Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 186 of 290
Found at i:63779260 original size:6 final size:6
Alignment explanation
Indices: 63779241--63779287 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
63779231 TCCTCTTATT
* *
63779241 TTTTTA TTTCTA TTTTTA TTTTTA TTTTTA TTTTTA TGTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
63779288 CGTTATAAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:63782171 original size:13 final size:13
Alignment explanation
Indices: 63782155--63782187 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
63782145 TTTGATTAAA
*
63782155 TTAGTTAATTAGT
1 TTAGATAATTAGT
63782168 TTAGATAATTAGT
1 TTAGATAATTAGT
63782181 TTA-ATAA
1 TTAGATAA
63782188 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:63798011 original size:30 final size:30
Alignment explanation
Indices: 63797975--63798044 Score: 113
Period size: 30 Copynumber: 2.3 Consensus size: 30
63797965 ATAAATGAGG
*
63797975 CCACACGGGCGTGCGACATGGCCGTGTATA
1 CCACACGGGCGTGCGACATGGCAGTGTATA
*
63798005 CCACACGGGCGTGCGACATGGCAGTGTATG
1 CCACACGGGCGTGCGACATGGCAGTGTATA
*
63798035 CCATACGGGC
1 CCACACGGGC
63798045 ATGTCCCAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.20, C:0.30, G:0.34, T:0.16
Consensus pattern (30 bp):
CCACACGGGCGTGCGACATGGCAGTGTATA
Found at i:63798670 original size:12 final size:13
Alignment explanation
Indices: 63798636--63798714 Score: 69
Period size: 12 Copynumber: 6.2 Consensus size: 13
63798626 TTATGTTGTA
*
63798636 ATTATTATT-ATT
1 ATTATTATTCTTT
*
63798648 ATTACTATTCTTT
1 ATTATTATTCTTT
63798661 ATTATT-TTC-TT
1 ATTATTATTCTTT
63798672 ATTATTATTCTTGT
1 ATTATTATTCTT-T
*
63798686 CATTATTAGTCTTT
1 -ATTATTATTCTTT
63798700 -TTAGTTATT-TTT
1 ATTA-TTATTCTTT
63798712 ATT
1 ATT
63798715 CTATTGGTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
11 8 0.15
12 20 0.36
13 14 0.25
14 2 0.04
15 11 0.20
ACGTcount: A:0.23, C:0.08, G:0.04, T:0.66
Consensus pattern (13 bp):
ATTATTATTCTTT
Found at i:63800281 original size:6 final size:6
Alignment explanation
Indices: 63800270--63800355 Score: 109
Period size: 6 Copynumber: 14.3 Consensus size: 6
63800260 ATTGAGTCCA
* * * * *
63800270 TTTATC TTTATC TTTATC TTTATG TTTATT TTTATT TTTATT TCTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
63800318 TCTATT TTTATT TTTATT TTTATT TTTATG TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
63800356 GTTTTCCTAT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
6 74 1.00
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:63800578 original size:19 final size:21
Alignment explanation
Indices: 63800554--63800595 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
63800544 ATCTCCCTAC
63800554 ATTATGA-TAT-TTTGTTTGT
1 ATTATGATTATATTTGTTTGT
63800573 ATTATGATTTATATTTGTTTGT
1 ATTATGA-TTATATTTGTTTGT
63800595 A
1 A
63800596 CATTGATGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
21 3 0.15
22 10 0.50
ACGTcount: A:0.24, C:0.00, G:0.14, T:0.62
Consensus pattern (21 bp):
ATTATGATTATATTTGTTTGT
Found at i:63802528 original size:30 final size:30
Alignment explanation
Indices: 63802494--63802553 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
63802484 CTATATTTGA
63802494 GATGTTTTTCTACTACAATATGAACTAAAC
1 GATGTTTTTCTACTACAATATGAACTAAAC
63802524 GATGTTTTTCTACTACAATATGAACTAAAC
1 GATGTTTTTCTACTACAATATGAACTAAAC
63802554 TCCCTAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (30 bp):
GATGTTTTTCTACTACAATATGAACTAAAC
Found at i:63807981 original size:26 final size:25
Alignment explanation
Indices: 63807930--63807982 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
63807920 GTTGAAATAG
* * *
63807930 TTATTTAATTAATATTTATAATAAT
1 TTATTTAATTAATACTTAAAAAAAT
*
63807955 TTATTTTATTAATAACTTAAAAAAAT
1 TTATTTAATTAAT-ACTTAAAAAAAT
63807981 TT
1 TT
63807983 TCAAATCTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (25 bp):
TTATTTAATTAATACTTAAAAAAAT
Found at i:63808811 original size:174 final size:173
Alignment explanation
Indices: 63808521--63808867 Score: 685
Period size: 174 Copynumber: 2.0 Consensus size: 173
63808511 TATAGTTCCA
63808521 ACTTTCATTTTTTTTACAACAATATATGTTTTCTAATTGTATAATTTTATAAAATTTCATGCTAA
1 ACTTTCATTTTTTTTACAACAATATATGTTTTCTAATTGTATAATTTTATAAAATTTCATGCTAA
63808586 TATCTTATATAAAATTCTATGGTGCTTATAATATAAACATAAACGAAACAAAAAATCTTCAAAAA
66 TATCTTATATAAAATTCTATGGTGCTTATAATATAAACATAAACGAAACAAAAAATCTTCAAAAA
63808651 TGATTCATGATAACATTTAAAAAAAAAAACTACATAAGATTTAG
131 TGATTCATGATAACATTT-AAAAAAAAAACTACATAAGATTTAG
63808695 ACTTTCATTTTTTTTACAACAATATATGTTTTCTAATTGTATAATTTTATAAAATTTCATGCTAA
1 ACTTTCATTTTTTTTACAACAATATATGTTTTCTAATTGTATAATTTTATAAAATTTCATGCTAA
63808760 TATCTTATATAAAATTCTATGGTGCTTATAATATAAACATAAACGAAACAAAAAATCTTCAAAAA
66 TATCTTATATAAAATTCTATGGTGCTTATAATATAAACATAAACGAAACAAAAAATCTTCAAAAA
63808825 TGATTCATGATAACATTTAAAAAAAAAACTACATAAGATTTAG
131 TGATTCATGATAACATTTAAAAAAAAAACTACATAAGATTTAG
63808868 CATATAATTT
Statistics
Matches: 173, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
173 25 0.14
174 148 0.86
ACGTcount: A:0.45, C:0.11, G:0.06, T:0.38
Consensus pattern (173 bp):
ACTTTCATTTTTTTTACAACAATATATGTTTTCTAATTGTATAATTTTATAAAATTTCATGCTAA
TATCTTATATAAAATTCTATGGTGCTTATAATATAAACATAAACGAAACAAAAAATCTTCAAAAA
TGATTCATGATAACATTTAAAAAAAAAACTACATAAGATTTAG
Found at i:63818207 original size:22 final size:22
Alignment explanation
Indices: 63818168--63818209 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
63818158 ACTCATAAAT
*
63818168 GAAACAGAAAACATAATAGATA
1 GAAACAGAAAACAAAATAGATA
* *
63818190 GAAACATAAGACAAAATAGA
1 GAAACAGAAAACAAAATAGA
63818210 CATATACATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.64, C:0.10, G:0.14, T:0.12
Consensus pattern (22 bp):
GAAACAGAAAACAAAATAGATA
Found at i:63819574 original size:18 final size:17
Alignment explanation
Indices: 63819553--63819646 Score: 77
Period size: 18 Copynumber: 5.5 Consensus size: 17
63819543 TCTTTCACAC
63819553 TCTTTTTCAATTTCTTTT
1 TCTTTTTCAATTTC-TTT
*
63819571 TCTTGTTCACACTTTCTTT
1 TCTTTTTCA-A-TTTCTTT
* **
63819590 T-TATTTCAAAATCTTT
1 TCTTTTTCAATTTCTTT
*
63819606 TC-TTGT-AATTTCTTTT
1 TCTTTTTCAATTTC-TTT
*
63819622 TCCTTTTCAATTTCTTT
1 TCTTTTTCAATTTCTTT
63819639 TCTTTTTC
1 TCTTTTTC
63819647 TCTCAAGTGC
Statistics
Matches: 59, Mismatches: 11, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
15 4 0.07
16 13 0.22
17 14 0.24
18 19 0.32
19 5 0.08
20 4 0.07
ACGTcount: A:0.14, C:0.19, G:0.02, T:0.65
