Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 185 of 290
Found at i:63360825 original size:44 final size:44
Alignment explanation
Indices: 63360730--63360827 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 44
63360720 GAGCAGGATG
*
63360730 AAGCTACGAA-TCCTATATCCCTAAAGTTGCAATGGATCAGATTA
1 AAGCTAC-AATTCCTATACCCCTAAAGTTGCAATGGATCAGATTA
* * * *
63360774 AAGCTACAATTCCTATACCCCTAAAGTTGTAGTGGGTCAGATTG
1 AAGCTACAATTCCTATACCCCTAAAGTTGCAATGGATCAGATTA
*
63360818 AATCTACAAT
1 AAGCTACAAT
63360828 GGTGAATCTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 2 0.04
44 45 0.96
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (44 bp):
AAGCTACAATTCCTATACCCCTAAAGTTGCAATGGATCAGATTA
Found at i:63360865 original size:94 final size:94
Alignment explanation
Indices: 63360738--63360956 Score: 222
Period size: 94 Copynumber: 2.3 Consensus size: 94
63360728 TGAAGCTACG
* * * * * * *
63360738 AATCCTATATCCCTAAAGTTGCAATGGATCAGATTAAAGCTACAATTCCTATACCCCTAAAGTTG
1 AATCTTATCTCCCTAAAGCTACAGTGGAGCAGATTAAAGCTACAATTCCTATACCCCTAAAGTTA
* * * * **
63360803 TAGTGGGTCAGATTGAATCTACAATGGTG
66 AAATGGGTCAGAATGAAACTACAATGGCA
* * * * * * *
63360832 AATCTTATCTCCCTAAAGCTATAGTGGAGCAGATTGAAGCTACAATTCTTTTATCTCTAAATTTA
1 AATCTTATCTCCCTAAAGCTACAGTGGAGCAGATTAAAGCTACAATTCCTATACCCCTAAAGTTA
*
63360897 AAATGGGTCAGAATGAAACTACTATGGCA
66 AAATGGGTCAGAATGAAACTACAATGGCA
* * *
63360926 AATCTTATCTCTCTGAAGTTACAGTGGAGCA
1 AATCTTATCTCCCTAAAGCTACAGTGGAGCA
63360957 AGATGAATCT
Statistics
Matches: 100, Mismatches: 25, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
94 100 1.00
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (94 bp):
AATCTTATCTCCCTAAAGCTACAGTGGAGCAGATTAAAGCTACAATTCCTATACCCCTAAAGTTA
AAATGGGTCAGAATGAAACTACAATGGCA
Found at i:63361104 original size:228 final size:229
Alignment explanation
Indices: 63360703--63361240 Score: 588
Period size: 228 Copynumber: 2.3 Consensus size: 229
63360693 GAGTCCTATA
* * * *
63360703 TCTCTGAAGTTGCAGTAGAGCAGGATGAAGCTACG-AATCCTATATCCCTAAAGTTGCAATGGAT
1 TCTCTGAAGTTGCAGTGGAGCAAGATGAAGCTA-GAAATCCTATATCCCTGAAGTTGCAGTGGAT
* * * * *
63360767 C-AGATTAAAGCTACAATTCCTATACCCCTAAAGTTGTAGTGGGTCAGATTGAATCTACAATGGT
65 CGA-ATTGAAGCTACAAATCCTATACCCCT--A-TGGCAGTGGGTCAGATTGAATCTACAATAGT
* * * * * * * *
63360831 GAATCTTATCTCCCTAAAGCTATAGTGGAGCAGATTGAAGCTACAATTCTTTTA-TCTCTAAATT
126 GAATCTTATCTCCCTAAAGCTACAATAGAGAAGATTGAAGCTACAATTCCTATACCCT-TAAAGT
*
63360895 TAAAATGGGTCAGAATGAAACTACTATGGCAAATCTTATC
190 TAAAATGGGTCAGAATGAAACTACAATGGCAAATCTTATC
* * * * *
63360935 TCTCTGAAGTTACAGTGGAGCAAGATGAATCTAGAAATCATACATCCCTGAAGTTGTAGTGGATC
1 TCTCTGAAGTTGCAGTGGAGCAAGATGAAGCTAGAAATCCTATATCCCTGAAGTTGCAGTGGATC
* *
63361000 GAATTGAAGCTGCAAATCCTATACCCCT-TGGCAGTGGGTC-GAATTGAAGT-TACCATAGTGAA
66 GAATTGAAGCTACAAATCCTATACCCCTATGGCAGTGGGTCAG-ATTGAA-TCTACAATAGTGAA
* * *
63361062 TCTTATCTCCCTAAAGCTGCAATAGAGTAAGA-TGCAGCTACAATTCCTATACCCTTAAAGTTAC
129 TCTTATCTCCCTAAAGCTACAATAGAG-AAGATTGAAGCTACAATTCCTATACCCTTAAAGTTAA
* * * * *
63361126 AGTGGGTTAGAATGATACTACAATGGCGAATCTTATT
193 AATGGGTCAGAATGAAACTACAATGGCAAATCTTATC
* * *
63361163 TCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATA-CCTCTGAAGTTGCAGTGGGT
1 TCTCTGAAGTTGCAGTGGAGCAAGATGAAGCTAGAAATCCTATATCC-CTGAAGTTGCAGTGGAT
* *
63361227 CGGATTGAATCTAC
65 CGAATTGAAGCTAC
63361241 CATAGCGAAT
Statistics
Matches: 255, Mismatches: 44, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
227 3 0.01
228 167 0.65
229 6 0.02
231 1 0.00
232 77 0.30
233 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (229 bp):
TCTCTGAAGTTGCAGTGGAGCAAGATGAAGCTAGAAATCCTATATCCCTGAAGTTGCAGTGGATC
GAATTGAAGCTACAAATCCTATACCCCTATGGCAGTGGGTCAGATTGAATCTACAATAGTGAATC
TTATCTCCCTAAAGCTACAATAGAGAAGATTGAAGCTACAATTCCTATACCCTTAAAGTTAAAAT
GGGTCAGAATGAAACTACAATGGCAAATCTTATC
Found at i:63361292 original size:188 final size:188
Alignment explanation
Indices: 63360979--63361423 Score: 455
Period size: 188 Copynumber: 2.4 Consensus size: 188
63360969 AAATCATACA
* * * * *
63360979 TCCCTGAAGTTGTAGTGGATCGAA-TTGAAGCTGCAAATCCTATACCCCT----TGGCAGTGGGT
1 TCCCTGAAGTTGTAGTGGAGC-AAGATGAAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGGT
* * * *
63361039 CGAATTGAAGTTACCATAGTGAATCTTATCTCCCTAAAGCTGCAATAGAGTAAGATGCAGCTACA
65 CGGATTGAAGTTACCATAGCGAATCTTATCTACCTAAAGCTGCAATAGAGTAAGATGAAGCTACA
* * * * *
63361104 ATTCCTATACCCTTAAAGTTACAGTGGGTTAGAA-TG-ATACTACAATGGCGAATCTTATT
130 AATCCTATACCCCTAAAGTTACAGTGGGTCA-AATTGAAT-CTACAATAGCGAATCTTATC
*
63361163 TCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGGTC
1 TCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGGTC
* * * * *
63361228 GGATTGAA-TCTACCATAGCGAATCTTATCTACCTGAAA-TTGTAGTGGAG-CAGATTGAAGCTA
66 GGATTGAAGT-TACCATAGCGAATCTTATCTACCT-AAAGCTGCAATAGAGTAAGA-TGAAGCTA
* * * * * *
63361290 CAAATCCTATACCCCTGAAGTTGCAGTTGGTCAAATTGAATCTACTATAGTGAATTTTATC
128 CAAATCCTATACCCCTAAAGTTACAGTGGGTCAAATTGAATCTACAATAGCGAATCTTATC
* * * *
63361351 TCCCTGATGTTGTAGTGTAG-AAGATTGAAGCTACAAATCCTATACCAT-TGAAGTTGCGGTGGA
1 TCCCTGAAGTTGTAGTGGAGCAAGA-TGAAGCTACAAATCCTATACC-TCTGAAGTTGCAGTGGG
*
63361414 TTGGATTGAA
64 TCGGATTGAA
63361424 ATTAAAATAA
Statistics
Matches: 217, Mismatches: 32, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
183 2 0.01
184 41 0.19
187 10 0.05
188 158 0.73
189 6 0.03
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (188 bp):
TCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGGTC
GGATTGAAGTTACCATAGCGAATCTTATCTACCTAAAGCTGCAATAGAGTAAGATGAAGCTACAA
ATCCTATACCCCTAAAGTTACAGTGGGTCAAATTGAATCTACAATAGCGAATCTTATC
Found at i:63361329 original size:44 final size:44
Alignment explanation
Indices: 63361164--63361413 Score: 125
Period size: 44 Copynumber: 5.4 Consensus size: 44
63361154 AATCTTATTT
63361164 CCCTGAAGTTGCAGTGGAGCAAGA-TGAAGCTACAAATCCTATAC
1 CCCTGAAGTTGCAGTGGAGCAA-ATTGAAGCTACAAATCCTATAC
* ** * *
63361208 CTCTGAAGTTGCAGTGG-GTCGGATTGAATCTACCATAGCGAATCTTAT-C
1 CCCTGAAGTTGCAGTGGAG-CAAATTGAAGCTA-C--A---AATCCTATAC
* * * *
63361257 TACCTGAAATTGTAGTGGAGCAGATTGAAGCTACAAATCCTATAC
1 -CCCTGAAGTTGCAGTGGAGCAAATTGAAGCTACAAATCCTATAC
* * **
63361302 CCCTGAAGTTGCAGTTGG-TCAAATTGAATCTACTATAGTGAATTTTAT-C
1 CCCTGAAGTTGCAG-TGGAGCAAATTGAAGCTAC---A---AATCCTATAC
* * *
63361351 TCCCTGATGTTGTAGTGTAG-AAGATTGAAGCTACAAATCCTATAC
1 -CCCTGAAGTTGCAGTGGAGCAA-ATTGAAGCTACAAATCCTATAC
** *
63361396 CATTGAAGTTGCGGTGGA
1 CCCTGAAGTTGCAGTGGA
63361414 TTGGATTGAA
Statistics
Matches: 151, Mismatches: 33, Indels: 44
0.66 0.14 0.19
Matches are distributed among these distances:
43 2 0.01
44 72 0.48
45 6 0.04
47 4 0.03
49 7 0.05
50 59 0.39
51 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (44 bp):
CCCTGAAGTTGCAGTGGAGCAAATTGAAGCTACAAATCCTATAC
Found at i:63361403 original size:94 final size:93
Alignment explanation
Indices: 63360979--63361412 Score: 397
Period size: 94 Copynumber: 4.7 Consensus size: 93
63360969 AAATCATACA
*
63360979 TCCCTGAAGTTGTAGTGGATCG-A-ATTGAAGCTGCAAATCCTATACCCCTT---G--GCAGTGG
1 TCCCTGAAGTTGTAGTGGA--GAAGATTGAAGCTACAAATCCTATA--CCTTGAAGTTGCAGTGG
* *
63361037 GTCGAATTGAAGT-TACCATAGTGAATCTTATC
62 GTCAAATTGAA-TCTACCATAGCGAATCTTATC
* * * * * * * * *
63361069 TCCCTAAAGCTGCAATAGAGTAAGA-TGCAGCTACAATTCCTATACCCTTAAAGTTACAGTGGGT
1 TCCCTGAAGTTGTAGTGGAG-AAGATTGAAGCTACAAATCCTATA-CCTTGAAGTTGCAGTGGGT
* * * *
63361133 TAGAA-TG-ATACTACAATGGCGAATCTTATT
64 CA-AATTGAAT-CTACCATAGCGAATCTTATC
*
63361163 TCCCTGAAGTTGCAGTGGAGCAAGA-TGAAGCTACAAATCCTATACCTCTGAAGTTGCAGTGGGT
1 TCCCTGAAGTTGTAGTGGAG-AAGATTGAAGCTACAAATCCTATACCT-TGAAGTTGCAGTGGGT
**
63361227 CGGATTGAATCTACCATAGCGAATCTTATC
64 CAAATTGAATCTACCATAGCGAATCTTATC
* * * * *
63361257 TACCTGAAATTGTAGTGGAGCAGATTGAAGCTACAAATCCTATACCCCTGAAGTTGCAGTTGGTC
1 TCCCTGAAGTTGTAGTGGAGAAGATTGAAGCTACAAATCCTATA-CCTTGAAGTTGCAGTGGGTC
* * *
63361322 AAATTGAATCTACTATAGTGAATTTTATC
65 AAATTGAATCTACCATAGCGAATCTTATC
* * *
63361351 TCCCTGATGTTGTAGTGTAGAAGATTGAAGCTACAAATCCTATACCATTGAAGTTGCGGTGG
1 TCCCTGAAGTTGTAGTGGAGAAGATTGAAGCTACAAATCCTATACC-TTGAAGTTGCAGTGG
63361413 ATTGGATTGA
Statistics
Matches: 278, Mismatches: 49, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
88 1 0.00
89 5 0.02
90 31 0.11
91 1 0.00
92 2 0.01
93 10 0.04
94 222 0.80
95 6 0.02
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (93 bp):
TCCCTGAAGTTGTAGTGGAGAAGATTGAAGCTACAAATCCTATACCTTGAAGTTGCAGTGGGTCA
AATTGAATCTACCATAGCGAATCTTATC
Found at i:63363519 original size:45 final size:44
Alignment explanation
Indices: 63363420--63363588 Score: 220
Period size: 45 Copynumber: 3.8 Consensus size: 44
63363410 ATTCATCCAT
* *
63363420 CGGCATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATATCATTTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAT-ATTTCAC
* *
63363462 CGGCATTATAGCCTGCTAGGCTCGAAGGCCTGAATAGTATTTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA-TATTTCAC
*
63363507 CGGCATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTT-AC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT-ATAT-TTCAC
*
63363552 CGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAT
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAT
63363589 TACTGTACGA
Statistics
Matches: 114, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
42 7 0.06
43 17 0.15
44 6 0.05
45 80 0.70
46 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (44 bp):
CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATATTTCAC
Found at i:63374159 original size:43 final size:44
Alignment explanation
Indices: 63374093--63374263 Score: 152
Period size: 45 Copynumber: 3.9 Consensus size: 44
63374083 CGAATTCATC
* * * *
63374093 CACCGGCATTTCGCCTGCTAGGCTCGAA-GCTC-GATA-TCATTT
1 CACCGGCATTTAGCCTACTAGGCTCGAAGGCCCTAATAGT-ATTT
*
63374135 CATCGGCATTATAGCCTACTAGGCTCGAAGGCCCTAATAGTATTT
1 CACCGGCATT-TAGCCTACTAGGCTCGAAGGCCCTAATAGTATTT
* * *
63374180 CACCGGTATTGTAGCCTACTAGGCTCAAAGG-CCTGAATAGTATCT
1 CACCGGCATT-TAGCCTACTAGGCTCGAAGGCCCT-AATAGTATTT
* * ** *
63374225 CACCGGCATCATAGCCTGCTAGGCTTAAAGGCCCGAATA
1 CACCGGCAT-TTAGCCTACTAGGCTCGAAGGCCCTAATA
63374264 TTACTGTACG
Statistics
Matches: 107, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
42 9 0.08
43 16 0.15
44 6 0.06
45 73 0.68
46 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (44 bp):
CACCGGCATTTAGCCTACTAGGCTCGAAGGCCCTAATAGTATTT
Found at i:63374196 original size:45 final size:45
Alignment explanation
Indices: 63374131--63374263 Score: 169
Period size: 45 Copynumber: 3.0 Consensus size: 45
63374121 GCTCGATATC
* *
63374131 ATTTCATCGGCATTATAGCCTACTAGGCTCGAAGGCCCTAATAGT
1 ATTTCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCTAATAGT
* *
63374176 ATTTCACCGGTATTGTAGCCTACTAGGCTCAAAGG-CCTGAATAGT
1 ATTTCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCT-AATAGT
* * * * *
63374221 ATCTCACCGGCATCATAGCCTGCTAGGCTTAAAGGCCCGAATA
1 ATTTCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCTAATA
63374264 TTACTGTACG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 3 0.04
45 70 0.93
46 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (45 bp):
ATTTCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCTAATAGT
Found at i:63385511 original size:21 final size:20
Alignment explanation
Indices: 63385474--63385512 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
63385464 GAAATTGGAC
**
63385474 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
63385494 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
63385513 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:63392992 original size:28 final size:28
Alignment explanation
Indices: 63392960--63393015 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
63392950 CATTGCTACC
63392960 TAAGTTACGAGAAGTCATGATTCGACAT
1 TAAGTTACGAGAAGTCATGATTCGACAT
*
63392988 TAAGTTATGAGAAGTCATGATTCGACAT
1 TAAGTTACGAGAAGTCATGATTCGACAT
63393016 AACCTTTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (28 bp):
TAAGTTACGAGAAGTCATGATTCGACAT
Found at i:63399280 original size:8 final size:8
Alignment explanation
Indices: 63399266--63399323 Score: 55
Period size: 9 Copynumber: 7.0 Consensus size: 8
63399256 ATTCTATTTC
63399266 AAAAAAAGG
1 AAAAAAA-G
*
63399275 AAAAAAAA
1 AAAAAAAG
63399283 AAGAAAAAG
1 AA-AAAAAG
* *
63399292 AGAAAAAT
1 AAAAAAAG
63399300 AATAAAAAG
1 AA-AAAAAG
63399309 -AAAAAAG
1 AAAAAAAG
63399316 AAAAAAAG
1 AAAAAAAG
63399324 GAGAGGCCAA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
7 6 0.15
8 16 0.40
9 18 0.45
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:63399289 original size:7 final size:7
Alignment explanation
Indices: 63399275--63399321 Score: 53
Period size: 7 Copynumber: 6.6 Consensus size: 7
63399265 CAAAAAAAGG
63399275 AAAA-AA
1 AAAAGAA
63399281 AAAAGAA
