGAT-TTA
63329279 -TGTAAGACCATATCTAGGATATG
1 GTGTAAGACCATATCTAGGATATG
63329302 ACATTGGCGT
Statistics
Matches: 82, Mismatches: 23, Indels: 9
0.72 0.20 0.08
Matches are distributed among these distances:
42 22 0.27
43 54 0.66
44 6 0.07
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (41 bp):
GTGTAAGACCATATCTAGGATATGGCATCAAATGAGATTTA
Found at i:63329253 original size:85 final size:85
Alignment explanation
Indices: 63329098--63329305 Score: 228
Period size: 85 Copynumber: 2.4 Consensus size: 85
63329088 CAACATCGAT
* * * * *
63329098 ATGAGACTCCTA--TAAGACCATGGCTAGGCCATTGGCATCGGTATGTGTATTCGTGTAAGACCA
1 ATGAGA-TCCTATGTAAGACCATGTCTAGGACA-TGACATCGGTATGAGAATTCGTGTAAGACCA
*
63329161 TATCTGGGATA-TGGCATCAAA
64 TAGCTGGGATATTGGCATCAAA
*
63329182 ATGAGAT-TTAGGTGTAAGACCATGTCTAGGACATCGACATC-GTATGAGAATTCGTGTAAGACC
1 ATGAGATCCTA--TGTAAGACCATGTCTAGGACAT-GACATCGGTATGAGAATTCGTGTAAGACC
* **
63329245 ATAGCTGGGCTATTGGCATTGAA
63 ATAGCTGGGATATTGGCATCAAA
* *
63329268 ATGAGATCCTATGTAAGACCATATCTAGGATATGACAT
1 ATGAGATCCTATGTAAGACCATGTCTAGGACATGACAT
63329306 TGGCGTCGCA
Statistics
Matches: 104, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
82 2 0.02
83 1 0.01
84 11 0.11
85 51 0.49
86 37 0.36
87 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (85 bp):
ATGAGATCCTATGTAAGACCATGTCTAGGACATGACATCGGTATGAGAATTCGTGTAAGACCATA
GCTGGGATATTGGCATCAAA
Found at i:63351133 original size:43 final size:43
Alignment explanation
Indices: 63351061--63351146 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
63351051 GTTACATGAA
* * *
63351061 TCGCATACATGATGAACTTGGACCACTCAACGAGCTCAGATGC
1 TCGCATACATAATGAACTCGAACCACTCAACGAGCTCAGATGC
* * * *
63351104 TCGCATCCATAATGAACTCGAACCTCTCAATGAGCTCGGATGC
1 TCGCATACATAATGAACTCGAACCACTCAACGAGCTCAGATGC
63351147 CACATAAATC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (43 bp):
TCGCATACATAATGAACTCGAACCACTCAACGAGCTCAGATGC
Found at i:63357951 original size:17 final size:17
Alignment explanation
Indices: 63357929--63357963 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
63357919 TATATGGGAC
63357929 TACAGTCATGTTCGATA
1 TACAGTCATGTTCGATA
*
63357946 TACAGTCATGTTTGATA
1 TACAGTCATGTTCGATA
63357963 T
1 T
63357964 CACATCGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (17 bp):
TACAGTCATGTTCGATA
Found at i:63358026 original size:40 final size:40
Alignment explanation
Indices: 63357971--63358125 Score: 195
Period size: 40 Copynumber: 3.9 Consensus size: 40
63357961 TATCACATCG
*
63357971 GCTATATGTGGCACTTAGTGTGCTATATGAGATAGCTTCA
1 GCTATATGTGGCACTTAGTGTGCGATATGAGATAGCTTCA
* *
63358011 GCTATATGTGGCACTTAGTGTGCGAGATGAGAGAGCTTC-
1 GCTATATGTGGCACTTAGTGTGCGATATGAGATAGCTTCA
* * * *
63358050 GACTATATGTGGCACTTAATGTGCGATTTTATATAGCTTCA