Consensus pattern (17 bp):
TCTTTTTCAATTTCTTT
Found at i:63827140 original size:18 final size:18
Alignment explanation
Indices: 63827106--63827140 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63827096 TGTATCCTAA
*
63827106 TTTTCTTCCTCTAGATCC
1 TTTTCTTCCTCGAGATCC
*
63827124 TTTTCTTCCTCGGGATC
1 TTTTCTTCCTCGAGATC
63827141 TTCATCCTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.31, G:0.11, T:0.49
Consensus pattern (18 bp):
TTTTCTTCCTCGAGATCC
Found at i:63838093 original size:98 final size:98
Alignment explanation
Indices: 63837938--63838118 Score: 238
Period size: 98 Copynumber: 1.8 Consensus size: 98
63837928 GGATGTTACA
* * * * * **
63837938 TATGGTCTTACACACCATAATTCCTCACGTTTAATGTCGTGGCGAACTACCTTGTGTTCATTGTC
1 TATGGTCTAACACACCATAATTCCCCACGTTTAATGTCATGGAGAACAACCCCGTGTTCATTGTC
63838003 CTGCCAGACTACCATTTGTTGCCATAGTCGAAC
66 CTGCCAGACTACCATTTGTTGCCATAGTCGAAC
* * *
63838036 TATGGTCTAACACATCATAATTCCCCATGTTTAATGTCATGGA-AGACAACCCCGTGTTTATTGT
1 TATGGTCTAACACACCATAATTCCCCACGTTTAATGTCATGGAGA-ACAACCCCGTGTTCATTGT
**
63838100 CCTGGTAGACTACCATTTG
65 CCTGCCAGACTACCATTTG
63838119 GTTCTATGTC
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
97 1 0.01
98 69 0.99
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (98 bp):
TATGGTCTAACACACCATAATTCCCCACGTTTAATGTCATGGAGAACAACCCCGTGTTCATTGTC
CTGCCAGACTACCATTTGTTGCCATAGTCGAAC
Found at i:63838100 original size:27 final size:27
Alignment explanation
Indices: 63838058--63838109 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
63838048 CATCATAATT
63838058 CCCCATGTTTAATGTCATGGAAGACAA
1 CCCCATGTTTAATGTCATGGAAGACAA
* * * *
63838085 CCCCGTGTTTATTGTCCTGGTAGAC
1 CCCCATGTTTAATGTCATGGAAGAC
63838110 TACCATTTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (27 bp):
CCCCATGTTTAATGTCATGGAAGACAA
Found at i:63838138 original size:98 final size:97
Alignment explanation
Indices: 63837937--63838163 Score: 232
Period size: 98 Copynumber: 2.4 Consensus size: 97
63837927 GGGATGTTAC
* * * * * * **
63837937 ATATGGTCTTACACACCATAATTCCTCACGTTTAATGTCGTGGCGAACTACCTTGTGTTCATTGT
1 ATATGGTCTTACACATCATAATTCCCCATGTTTAATGTCATGGAGAACAACCCCGTGTTCATTGT
63838002 CCTGCCAGACTACCATTTGTTGCCATAGTCGA
66 CCTGCCAGACTACCATTTGTTGCCATAGTCGA
* *
63838034 ACTATGGTCTAACACATCATAATTCCCCATGTTTAATGTCATGGA-AGACAACCCCGTGTTTATT
1 A-TATGGTCTTACACATCATAATTCCCCATGTTTAATGTCATGGAGA-ACAACCCCGTGTTCATT
** *
63838098 GTCCTGGTAGACTACCATTTGGTT-CTAT-GTCTGA
64 GTCCTGCCAGACTACCATTT-GTTGCCATAGTC-GA
* *
63838132 GATATGGTGTTACACAT--T-ATTCCCAATGTTTA
1 -ATATGGTCTTACACATCATAATTCCCCATGTTTA
63838164 GCATCCTAAA
Statistics
Matches: 109, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
95 13 0.12
96 1 0.01
97 5 0.05
98 86 0.79
99 4 0.04
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (97 bp):
ATATGGTCTTACACATCATAATTCCCCATGTTTAATGTCATGGAGAACAACCCCGTGTTCATTGT
CCTGCCAGACTACCATTTGTTGCCATAGTCGA
Found at i:63846369 original size:40 final size:40
Alignment explanation
Indices: 63846286--63846468 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
63846276 ATTCCCAAAC
* * * *
63846286 CAAATGCCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-TAACTCGCA
* *
63846325 CAAATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
63846365 CAAATGCCTTCAGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
63846405 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
63846444 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
63846469 TTATCATCCG
Statistics
Matches: 128, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 54 0.42
40 73 0.57
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:63846425 original size:79 final size:79
Alignment explanation
Indices: 63846286--63846468 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 79
63846276 ATTCCCAAAC
* * * *
63846286 CAAATGCCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCAG
1 CAAATGCCTTCGG-ACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
63846350 -TTATAGTAACTCGCA
65 AAT-TAGTAACTAGCA
63846365 CAAATGCCTTCAGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTC-GGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
63846428 GAATTAGTCACTAGCA
64 GAATTAGTAACTAGCA
63846444 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG
63846469 TTATCATCCG
Statistics
Matches: 92, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
79 60 0.65
80 32 0.35
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTAGCA
Found at i:63851990 original size:47 final size:47
Alignment explanation
Indices: 63851937--63852278 Score: 495
Period size: 47 Copynumber: 7.2 Consensus size: 47
63851927 AATTCTAAAT
63851937 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
63851984 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
63852033 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
63852080 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* * *
63852129 TGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
63852176 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
63852223 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
63852270 TGTGATAAG
1 TGTGATAAG
63852279 TCCCGAAGGG
Statistics
Matches: 265, Mismatches: 26, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
47 177 0.67
49 88 0.33
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:63852101 original size:96 final size:96
Alignment explanation
Indices: 63851937--63852278 Score: 517
Period size: 96 Copynumber: 3.6 Consensus size: 96
63851927 AATTCTAAAT
* *
63851937 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
63852002 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * * *
63852033 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
63852098 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * *
63852129 TGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
63852194 CCGATGTGATGAATGTGAAAGTG--TATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * * * * * **
63852223 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
63852279 TCCCGAAGGG
Statistics
Matches: 227, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
94 52 0.23
96 175 0.77
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATA
Found at i:63852181 original size:143 final size:143
Alignment explanation
Indices: 63851940--63852278 Score: 506
Period size: 143 Copynumber: 2.4 Consensus size: 143
63851930 TCTAAATTGT
63851940 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCC
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCC
* *
63852004 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
66 AATGTGATGAATGTGAAAGTG-ATATATACGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
*
63852069 AAGTGTATATGTGC
130 AAGTGTATATATGC
* *
63852083 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGC
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGC
*
63852148 CAATGTGATGAATGTGAAAGTG-TATATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
65 CAATGTGATGAATGTGAAAGTGATATATACGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
*
63852212 AAGTGTATATATGT
130 AAGTGTATATATGC
* * * * * *
63852226 GACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATA-A-ATGTGATAAG
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAG
63852279 TCCCGAAGGG
Statistics
Matches: 179, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
141 10 0.06
142 1 0.01
143 123 0.69
145 45 0.25
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCC
AATGTGATGAATGTGAAAGTGATATATACGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGC
Found at i:63852452 original size:37 final size:37
Alignment explanation
Indices: 63852396--63852474 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
63852386 TCGAACTCTA
* * *
63852396 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
63852433 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
63852470 AAGAC
1 AAGAC
63852475 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:63858079 original size:40 final size:40
Alignment explanation
Indices: 63857998--63858175 Score: 259
Period size: 40 Copynumber: 4.5 Consensus size: 40
63857988 CAACCAAGTA
** * *
63857998 CCTTCGGGGTTTAG-CCGGATATAGTTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
63858037 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63858077 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
63858117 CCTTTGGGACTTAGCCCAGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63858157 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
63858176 TTATCATCCG
Statistics
Matches: 125, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 12 0.10
40 113 0.90
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63862076 original size:43 final size:42
Alignment explanation
Indices: 63862028--63862113 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 42
63862018 GAACCCAAGG
*
63862028 GAAAGAGCAATGC-AAGATCATCACTCTTAAAAGTGGGACTCA
1 GAAAGAGCAATGCAAAGA-CATCACTCTTAAAACTGGGACTCA
* * *
63862070 NGAAAGAGTAGTGCAAAGACATCACTCTTAGAACTGGGACTCA
1 -GAAAGAGCAATGCAAAGACATCACTCTTAAAACTGGGACTCA
63862113 G
1 G
63862114 TTGGATAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 1 0.03
43 33 0.87
44 4 0.11
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.19
Consensus pattern (42 bp):
GAAAGAGCAATGCAAAGACATCACTCTTAAAACTGGGACTCA
Found at i:63862866 original size:47 final size:47
Alignment explanation
Indices: 63862773--63862867 Score: 111
Period size: 47 Copynumber: 2.0 Consensus size: 47
63862763 AAATTTATAT
* * *
63862773 TTCCTGCAGATTTCCTTATTTTAGAATGTAAAGCTGACTAAGATGTG
1 TTCCTGCAGATTTCCTTAATTTAGAATGTAAAGATGACTAAAATGTG
* * * *
63862820 TTCCTGCTGATTTTCTTAATTTAGAATTTGAAGATGA-TCAAAATGTG
1 TTCCTGCAGATTTCCTTAATTTAGAATGTAAAGATGACT-AAAATGTG
63862867 T
1 T
63862868 CAATTATTCT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
46 1 0.03
47 39 0.98
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (47 bp):
TTCCTGCAGATTTCCTTAATTTAGAATGTAAAGATGACTAAAATGTG
Found at i:63870380 original size:50 final size:50
Alignment explanation
Indices: 63870305--63870405 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
63870295 TTTATTTATC
63870305 AAGTTACATATTATTCACAAAATCATTTTCATAATTGCCATTACATTTCT
1 AAGTTACATATTATTCACAAAATCATTTTCATAATTGCCATTACATTTCT
*
63870355 AAGTTACATATTATTCACATAATCATTTTCATAATTGCCATTACATTTCT
1 AAGTTACATATTATTCACAAAATCATTTTCATAATTGCCATTACATTTCT
63870405 A
1 A
63870406 CTCTCGTTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.36, C:0.18, G:0.04, T:0.43
Consensus pattern (50 bp):
AAGTTACATATTATTCACAAAATCATTTTCATAATTGCCATTACATTTCT
Found at i:63876578 original size:21 final size:21
Alignment explanation
Indices: 63876554--63876610 Score: 89
Period size: 21 Copynumber: 2.7 Consensus size: 21
63876544 TATGGTCCAA
*
63876554 GGGACACTCCCGTGTGACCCT
1 GGGACACACCCGTGTGACCCT
63876575 GGGACACACCCGTGTGACCCT
1 GGGACACACCCGTGTGACCCT
63876596 GGGACA-AGCCCGTGT
1 GGGACACA-CCCGTGT
63876611 TGGAGGCCGT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
20 1 0.03
21 33 0.97
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (21 bp):
GGGACACACCCGTGTGACCCT
Found at i:63879326 original size:20 final size:21
Alignment explanation
Indices: 63879301--63879340 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
63879291 CACTTAAAAC
63879301 AGGGC-ACACGGC-CGTGTGGG
1 AGGGCAACAC-GCTCGTGTGGG
63879321 AGGGCAACACGCTCGTGTGG
1 AGGGCAACACGCTCGTGTGG
63879341 CCCTGTTGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.17, C:0.25, G:0.45, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCTCGTGTGGG
Found at i:63882303 original size:98 final size:97
Alignment explanation
Indices: 63882130--63882310 Score: 229
Period size: 98 Copynumber: 1.9 Consensus size: 97
63882120 GGGGTAAGAT
* * * *
63882130 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATTAAAGTTGATGTCGTGTCCCA
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTTGATGGCATATCCCA
* *
63882195 GATAGGTCTTACACTAACTTTCATATGTCGAG
66 GACAAGTCTTACACTAACTTTCATATGTCGAG
* ** ***
63882227 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATCTATCGGTGTTGATGGCATATCC
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-C-ATCAAAGTTGATGGCATATCC
63882291 CAGACAAGTCTTACACTAAC
64 CAGACAAGTCTTACACTAAC
63882311 ACACAACAAG
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
96 17 0.24
97 21 0.30
98 32 0.46
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (97 bp):
GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTTGATGGCATATCCCA
GACAAGTCTTACACTAACTTTCATATGTCGAG
Found at i:63890265 original size:18 final size:18
Alignment explanation
Indices: 63890242--63890283 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
63890232 AATGAATTGT
63890242 ATTAAATTGCTTGATGTG
1 ATTAAATTGCTTGATGTG
63890260 ATTAAATTGCTTGATGTG
1 ATTAAATTGCTTGATGTG
63890278 ATTAAA
1 ATTAAA
63890284 AATGCATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43
Consensus pattern (18 bp):
ATTAAATTGCTTGATGTG