1 AAAAGAA
63399288 AAAGAGAA
1 AAA-AGAA
63399296 AAATA-ATA
1 AAA-AGA-A
63399304 AAAAGAA
1 AAAAGAA
63399311 AAAAGAA
1 AAAAGAA
63399318 AAAA
1 AAAA
63399322 AGGAGAGGCC
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
6 4 0.11
7 19 0.53
8 13 0.36
ACGTcount: A:0.85, C:0.00, G:0.11, T:0.04
Consensus pattern (7 bp):
AAAAGAA
Found at i:63400653 original size:84 final size:84
Alignment explanation
Indices: 63400268--63401643 Score: 2020
Period size: 84 Copynumber: 16.4 Consensus size: 84
63400258 CAAAATTCAG
* * *
63400268 CGCCTTAATCCTCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
*
63400333 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAAACT
* * *
63400352 CGCTTTAATCCCCTAAGCAGTAGGGTAATAGG-----TTTGCATATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
*
63400412 GCGGAGCAGATCGACAATGACT
66 GTGGAGCAGATCGA-AA--ACT
* *
63400434 CGCCTTAATCCCCTAAGCACTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
*** *
63400499 CCAGAGCAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-AACT
* *
63400521 CACCTTCATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
* * * *
63400586 GTGTAACAGATCGAAGACC
66 GTGGAGCAGATCGAAAACT
** *
63400605 CGCCTTAATCCCCTAAGGGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
63400670 GTGGAGCAGATCGAAAACT
66 GTGGAGCAGATCGAAAACT
* *
63400689 CGCCTTAATCCCCTAAGCAGTAGGGTAATAGG-----TTTGCATATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
* *
63400749 GCGGAGCAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-AACT
* * *
63400771 CGCCTTAATCCCCTAATCACTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
63400836 GTGGAGCAGATCGAAAACT
66 GTGGAGCAGATCGAAAACT
63400855 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
63400920 GTGGAGCAGATCGAAAACT
66 GTGGAGCAGATCGAAAACT
63400939 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
63401004 GTGGAGCAGATCGAAAACT
66 GTGGAGCAGATCGAAAACT
63401023 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
63401088 GTGGAGCAGATCGAAAACT
66 GTGGAGCAGATCGAAAACT
63401107 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
63401172 GTGGAGCAGATCGAAAACT
66 GTGGAGCAGATCGAAAACT
63401191 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
63401256 GTGGAGCAGATCGAAAACT
66 GTGGAGCAGATCGAAAACT
* *
63401275 CGCCTTAATCCCCTAAGCAGTAGGGTAATAGG-----TTTGCATATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
* *
63401335 GCGGAGCAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-AACT
* * *
63401357 CGCCTTAATCCCCTAATCACTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
*
63401422 GTGGAGCAAATCGAAAACT
66 GTGGAGCAGATCGAAAACT
* * *
63401441 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGAAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
* *
63401501 GCGGAGCAGATCGACCACGACT
66 GTGGAGCAGATCGA--A-AACT
* *
63401523 CACCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
* *
63401588 GTGGAGTAGATCGAAGA-T
66 GTGGAGCAGATCGAAAACT
* *
63401606 GCGCCTTAACCCCCTAAGCAGTAGGGTAACATGTTAAA
1 -CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
63401644 GTATAGCAAA
Statistics
Matches: 1179, Mismatches: 78, Indels: 70
0.89 0.06 0.05
Matches are distributed among these distances:
79 158 0.13
80 1 0.00
81 3 0.00
82 129 0.11
83 1 0.00
84 654 0.55
85 4 0.00
87 228 0.19
88 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAAACT
Found at i:63401032 original size:168 final size:168
Alignment explanation
Indices: 63400268--63401643 Score: 2047
Period size: 166 Copynumber: 8.2 Consensus size: 168
63400258 CAAAATTCAG
* *
63400268 CGCCTTAATCCTCTAAGCAGTAGGGTAACAAGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * * *
63400333 GTGGAGCAGATCGAAGACTCGCTTTAATCCCCTAAGCAGTAGGGTAATAGG-----TTTGCATAT
66 GTGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAAT
*
63400393 CTTATCTCCCTAAGCAGTAGCGGAGCAGATCGACAATGACT
131 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA-AA--ACT
*
63400434 CGCCTTAATCCCCTAAGCACTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*** * * *
63400499 CCAGAGCAGATCGACGACGACTCACCTTCATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA
66 GTGGAGCAGATCGA--A-AACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA
* * * *
63400564 AATCTTATCTCCCTAAGCAGTAGTGTAACAGATCGAAGACC
128 AATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACT
**
63400605 CGCCTTAATCCCCTAAGGGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
63400670 GTGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAATAGG-----TTTGCATAT
66 GTGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAAT
* *
63400730 CTTATCTCCCTAAGCAGTAGCGGAGCAGATCGACGACGACT
131 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA--A-AACT
* *
63400771 CGCCTTAATCCCCTAATCACTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
63400836 GTGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAAT
66 GTGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAAT
63400901 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACT
131 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACT
*
63400939 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
63401004 GTGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAAT
66 GTGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAAT
63401069 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACT
131 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACT
*
63401107 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
63401172 GTGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAAT
66 GTGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAAT
63401237 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACT
131 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACT
* *
63401275 CGCCTTAATCCCCTAAGCAGTAGGGTAATAGG-----TTTGCATATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * * *
63401335 GCGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAATCACTAGGGTAACAGGTTAAATTTGCA
66 GTGGAGCAGATCGA--A-AACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA
* *
63401400 GATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAAACT
128 AATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACT
* *
63401441 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGAAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * * *
63401501 GCGGAGCAGATCGACCACGACTCACCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCA
66 GTGGAGCAGATCGA--A-AACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA
* *
63401566 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGA-T
128 AATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACT
* *
63401606 GCGCCTTAACCCCCTAAGCAGTAGGGTAACATGTTAAA
1 -CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
63401644 GTATAGCAAA
Statistics
Matches: 1120, Mismatches: 65, Indels: 45
0.91 0.05 0.04
Matches are distributed among these distances:
163 78 0.07
165 3 0.00
166 451 0.40
168 400 0.36
169 34 0.03
171 115 0.10
173 1 0.00
174 38 0.03
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (168 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAAACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAAAT
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAACT
Found at i:63402484 original size:19 final size:19
Alignment explanation
Indices: 63402460--63402546 Score: 142
Period size: 19 Copynumber: 4.7 Consensus size: 19
63402450 AATCTTTAAG
*
63402460 GATATGCAATCTTAGGTAT
1 GATATGCAATCTTAGATAT
63402479 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
63402498 GATA--CAATCTTAGATTT
1 GATATGCAATCTTAGATAT
63402515 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
63402534 GATATGCAATCTT
1 GATATGCAATCTT
63402547 GAAGATATCA
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
17 16 0.25
19 47 0.75
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:63402490 original size:36 final size:35
Alignment explanation
Indices: 63402450--63402546 Score: 90
Period size: 36 Copynumber: 2.6 Consensus size: 35
63402440 TATGAAATAT
*
63402450 AATCTTTAAGGATATGCAATCTTAGGTATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
*
63402486 AATC-TT-AGATATGATACAATCTTAGATTTGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
63402522 AATCTTAGATATGATATGCAATCTT
1 AATCTT---TAAGATATGCAATCTT
63402547 GAAGATATCA
Statistics
Matches: 50, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
33 6 0.12
34 1 0.02
35 2 0.04
36 26 0.52
37 1 0.02
38 7 0.14
40 1 0.02
41 6 0.12
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.38
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:63426270 original size:22 final size:22
Alignment explanation
Indices: 63426233--63426282 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
63426223 AACAACATAG
63426233 TAAAT-AATATATGATAAAATA
1 TAAATAAATATATGATAAAATA
*
63426254 TAAATAAATA-ATAGATAATATA
1 TAAATAAATATAT-GATAAAATA
63426276 TATAATA
1 TA-AATA
63426283 GACAACATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 7 0.28
22 14 0.56
23 4 0.16
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (22 bp):
TAAATAAATATATGATAAAATA
Found at i:63427110 original size:17 final size:17
Alignment explanation
Indices: 63427083--63427120 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
63427073 TGTATGTATT
63427083 GAAAAAAAACAA-AAAC
1 GAAAAAAAACAATAAAC
63427099 GAAAAAATAACAATAAAC
1 GAAAAAA-AACAATAAAC
63427117 -AAAA
1 GAAAA
63427121 TATCACCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
17 9 0.45
18 4 0.20
ACGTcount: A:0.79, C:0.11, G:0.05, T:0.05
Consensus pattern (17 bp):
GAAAAAAAACAATAAAC
Found at i:63428131 original size:44 final size:44
Alignment explanation
Indices: 63428031--63428415 Score: 515
Period size: 44 Copynumber: 8.7 Consensus size: 44
63428021 CTTGGATCTG
* * * * *
63428031 GAGATGCCAAATTTGCT-TCTTGGATTTGCTCCTCGTCAAAATAC-
1 GAGATGCCAAATCTGCTATCTTCGATCTGCT-CTC-TGACAATACA
*
63428075 GAAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACA
1 G-AGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
* * *
63428120 GAGATGGCAAATCTGCTATCTTTGATCTGCTCTCTGATAATACA
1 GAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
** *
63428164 GAGATGCCAAATCTGCTATCTTCGATCTATTCTCTGACAATACT
1 GAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
*
63428208 GAGATGTCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
1 GAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
*
63428252 GAGATGCCAAATATGCTATCTTCGAT-TCGCTCTCTGACAATACA
1 GAGATGCCAAATCTGCTATCTTCGATCT-GCTCTCTGACAATACA
** *
63428296 GAGACACCAAATCTGCTATCTTCAATCTGCTCTCTGACAATACA
1 GAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
* **
63428340 GAGACGCCAAATCTGCTATCTTTAATCTGCTCTCTGACAATACA
1 GAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
* *
63428384 AAGATGCCAAATCTACTATCTTCGATCTGCTC
1 GAGATGCCAAATCTGCTATCTTCGATCTGCTC
63428416 CTTGTAAATG
Statistics
Matches: 303, Mismatches: 33, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
43 1 0.00
44 272 0.90
45 19 0.06
46 11 0.04
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (44 bp):
GAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACA
Found at i:63442661 original size:17 final size:17
Alignment explanation
Indices: 63442639--63442671 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
63442629 TAAATGGACT
*
63442639 GTTTAATTTTATTTTTC
1 GTTTAATTTCATTTTTC
63442656 GTTTAATTTCATTTTT
1 GTTTAATTTCATTTTT
63442672 TAATTTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.70
Consensus pattern (17 bp):
GTTTAATTTCATTTTTC
Found at i:63443365 original size:44 final size:44
Alignment explanation
Indices: 63443002--63443340 Score: 509
Period size: 44 Copynumber: 7.7 Consensus size: 44
63442992 CAAAATATGA
*
63443002 AGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACAG
1 AGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAG
* *
63443046 AGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGATAATACAG
1 AGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAG
** *
63443090 AGATGCCAAATCTGCTATCTTCGATCTATTCTCTGACAATACTG
1 AGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAG
* * *
63443134 AGATGTCAAATCTGCTATGTTCGATCTGCTCTCTAACAATACAG
1 AGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAG
*
63443178 AGATGCCAAATTTGCTATCTTCGAT-TCGCTCTCTGACAATACAG
1 AGATGCCAAATCTGCTATCTTCGATCT-GCTCTCTGACAATACAG
** *
63443222 AGACACCAAATCTGCTATCTTCAATCTGCTCTCTGACAATACAG
1 AGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAG
* * * *
63443266 AGACGCCAAATTTGCTATCTTCGATCTGTTCTCTGACAATACAA
1 AGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAG
63443310 AGATGCCAAATCTGCTATCTTCGATCTGCTC
1 AGATGCCAAATCTGCTATCTTCGATCTGCTC
63443341 CTTGTAAATG
Statistics