1 G-CTATATGTGGCACTTAGTGTGCGATATGAGATAGCTTCA
* ** *
63358091 GGTATATAAGGCACTTAGTGTGCGATTTGAGATAG
1 GCTATATGTGGCACTTAGTGTGCGATATGAGATAG
63358126 TTTTGGCTAT
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 96 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.34
Consensus pattern (40 bp):
GCTATATGTGGCACTTAGTGTGCGATATGAGATAGCTTCA
Found at i:63360567 original size:94 final size:94
Alignment explanation
Indices: 63360402--63360605 Score: 279
Period size: 94 Copynumber: 2.2 Consensus size: 94
63360392 CCACAGATCC
* * * *
63360402 TATACCCCTGAAATTGCAGTGGGTCAGGTTGAAGTCACCATAGCGAATCTTATCTCCTTGAAGTT
1 TATACCTCTGAAGTTGCAATGGGTCAGATTGAAGTCACCATAGCGAATCTTATCTCCTTGAAGTT
* *
63360467 GTAGTGGAG-TAGATTGAAGCTACAAATCA
66 GCAGTGGAGCAAGA-TGAAGCTACAAATCA
* *
63360496 TATACCTCTGAAGTTGCAATTGGTCAGATTGAA-TTAGCCATAGCGAATCTTATCTCCTTGAAGT
1 TATACCTCTGAAGTTGCAATGGGTCAGATTGAAGTCA-CCATAGCGAATCTTATCTCCTTGAAGT
*
63360560 TGCAGTGGAGCAAGATGAAGCTACAAATCC
65 TGCAGTGGAGCAAGATGAAGCTACAAATCA
63360590 TATATCCT-TGAAGTTG
1 TATA-CCTCTGAAGTTG
63360606 TAGTGGATCG
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
93 2 0.02
94 90 0.92
95 6 0.06
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (94 bp):
TATACCTCTGAAGTTGCAATGGGTCAGATTGAAGTCACCATAGCGAATCTTATCTCCTTGAAGTT
GCAGTGGAGCAAGATGAAGCTACAAATCA
Found at i:63360624 original size:44 final size:44
Alignment explanation
Indices: 63360541--63360655 Score: 108
Period size: 44 Copynumber: 2.6 Consensus size: 44
63360531 AGCCATAGCG
* * *
63360541 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAAGATGAAGCTACA
1 AATCCTATATCCTTGAAGTTGCAGTGGAGCAAGATGAAGCAACA
* * *
63360585 AATCCTATATCCTTGAAGTTGTAGTGGATCGA-ATAGAAGCAACA
1 AATCCTATATCCTTGAAGTTGCAGTGGAGCAAGAT-GAAGCAACA
* * * *
63360629 ATTTCTATA-CTTCTAAAGTTGCAGTGG
1 AATCCTATATCCT-TGAAGTTGCAGTGG
63360656 GTTGGAATGA
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
43 4 0.07
44 54 0.93
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (44 bp):
AATCCTATATCCTTGAAGTTGCAGTGGAGCAAGATGAAGCAACA
Found at i:63360778 original size:44 final size:44
Alignment explanation
Indices: 63360686--63360816 Score: 131
Period size: 44 Copynumber: 3.0 Consensus size: 44
63360676 GCGAATGATG
* * * * * * *
63360686 AAGCTATGAGTCCTATATCTCTGAAGTTGCAGTAGAGCAGGA-TG
1 AAGCTACGAATCCTATATCCCTAAAGTTGCAGTGGATCA-GATTA
*
63360730 AAGCTACGAATCCTATATCCCTAAAGTTGCAATGGATCAGATTA
1 AAGCTACGAATCCTATATCCCTAAAGTTGCAGTGGATCAGATTA
* * *
63360774 AAGCTAC-AATTCCTATACCCCTAAAGTTGTAGTGGGTCAGATT
1 AAGCTACGAA-TCCTATATCCCTAAAGTTGCAGTGGATCAGATT
63360817 GAATCTACAA
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
43 4 0.05
44 69 0.95
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (44 bp):
AAGCTACGAATCCTATATCCCTAAAGTTGCAGTGGATCAGATTA
Done.