Found at i:63898777 original size:79 final size:81
Alignment explanation
Indices: 63898641--63898825 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
63898631 TTGAATGATG
*
63898641 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
63898705 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
63898720 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
63898782 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
63898800 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63898826 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:63898839 original size:40 final size:40
Alignment explanation
Indices: 63898642--63898825 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
63898632 TGAATGATGT
* * * *
63898642 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
63898682 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
63898722 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
63898760 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
63898801 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63898826 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:63898847 original size:79 final size:79
Alignment explanation
Indices: 63898642--63898858 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
63898632 TGAATGATGT
** * * * **
63898642 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
63898705 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
63898722 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
63898787 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
63898801 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
63898859 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:63901189 original size:40 final size:40
Alignment explanation
Indices: 63901133--63901310 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
63901123 CGGATGATAA
* *
63901133 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
63901173 TCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
63901213 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
63901253 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
63901293 -CTGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
63901311 TACTTGGTTT
Statistics
Matches: 123, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 18 0.15
40 104 0.85
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:63906137 original size:55 final size:54
Alignment explanation
Indices: 63906050--63906484 Score: 481
Period size: 55 Copynumber: 8.0 Consensus size: 54
63906040 ATTAGGGTTT
*
63906050 AAGGATACCATGTAAGACCATGCCAAGGCATGGCCATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTTCATAAGGC
* * *
63906105 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGC
* *
63906160 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCATAAGGC
* * *
63906215 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGC
* *
63906270 GAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCATAAGGC
* * *
63906325 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGC
* * * *
63906380 GAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTAGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * * * * * *
63906433 AAGGATACCGTGTCAGACCATGTCGAGACATGGAAATGGTAAGCTTCA-AAGG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGG
63906485 ATACCACGTA
Statistics
Matches: 322, Mismatches: 41, Indels: 36
0.81 0.10 0.09
Matches are distributed among these distances:
52 4 0.01
53 54 0.17
54 37 0.11
55 191 0.59
56 26 0.08
57 10 0.03
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
Found at i:63906250 original size:110 final size:110
Alignment explanation
Indices: 63906057--63906465 Score: 716
Period size: 110 Copynumber: 3.7 Consensus size: 110
63906047 TTTAAGGATA
*
63906057 CCATGTAAGACCATGCCAAGGCATGGCCATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
*
63906122 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCGAAGGTC
63906167 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
63906232 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCGAAGGTC
66 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCGAAGGTC
63906277 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
63906342 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCGAAGGTC
66 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCGAAGGTC
* * * * *
63906387 CCATGTAAGACCATGCCAAGGCATGGC-ATTAGTGA-G-TTCATAAGGCAAGGATACCGTGTCAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATATCATGTAAG
*
63906449 ACCATGTCGAGACATGG
65 ACCATGTCAAGACATGG
63906466 AAATGGTAAG
Statistics
Matches: 290, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
107 3 0.01
108 36 0.12
109 6 0.02
110 245 0.84
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCGAAGGTC
Found at i:63911106 original size:26 final size:27
Alignment explanation
Indices: 63911077--63911130 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
63911067 AGAAGTGCCG
*
63911077 AATATTCACTGA-TCACAAAAG-TTTGA
1 AATATTCAATGACTCA-AAAAGATTTGA
*
63911103 AATATTTAATGACTCAAAAAGATTTGA
1 AATATTCAATGACTCAAAAAGATTTGA
63911130 A
1 A
63911131 CTTGAGGCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.31
Consensus pattern (27 bp):
AATATTCAATGACTCAAAAAGATTTGA
Found at i:63913404 original size:31 final size:31
Alignment explanation
Indices: 63913359--63913423 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
63913349 CATAGGTGAA
*
63913359 ATGTGTTTACTTTGATGTTTTATGGTAGAAT
1 ATGTGGTTACTTTGATGTTTTATGGTAGAAT
*
63913390 ATGTGGTTATTTTGATGTTTTATGGTAGAAT
1 ATGTGGTTACTTTGATGTTTTATGGTAGAAT
63913421 ATG
1 ATG
63913424 AAGCTTGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.02, G:0.25, T:0.51
Consensus pattern (31 bp):
ATGTGGTTACTTTGATGTTTTATGGTAGAAT
Found at i:63914090 original size:55 final size:54
Alignment explanation
Indices: 63914003--63914257 Score: 247
Period size: 55 Copynumber: 4.8 Consensus size: 54
63913993 ATTAGGGTTT
*
63914003 AAGGATACCATGTAAGACCATGCCAAGGCATGGCCATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTTCATAAGGC
* * *
63914058 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGC
* * * *
63914113 AAAGG-TCCCGTGTAAGACCATGCCAAGGCATGGCATTAGTAAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * * * * *
63914166 AAGGATACCATGTCAGACCATGTCGAGACATGGAAATGGTATGTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* ** * *
63914215 AAGGATACCACGTAAGACCATGATAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