Matches: 263, Mismatches: 30, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
43 1 0.00
44 261 0.99
45 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (44 bp):
AGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAG
Found at i:63447711 original size:28 final size:28
Alignment explanation
Indices: 63447668--63447721 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
63447658 ATGCGTGCCG
* *
63447668 ATTTTCAGCTCTTTCCCATCCTCTAGCA
1 ATTTTCACCTCATTCCCATCCTCTAGCA
*
63447696 ATTTTCACCTCATTCCCTTCCTCTAG
1 ATTTTCACCTCATTCCCATCCTCTAG
63447722 GGCTACATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.17, C:0.37, G:0.06, T:0.41
Consensus pattern (28 bp):
ATTTTCACCTCATTCCCATCCTCTAGCA
Found at i:63457490 original size:29 final size:29
Alignment explanation
Indices: 63457410--63457529 Score: 86
Period size: 33 Copynumber: 4.0 Consensus size: 29
63457400 TGTTAAAATT
* * *
63457410 ATAATAATAA-AGATA-AAGATAAACAAC
1 ATAATAATAATATATATAATATAAATAAC
63457437 ATAATAAATAATATATGATAAAATATAAATAA-
1 ATAAT-AATAATATAT-AT--AATATAAATAAC
*
63457469 ATAATAGATAATATATATAATAGACAACATAAC
1 ATAATA-ATAATATATATAAT--ATAA-ATAAC
*
63457502 ATAATAATATAAATATATAATA-AAATAA
1 ATAATAATA-ATATATATAATATAAATAA
63457530 TATACGATAA
Statistics
Matches: 76, Mismatches: 5, Indels: 22
0.74 0.05 0.21
Matches are distributed among these distances:
27 5 0.07
28 5 0.07
29 10 0.13
30 3 0.04
31 7 0.09
32 21 0.28
33 25 0.33
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (29 bp):
ATAATAATAATATATATAATATAAATAAC
Found at i:63457601 original size:25 final size:25
Alignment explanation
Indices: 63457573--63457633 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
63457563 GTTTATAGTC
*
63457573 AAATAAATAATATACAA-AATATTTA-
1 AAATAAATAA-ATA-AATAAAATTTAG
63457598 AAATAAATAAATAAATAAAATTTAG
1 AAATAAATAAATAAATAAAATTTAG
*
63457623 AAATATATAAA
1 AAATAAATAAA
63457634 AAAGGATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 2 0.06
24 10 0.31
25 20 0.62
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (25 bp):
AAATAAATAAATAAATAAAATTTAG
Found at i:63458327 original size:61 final size:60
Alignment explanation
Indices: 63458221--63458342 Score: 183
Period size: 61 Copynumber: 2.0 Consensus size: 60
63458211 AAGGTAACCC
63458221 TCTTTCCCACTTTTTAGTAATATTCTTTAAAAATGTTGTTTTGTATGTATTGAAAAAAAAAA
1 TCTTTCCCACTTTTTAG--ATATTCTTTAAAAATGTTGTTTTGTATGTATTGAAAAAAAAAA
* *
63458283 NTCTTTCCCTCTTTTTAG-TATTCTTTAAAAAATGTTGTTTTGTATGTGTTGAAAAAAAAA
1 -TCTTTCCCACTTTTTAGATATTCTTT-AAAAATGTTGTTTTGTATGTATTGAAAAAAAAA
63458343 CAGAAACAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
60 8 0.14
61 32 0.57
63 16 0.29
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.46
Consensus pattern (60 bp):
TCTTTCCCACTTTTTAGATATTCTTTAAAAATGTTGTTTTGTATGTATTGAAAAAAAAAA
Found at i:63458356 original size:17 final size:18
Alignment explanation
Indices: 63458334--63458371 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
63458324 GTATGTGTTG
63458334 AAAAAAAAAC-AGAAACA
1 AAAAAAAAACAAGAAACA
* *
63458351 AAAAAATAACAATAAACA
1 AAAAAAAAACAAGAAACA
63458369 AAA
1 AAA
63458372 TATCACCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.82, C:0.11, G:0.03, T:0.05
Consensus pattern (18 bp):
AAAAAAAAACAAGAAACA
Found at i:63458974 original size:17 final size:16
Alignment explanation
Indices: 63458951--63458993 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 16
63458941 TTAAATGGAC
63458951 TGTTTAATTTTATTTT
1 TGTTTAATTTTATTTT
*
63458967 TCGTTTAATTTCATTTT
1 T-GTTTAATTTTATTTT
63458984 T-TTTAATTTT
1 TGTTTAATTTT
63458994 TGTAAGCCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 8 0.33
16 1 0.04
17 15 0.62
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.72
Consensus pattern (16 bp):
TGTTTAATTTTATTTT
Found at i:63470485 original size:19 final size:17
Alignment explanation
Indices: 63470461--63470495 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
63470451 TTTTTTAAAA
63470461 TAATTTATGAATTATTTAT
1 TAATTTAT--ATTATTTAT
63470480 TAATTTATATTATTTA
1 TAATTTATATTATTTA
63470496 AATTATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
19 8 0.50
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (17 bp):
TAATTTATATTATTTAT
Found at i:63470500 original size:19 final size:20
Alignment explanation
Indices: 63470448--63470500 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
63470438 ACAATTCATG
* *
63470448 TAATTTTTTAAAATAATTTA
1 TAATTATTTAAATTAATTTA
63470468 TGAATTATTT--ATTAATTTA
1 T-AATTATTTAAATTAATTTA
63470487 T-ATTATTTAAATTA
1 TAATTATTTAAATTA
63470501 TTATTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
17 7 0.25
19 13 0.46
20 1 0.04
21 7 0.25
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
TAATTATTTAAATTAATTTA
Found at i:63471802 original size:83 final size:84
Alignment explanation
Indices: 63471662--63471824 Score: 310
Period size: 83 Copynumber: 2.0 Consensus size: 84
63471652 AAAAGACAGA
63471662 AATCATTCTCTCTTTGTAGTGAAAAAAAATAAAGTATGGCTATTCAATTTAATTTTGTTTCATCC
1 AATCATTCTCTCTTTGTAGTGAAAAAAAATAAAGTATGGCTATTCAATTTAATTTTGTTTCATCC
*
63471727 ATGTTATTACTAGTATTTC
66 ATGTTAATACTAGTATTTC
63471746 AATCATTCTCTCTTTGTAGTG-AAAAAAATAAAGTATGGCTATTCAATTTAATTTTGTTTCATCC
1 AATCATTCTCTCTTTGTAGTGAAAAAAAATAAAGTATGGCTATTCAATTTAATTTTGTTTCATCC
63471810 ATGTTAATACTAGTA
66 ATGTTAATACTAGTA
63471825 CTTCTGTCCA
Statistics
Matches: 78, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
83 57 0.73
84 21 0.27
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (84 bp):
AATCATTCTCTCTTTGTAGTGAAAAAAAATAAAGTATGGCTATTCAATTTAATTTTGTTTCATCC
ATGTTAATACTAGTATTTC
Found at i:63473579 original size:23 final size:24
Alignment explanation
Indices: 63473531--63473580 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
63473521 TTATTTAATT
*
63473531 ATTTTGTTTTTTTTCTTTATATAA
1 ATTTTGTTTTTTTTATTTATATAA
63473555 ATTTT-TTATTTTTTATTTATA-AA
1 ATTTTGTT-TTTTTTATTTATATAA
63473578 ATT
1 ATT
63473581 GGCATAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (24 bp):
ATTTTGTTTTTTTTATTTATATAA
Found at i:63476185 original size:22 final size:22
Alignment explanation
Indices: 63476160--63476210 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
63476150 TGCATGTGTG
63476160 AACCTCTTCCATGCATTGTGCA
1 AACCTCTTCCATGCATTGTGCA
* * * *
63476182 AACCTCATCTATGCGTTGTGCG
1 AACCTCTTCCATGCATTGTGCA
63476204 AA-CTCTT
1 AACCTCTT
63476211 AGCATGAATC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (22 bp):
AACCTCTTCCATGCATTGTGCA
Found at i:63486709 original size:22 final size:22
Alignment explanation
Indices: 63486684--63486734 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
63486674 TGCATGTGTG
63486684 AACCTCTTCCATGCATTGTGCA
1 AACCTCTTCCATGCATTGTGCA
* * * *
63486706 AACCTCATCTATGCGTTGTGCG
1 AACCTCTTCCATGCATTGTGCA
63486728 AA-CTCTT
1 AACCTCTT
63486735 AGCATGAATC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (22 bp):
AACCTCTTCCATGCATTGTGCA
Found at i:63489470 original size:115 final size:115
Alignment explanation
Indices: 63489268--63489490 Score: 437
Period size: 115 Copynumber: 1.9 Consensus size: 115
63489258 AGGTCAAAAC
63489268 GCATCCCATTTTCGATCCTCAAGCATTTATCCTACTTCATGGTGATCACACCTTGAGCATATCCA
1 GCATCCCATTTTCGATCCTCAAGCATTTATCCTACTTCATGGTGATCACACCTTGAGCATATCCA
63489333 CTGAGCCTCAGGAATTCAACCTCATATTCTATCACAGACTTGTGCGAAAG
66 CTGAGCCTCAGGAATTCAACCTCATATTCTATCACAGACTTGTGCGAAAG
*
63489383 GCATCCCATTTTCGATCCTCAAGCATTTATCCTACTTCATGGTGATCACAGCTTGAGCATATCCA
1 GCATCCCATTTTCGATCCTCAAGCATTTATCCTACTTCATGGTGATCACACCTTGAGCATATCCA
63489448 CTGAGCCTCAGGAATTCAACCTCATATTCTATCACAGACTTGT
66 CTGAGCCTCAGGAATTCAACCTCATATTCTATCACAGACTTGT
63489491 CTCCTTGTTC
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
115 107 1.00
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.30
Consensus pattern (115 bp):
GCATCCCATTTTCGATCCTCAAGCATTTATCCTACTTCATGGTGATCACACCTTGAGCATATCCA
CTGAGCCTCAGGAATTCAACCTCATATTCTATCACAGACTTGTGCGAAAG
Found at i:63492025 original size:83 final size:83
Alignment explanation
Indices: 63491917--63492081 Score: 321
Period size: 83 Copynumber: 2.0 Consensus size: 83
63491907 ATTGAATGGA
63491917 TATTATTTTAAAAAACAAAACATACCATTAAATTGAAATAAAATAAAAGCATACTTGCATATTAT
1 TATTATTTTAAAAAACAAAACATACCATTAAATTGAAATAAAATAAAAGCATACTTGCATATTAT
*
63491982 GTTTATTAATGATACTTT
66 GTTTATTAACGATACTTT
63492000 TATTATTTTAAAAAACAAAACATACCATTAAATTGAAATAAAATAAAAGCATACTTGCATATTAT
1 TATTATTTTAAAAAACAAAACATACCATTAAATTGAAATAAAATAAAAGCATACTTGCATATTAT
63492065 GTTTATTAACGATACTT
66 GTTTATTAACGATACTT
63492082 AGTAGCATTA
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 81 1.00
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.36
Consensus pattern (83 bp):
TATTATTTTAAAAAACAAAACATACCATTAAATTGAAATAAAATAAAAGCATACTTGCATATTAT
GTTTATTAACGATACTTT
Found at i:63493804 original size:224 final size:224
Alignment explanation
Indices: 63493414--63493863 Score: 837
Period size: 224 Copynumber: 2.0 Consensus size: 224
63493404 AAGGCTCCTA
63493414 TTGAGCTTCAAGTTCAAGGCACTGTGAAGGCTCCGGCAGACCCTGGTGCTTTCAAGGAGCCTAAA
1 TTGAGCTTCAAGTTCAAGGCACTGTGAAGGCTCCGGCAGACCCTGGTGCTTTCAAGGAGCCTAAA
63493479 TGGATTGCTTTCAATAGAATTGAAAATTTCAAATTCTCTGGCAGAGGAGTTTTCGACGGCCAGGG
66 TGGATTGCTTTCAATAGAATTGAAAATTTCAAATTCTCTGGCAGAGGAGTTTTCGACGGCCAGGG
*
63493544 AACCACTGCTTATAAAAGGGAAGGTTGCAAAGGTCATAATTATTGTGGTTCACTTCCTATTGTAA
131 AACCACTGCTTATAAAAGGGAAGGTTGCAAAGGTCATAATTATTGCGGTTCACTTCCTATTGTAA
*
63493609 GTTATTTTCTTATTGAGAAGTTATGACTT
196 GTTACTTTCTTATTGAGAAGTTATGACTT
63493638 TTGAGCTTCAAGTTCAAGGCACTGTGAAGGCTCCGGCAGACCCTGGTGCTTTCAAGGAGCCTAAA
1 TTGAGCTTCAAGTTCAAGGCACTGTGAAGGCTCCGGCAGACCCTGGTGCTTTCAAGGAGCCTAAA
* * * *
63493703 TGGATTGCTTTCAATAGAATTGAAATTTTCAAATTGTCTGGCGGAGGAGTTTTTGACGGCCAGGG
66 TGGATTGCTTTCAATAGAATTGAAAATTTCAAATTCTCTGGCAGAGGAGTTTTCGACGGCCAGGG
*
63493768 AACCACTGCTTATAAAAGGGAAGGTTGCAAAGGTCATGATTATTGCGGTTCACTTCCTATTGTAA
131 AACCACTGCTTATAAAAGGGAAGGTTGCAAAGGTCATAATTATTGCGGTTCACTTCCTATTGTAA
63493833 GTTACTTTCTTATTGAGAAGTTATGACTT
196 GTTACTTTCTTATTGAGAAGTTATGACTT
63493862 TT
1 TT
63493864 TTTTTATAAA
Statistics
Matches: 219, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
224 219 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (224 bp):
TTGAGCTTCAAGTTCAAGGCACTGTGAAGGCTCCGGCAGACCCTGGTGCTTTCAAGGAGCCTAAA
TGGATTGCTTTCAATAGAATTGAAAATTTCAAATTCTCTGGCAGAGGAGTTTTCGACGGCCAGGG
AACCACTGCTTATAAAAGGGAAGGTTGCAAAGGTCATAATTATTGCGGTTCACTTCCTATTGTAA
GTTACTTTCTTATTGAGAAGTTATGACTT
Found at i:63494111 original size:102 final size:102
Alignment explanation
Indices: 63493935--63494138 Score: 381
Period size: 102 Copynumber: 2.0 Consensus size: 102
63493925 TAAGGTTTGA
*
63493935 TTTTTTAACCAACGCAATGATACAAGATATAACTACTAAAGACAGCAAGCAGTTCCAGGCTAATG
1 TTTTTTAACCAACGCAATGATACAAGATATAACTACCAAAGACAGCAAGCAGTTCCAGGCTAATG
63494000 TTCTAGGATGCAAAAACATTACTTTCGAACATTTCAC
66 TTCTAGGATGCAAAAACATTACTTTCGAACATTTCAC
*
63494037 TTTTTTAACCAACGCAATGATACAAGATATAACTACCAAAGACAGCAAGCAGTTCTAGGCTAATG
1 TTTTTTAACCAACGCAATGATACAAGATATAACTACCAAAGACAGCAAGCAGTTCCAGGCTAATG
*
63494102 TTTTAGGATGCAAAAACATTACTTTCGAACATTTCAC
66 TTCTAGGATGCAAAAACATTACTTTCGAACATTTCAC
63494139 CGTATCTGCA
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 99 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (102 bp):
TTTTTTAACCAACGCAATGATACAAGATATAACTACCAAAGACAGCAAGCAGTTCCAGGCTAATG
TTCTAGGATGCAAAAACATTACTTTCGAACATTTCAC
Found at i:63494777 original size:32 final size:32
Alignment explanation
Indices: 63494741--63494805 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
63494731 AACTTGCAGA
63494741 CATTGAAATTACGCATAGTGGACCGACTGGAC
1 CATTGAAATTACGCATAGTGGACCGACTGGAC
*
63494773 CATTGAAATTACGCATGGTGGACCGACTGGAC
1 CATTGAAATTACGCATAGTGGACCGACTGGAC
63494805 C
1 C
63494806 TGCAGTATCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (32 bp):
CATTGAAATTACGCATAGTGGACCGACTGGAC
Found at i:63495898 original size:19 final size:19
Alignment explanation
Indices: 63495874--63495960 Score: 142
Period size: 19 Copynumber: 4.7 Consensus size: 19
63495864 TCAGATCTTC
*
63495874 AAGATTGCATATCATGTCT
1 AAGATTGCATATCATATCT
63495893 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
*
63495912 ATGATTG--TATCATATCT
1 AAGATTGCATATCATATCT
63495929 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
63495948 AAGATTGCATATC
1 AAGATTGCATATC
63495961 CTTAAAGATT
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
17 16 0.25
19 47 0.75
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:63495930 original size:36 final size:36
Alignment explanation
Indices: 63495874--63495954 Score: 126
Period size: 36 Copynumber: 2.2 Consensus size: 36
63495864 TCAGATCTTC
*
63495874 AAGATTGCATATCATGTCTAAGATTGCATATCATATCT
1 AAGATTG--TATCATATCTAAGATTGCATATCATATCT
*
63495912 ATGATTGTATCATATCTAAGATTGCATATCATATCT
1 AAGATTGTATCATATCTAAGATTGCATATCATATCT
63495948 AAGATTG
1 AAGATTG
63495955 CATATCCTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
36 34 0.85
38 6 0.15
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38
Consensus pattern (36 bp):
AAGATTGTATCATATCTAAGATTGCATATCATATCT
Found at i:63495969 original size:36 final size:35
Alignment explanation
Indices: 63495874--63495970 Score: 99
Period size: 36 Copynumber: 2.6 Consensus size: 35
63495864 TCAGATCTTC
*
63495874 AAGATTGCATATCATGTCTAAGATTGCATATCATATCT
1 AAGATTGCATATC--CT-TAAGATTGCATATCATATCT
*
63495912 ATGATTGTATCATAT-C-TAAGATTGCATATCATATCT
1 AAGATTG---CATATCCTTAAGATTGCATATCATATCT
63495948 AAGATTGCATATCCTTAAAGATT
1 AAGATTGCATATCCTT-AAGATT
63495971 ATATTTCCAT
Statistics
Matches: 50, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
33 5 0.10
34 1 0.02
35 1 0.02
36 32 0.64
38 6 0.12
41 5 0.10
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38
Consensus pattern (35 bp):
AAGATTGCATATCCTTAAGATTGCATATCATATCT
Found at i:63496732 original size:206 final size:206
Alignment explanation
Indices: 63496354--63497300 Score: 1486
Period size: 206 Copynumber: 4.6 Consensus size: 206
63496344 AATCTGTTAT
* * * *
63496354 CTTTGATATGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTATCATAAGCAC
1 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * * * **
63496419 -TCGAAAACCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATGT
66 AT-GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCT
* * ** * ** *
63496483 TGGATCTGCTTCAGTCTAATTATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCGAATAT
130 TGGATCTGCTTCAATATAAACATATGAAGGACAGATCTGCTATGTGTCTGCTCTCCATCGAATAT
*
63496548 GGAGACACCAAA
195 GGAGACGCCAAA
*
63496560 CTTTGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
63496625 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCATGTAAGCACAAGGATGCCAAATCACCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTT
*
63496690 GGATCTGCTTCAATATAAACATATGAAGGACAGATTTGCTATGTGTCTGCTCTCCATCGAATATG
131 GGATCTGCTTCAATATAAACATATGAAGGACAGATCTGCTATGTGTCTGCTCTCCATCGAATATG
63496755 GAGACGCCAAA
196 GAGACGCCAAA
* *
63496766 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAAC-C
1 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
63496830 ATGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTT
*
63496895 GGATCTGCTTCAATATAAACATATGAAGGACAGATTTGCTATGTGTCTGCTCTCCATCGAATATG
131 GGATCTGCTTCAATATAAACATATGAAGGACAGATCTGCTATGTGTCTGCTCTCCATCGAATATG
63496960 GAGACGCCAAA
196 GAGACGCCAAA
63496971 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * *
63497036 GTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCATGTAAGCACAAGGATGCCAAATCACCTT
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTT
* * * * *
63497101 GGATCTGCTTCAGTATAATCATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCTTCAAATATG
131 GGATCTGCTTCAATATAAACATATGAAGGACAGATCTGCTATGTGTCTGCTCTCCATCGAATATG
63497166 GAGACGCCAAA
196 GAGACGCCAAA
* * * *
63497177 CTTCGATTTGTTCTCTGACACTACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAAC-C
1 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
63497241 ATGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
66 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
63497301 TGCTATCTTC
Statistics
Matches: 688, Mismatches: 51, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
205 256 0.37
206 431 0.63
207 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (206 bp):
CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTT
GGATCTGCTTCAATATAAACATATGAAGGACAGATCTGCTATGTGTCTGCTCTCCATCGAATATG
GAGACGCCAAA
Found at i:63497188 original size:411 final size:411
Alignment explanation
Indices: 63496362--63497300 Score: 1565
Period size: 411 Copynumber: 2.3 Consensus size: 411
63496352 ATCTTTGATA
* * * * * *
63496362 TGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTATCAT-AAGCACTCGAAAA
1 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACCA-T-GAAAG
* * * * * **
63496426 CCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATGTTGGATCTG
64 CCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTG
* * ** * **
63496491 CTTCAGTCTAATTATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCGAATATGGAGACAC
129 CTTCAATATAAACATATGAAGGACAGATCTGCTATGTGTCTGCCCTCCATCGAATATGGAGACAC
*
63496556 CAAACTTTGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAA
194 CAAACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAA
63496621 GCACGTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCATGTAAGCACAAGGATGCCAAATCA
259 GCACGTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCATGTAAGCACAAGGATGCCAAATCA
* *
63496686 CCTTGGATCTGCTTCAATATAAACATATGAAGGACAGATTTGCTATGTGTCTGCTCTCCATCGAA
324 CCTTGGATCTGCTTCAATATAAACATATGAAGGACAGATCTGCTATGTGTCTGCTCTCCATCAAA
*
63496751 TATGGAGACGCCAAACTTTGATT
389 TATGGAGACGCCAAACTTCGATT
63496774 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACCATGAAAGCC
1 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACCATGAAAGCC
63496839 AAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCT
66 AAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCT
* * *
63496904 TCAATATAAACATATGAAGGACAGATTTGCTATGTGTCTGCTCTCCATCGAATATGGAGACGCCA
131 TCAATATAAACATATGAAGGACAGATCTGCTATGTGTCTGCCCTCCATCGAATATGGAGACACCA
63496969 AACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGC
196 AACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGC
63497034 ACGTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCATGTAAGCACAAGGATGCCAAATCACC
261 ACGTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCATGTAAGCACAAGGATGCCAAATCACC
* * * *
63497099 TTGGATCTGCTTCAGTATAATCATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCTTCAAATA
326 TTGGATCTGCTTCAATATAAACATATGAAGGACAGATCTGCTATGTGTCTGCTCTCCATCAAATA
63497164 TGGAGACGCCAAACTTCGATT
391 TGGAGACGCCAAACTTCGATT
*
63497185 TGTTCTCTGACACTACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACCATGAAAGCC
1 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACCATGAAAGCC
63497250 AAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
66 AAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAATC
63497301 TGCTATCTTC
Statistics
Matches: 494, Mismatches: 32, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
411 442 0.89
412 48 0.10
413 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (411 bp):
TGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACCATGAAAGCC
AAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTGCT
TCAATATAAACATATGAAGGACAGATCTGCTATGTGTCTGCCCTCCATCGAATATGGAGACACCA
AACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGC
ACGTGAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCATGTAAGCACAAGGATGCCAAATCACC
TTGGATCTGCTTCAATATAAACATATGAAGGACAGATCTGCTATGTGTCTGCTCTCCATCAAATA
TGGAGACGCCAAACTTCGATT
Found at i:63497300 original size:46 final size:44
Alignment explanation
Indices: 63497247--63497779 Score: 220
Period size: 44 Copynumber: 12.1 Consensus size: 44
63497237 AACCATGAAA
* * * *
63497247 GCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAGCACAAGGAT
1 GCCAAATCAGCTA--TCTTCAACTTGTTCCCTATAAACACAAGGAT
* *
63497293 GCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGAT
1 GCCAAATCAGCTATCTTCAACTTGTTCCCTATAAACACAAGGAT
* * * *
63497337 GCC--AT--GCTAAAATCTTCGA-TCTGCTTCACTGTAAGCAC-AGGAAT
1 GCCAAATCAGCT---ATCTTCAACT-TG-TTCCCTATAAACACAAGG-AT
* * * *
63497381 GTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGAT
1 GCCAAATCAGCTATCTTCAACTTGTTCCCTATAAACACAAGGAT
* * * *
63497425 GCC--AT--GCTAAAATCTTCGA-TCTGCTTCACTGTAAGCAC-AGGAAT
1 GCCAAATCAGCT---ATCTTCAACT-TG-TTCCCTATAAACACAAGG-AT
* * * *
63497469 GTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGAT
1 GCCAAATCAGCTATCTTCAACTTGTTCCCTATAAACACAAGGAT
* * * *
63497513 GCC--AT--GCTAAAATCTTCGA-TCTGCTTCACTGTAAGCAC-AGGAAT
1 GCCAAATCAGCT---ATCTTCAACT-TG-TTCCCTATAAACACAAGG-AT
* * * *
63497557 GTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGAT
1 GCCAAATCAGCTATCTTCAACTTGTTCCCTATAAACACAAGGAT
* * * *
63497601 GCC--AT--GCTAAAATCTTCGA-TCTGCTTCACTGTAAGCAC-AGGAAT
1 GCCAAATCAGCT---ATCTTCAACT-TG-TTCCCTATAAACACAAGG-AT
* * * *
63497645 GTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGAT
1 GCCAAATCAGCTATCTTCAACTTGTTCCCTATAAACACAAGGAT
* *
63497689 GCCAAATCTGCTATATTCAACTTGTTCCCTATAAACAC-AGAGAT
1 GCCAAATCAGCTATCTTCAACTTGTTCCCTATAAACACAAG-GAT
* ** * *
63497733 GCC--ATGCTGAAATCTTCAACTTGTTCCCTATAAACATAGGGAT
1 GCCAAAT-CAGCTATCTTCAACTTGTTCCCTATAAACACAAGGAT
63497776 GCCA
1 GCCA
63497780 TGCTGAAATC
Statistics
Matches: 373, Mismatches: 62, Indels: 106
0.69 0.11 0.20
Matches are distributed among these distances:
40 12 0.03
42 14 0.04
43 78 0.21
44 189 0.51
45 44 0.12
46 24 0.06
48 12 0.03
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (44 bp):
GCCAAATCAGCTATCTTCAACTTGTTCCCTATAAACACAAGGAT
Found at i:63497427 original size:88 final size:88
Alignment explanation
Indices: 63497278--63497867 Score: 879
Period size: 88 Copynumber: 6.7 Consensus size: 88
63497268 ATTTGTTCCT
* *
63497278 TGTAAGCACAAGG-ATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCAT
1 TGTAAGCAC-AGGAATGTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGATGCCAT
63497342 GCTAAAATCTTCGATCTGCTTCAC
65 GCTAAAATCTTCGATCTGCTTCAC
63497366 TGTAAGCACAGGAATGTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGATGCCATG
1 TGTAAGCACAGGAATGTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGATGCCATG
63497431 CTAAAATCTTCGATCTGCTTCAC
66 CTAAAATCTTCGATCTGCTTCAC
63497454 TGTAAGCACAGGAATGTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGATGCCATG
1 TGTAAGCACAGGAATGTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGATGCCATG
63497519 CTAAAATCTTCGATCTGCTTCAC
66 CTAAAATCTTCGATCTGCTTCAC
63497542 TGTAAGCACAGGAATGTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGATGCCATG
1 TGTAAGCACAGGAATGTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGATGCCATG
63497607 CTAAAATCTTCGATCTGCTTCAC
66 CTAAAATCTTCGATCTGCTTCAC
63497630 TGTAAGCACAGGAATGTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGATGCCAAA
1 TGTAAGCACAGGAATGTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGATGCC--A
*** * * *
63497695 T-CTGCTATATTC-AACTTG-TTCCC
64 TGCTAAAATCTTCGATC-TGCTTCAC
* * * ** * *
63497718 TATAAACACA-GAGATG-C-CATGCTGAAATCTTCAACTTGTTCCCTATAAACATAGGGATGCCA
1 TGTAAGCACAGGA-ATGTCAAAT-CTGCTATCTTCAATTTGTTCCCTATAAACACAGGGATGCCA
*
63497780 TGCTGAAATCTTCGATCTGCTTCAC
64 TGCTAAAATCTTCGATCTGCTTCAC
* * * ** *
63497805 TGTAAGCACAAGAGTGTCAGATCTGCTATCTTTGATTTGTTCCCTATAAATACAGGGATGCCA
1 TGTAAGCACAGGAATGTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGATGCCA
63497868 AATCTTGTTT
Statistics
Matches: 459, Mismatches: 31, Indels: 24
0.89 0.06 0.05
Matches are distributed among these distances:
85 2 0.00
86 12 0.03
87 58 0.13
88 374 0.81
89 11 0.02
90 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (88 bp):
TGTAAGCACAGGAATGTCAAATCTGCTATCTTCAATTTGTTCCCTATAAACACAGGGATGCCATG
CTAAAATCTTCGATCTGCTTCAC
Found at i:63498580 original size:16 final size:17
Alignment explanation
Indices: 63498550--63498596 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
63498540 TTGGACTCTC
63498550 TATTTTTCT--TTTTTA
1 TATTTTTCTCATTTTTA
63498565 -ATTTTTCTCATTTTTA
1 TATTTTTCTCATTTTTA
*
63498581 TTTTTTTCTCATTTTT
1 TATTTTTCTCATTTTT
63498597 TTCTTTTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 8 0.29
16 6 0.21
17 14 0.50
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.77
Consensus pattern (17 bp):
TATTTTTCTCATTTTTA
Found at i:63498611 original size:16 final size:16
Alignment explanation
Indices: 63498566--63498617 Score: 70
Period size: 17 Copynumber: 3.2 Consensus size: 16
63498556 TCTTTTTTAA
63498566 TTTTTCTCATTTTTATT
1 TTTTTCTCATTTTT-TT
63498583 TTTTTCTCATTTTTTT
1 TTTTTCTCATTTTTTT
*
63498599 CTTTTTGTC-TTTTTTT
1 -TTTTTCTCATTTTTTT
63498615 TTT
1 TTT
63498618 GAAATAGAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
15 3 0.09
16 9 0.27
17 21 0.64
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.81
Consensus pattern (16 bp):
TTTTTCTCATTTTTTT
Found at i:63504843 original size:19 final size:19
Alignment explanation
Indices: 63504802--63504855 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
63504792 ATTACAAGAT
*
63504802 CATATCTAAGATTG--TAT
1 CATATCTAAGATTGCATAC
63504819 CATATCTAAGATTGCATAC
1 CATATCTAAGATTGCATAC
63504838 CATATCTAAGATTGCATA
1 CATATCTAAGATTGCATA
63504856 TCCTTAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
17 14 0.41
19 20 0.59
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (19 bp):