63914258 GTACTCGTGT
Statistics
Matches: 166, Mismatches: 29, Indels: 16
0.79 0.14 0.08
Matches are distributed among these distances:
49 35 0.21
52 6 0.04
53 40 0.24
54 14 0.08
55 67 0.40
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
Found at i:63914212 original size:108 final size:110
Alignment explanation
Indices: 63914013--63914212 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 110
63914003 AAGGATACCA
* *
63914013 TGTAAGACCATGCCAAGGCATGGCCATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCCATTAGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCA
* *
63914078 TGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTCCCG
66 TGTCAAGACATGGAAATGATAAGTTTCTATAAGGCAAAGGTCCCG
*
63914123 TGTAAGACCATGCCAAGGCATGG-CATTAGTAA-G-TTCATAAGGCAAGGATACCATGTCAGACC
1 TGTAAGACCATGCCAAGGCATGGCCATTAGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGACC
* * *
63914185 ATGTCGAGACATGGAAATGGTATGTTTC
65 ATGTCAAGACATGGAAATGATAAGTTTC
63914213 AAAAGGATAC
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 8 0.10
110 23 0.28
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCCATTAGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGAAATGATAAGTTTCTATAAGGCAAAGGTCCCG
Found at i:63918791 original size:18 final size:18
Alignment explanation
Indices: 63918738--63919033 Score: 156
Period size: 18 Copynumber: 16.1 Consensus size: 18
63918728 TCATTAACAC
* *
63918738 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAATTAT
* **
63918755 TCAGTAACAGTCAGCTAT
1 TCAGTAACAATCAATTAT
63918773 TCAGTAACAATCAATTAT
1 TCAGTAACAATCAATTAT
* * * *
63918791 TCA-AATATAACCAGTTAT
1 TCAGTA-ACAATCAATTAT
*
63918809 TCAGTATCGATCAATTGATCAGTTAT
1 TCAGTA---A-CAA----TCAATTAT
*
63918835 CCAGTAACAATCAATTAT
1 TCAGTAACAATCAATTAT
63918853 TCAGTAA-AATCAGA-TAT
1 TCAGTAACAATCA-ATTAT
*
63918870 TCAGTAACAATTAAGTTAT
1 TCAGTAACAATCAA-TTAT
*
63918889 TCAGTAACAGTC-ATTCAT
1 TCAGTAACAATCAATT-AT
* *
63918907 TCAGTGACAATCAGTTAT
1 TCAGTAACAATCAATTAT
**
63918925 TCAGTAATGATCAATTAT
1 TCAGTAACAATCAATTAT
*** *
63918943 TCAGTAATGTTCAGTTAT
1 TCAGTAACAATCAATTAT
*
63918961 TCAGTAACAGTCTAA-TAT
1 TCAGTAACAATC-AATTAT
* * *
63918979 CCAGTAGCAGTCAATTA-
1 TCAGTAACAATCAATTAT
*
63918996 TCCGATAACAATCAATTAT
1 TCAG-TAACAATCAATTAT
* * *
63919015 TTAGTAATAATCAGTTAT
1 TCAGTAACAATCAATTAT
63919033 T
1 T
63919034 TTATACCTTT
Statistics
Matches: 215, Mismatches: 44, Indels: 39
0.72 0.15 0.13
Matches are distributed among these distances:
17 27 0.13
18 150 0.70
19 19 0.09
21 1 0.00
22 5 0.02
23 1 0.00
26 12 0.06
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (18 bp):
TCAGTAACAATCAATTAT
Found at i:63918893 original size:62 final size:62
Alignment explanation
Indices: 63918765--63918880 Score: 153
Period size: 62 Copynumber: 1.9 Consensus size: 62
63918755 TCAGTAACAG
* * * * * *
63918765 TCAGCTATTCAGTAACAATCAATTATTCAAATATAACCAGTTATTCAGTATCGATCAATTGA
1 TCAGTTATCCAGTAACAATCAATTATTCAAATAAAACCAGATATTCAGTAACAATCAATTGA
* *
63918827 TCAGTTATCCAGTAACAATCAATTATTC-AGTAAAATCAGATATTCAGTAACAAT
1 TCAGTTATCCAGTAACAATCAATTATTCAAATAAAACCAGATATTCAGTAACAAT
63918881 TAAGTTATTC
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
61 20 0.43
62 26 0.57
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (62 bp):
TCAGTTATCCAGTAACAATCAATTATTCAAATAAAACCAGATATTCAGTAACAATCAATTGA
Found at i:63918959 original size:72 final size:72
Alignment explanation
Indices: 63918836--63918972 Score: 188
Period size: 72 Copynumber: 1.9 Consensus size: 72
63918826 ATCAGTTATC
63918836 CAGTAACAATCAATTATTCAGTAAAATCAGATATTCAGTAACAATTAAGTTATTCAGTAACAGTC
1 CAGTAACAATCAATTATTCAGTAAAATCAGATATTCAGTAACAATTAAGTTATTCAGTAACAGTC
63918901 ATTCATT
66 ATTCATT
* * * ** *
63918908 CAGTGACAATCAGTTATTCAGTAATGATCA-ATTATTCAGTAA-TGTTCAGTTATTCAGTAACAG
1 CAGTAACAATCAATTATTCAGTAA-AATCAGA-TATTCAGTAACAATTAAGTTATTCAGTAACAG
63918971 TC
64 TC
63918973 TAATATCCAG
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
72 43 0.75
73 14 0.25
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34
Consensus pattern (72 bp):
CAGTAACAATCAATTATTCAGTAAAATCAGATATTCAGTAACAATTAAGTTATTCAGTAACAGTC
ATTCATT
Found at i:63920876 original size:16 final size:16
Alignment explanation
Indices: 63920855--63920894 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
63920845 TTCTTTCTCC
63920855 TTTCTTTTTCTTTTT-G
1 TTTCTTTTT-TTTTTCG
63920871 TTTCTTTTTTTTTTCG
1 TTTCTTTTTTTTTTCG
63920887 TTTACTTT
1 TTT-CTTT
63920895 ACTATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.23
16 13 0.59
17 4 0.18
ACGTcount: A:0.03, C:0.12, G:0.05, T:0.80
Consensus pattern (16 bp):
TTTCTTTTTTTTTTCG
Found at i:63923437 original size:27 final size:26
Alignment explanation
Indices: 63923372--63923556 Score: 106
Period size: 27 Copynumber: 6.7 Consensus size: 26
63923362 TGGTGTCTAC
* *
63923372 GCCACAATTATCTGATCTAGTGGCTCT
1 GCCAC-ATTATCTGTTCTGGTGGCTCT
* *
63923399 GCCATATATATCCGTTCTGGTGGCTCT
1 GCCACAT-TATCTGTTCTGGTGGCTCT
*
63923426 GCCACGATTATCTGTATCTGGTGACTCT
1 GCCAC-ATTATCTGT-TCTGGTGGCTCT
* * **
63923454 GTCACATTATCTATTCTGGCAGC-CAT
1 GCCACATTATCTGTTCTGGTGGCTC-T
* *
63923480 GCTGCATATT-TCTGTGGC-GTGTAGAGCTCT
1 GC--CACATTATCTGT-TCTG-GT-G-GCTCT
*
63923510 GCCACGATTATCTGTATCTGGTGACTCT
1 GCCAC-ATTATCTGT-TCTGGTGGCTCT
* *
63923538 GTCACATTATCTATTCTGG
1 GCCACATTATCTGTTCTGG
63923557 CAGCCATGCT
Statistics
Matches: 120, Mismatches: 24, Indels: 29
0.69 0.14 0.17
Matches are distributed among these distances:
25 1 0.01
26 15 0.12
27 51 0.43
28 34 0.28
29 4 0.03
30 13 0.11
31 2 0.02
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
GCCACATTATCTGTTCTGGTGGCTCT
Found at i:63923517 original size:84 final size:84
Alignment explanation
Indices: 63923421--63923589 Score: 338
Period size: 84 Copynumber: 2.0 Consensus size: 84
63923411 CGTTCTGGTG
63923421 GCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACATTATCTATTCTGGCAGCCATGCTGCA
1 GCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACATTATCTATTCTGGCAGCCATGCTGCA
63923486 TATTTCTGTGGCGTGTAGA
66 TATTTCTGTGGCGTGTAGA
63923505 GCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACATTATCTATTCTGGCAGCCATGCTGCA
1 GCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACATTATCTATTCTGGCAGCCATGCTGCA
63923570 TATTTCTGTGGCGTGTAGA
66 TATTTCTGTGGCGTGTAGA
63923589 G
1 G
63923590 GTTGGGTGGG
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 85 1.00
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (84 bp):
GCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACATTATCTATTCTGGCAGCCATGCTGCA
TATTTCTGTGGCGTGTAGA
Found at i:63930816 original size:16 final size:15
Alignment explanation
Indices: 63930790--63930821 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
63930780 ACTAGATCGG
63930790 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
63930805 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
63930821 C
1 C
63930822 GGTATTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.28, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:63931341 original size:54 final size:54
Alignment explanation
Indices: 63931237--63931344 Score: 139
Period size: 54 Copynumber: 2.0 Consensus size: 54
63931227 AGGAAGCGTC
* * *
63931237 CTGGTGGCTACGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTACGCCACAATTATCTGATCTGCTGACTCTGCCACATATATCTGTT
* *
63931291 CTGGTGGCT-CTGCCACGATTATCTGTATCTGCTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTAC-GCCACAATTATCTG-ATCTGCTGACTCTGCCACATATATCTGTT
63931345 ATGGCAGCCA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 1 0.02
54 29 0.62
55 17 0.36
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTACGCCACAATTATCTGATCTGCTGACTCTGCCACATATATCTGTT
Found at i:63931343 original size:27 final size:27
Alignment explanation
Indices: 63931237--63931343 Score: 121
Period size: 27 Copynumber: 3.9 Consensus size: 27
63931227 AGGAAGCGTC
*
63931237 CTGGTGGCTAC-GCCACAATTATTTG-AT
1 CTGGTGGCT-CTGCCAC-ATTATCTGTAT
63931264 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
63931291 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* * *
63931319 CTGCTGACTCTGTCACATTATCTGT
1 CTGGTGGCTCTGCCACATTATCTGT
63931344 TATGGCAGCC
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
26 3 0.04
27 52 0.73
28 16 0.23
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:63936177 original size:18 final size:18
Alignment explanation
Indices: 63936154--63936436 Score: 180
Period size: 18 Copynumber: 15.3 Consensus size: 18
63936144 GAATAATTAT
* *
63936154 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAATCAA
*
63936172 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAA
* * *
63936190 TTATTCA-AATATAACCAA
1 TTATTCAGTA-ACAATCAA
* *
63936208 TTATTCAGTATCGATCAA
1 TTATTCAGTAACAATCAA
*
63936226 TTGATCGGTTATCCAGTAACAGTCAA
1 TT-A-----T-T-CAGTAACAATCAA
63936252 TTATTCAGTAA-AATCAGA
1 TTATTCAGTAACAATCA-A
*
63936270 -TATTCAGTAACAATTAA
1 TTATTCAGTAACAATCAA
* *
63936287 GTTATCCAGTAACAGTC-A
1 -TTATTCAGTAACAATCAA
** *
63936305 TTCATTCAGCGACAATCAG
1 TT-ATTCAGTAACAATCAA
**
63936324 TTATTCAGTAATGATCAA
1 TTATTCAGTAACAATCAA
* * * *
63936342 TTATTCAGTAATATTTAG
1 TTATTCAGTAACAATCAA
*
63936360 TTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAATC-AA
*
63936379 -TATCCAGTAACAATCAA
1 TTATTCAGTAACAATCAA
*
63936396 TTATCCAGTAACAATCAA
1 TTATTCAGTAACAATCAA
* *
63936414 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAATCAA
63936432 TTATT
1 TTATT
63936437 TTATACCTTT
Statistics
Matches: 204, Mismatches: 43, Indels: 36
0.72 0.15 0.13
Matches are distributed among these distances:
17 20 0.10
18 150 0.74
19 18 0.09
20 1 0.00
24 1 0.00
25 2 0.01
26 12 0.06
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:63936312 original size:54 final size:54
Alignment explanation
Indices: 63936234--63936436 Score: 214
Period size: 54 Copynumber: 3.8 Consensus size: 54
63936224 AATTGATCGG
*
63936234 TTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGATATTCAGTAACAATTAA
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATCAGATATTCAGTAACAATCAA
** * **
63936287 GTTATCCAGTAACAGTC-ATTCATTCAGCGACAATCAGTTATTCAGTAATGATCAA
1 -TTATCCAGTAACAGTCAATT-ATTCAGTAACAATCAGATATTCAGTAACAATCAA
* * * * * * *
63936342 TTATTCAGTAATATTTAGTTATTCAGTAACAGTCTA-ATATCCAGTAACAATCAA
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATC-AGATATTCAGTAACAATCAA
* * *
63936396 TTATCCAGTAACAATCAATTATTCAGTAATAATCAGTTATT
1 TTATCCAGTAACAGTCAATTATTCAGTAACAATCAGATATT
63936437 TTATACCTTT
Statistics
Matches: 117, Mismatches: 27, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
53 4 0.03
54 90 0.77
55 23 0.20
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.34
Consensus pattern (54 bp):
TTATCCAGTAACAGTCAATTATTCAGTAACAATCAGATATTCAGTAACAATCAA
Found at i:63936369 original size:72 final size:71
Alignment explanation
Indices: 63936235--63936436 Score: 219
Period size: 72 Copynumber: 2.8 Consensus size: 71
63936225 ATTGATCGGT
* * * *
63936235 TATCCAGTAACAGTCAATTATTCAGTAAAATCAGA-TATTCAGTAACAATTAAGTTATCCAGTAA
1 TATCCAGCAACAATCAATTATTCAGTAAAATCA-ATTATTCAGTAA-TATTAAGTTATTCAGTAA
*
63936299 CAGTC-AT
64 CAGTCTAA
* * * * *
63936306 TCATTCAGCGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAATATTTAGTTATTCAGTAA
1 T-ATCCAGCAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTAAGTTATTCAGTAA
63936371 CAGTCTAA
64 CAGTCTAA
* * * *
63936379 TATCCAGTAACAATCAATTATCCAGTAACAATCAATTATTCAGTAATAATCAGTTATT
1 TATCCAGCAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTAAGTTATT
63936437 TTATACCTTT
Statistics
Matches: 108, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
71 1 0.01
72 91 0.84
73 16 0.15
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.34
Consensus pattern (71 bp):
TATCCAGCAACAATCAATTATTCAGTAAAATCAATTATTCAGTAATATTAAGTTATTCAGTAACA
GTCTAA
Found at i:63936808 original size:16 final size:16
Alignment explanation
Indices: 63936779--63936812 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
63936769 TAATTCACTT
63936779 TTCAATTTTCAATTAA
1 TTCAATTTTCAATTAA
63936795 TTCATATTTT-AATTAA
1 TTCA-ATTTTCAATTAA
63936811 TT
1 TT
63936813 AACTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (16 bp):
TTCAATTTTCAATTAA
Found at i:63944636 original size:25 final size:25
Alignment explanation
Indices: 63944602--63944652 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
63944592 AGCTAACGAC
63944602 GTTAAACAATGGCGCTTAATGGGAG
1 GTTAAACAATGGCGCTTAATGGGAG
63944627 GTTAAACAATGGCGCTTAATGGGAG
1 GTTAAACAATGGCGCTTAATGGGAG
63944652 G
1 G
63944653 CAACCCATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.33, T:0.24
Consensus pattern (25 bp):
GTTAAACAATGGCGCTTAATGGGAG
Found at i:63947531 original size:28 final size:28
Alignment explanation
Indices: 63947499--63947553 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
63947489 CAAGGCTGAC
63947499 TTTT-ATCT-CTTGATTTCAATTTCAATCT
1 TTTTAATCTACTTG-TTT-AATTTCAATCT
*