CATATCTAAGATTGCATAC
Found at i:63506813 original size:44 final size:44
Alignment explanation
Indices: 63506723--63507190 Score: 518
Period size: 44 Copynumber: 10.5 Consensus size: 44
63506713 TCAGGAATGT
* * * * *
63506723 CAAATCTGCTATCTTTGATCTGCTCTCTGAAAATGCGGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
* * * * *
63506767 CAAACCTACTATATTCGATCTGCTCTTTGACAATATAGAGACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
** * * *
63506811 CAAATCTATTATCTTCGATCTGCTCTCTGAAAATTCAGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
* *
63506855 CAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGATGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
*
63506899 CAAATCTGGC-ATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTAATGC
1 CAAATCT-GCTATCTTCGATCTGCTCTCTGACAATAC--AGA-G----A-C----GC
* *
63506955 CAAATTTGCTATCTTCGATCTACTCTCTGACAATACAGAGACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
*
63506999 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAAACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
* * *
63507043 CGAATCTACTATCTTCGATCTGCTCTCTAACAATACAGAGACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
*
63507087 CAAATCTG-TCATCTTCGATCTGCTCTCTGAC---A-A-AGATGC
1 CAAATCTGCT-ATCTTCGATCTGCTCTCTGACAATACAGAGACGC
*
63507126 CAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGACGC
1 CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
*
63507170 CAAATATGCTATCTTCGATCT
1 CAAATCTGCTATCTTCGATCT
63507191 ACATCGTCCC
Statistics
Matches: 361, Mismatches: 42, Indels: 42
0.81 0.09 0.09
Matches are distributed among these distances:
39 33 0.09
40 2 0.01
41 1 0.00
42 1 0.00
43 2 0.01
44 275 0.76
45 2 0.01
46 3 0.01
47 1 0.00
48 1 0.00
49 1 0.00
51 1 0.00
53 1 0.00
54 3 0.01
55 2 0.01
56 32 0.09
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (44 bp):
CAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACGC
Found at i:63506969 original size:56 final size:56
Alignment explanation
Indices: 63506895--63507005 Score: 170
Period size: 56 Copynumber: 2.0 Consensus size: 56
63506885 CAATACAGAG
* * *
63506895 ATGCCAAATCTGGCATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTA
1 ATGCCAAATCTGGCATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTA
*
63506951 ATGCCAAAT-TTGCTATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCT
1 ATGCCAAATCTGGC-ATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCT
63507006 GCTATCTTCG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
55 3 0.06
56 47 0.94
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (56 bp):
ATGCCAAATCTGGCATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTA
Found at i:63507069 original size:144 final size:133
Alignment explanation
Indices: 63506953--63507190 Score: 355
Period size: 127 Copynumber: 1.8 Consensus size: 133
63506943 CAAATCTAAT
* * * *
63506953 GCCAAATTTG-CTATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
1 GCCAAATCTGTCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTTGA
* * *
63507017 TCTGCTCTCTGACAATACAGAAACGCCGAATCTACTATCTTCGATCTGCTCTCTAACAATACAGA
66 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTAACAATACAGA
63507082 GAC
131 GAC
63507085 GCCAAATCTGTC-ATCTTCGATCTGCTCTCTGAC---A-A-AGATGCCAAATCTGCTATCTTTGA
1 GCCAAATCTGTCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTTGA
*
63507144 TCTGCTCTCTGACAATACAGAGACGCCAAATATGCTATCTTCGATCT
66 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGATCT
63507191 ACATCGTCCC
Statistics
Matches: 97, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
127 65 0.67
128 1 0.01
129 1 0.01
132 29 0.30
133 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.29
Consensus pattern (133 bp):
GCCAAATCTGTCTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTTGA
TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTAACAATACAGA
GAC
Found at i:63507080 original size:188 final size:188
Alignment explanation
Indices: 63506775--63507119 Score: 537
Period size: 188 Copynumber: 1.8 Consensus size: 188
63506765 GCCAAACCTA
* * * *
63506775 CTATATTCGATCTGCTCTTTGACAATATAGAGACGCCAAATCTATTATCTTCGATCTGCTCTCTG
1 CTATATTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTG
* * * * * * *
63506840 AAAATTCAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATC
66 AAAATACAGAAACGCCAAATCTACTATCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATC
*
63506905 TGGCATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTAATGCCAAATTTG
131 TGGCATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTAATGCCAAATTTG
* *
63506963 CTATCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTCTG
1 CTATATTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTG
* *
63507028 ACAATACAGAAACGCCGAATCTACTATCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATC
66 AAAATACAGAAACGCCAAATCTACTATCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATC
*
63507093 TGTCATCTTCGATCTGCTCTCTGACAA
131 TGGCATCTTCGATCTGCTCTCTGACAA
63507120 AGATGCCAAA
Statistics
Matches: 140, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
188 140 1.00
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.30
Consensus pattern (188 bp):
CTATATTCGATCTACTCTCTGACAATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTG
AAAATACAGAAACGCCAAATCTACTATCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATC
TGGCATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTAATGCCAAATTTG
Found at i:63511595 original size:35 final size:35
Alignment explanation
Indices: 63511543--63511610 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
63511533 TGCTCATGTC
63511543 ATTGATATCCAGAGGCCTGCGGGGTACGAAAGAGT
1 ATTGATATCCAGAGGCCTGCGGGGTACGAAAGAGT
* *
63511578 ATTGATATCTAGGGGCCTGCGGGGTACGAAAGA
1 ATTGATATCCAGAGGCCTGCGGGGTACGAAAGA
63511611 ATGTACAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.28, C:0.16, G:0.35, T:0.21
Consensus pattern (35 bp):
ATTGATATCCAGAGGCCTGCGGGGTACGAAAGAGT
Found at i:63519811 original size:56 final size:57
Alignment explanation
Indices: 63519745--63519858 Score: 196
Period size: 56 Copynumber: 2.0 Consensus size: 57
63519735 GTGTTGAACA
*
63519745 GAGATAATAAACTATAAA-AAATATGTAGCTCAATCACCTTTTTTCAGAAAATAAACC
1 GAGATAATAAACTATAAACAAATATGTAGCTAAATCACC-TTTTTCAGAAAATAAACC
63519802 GAGAT-ATAAACTATAAACAAATATGTAGCTAAATCACCTTTTTCAGAAAATAAACC
1 GAGATAATAAACTATAAACAAATATGTAGCTAAATCACCTTTTTCAGAAAATAAACC
63519858 G
1 G
63519859 CTCTTATTTC
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
56 31 0.56
57 24 0.44
ACGTcount: A:0.47, C:0.16, G:0.10, T:0.27
Consensus pattern (57 bp):
GAGATAATAAACTATAAACAAATATGTAGCTAAATCACCTTTTTCAGAAAATAAACC
Found at i:63524047 original size:68 final size:67
Alignment explanation
Indices: 63523975--63524124 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
63523965 CATCATGTGT
* * * *
63523975 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
63524037 ATGTAG
62 ATGTAG
** * *
63524043 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
63524108 AG
66 AG
63524110 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
63524125 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:63524080 original size:64 final size:64
Alignment explanation
Indices: 63523999--63524181 Score: 192
Period size: 67 Copynumber: 2.8 Consensus size: 64
63523989 AGACATTATG
* *
63523999 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
63524063 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
63524128 AA
63 AA
* * * *
63524130 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAG
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAG
63524182 TCGAACTATA
Statistics
Matches: 97, Mismatches: 17, Indels: 11
0.78 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63526687 original size:24 final size:24
Alignment explanation
Indices: 63526650--63526701 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
63526640 GATACTATTT
*
63526650 AATTATTTTGTTTTTTATTTATATA
1 AATTATTTTATTTTTTATTTATA-A
63526675 AATT-TTTTATTTTTTATTTATAA
1 AATTATTTTATTTTTTATTTATAA
63526698 AATT
1 AATT
63526702 GGCATAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 5 0.19
24 17 0.65
25 4 0.15
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (24 bp):
AATTATTTTATTTTTTATTTATAA
Found at i:63528263 original size:5 final size:5
Alignment explanation
Indices: 63528245--63528305 Score: 56
Period size: 5 Copynumber: 12.4 Consensus size: 5
63528235 TTTACTATCC
* *
63528245 ATTAT ATTATT ATTAT ATT-T -TTAT ATTAT A-TCT ATTCT ATTAT ATTTAT
1 ATTAT ATTA-T ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TTAT
*
63528294 ATTTT ATTAT AT
1 ATTAT ATTAT AT
63528306 GGTATACATT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
3 2 0.04
4 5 0.11
5 30 0.64
6 10 0.21
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (5 bp):
ATTAT
Found at i:63531706 original size:22 final size:22
Alignment explanation
Indices: 63531676--63531732 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
63531666 ATTGAACATG
*
63531676 TGCA-TGTGCGAACCTCTTCCA
1 TGCATTGTGCGAACCTCATCCA
* *
63531697 TGCATTGTGCAAACCTCATCTA
1 TGCATTGTGCGAACCTCATCCA
**
63531719 TGTGTTGTGCGAAC
1 TGCATTGTGCGAAC
63531733 TCCTAGCATG
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
21 4 0.14
22 25 0.86
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (22 bp):
TGCATTGTGCGAACCTCATCCA
Found at i:63531807 original size:50 final size:50
Alignment explanation
Indices: 63531750--63531845 Score: 183
Period size: 50 Copynumber: 1.9 Consensus size: 50
63531740 ATGAATCTAA
63531750 GTCCGTGTGTTTTTACATGCTATGCGAACCTTAAGTAAAATGTACATATG
1 GTCCGTGTGTTTTTACATGCTATGCGAACCTTAAGTAAAATGTACATATG
*
63531800 GTCCGTGTGTTTTTACATGCTATGCGAACCTTGAGTAAAATGTACA
1 GTCCGTGTGTTTTTACATGCTATGCGAACCTTAAGTAAAATGTACA
63531846 CATGCATCCA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (50 bp):
GTCCGTGTGTTTTTACATGCTATGCGAACCTTAAGTAAAATGTACATATG
Found at i:63539262 original size:49 final size:50
Alignment explanation
Indices: 63539196--63539341 Score: 195
Period size: 51 Copynumber: 2.9 Consensus size: 50
63539186 GTAGCCAAAC
* * *
63539196 TATCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCAA-T
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAGT
* * *
63539245 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAAGT
* * *
63539296 TATCGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGTGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
63539342 TCGCTACATA
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
49 39 0.47
50 4 0.05
51 40 0.48
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (50 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAGT
Found at i:63542804 original size:133 final size:133
Alignment explanation
Indices: 63542566--63542830 Score: 494
Period size: 133 Copynumber: 2.0 Consensus size: 133
63542556 ATGTAATATC
*
63542566 CTGATTTTGGGCCTAGTCGGAATAGTGGTTTCGTGACCACAAAATCTGAGATATAAATAATTATT
1 CTGATTTTGGGCCTAGTCGGAATAGTGGTTTCGTGACCACAAAATCCGAGATATAAATAATTATT
*
63542631 TTATGATTATTTTAAGGTCTATGATACGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCT
66 TTATGATTATTTTAAGGTCTATGATACGATTGCATGATTGTGTAAAAATTTCGTGATGAAATTCT
63542696 ATG
131 ATG
63542699 CTGATTTTGGGCCTAGTCGGAATAGTGGTTTCGTGACCACAAAATCCGAGATATAAATAATTATT
1 CTGATTTTGGGCCTAGTCGGAATAGTGGTTTCGTGACCACAAAATCCGAGATATAAATAATTATT
* *
63542764 TTATGATTATTTTAAGGTCTATGATATGATTTCATGATTGTGTAAAAATTTCGTGATGAAATTCT
66 TTATGATTATTTTAAGGTCTATGATACGATTGCATGATTGTGTAAAAATTTCGTGATGAAATTCT
63542829 AT
131 AT
63542831 TCCTAAAGTG
Statistics
Matches: 128, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
133 128 1.00
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.39
Consensus pattern (133 bp):
CTGATTTTGGGCCTAGTCGGAATAGTGGTTTCGTGACCACAAAATCCGAGATATAAATAATTATT
TTATGATTATTTTAAGGTCTATGATACGATTGCATGATTGTGTAAAAATTTCGTGATGAAATTCT
ATG
Found at i:63546266 original size:15 final size:15
Alignment explanation
Indices: 63546228--63546271 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
63546218 CATAGTATCG
* *
63546228 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTC
63546243 TAT-TCTGGATTTCTC
1 TATCT-TGGATTTCTC
63546258 TATCTTGGATTTCT
1 TATCTTGGATTTCT
63546272 TTATTCGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 1 0.04
15 23 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:63553840 original size:46 final size:45
Alignment explanation
Indices: 63553680--63553918 Score: 149
Period size: 50 Copynumber: 5.0 Consensus size: 45
63553670 TAAAGTGTCG
* * * * *
63553680 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGCCG
1 ATGCCATG-TCCAGACATGGTCTTACACT-G-ACACATATCGAGGCCA
* * * * **
63553728 ATGCCATGTCCCAGGCATAGTCTTACACT-AGCTCTTATAAACCGATACCA
1 ATGCCATGT-CCAGACATGGTCTTACACTGA-CAC--AT--ATCGAGGCCA
*
63553778 ATGCCATGTCCTAGACATGGTCTTACACTGACACATATCGAGGTCA
1 ATGCCATGTCC-AGACATGGTCTTACACTGACACATATCGAGGCCA
* * * * * *
63553824 ATGCCATGTACCAGACATGGCCTTACACCGGCTCTCATAAACCG-GTGCCG
1 ATGCCATGT-CCAGACATGGTCTTACA-CTG-ACACAT--ATCGAG-GCCA
63553874 ATGCCATGTCCCAGACATGGTCTTACACTGACACATATCGAGGCC
1 ATGCCATGT-CCAGACATGGTCTTACACTGACACATATCGAGGCC
63553919 GATTGTACTC
Statistics
Matches: 146, Mismatches: 30, Indels: 32
0.70 0.14 0.15
Matches are distributed among these distances:
46 37 0.25
47 6 0.04
48 36 0.25
49 5 0.03
50 61 0.42
51 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (45 bp):
ATGCCATGTCCAGACATGGTCTTACACTGACACATATCGAGGCCA
Found at i:63553858 original size:96 final size:95
Alignment explanation
Indices: 63553680--63553918 Score: 289
Period size: 96 Copynumber: 2.5 Consensus size: 95
63553670 TAAAGTGTCG
* * * * * * *
63553680 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGCCGATGCCATGTCCCAGGCA
1 ATGCCATG-TCCAGACATGGTCTTACACT-G-ACACATATCGAGGCCAATGCCATGTACCAGACA
* * *
63553745 TAGTCTTACACTAGCTCTTATAAACCGATACCA
63 TAGCCTTACACCAGCTCTCATAAACCGATACCA
* *
63553778 ATGCCATGTCCTAGACATGGTCTTACACTGACACATATCGAGGTCAATGCCATGTACCAGACATG
1 ATGCCATGTCC-AGACATGGTCTTACACTGACACATATCGAGGCCAATGCCATGTACCAGACATA
* * * *
63553843 GCCTTACACCGGCTCTCATAAACCGGTGCCG
65 GCCTTACACCAGCTCTCATAAACCGATACCA
63553874 ATGCCATGTCCCAGACATGGTCTTACACTGACACATATCGAGGCC
1 ATGCCATGT-CCAGACATGGTCTTACACTGACACATATCGAGGCC
63553919 GATTGTACTC
Statistics
Matches: 122, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
96 92 0.75
97 6 0.05
98 24 0.20
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (95 bp):
ATGCCATGTCCAGACATGGTCTTACACTGACACATATCGAGGCCAATGCCATGTACCAGACATAG
CCTTACACCAGCTCTCATAAACCGATACCA
Found at i:63553889 original size:50 final size:50
Alignment explanation
Indices: 63553728--63553901 Score: 160
Period size: 50 Copynumber: 3.6 Consensus size: 50
63553718 ATTGAGGCCG
* * * * * *
63553728 ATGCCATGTCCCAGGCATAGTCTTACACTAGCTCTTATAAACCGATACCA
1 ATGCCATGTCCCAGACATGGTCTTACACCAGCTCTCATAAACCGGTGCCA
* * * * * *
63553778 ATGCCATGTCCTAGACATGGTCTTACA-CTG-ACACAT--ATCGAG-GTCA
1 ATGCCATGTCCCAGACATGGTCTTACACCAGCTCTCATAAACCG-GTGCCA
* * * *
63553824 ATGCCATGTACCAGACATGGCCTTACACCGGCTCTCATAAACCGGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACCAGCTCTCATAAACCGGTGCCA
63553874 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
63553902 TGACACATAT
Statistics
Matches: 95, Mismatches: 23, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
46 29 0.31
47 2 0.02
48 7 0.07
49 2 0.02
50 55 0.58
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACCAGCTCTCATAAACCGGTGCCA
Found at i:63556649 original size:17 final size:16
Alignment explanation
Indices: 63556610--63556645 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
63556600 GCCAAGTTGG
63556610 AAGT-AAAAAGAACTA
1 AAGTGAAAAAGAACTA
*
63556625 AAGTGAAAAAGAATTA
1 AAGTGAAAAAGAACTA
63556641 AAGTG
1 AAGTG
63556646 GAAAGTGGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.61, C:0.03, G:0.19, T:0.17
Consensus pattern (16 bp):
AAGTGAAAAAGAACTA
Found at i:63561949 original size:13 final size:13
Alignment explanation
Indices: 63561931--63561955 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63561921 TAGGTAGCTG
63561931 TTGTTATTAAATT
1 TTGTTATTAAATT
63561944 TTGTTATTAAAT
1 TTGTTATTAAAT
63561956 CTCGATTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (13 bp):
TTGTTATTAAATT
Found at i:63577317 original size:42 final size:41
Alignment explanation
Indices: 63577207--63577365 Score: 133
Period size: 43 Copynumber: 3.8 Consensus size: 41
63577197 AACAAGTACA
** * * *
63577207 ATGCCGACATCCCTGACGTGGTCTTACATGTAATTCAATATCG
1 ATGCCGATGTCCCAGACATGGTCTTACATG-AAATCAATA-CG
** *
63577250 ATGCCTCTGTCCCAGATA-GGTTCTTACATGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGG-TCTTACATGAAATCA-ATACG
*
63577292 ATGCCGATGTCCCAGACATGGTCTTATACATAAATATCAAT-CG
1 ATGCCGATGTCCCAGACATGGTC-T-TACATGAA-ATCAATACG
* * *
63577335 AGGCCTATGTCCCAGACACGGTCTTACATGA
1 ATGCCGATGTCCCAGACATGGTCTTACATGA
63577366 TATCTCAGAT
Statistics
Matches: 94, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
41 6 0.06
42 27 0.29
43 48 0.51
44 9 0.10
45 4 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (41 bp):
ATGCCGATGTCCCAGACATGGTCTTACATGAAATCAATACG
Found at i:63600499 original size:20 final size:20
Alignment explanation
Indices: 63600448--63600488 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
63600438 CAGGCCAGGG
*
63600448 ACACGGGCGTGTCCCAAAGC
1 ACACAGGCGTGTCCCAAAGC
63600468 ACACAGGCGTGTCCCAAAGC
1 ACACAGGCGTGTCCCAAAGC
63600488 A
1 A
63600489 TACGAGCGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.34, G:0.27, T:0.10
Consensus pattern (20 bp):
ACACAGGCGTGTCCCAAAGC
Found at i:63602327 original size:27 final size:27
Alignment explanation
Indices: 63602297--63602354 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
63602287 CTATTGGTAA
* * *
63602297 ACACCAACTCATCAGACCTTCTGGCAT
1 ACACCAACTCACCAGACCTACTAGCAT
*
63602324 ACACCAACTTACCAGACCTACTAGCAT
1 ACACCAACTCACCAGACCTACTAGCAT
63602351 ACAC
1 ACAC
63602355 TAGCTAGCCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.38, G:0.09, T:0.19
Consensus pattern (27 bp):
ACACCAACTCACCAGACCTACTAGCAT
Found at i:63618302 original size:18 final size:19
Alignment explanation
Indices: 63618279--63618314 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
63618269 AACTTGGCAC
*
63618279 CATAA-TCATTTAATTTAA
1 CATAATTCAATTAATTTAA
63618297 CATAATTCAATTAATTTA
1 CATAATTCAATTAATTTA
63618315 CTAAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (19 bp):
CATAATTCAATTAATTTAA
Found at i:63634313 original size:29 final size:29
Alignment explanation
Indices: 63634281--63634360 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
63634271 AAGCTGGGGA
* **
63634281 GCTCCATCTAGCGAGCATGAAGATGGTGG
1 GCTCCATCTGGCGAGCATGAAGATGGCAG
* * *
63634310 GCTCCATCCGGTGAACATGAAGATGGCAG
1 GCTCCATCTGGCGAGCATGAAGATGGCAG
*
63634339 ACTCCATCTGGCGAGTCATGAA
1 GCTCCATCTGGCGAG-CATGAA
63634361 CTAGGTCGCG
Statistics
Matches: 40, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
29 34 0.85
30 6 0.15
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (29 bp):
GCTCCATCTGGCGAGCATGAAGATGGCAG
Found at i:63638751 original size:6 final size:6
Alignment explanation
Indices: 63638740--63638764 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
63638730 TACCAACATG
63638740 TTTCTT TTTCTT TTTCTT TTTCTT T
1 TTTCTT TTTCTT TTTCTT TTTCTT T
63638765 AAAAAGTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTCTT
Found at i:63639432 original size:20 final size:20
Alignment explanation
Indices: 63639386--63639434 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
63639376 TTAACCATCG
63639386 ATCTGGTATTGATATATTTT
1 ATCTGGTATTGATATATTTT
*
63639406 ATTTGGTATTGATA-ATTTT
1 ATCTGGTATTGATATATTTT
63639425 ATCCTGGTAT
1 AT-CTGGTAT
63639435 CGATTTTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 7 0.27
20 19 0.73
ACGTcount: A:0.24, C:0.06, G:0.16, T:0.53
Consensus pattern (20 bp):
ATCTGGTATTGATATATTTT
Found at i:63640856 original size:14 final size:16
Alignment explanation
Indices: 63640827--63640860 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
63640817 AATGAAGGGA
63640827 TTGAGTAAGAAAAAAG
1 TTGAGTAAGAAAAAAG
*
63640843 TTGAG-AAGAAAAAGG
1 TTGAGTAAGAAAAAAG
63640858 TTG
1 TTG
63640861 GTGTTACTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (16 bp):
TTGAGTAAGAAAAAAG
Found at i:63651087 original size:27 final size:27
Alignment explanation
Indices: 63651039--63651143 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
63651029 GCGAGGATGC
* *
63651039 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
63651066 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
63651092 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
63651119 CAGATAATTGTGGCATAACCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
63651144 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
26 8 0.11
27 59 0.84
28 3 0.04
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:63651239 original size:87 final size:87
Alignment explanation
Indices: 63651136--63651309 Score: 348
Period size: 87 Copynumber: 2.0 Consensus size: 87
63651126 TTGTGGCATA
63651136 ACCACCAGGACGCTTCCTCCATAATATAACCCATGTCCCCATGCAACAGATATATAATCATGACA
1 ACCACCAGGACGCTTCCTCCATAATATAACCCATGTCCCCATGCAACAGATATATAATCATGACA
63651201 TACATCATACAGAATCAGATCG
66 TACATCATACAGAATCAGATCG
63651223 ACCACCAGGACGCTTCCTCCATAATATAACCCATGTCCCCATGCAACAGATATATAATCATGACA
1 ACCACCAGGACGCTTCCTCCATAATATAACCCATGTCCCCATGCAACAGATATATAATCATGACA
63651288 TACATCATACAGAATCAGATCG
66 TACATCATACAGAATCAGATCG
63651310 TCATGCTTTT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.37, C:0.30, G:0.11, T:0.22
Consensus pattern (87 bp):
ACCACCAGGACGCTTCCTCCATAATATAACCCATGTCCCCATGCAACAGATATATAATCATGACA
TACATCATACAGAATCAGATCG
Found at i:63652826 original size:26 final size:26
Alignment explanation
Indices: 63652795--63652902 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
63652785 TGAAATGCCC
*
63652795 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
63652821 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
63652847 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
63652873 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
63652899 ATCA
1 ATCA
63652903 AATTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:63657764 original size:68 final size:68
Alignment explanation
Indices: 63657627--63657783 Score: 192
Period size: 68 Copynumber: 2.3 Consensus size: 68
63657617 TTAATTGTGA
* * * * *
63657627 AATC-AACAGATTCGGACAGGTACATTTACTAAATAAAACAGCATATATGGTAGTGCATCGAACA
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGATAGTGCATCGAACA
63657691 ATG
66 ATG
* * * *
63657694 AATTTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGAT-GATGCTTTGAAT
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGATAG-TGCATCGAAC
*
63657758 AGTG
65 AATG
*
63657762 AATCTAACACATTCGAACAGCT
1 AATCTAACACATTCGGACAGCT
63657784 TAATTTTAAG
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
67 4 0.05
68 72 0.95
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.25
Consensus pattern (68 bp):
AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGATAGTGCATCGAACA
ATG
Found at i:63660173 original size:29 final size:30
Alignment explanation
Indices: 63660102--63660238 Score: 117
Period size: 29 Copynumber: 4.7 Consensus size: 30
63660092 GTGCCCACTG
**
63660102 ACCGATCTCGCACACATAGTG-CTCGGTTGA
1 ACCGATCTCGCACACATAGTGCCTCAATT-A
* *
63660132 A--GAACTCGCACACACAGTGCCTCAATT-
1 ACCGATCTCGCACACATAGTGCCTCAATTA
**
63660159 ACCGATCTCGCACACATAGTG-CTCGGTTA
1 ACCGATCTCGCACACATAGTGCCTCAATTA
** *
63660188 AAGGAAT-TCGCACACACAGTGCCTCAATT-
1 ACCG-ATCTCGCACACATAGTGCCTCAATTA
*
63660217 ACCGATCTCACACACATAGTGC
1 ACCGATCTCGCACACATAGTGC
63660239 TCGGTTAAAG
Statistics
Matches: 83, Mismatches: 17, Indels: 15
0.72 0.15 0.13
Matches are distributed among these distances:
27 1 0.01
28 23 0.28
29 51 0.61
30 8 0.10
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.21
Consensus pattern (30 bp):
ACCGATCTCGCACACATAGTGCCTCAATTA
Found at i:63660222 original size:58 final size:58
Alignment explanation
Indices: 63660102--63660270 Score: 295
Period size: 58 Copynumber: 2.9 Consensus size: 58
63660092 GTGCCCACTG
* *
63660102 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
63660159 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
* *
63660217 ACCGATCTCACACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
63660271 TAATCATTCG
Statistics
Matches: 107, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
57 30 0.28
58 77 0.72
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
Found at i:63660259 original size:29 final size:29
Alignment explanation
Indices: 63660109--63660267 Score: 112
Period size: 29 Copynumber: 5.5 Consensus size: 29
63660099 CTGACCGATC
* * *
63660109 TCGCACACATAGTGCTCGGTTGAA-GAAC
1 TCGCACACACAGTGCTCGGTTAAAGGAAT
** **
63660137 TCGCACACACAGTGCCTCAATT-ACCG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
*
63660165 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
** **
63660195 TCGCACACACAGTGCCTCAATT-ACCG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
* *
63660223 CTCACACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
*
63660253 TTGCACACACAGTGC
1 TCGCACACACAGTGC
63660268 CTCTAATCAT
Statistics
Matches: 98, Mismatches: 24, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