63947527 TTTTAATTTACTTGTTTAATTTCAATC
1 TTTTAATCTACTTGTTTAATTTCAATC
63947554 ATTTACTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 14 0.58
29 6 0.25
30 4 0.17
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTAATCTACTTGTTTAATTTCAATCT
Found at i:63959800 original size:48 final size:48
Alignment explanation
Indices: 63959747--63959943 Score: 184
Period size: 48 Copynumber: 4.1 Consensus size: 48
63959737 TTACACGAAG
* * * *
63959747 TCTCATAACGGTGCCGATGCCATGTCCAAGACATGGTCTTATACGGGG
1 TCTCATAACGATGCCGATGCCATATCCAAGATATGGTCTTATACGGGA
* * * * * * * *
63959795 CCTCATATCGATGCCAATGCCATATCCCAGTTATGGTTTTACATGGGA
1 TCTCATAACGATGCCGATGCCATATCCAAGATATGGTCTTATACGGGA
* * *
63959843 TTTCA-GACTGATGCCGATGCCATGTCCAAGA-AGTGGTCTTATACGGGA
1 TCTCATAAC-GATGCCGATGCCATATCCAAGATA-TGGTCTTATACGGGA
* * *
63959891 TCTCTTATCGATGCTGATGCCATATCCCAA-ATATGGTCTTATACGGGA
1 TCTCATAACGATGCCGATGCCATAT-CCAAGATATGGTCTTATACGGGA
63959939 TCTCA
1 TCTCA
63959944 ATACTCACAT
Statistics
Matches: 114, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
47 2 0.02
48 106 0.93
49 6 0.05
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (48 bp):
TCTCATAACGATGCCGATGCCATATCCAAGATATGGTCTTATACGGGA
Found at i:63959939 original size:96 final size:96
Alignment explanation
Indices: 63959758--63959939 Score: 258
Period size: 96 Copynumber: 1.9 Consensus size: 96
63959748 CTCATAACGG
*
63959758 TGCCGATGCCATGTCCAAGACATGGTCTTATACGGGGCCTCATATCGATGCCAATGCCATATCCC
1 TGCCGATGCCATGTCCAAGACATGGTCTTATACGGGACCTCATATCGATGCCAATGCCATATCCC
** * *
63959823 AGTTATGGTTTTACATGGGATTTCAGACTGA
66 AAATATGGTCTTACACGGGATTTCAGACTGA
* * **
63959854 TGCCGATGCCATGTCCAAGA-AGTGGTCTTATACGGGATCTCTTATCGATGCTGATGCCATATCC
1 TGCCGATGCCATGTCCAAGACA-TGGTCTTATACGGGACCTCATATCGATGCCAATGCCATATCC
*
63959918 CAAATATGGTCTTATACGGGAT
65 CAAATATGGTCTTACACGGGAT
63959940 CTCAATACTC
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
95 1 0.01
96 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (96 bp):
TGCCGATGCCATGTCCAAGACATGGTCTTATACGGGACCTCATATCGATGCCAATGCCATATCCC
AAATATGGTCTTACACGGGATTTCAGACTGA
Found at i:63963016 original size:32 final size:33
Alignment explanation
Indices: 63962966--63963049 Score: 97
Period size: 32 Copynumber: 2.6 Consensus size: 33
63962956 ATAAAAATTA
63962966 TATTTAAAA-TA-AATAAATGAAA-ATAAATATCT
1 TATTTAAAATTATAATAAATGAAACAT--ATATCT
*
63962998 T-TTTAAAATTATAA-AAATGAAACATATATTT
1 TATTTAAAATTATAATAAATGAAACATATATCT
63963029 TATTTAAAATTATTAATAAAT
1 TATTTAAAATTA-TAATAAAT
63963050 AGAAGTTGAG
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
31 13 0.29
32 21 0.47
33 7 0.16
34 4 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (33 bp):
TATTTAAAATTATAATAAATGAAACATATATCT
Found at i:63967431 original size:24 final size:24
Alignment explanation
Indices: 63967402--63967450 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
63967392 TCCGAGCTCG
63967402 TTGAGTTGAGTCCGAGTTCACTTA
1 TTGAGTTGAGTCCGAGTTCACTTA
63967426 TTGAGTTGAGTCCGAGTTCACTTA
1 TTGAGTTGAGTCCGAGTTCACTTA
63967450 T
1 T
63967451 GGATGCGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.39
Consensus pattern (24 bp):
TTGAGTTGAGTCCGAGTTCACTTA
Found at i:63968915 original size:28 final size:28
Alignment explanation
Indices: 63968861--63968921 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
63968851 ATTTTATTTA
*
63968861 AAATAAATGTATAATTTTTCTCCAAAAT
1 AAATAAATGTATAATTTTTCTCAAAAAT
*
63968889 AAATAAATGTATAATTTTAT-TTAAAAAT
1 AAATAAATGTATAATTTT-TCTCAAAAAT
63968917 AAATA
1 AAATA
63968922 TTTTAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 29 0.97
29 1 0.03
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.39
Consensus pattern (28 bp):
AAATAAATGTATAATTTTTCTCAAAAAT
Found at i:63968920 original size:24 final size:24
Alignment explanation
Indices: 63968848--63968920 Score: 78
Period size: 28 Copynumber: 2.9 Consensus size: 24
63968838 TGAATAAAAA
63968848 ATAATTTTATTT-AAAATAAATGT
1 ATAATTTTATTTAAAAATAAATGT
*
63968871 ATAATTTT-TCTCCAAAATAAATAAATGT
1 ATAATTTTAT-T---TAA-AAATAAATGT
63968899 ATAATTTTATTTAAAAATAAAT
1 ATAATTTTATTTAAAAATAAAT
63968921 ATTTTAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
22 1 0.02
23 9 0.22
24 8 0.20
25 2 0.05
27 1 0.02
28 19 0.46
29 1 0.02
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (24 bp):
ATAATTTTATTTAAAAATAAATGT
Found at i:63972836 original size:11 final size:11
Alignment explanation
Indices: 63972820--63972844 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63972810 GAAGTCAAAA
63972820 ATTATTATTTT
1 ATTATTATTTT
63972831 ATTATTATTTT
1 ATTATTATTTT
63972842 ATT
1 ATT
63972845 TTCTATAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:63974068 original size:17 final size:17
Alignment explanation
Indices: 63974046--63974078 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
63974036 TGTTTTATAT
*
63974046 TGAATTATTATGAATTG
1 TGAATTATTATAAATTG
63974063 TGAATTATTATAAATT
1 TGAATTATTATAAATT
63974079 TACATGATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (17 bp):
TGAATTATTATAAATTG
Found at i:63984002 original size:42 final size:43
Alignment explanation
Indices: 63983904--63984024 Score: 140
Period size: 42 Copynumber: 2.8 Consensus size: 43
63983894 AACAAGTACA
* * *
63983904 ATGCCGATGTCCCGGAC-GTGGTCTTACATGTAACTCAATATCG
1 ATGCCGATGTCCCAGACAG-GGTCTTACACGTAAATCAATATCG
**
63983947 ATGCCTCTGTCCCAGACAGGGTCTTACACG-AAATCAGATA-CG
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATCA-ATATCG
* *
63983989 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATC
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATC
63984025 TCAATCGAGG
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
42 33 0.50
43 32 0.48
44 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATCAATATCG
Found at i:63984055 original size:85 final size:85
Alignment explanation
Indices: 63983904--63984062 Score: 205
Period size: 85 Copynumber: 1.9 Consensus size: 85
63983894 AACAAGTACA
* * * * *
63983904 ATGCCGATGTCCCGGACGTGGTCTTACATGTAACTCAATATCGATGCCTCTGTCCCAGACAGGGT
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAACTCAATATCGAGGCCTCTGTCCCAGACACGGT
63983969 CTTACACGAAATCAGATACG
66 CTTACACGAAATCAGATACG
* * * *
63983989 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTC-A-ATCGAGGCCTGTGTTCCAGGCACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGT-AA-CTCAATATCGAGGCCTCTGTCCCAGACACG
63984052 GTCTTACACGA
64 GTCTTACACGA