28 27 0.28
29 62 0.63
30 9 0.09
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (29 bp):
TCGCACACACAGTGCTCGGTTAAAGGAAT
Found at i:63660500 original size:43 final size:43
Alignment explanation
Indices: 63660439--63660547 Score: 173
Period size: 43 Copynumber: 2.5 Consensus size: 43
63660429 CGGCATTATG
* *
63660439 CTAGGCACGAAGACCCGAATACACATCACTGGCACAAAGCCTA
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTA
* *
63660482 CTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTG
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTA
*
63660525 CTAGGCACAAAGGCCCGAATACA
1 CTAGGCACGAAGGCCCGAATACA
63660548 TATTACCGAG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.35, C:0.33, G:0.22, T:0.10
Consensus pattern (43 bp):
CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTA
Found at i:63663354 original size:68 final size:68
Alignment explanation
Indices: 63663217--63663373 Score: 183
Period size: 68 Copynumber: 2.3 Consensus size: 68
63663207 TTAATTGTGA
* * * * *
63663217 AATC-AACAGATTCGGATAGCTACATTTACTAAATAAAACAACATATATGGTAGTGCATCGAACA
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAACATAAATGATAGTGCATCGAACA
63663281 ATG
66 ATG
* * * * *
63663284 AATTTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGAT-GATGCTTTGAAT
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAACATAAATGATAG-TGCATCGAAC
*
63663348 AGTG
65 AATG
*
63663352 AATCTAACACATTCGAACAGCT
1 AATCTAACACATTCGGACAGCT
63663374 TAATTTTAAG
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
67 4 0.05
68 71 0.95
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (68 bp):
AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAACATAAATGATAGTGCATCGAACA
ATG
Found at i:63664578 original size:26 final size:26
Alignment explanation
Indices: 63664549--63664656 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
63664539 TGATACAAAT
63664549 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
63664575 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
63664601 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
63664627 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
63664653 TGAT
1 TGAT
63664657 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:63670234 original size:57 final size:58
Alignment explanation
Indices: 63670161--63670270 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 58
63670151 TGCCCACTGG
* * *
63670161 CCGATCTCGCATACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATTA
1 CCGATCTCGCACACATAGTGCTCAGTTAAAGGAACTCGCACACACAGTGCCTCAATTA
* * *
63670218 CCGATCTCGCACACATAGTGCTCAGTTAAAGGAATTTGCATACACAGTGCCTC
1 CCGATCTCGCACACATAGTGCTCAGTTAAAGGAACTCGCACACACAGTGCCTC
63670271 TAATCATTCG
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 27 0.59
58 19 0.41
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (58 bp):
CCGATCTCGCACACATAGTGCTCAGTTAAAGGAACTCGCACACACAGTGCCTCAATTA
Found at i:63670537 original size:43 final size:42
Alignment explanation
Indices: 63670437--63670554 Score: 182
Period size: 43 Copynumber: 2.8 Consensus size: 42
63670427 ACCGGCATTA
* * *
63670437 TGCTAGGCACGAAGACCCGAATACACATCACTGGACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGGACAAAGCC
*
63670479 TACTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGG-ACAAAGCC
*
63670522 TGCTAGGCACAAAGGCCCGAATACACATCACCG
1 TGCTAGGCACGAAGGCCCGAATACACATCACCG
63670555 AGTTTCATGC
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 31 0.45
43 38 0.55
ACGTcount: A:0.34, C:0.33, G:0.22, T:0.11
Consensus pattern (42 bp):
TGCTAGGCACGAAGGCCCGAATACACATCACCGGACAAAGCC
Found at i:63673203 original size:36 final size:36
Alignment explanation
Indices: 63673156--63673226 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
63673146 CAAGAATTTC
*
63673156 TTAGTACTTACCTCATTATAGCCATCACCTAAGCTT
1 TTAGTACTTACCTCATTATAGCCAACACCTAAGCTT
63673192 TTAGTACTTACCTCATTATAGCCAACACCTAAGCT
1 TTAGTACTTACCTCATTATAGCCAACACCTAAGCT
63673227 GAAAATTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (36 bp):
TTAGTACTTACCTCATTATAGCCAACACCTAAGCTT
Found at i:63680840 original size:56 final size:56
Alignment explanation
Indices: 63680773--63681004 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
63680763 TATTAGTTTA
*
63680773 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
*
63680829 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACTTGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
63680885 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
63680941 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
63680997 TTGCCCAT
1 TTGCCCAT
63681005 CATCCCTTGT
Statistics
Matches: 173, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 173 1.00
ACGTcount: A:0.22, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:63687674 original size:79 final size:81
Alignment explanation
Indices: 63687506--63687690 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
63687496 GCTACTCGTT
* *
63687506 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
63687570 GATTTAGTAACTCGCAC
65 GATATAGTAACTAGCAC
* * **
63687587 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
63687649 GATATGGTCACTTAGCA-
65 GATATAGTAAC-TAGCAC
*
63687666 TAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
63687691 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 25 0.28
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCAC
Found at i:63687690 original size:40 final size:40
Alignment explanation
Indices: 63687487--63687690 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
63687477 CAGAATTTAA
** *
63687487 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63687527 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63687567 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63687606 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
63687646 CCGGATATGGTCACTTAGCATAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
63687686 CCGGA
1 CCGGA
63687691 CATCATTCGA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:63688833 original size:39 final size:39
Alignment explanation
Indices: 63688776--63688853 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
63688766 CAACTAAAAT
*
63688776 CATGCATGAATCTTATGGCACAACCTCAAACATACCTTA
1 CATGCATGAATCTCATGGCACAACCTCAAACATACCTTA
63688815 CATGCATGAATCTCATGGCACAACCTCAAACATACCTTA
1 CATGCATGAATCTCATGGCACAACCTCAAACATACCTTA
63688854 ATCTAGATAC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.36, C:0.29, G:0.10, T:0.24
Consensus pattern (39 bp):
CATGCATGAATCTCATGGCACAACCTCAAACATACCTTA
Found at i:63690037 original size:27 final size:27
Alignment explanation
Indices: 63689995--63690073 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
63689985 GTCACTAGAT
63689995 ACAGATAT-TGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
63690021 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAGA
* * *
63690048 TCAAATA-ATTGTGGCATAGCCACCAG
1 ACAGATATA-TGTGGCAGAGCCACCAG
63690074 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
26 9 0.19
27 39 0.81
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAGA
Found at i:63691688 original size:26 final size:26
Alignment explanation
Indices: 63691657--63691764 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
63691647 TGAAATGCCC
*
63691657 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
63691683 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
63691709 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
63691735 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
63691761 ATCA
1 ATCA
63691765 AATTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:63700153 original size:69 final size:69
Alignment explanation
Indices: 63700042--63700317 Score: 552
Period size: 69 Copynumber: 4.0 Consensus size: 69
63700032 TGTGGTCTTA
63700042 CACGAAATCACATAACGAAAACCTATGTTATGACATATGTATCCTAACTATTCCTATGGTGCATA
1 CACGAAATCACATAACGAAAACCTATGTTATGACATATGTATCCTAACTATTCCTATGGTGCATA
63700107 CATG
66 CATG
63700111 CACGAAATCACATAACGAAAACCTATGTTATGACATATGTATCCTAACTATTCCTATGGTGCATA
1 CACGAAATCACATAACGAAAACCTATGTTATGACATATGTATCCTAACTATTCCTATGGTGCATA
63700176 CATG
66 CATG
63700180 CACGAAATCACATAACGAAAACCTATGTTATGACATATGTATCCTAACTATTCCTATGGTGCATA
1 CACGAAATCACATAACGAAAACCTATGTTATGACATATGTATCCTAACTATTCCTATGGTGCATA
63700245 CATG
66 CATG
63700249 CACGAAATCACATAACGAAAACCTATGTTATGACATATGTATCCTAACTATTCCTATGGTGCATA
1 CACGAAATCACATAACGAAAACCTATGTTATGACATATGTATCCTAACTATTCCTATGGTGCATA
63700314 CATG
66 CATG
63700318 GCTTTTCAGA
Statistics
Matches: 207, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 207 1.00
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.29
Consensus pattern (69 bp):
CACGAAATCACATAACGAAAACCTATGTTATGACATATGTATCCTAACTATTCCTATGGTGCATA
CATG
Found at i:63722121 original size:23 final size:23
Alignment explanation
Indices: 63722091--63722135 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
63722081 GAAGCATGTA
63722091 AATGCTTACCCCTCTCTTTTCCT
1 AATGCTTACCCCTCTCTTTTCCT
63722114 AATGCTTACCCCTCTCTTTTCC
1 AATGCTTACCCCTCTCTTTTCC
63722136 CTGTCTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.13, C:0.40, G:0.04, T:0.42
Consensus pattern (23 bp):
AATGCTTACCCCTCTCTTTTCCT
Found at i:63726087 original size:14 final size:13
Alignment explanation
Indices: 63726064--63726095 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
63726054 GGTATATCAA
63726064 AACAATAATTAAG
1 AACAATAATTAAG
63726077 AACACATAATTAAG
1 AACA-ATAATTAAG
63726091 AACAA
1 AACAA
63726096 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:63730476 original size:19 final size:19
Alignment explanation
Indices: 63730452--63730489 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
63730442 AGTTACATGG
63730452 TGTGATGTTATGTGACTAA
1 TGTGATGTTATGTGACTAA
63730471 TGTGATGTTATGTGACTAA
1 TGTGATGTTATGTGACTAA
63730490 CTTGTTGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.42
Consensus pattern (19 bp):
TGTGATGTTATGTGACTAA
Found at i:63731945 original size:15 final size:15
Alignment explanation
Indices: 63731925--63731955 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
63731915 TCCTTTGGCT
63731925 TGCATTGTAACACCC
1 TGCATTGTAACACCC
63731940 TGCATTGTAACACCC
1 TGCATTGTAACACCC
63731955 T
1 T
63731956 ATACCCAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.29
Consensus pattern (15 bp):
TGCATTGTAACACCC
Found at i:63733194 original size:28 final size:28
Alignment explanation
Indices: 63733154--63733231 Score: 72
Period size: 28 Copynumber: 2.8 Consensus size: 28
63733144 CTATTTAAAG
63733154 GTTTAT-GCATTATGGGTTTAGGGATT-AT
1 GTTTATGGC-TTATGGGTTTAGGG-TTGAT
* * *
63733182 GTTTATGGCTTATGGCTTAAGGGTTGGT
1 GTTTATGGCTTATGGGTTTAGGGTTGAT
* *
63733210 GTTTAAGGGTTATGGG-TTAGGG
1 GTTTATGGCTTATGGGTTTAGGG
63733232 GTTAGGGGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
27 7 0.17
28 32 0.78
29 2 0.05
ACGTcount: A:0.18, C:0.04, G:0.36, T:0.42
Consensus pattern (28 bp):
GTTTATGGCTTATGGGTTTAGGGTTGAT
Found at i:63733228 original size:7 final size:7
Alignment explanation
Indices: 63733216--63733286 Score: 70
Period size: 7 Copynumber: 9.9 Consensus size: 7
63733206 TGGTGTTTAA
*
63733216 GGGTTAT
1 GGGTTAG
63733223 GGGTTAG
1 GGGTTAG
63733230 GGGTTAG
1 GGGTTAG
63733237 GGGTTTAG
1 GGG-TTAG
*
63733245 GGGTTAT
1 GGGTTAG
*
63733252 GGGTTAAT
1 GGGTT-AG
*
63733260 GGTTTAG
1 GGGTTAG
*
63733267 GGGTTAA
1 GGGTTAG
*
63733274 GGTTTAG
1 GGGTTAG
63733281 GGGTTA
1 GGGTTA
63733287 TTATTTTGTG
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
7 40 0.75
8 13 0.25
ACGTcount: A:0.17, C:0.00, G:0.46, T:0.37
Consensus pattern (7 bp):
GGGTTAG
Found at i:63733233 original size:28 final size:28
Alignment explanation
Indices: 63733163--63733257 Score: 93
Period size: 28 Copynumber: 3.4 Consensus size: 28
63733153 GGTTTATGCA
* * * *
63733163 TTATGGGTTTAGGGATT-ATGTTTATGGC
1 TTATGGG-TTAGGGGTTGGTGTTTAAGGG
* *
63733191 TTATGGCTTAAGGGTTGGTGTTTAAGGG
1 TTATGGGTTAGGGGTTGGTGTTTAAGGG
* *
63733219 TTATGGGTTAGGGGTTAGGGGTTTAGGGG
1 TTATGGGTTAGGGGTT-GGTGTTTAAGGG
63733248 TTATGGGTTA
1 TTATGGGTTA
63733258 ATGGTTTAGG
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
27 7 0.13
28 28 0.51
29 20 0.36
ACGTcount: A:0.17, C:0.02, G:0.40, T:0.41
Consensus pattern (28 bp):
TTATGGGTTAGGGGTTGGTGTTTAAGGG
Found at i:63733249 original size:22 final size:22
Alignment explanation
Indices: 63733223--63733285 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 22
63733213 TAAGGGTTAT
*
63733223 GGGTTAGGGGTTAGGGGTTTAG
1 GGGTTAAGGGTTAGGGGTTTAG
* **
63733245 GGGTTATGGGTTAATGGTTTAG
1 GGGTTAAGGGTTAGGGGTTTAG
*
63733267 GGGTTAAGGTTTAGGGGTT
1 GGGTTAAGGGTTAGGGGTT
63733286 ATTATTTTGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.37
Consensus pattern (22 bp):
GGGTTAAGGGTTAGGGGTTTAG
Found at i:63733277 original size:14 final size:14
Alignment explanation
Indices: 63733198--63733286 Score: 81
Period size: 14 Copynumber: 6.2 Consensus size: 14
63733188 GGCTTATGGC
*
63733198 TTAAGGGTT-GGTGT
1 TTAAGGGTTAGG-GG
*
63733212 TTAAGGGTTATGGG
1 TTAAGGGTTAGGGG
*
63733226 TTAGGGGTTAGGGG
1 TTAAGGGTTAGGGG
* *
63733240 TTTAGGGGTTATGGG
1 -TTAAGGGTTAGGGG
*
63733255 TTAATGGTTTAGGGG
1 TTAA-GGGTTAGGGG
*
63733270 TTAAGGTTTAGGGG
1 TTAAGGGTTAGGGG
63733284 TTA
1 TTA
63733287 TTATTTTGTG
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
14 38 0.59
15 26 0.41
ACGTcount: A:0.18, C:0.00, G:0.44, T:0.38
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:63735418 original size:93 final size:93
Alignment explanation
Indices: 63735296--63735482 Score: 365
Period size: 93 Copynumber: 2.0 Consensus size: 93
63735286 AAAATAATTA
*
63735296 ATTTTATGATTATTATATCTTTATATATACTTTATTTATTATAAAGTTCTATTATTTAAATGAAT
1 ATTTTATGATTATTATATATTTATATATACTTTATTTATTATAAAGTTCTATTATTTAAATGAAT
63735361 CTTTAAAATTGTATATTTTTATATTTAG
66 CTTTAAAATTGTATATTTTTATATTTAG
63735389 ATTTTATGATTATTATATATTTATATATACTTTATTTATTATAAAGTTCTATTATTTAAATGAAT
1 ATTTTATGATTATTATATATTTATATATACTTTATTTATTATAAAGTTCTATTATTTAAATGAAT
63735454 CTTTAAAATTGTATATTTTTATATTTAG
66 CTTTAAAATTGTATATTTTTATATTTAG
63735482 A
1 A
63735483 AAATTAAAAT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.35, C:0.04, G:0.05, T:0.56
Consensus pattern (93 bp):
ATTTTATGATTATTATATATTTATATATACTTTATTTATTATAAAGTTCTATTATTTAAATGAAT
CTTTAAAATTGTATATTTTTATATTTAG
Found at i:63737019 original size:9 final size:9
Alignment explanation
Indices: 63736997--63737480 Score: 498
Period size: 9 Copynumber: 54.3 Consensus size: 9
63736987 CATAATTAAA
63736997 TTACA-AAC
1 TTACATAAC
*
63737005 TTACATAAT
1 TTACATAAC
*
63737014 TTACATAAT
1 TTACATAAC
63737023 TTACATAAC
1 TTACATAAC
*
63737032 ATACATAAC
1 TTACATAAC
*
63737041 TTA-ACAAC
1 TTACATAAC
*
63737049 TTACATGAC
1 TTACATAAC
*
63737058 TCACATAAC
1 TTACATAAC
* *
63737067 TTATATAAT
1 TTACATAAC
63737076 TTACATAAC
1 TTACATAAC
*
63737085 TCACATAAC
1 TTACATAAC
*
63737094 ATACATAAC
1 TTACATAAC
*
63737103 TTA-ACAAC
1 TTACATAAC
* *
63737111 TTACACAAT
1 TTACATAAC
63737120 TTACATAAC
1 TTACATAAC
*
63737129 TCACATAAC
1 TTACATAAC
* *
63737138 ATACAAAAC
1 TTACATAAC
*
63737147 TTA-ACAAC
1 TTACATAAC
63737155 TTACATAAC
1 TTACATAAC
*
63737164 TTACATAAT
1 TTACATAAC
63737173 TTACATAAC
1 TTACATAAC
*
63737182 TCACATAAC
1 TTACATAAC
*
63737191 ATACATAACAAC
1 TTACAT---AAC
63737203 TTACATAAC
1 TTACATAAC
*
63737212 TCACATAAC
1 TTACATAAC
*
63737221 TTACATAAT
1 TTACATAAC
63737230 TTACATAAC
1 TTACATAAC
*
63737239 TCACATAAC
1 TTACATAAC
63737248 TTACATAAC
1 TTACATAAC
*
63737257 TTA-ACAAC
1 TTACATAAC
63737265 TTACATAAC
1 TTACATAAC
*
63737274 TCACATAAC
1 TTACATAAC
* *
63737283 TTACGTAAT
1 TTACATAAC
*
63737292 TTACATAAA
1 TTACATAAC
*
63737301 TCACATAAC
1 TTACATAAC
63737310 TTACATAAC
1 TTACATAAC
*
63737319 TTA-ACAAC
1 TTACATAAC
63737327 TTACATAAC
1 TTACATAAC
*
63737336 TCACATAAC
1 TTACATAAC
* *
63737345 TTACGTAAT
1 TTACATAAC
*
63737354 TTACATAAA
1 TTACATAAC
*
63737363 TCACATAAC
1 TTACATAAC
63737372 TTACATAAC
1 TTACATAAC
*
63737381 TTA-ACAAC
1 TTACATAAC
63737389 TTACATAAC
1 TTACATAAC
*
63737398 TCACATAAC
1 TTACATAAC
* *
63737407 TTACGTAAT
1 TTACATAAC
*
63737416 TTACATAAA
1 TTACATAAC
*
63737425 TCACATAAC
1 TTACATAAC
63737434 TTACATAAC
1 TTACATAAC
*
63737443 TTA-ACAAC
1 TTACATAAC
63737451 TTACATAAC
1 TTACATAAC
*
63737460 TCACATAAC
1 TTACATAAC
63737469 TTACATAAC
1 TTACATAAC
63737478 TTA
1 TTA
63737481 ACTAATACAT
Statistics
Matches: 387, Mismatches: 78, Indels: 21
0.80 0.16 0.04
Matches are distributed among these distances:
8 54 0.14
9 325 0.84
12 8 0.02
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (9 bp):
TTACATAAC
Found at i:63737075 original size:62 final size:61
Alignment explanation
Indices: 63736993--63737471 Score: 532
Period size: 62 Copynumber: 7.8 Consensus size: 61
63736983 GTTACATAAT
* * * * *
63736993 TAAATTACA-AACTTACATAATTTACATAATTTACATAACAT-ACATAACTTAACAACTTACA
1 TAAATCACATAACTTACATAACTTA-ACAACTTACATAAC-TCACATAACTTAACAATTTACA
* * * * * * *
63737054 TGACTCACATAACTTATATAATTTACATAACTCACATAACAT-ACATAACTTAACAACTTACA
1 TAAATCACATAACTTACATAACTTA-ACAACTTACATAAC-TCACATAACTTAACAATTTACA
* * * * * * * * *
63737116 CAATTTACATAACTCACATAACATACAAAACTTA-ACAACTTACATAACTTACATAATTTACA
1 TAAATCACATAACTTACATAACTTA-ACAACTTACATAACTCACATAACTTA-ACAATTTACA
* * *
63737178 TAACTCACAT-A---ACAT-ACATAACAACTTACATAACTCACATAACTTACATAATTTACA
1 TAAATCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTA-ACAATTTACA
*
63737235 TAACTCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTT-ACGTAATTTACA
1 TAAATCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTAAC--AATTTACA
63737297 TAAATCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTT-ACGTAATTTACA
1 TAAATCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTAAC--AATTTACA
63737359 TAAATCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTT-ACGTAATTTACA
1 TAAATCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTAAC--AATTTACA
63737421 TAAATCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTA
1 TAAATCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTA
63737472 CATAACTTAA
Statistics
Matches: 378, Mismatches: 28, Indels: 22
0.88 0.07 0.05
Matches are distributed among these distances:
56 7 0.02
57 41 0.11
58 5 0.01
60 2 0.01
61 25 0.07
62 298 0.79
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (61 bp):
TAAATCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTAACAATTTACA
Found at i:63737208 original size:21 final size:21
Alignment explanation
Indices: 63737179--63737220 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
63737169 TAATTTACAT
63737179 AACTCACATAACAT-ACATAAC
1 AACTCACATAAC-TCACATAAC
*
63737200 AACTTACATAACTCACATAAC
1 AACTCACATAACTCACATAAC
63737221 TTACATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (21 bp):
AACTCACATAACTCACATAAC
Found at i:63737472 original size:62 final size:62
Alignment explanation
Indices: 63737058--63737472 Score: 569
Period size: 62 Copynumber: 6.8 Consensus size: 62
63737048 CTTACATGAC
* * * * * * *
63737058 TCACATAACTTATATAATTTACATAACTCACATAACAT-ACATAACTTAAC--AACTTACACAAT
1 TCACATAACTTACATAACTTA-ACAACTTACATAAC-TCACATAACTT-ACGTAATTTACATAAA
* * * * * * * *
63737120 TTACATAACTCACATAACATACAAAACTTA-ACAACTTACATAACTTACATAATTTACATAAC
1 TCACATAACTTACATAACTTA-ACAACTTACATAACTCACATAACTTACGTAATTTACATAAA
* * *
63737182 TCACAT-A---ACAT-ACATAACAACTTACATAACTCACATAACTTACATAATTTACATAAC
1 TCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTACGTAATTTACATAAA
63737239 TCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTACGTAATTTACATAAA
1 TCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTACGTAATTTACATAAA
63737301 TCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTACGTAATTTACATAAA
1 TCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTACGTAATTTACATAAA
63737363 TCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTACGTAATTTACATAAA
1 TCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTACGTAATTTACATAAA
63737425 TCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTAC
1 TCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTAC
63737473 ATAACTTAAC
Statistics
Matches: 326, Mismatches: 18, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
56 7 0.02
57 41 0.13
58 5 0.02
60 3 0.01
61 18 0.06
62 252 0.77
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (62 bp):
TCACATAACTTACATAACTTAACAACTTACATAACTCACATAACTTACGTAATTTACATAAA
Found at i:63746065 original size:20 final size:20
Alignment explanation
Indices: 63746035--63746079 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
63746025 CTGTTTTATT
63746035 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
63746054 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
63746074 ATGGGC
1 ATGGGC
63746080 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:63746221 original size:27 final size:28
Alignment explanation
Indices: 63746169--63746221 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
63746159 TATTGTAATA
* *
63746169 GGGCTATGGCCCAGATTAATACTGATAT
1 GGGCTAAGGCCCAGATTAACACTGATAT
63746197 GGGCTAAGGCCCA-ATTAACACTGAT
1 GGGCTAAGGCCCAGATTAACACTGAT
63746222 TTCTGAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAACACTGATAT
Found at i:63748601 original size:13 final size:14
Alignment explanation
Indices: 63748583--63748611 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
63748573 TTATAAATAT
63748583 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
63748596 TTATAATGGTTTAA
1 TTATAATGGTTTAA
63748610 TT
1 TT
63748612 TGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:63749058 original size:21 final size:21
Alignment explanation
Indices: 63749029--63749101 Score: 74
Period size: 21 Copynumber: 3.5 Consensus size: 21
63749019 TATAGCGGAT
63749029 GCAGCAGCGAGGGAGGCAGAG
1 GCAGCAGCGAGGGAGGCAGAG
* *
63749050 GCAGTAGCGAGGGAGGCAGCG
1 GCAGCAGCGAGGGAGGCAGAG
* * * *
63749071 GCAACAACGAGGGGGGTAGAG
1 GCAGCAGCGAGGGAGGCAGAG
* *
63749092 GTAGTAGCGA
1 GCAGCAGCGA
63749102 TGGCAGCAGA
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.29, C:0.16, G:0.49, T:0.05
Consensus pattern (21 bp):
GCAGCAGCGAGGGAGGCAGAG
Found at i:63749555 original size:86 final size:86
Alignment explanation
Indices: 63749453--63749621 Score: 241
Period size: 86 Copynumber: 2.0 Consensus size: 86
63749443 CGTTTGTAGA
* * *
63749453 AAAAGCGCCGCTAAAGGACATGACTTTTAGCGGCGTTTCTAG-TGAAAGCACCGCTAAAGGTCAT
1 AAAAGCGCCACGAAAGGACATGACTTTTAGCGGCGTTTCTAGAT-AAAGCACCGCTAAAAGTCAT
*
63749517 GATCTTTAGTGGCGTTTTTTGT
65 GATCTTTAGTGGCATTTTTTGT
* * * * *
63749539 AAAAGCGCCACGAAAGGTCATGACTTTTAGCGGCGTTTGTGGATAAAGCGCCGCTAAAAGTCGTG
1 AAAAGCGCCACGAAAGGACATGACTTTTAGCGGCGTTTCTAGATAAAGCACCGCTAAAAGTCATG
63749604 ATCTTTAGTGGCATTTTT
66 ATCTTTAGTGGCATTTTT
63749622 CTCTTATAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
86 72 0.99
87 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (86 bp):
AAAAGCGCCACGAAAGGACATGACTTTTAGCGGCGTTTCTAGATAAAGCACCGCTAAAAGTCATG
ATCTTTAGTGGCATTTTTTGT
Found at i:63749611 original size:43 final size:43
Alignment explanation
Indices: 63749436--63749596 Score: 182
Period size: 43 Copynumber: 3.7 Consensus size: 43
63749426 TCTGTAAAAA
* * *
63749436 TTAGCAGCGTTTGTAGAAAAAGCGCCGCTAAAGGACATGACTT
1 TTAGCGGCGTTTGTAGTAAAAGCGCCGCTAAAGGTCATGACTT
* * *
63749479 TTAGCGGCGTTTCTAGTGAAAGCACCGCTAAAGGTCATGA-TCT
1 TTAGCGGCGTTTGTAGTAAAAGCGCCGCTAAAGGTCATGACT-T
* * * * *
63749522 TTAGTGGCGTTTTTTGTAAAAGCGCCACGAAAGGTCATGACTT
1 TTAGCGGCGTTTGTAGTAAAAGCGCCGCTAAAGGTCATGACTT
*
63749565 TTAGCGGCGTTTGT-GGATAAAGCGCCGCTAAA
1 TTAGCGGCGTTTGTAGTA-AAAGCGCCGCTAAA
63749597 AGTCGTGATC
Statistics
Matches: 97, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 3 0.03
43 93 0.96
44 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (43 bp):
TTAGCGGCGTTTGTAGTAAAAGCGCCGCTAAAGGTCATGACTT
Found at i:63771224 original size:46 final size:46
Alignment explanation
Indices: 63771157--63771248 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
63771147 CTTACCTTGC
63771157 CATTGAATGGTCATGGTGGTTCAAGGAGTTTATACTCCTCATTCCT
1 CATTGAATGGTCATGGTGGTTCAAGGAGTTTATACTCCTCATTCCT
*
63771203 CATTGAATGGTCATGGTGGTTCGAGGAGTTTATACTCCTCATTCCT
1 CATTGAATGGTCATGGTGGTTCAAGGAGTTTATACTCCTCATTCCT
63771249 GCTATCATTC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.37
Consensus pattern (46 bp):
CATTGAATGGTCATGGTGGTTCAAGGAGTTTATACTCCTCATTCCT
Found at i:63773823 original size:13 final size:13
Alignment explanation
Indices: 63773807--63773839 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
63773797 TTTGATTAAA
*
63773807 TTAGTTAATTAGT
1 TTAGATAATTAGT
63773820 TTAGATAATTAGT
1 TTAGATAATTAGT
63773833 TTA-ATAA
1 TTAGATAA
63773840 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:63776851 original size:39 final size:40
Alignment explanation
Indices: 63776792--63776875 Score: 152
Period size: 39 Copynumber: 2.1 Consensus size: 40
63776782 GTTTTAAGAT
63776792 TGATAGCAGGAACGAGGAGTATGAACTCCTCAACCCACCA
1 TGATAGCAGGAACGAGGAGTATGAACTCCTCAACCCACCA
*
63776832 TGAT-GCAGGAATGAGGAGTATGAACTCCTCAACCCACCA
1 TGATAGCAGGAACGAGGAGTATGAACTCCTCAACCCACCA
63776871 TGATA
1 TGATA
63776876 AATCAACGGA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
39 38 0.90
40 4 0.10
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.18
Consensus pattern (40 bp):
TGATAGCAGGAACGAGGAGTATGAACTCCTCAACCCACCA
Done.