63984063 TGTCTCAGAC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
85 57 0.90
86 3 0.05
87 3 0.05
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (85 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGTAACTCAATATCGAGGCCTCTGTCCCAGACACGGT
CTTACACGAAATCAGATACG
Found at i:63991224 original size:43 final size:43
Alignment explanation
Indices: 63991177--63991277 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 43
63991167 CCCAGACGTA
* **
63991177 GTCTTACATGTAACTCA-ATATTGATGCCTCTGT-CTCAGACAGG
1 GTCTTACATGTAAATCAGATA-TGATGCCGATGTCCT-AGACAGG
* *
63991220 GTCTTACACG-AAATCAGATATGATGCCGATGTCCTAGACATG
1 GTCTTACATGTAAATCAGATATGATGCCGATGTCCTAGACAGG
*
63991262 GTCTTATATGTAAATC
1 GTCTTACATGTAAATC
63991278 TCAATCGAGG
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
42 29 0.60
43 19 0.40
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (43 bp):
GTCTTACATGTAAATCAGATATGATGCCGATGTCCTAGACAGG
Found at i:63994918 original size:35 final size:35
Alignment explanation
Indices: 63994872--63994955 Score: 105
Period size: 35 Copynumber: 2.4 Consensus size: 35
63994862 ACATTTGTCG
* * * *
63994872 GTTTATTCGACTAGCACTGGGCACAACTTCCATTA
1 GTTTATCCGACTAGCACTAGACACAACTTCCATGA
**
63994907 GTTTATCCGACTAGCACTAGACACAACTTTTATGA
1 GTTTATCCGACTAGCACTAGACACAACTTCCATGA
*
63994942 GTTTATCTGACTAG
1 GTTTATCCGACTAG
63994956 TGCTAGGAAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (35 bp):
GTTTATCCGACTAGCACTAGACACAACTTCCATGA
Found at i:63996448 original size:24 final size:24
Alignment explanation
Indices: 63996408--63996474 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
63996398 TACACCATGT
*
63996408 GTGTCACATGGCCGTGTGACAGCTC
1 GTGTCCCA-GGCCGTGTGACAGCTC
63996433 GTGTCCCAGGCCGTGTGACAGCTC
1 GTGTCCCAGGCCGTGTGACAGCTC
* *
63996457 GTATCCCAGGCCATGTGA
1 GTGTCCCAGGCCGTGTGA
63996475 TCCATAAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 32 0.82
25 7 0.18
ACGTcount: A:0.16, C:0.30, G:0.31, T:0.22
Consensus pattern (24 bp):
GTGTCCCAGGCCGTGTGACAGCTC
Found at i:63998132 original size:40 final size:39
Alignment explanation
Indices: 63998066--63998202 Score: 157
Period size: 39 Copynumber: 3.5 Consensus size: 39
63998056 AAAGCCTTCA
* * ** * *
63998066 GAACTTTAAGCCCGGATATATTTCCAGCACGTAACCTAC
1 GAACCTTAAGTCCGGATATATTTCCAGCATATAGCCTGC
** * *
63998105 GAACCTTAAGTCCGGATTATAACTCCAGTATATAGCCTGT
1 GAACCTTAAGTCCGGA-TATATTTCCAGCATATAGCCTGC
*
63998145 GGACCTTAAGTCCGGATATATTTCCAGCATATAGCCTGC
1 GAACCTTAAGTCCGGATATATTTCCAGCATATAGCCTGC
*
63998184 GGACCTTAAGTCCGGATAT
1 GAACCTTAAGTCCGGATAT
63998203 TTCCAAATAT
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 52 0.63
40 30 0.37
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (39 bp):
GAACCTTAAGTCCGGATATATTTCCAGCATATAGCCTGC
Found at i:64002560 original size:43 final size:43
Alignment explanation
Indices: 64002499--64002584 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
64002489 CTTCTCTCCA
*
64002499 AATTCTCTTAGCCTTTTCCATTTCCTACACCTAGCATCATCTC
1 AATTCTCTTAGCCTTTTCCATTCCCTACACCTAGCATCATCTC
64002542 AATTCTCTTAGCCTTTTCCATTCCCTACACCTAGCATCATCTC
1 AATTCTCTTAGCCTTTTCCATTCCCTACACCTAGCATCATCTC
64002585 TTCATAGAGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.21, C:0.36, G:0.05, T:0.38
Consensus pattern (43 bp):
AATTCTCTTAGCCTTTTCCATTCCCTACACCTAGCATCATCTC
Found at i:64005523 original size:43 final size:42
Alignment explanation
Indices: 64005457--64005572 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 42
64005447 AGCTCATACA
* * * * *
64005457 ATGCCAACATCCTAAACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAGATGTGGTCTTACATGAAATCAAATA-AG
64005500 ATGCC-ACTATCCCAGATAG-GGTCTTACATGAAATCAAATAAG
1 ATGCCAAC-ATCCCAGAT-GTGGTCTTACATGAAATCAAATAAG
*
64005542 ATGCCAACGTCCCAGATGTGGTCTTACATGA
1 ATGCCAACATCCCAGATGTGGTCTTACATGA
64005573 TAACACATAC
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
41 1 0.02
42 28 0.44
43 33 0.52
44 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGCCAACATCCCAGATGTGGTCTTACATGAAATCAAATAAG
Found at i:64005558 original size:42 final size:43
Alignment explanation
Indices: 64005474--64005572 Score: 132
Period size: 42 Copynumber: 2.3 Consensus size: 43
64005464 CATCCTAAAC
* *
64005474 GTGGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGAT
1 GTGGTCTTACATGAAATCAAATATAGATGCCACTATCCCAGAT
*
64005517 AG-GGTCTTACATGAAATCAAATA-AGATGCCAAC-GTCCCAGAT
1 -GTGGTCTTACATGAAATCAAATATAGATGCC-ACTATCCCAGAT
64005559 GTGGTCTTACATGA
1 GTGGTCTTACATGA
64005573 TAACACATAC
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
41 1 0.02
42 26 0.52
43 22 0.44
44 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (43 bp):
GTGGTCTTACATGAAATCAAATATAGATGCCACTATCCCAGAT
Found at i:64006679 original size:13 final size:13
Alignment explanation
Indices: 64006661--64006687 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
64006651 CACAAATGAT
64006661 AAAATTTTCACAC
1 AAAATTTTCACAC
64006674 AAAATTTTCACAC
1 AAAATTTTCACAC
64006687 A
1 A
64006688 TGTCATTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:64008691 original size:40 final size:40
Alignment explanation
Indices: 64008631--64008706 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
64008621 TTATTTTTAC
*
64008631 TGCTGATTTCATTGTTTTAGATTTTGAAGCAGATAAGGAA
1 TGCTGATTTCATTGTCTTAGATTTTGAAGCAGATAAGGAA
*
64008671 TGCTGATTTCATTGTCTTAGATTTTTAAGCAGATAA
1 TGCTGATTTCATTGTCTTAGATTTTGAAGCAGATAA
64008707 AGAAGTGACG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (40 bp):
TGCTGATTTCATTGTCTTAGATTTTGAAGCAGATAAGGAA
Found at i:64008978 original size:41 final size:43
Alignment explanation
Indices: 64008922--64009004 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 43
64008912 GAAGATCTAT
*
64008922 TGGAGAAAGCCTTAGACCTTGACCCTTTAGAGGATGAAGAAGA
1 TGGAGAAAGCCTTAGACCTTGACCCTTTAGAGGATAAAGAAGA
* * *
64008965 TGGAG-AA-CCTTAGATCTTGGCCCTTTGGAGGATAAAGAAG
1 TGGAGAAAGCCTTAGACCTTGACCCTTTAGAGGATAAAGAAG
64009005 GTGAAAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
41 29 0.81
42 2 0.06
43 5 0.14
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.23
Consensus pattern (43 bp):
TGGAGAAAGCCTTAGACCTTGACCCTTTAGAGGATAAAGAAGA
Found at i:64016462 original size:37 final size:37
Alignment explanation
Indices: 64016421--64016494 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
64016411 AGAAGGTAAA
64016421 GAATTACTCCAAGGAAGCCATTGATCCATCTCAGAAG
1 GAATTACTCCAAGGAAGCCATTGATCCATCTCAGAAG
*
64016458 GAATTACTCCAAGGAAGCCATTGATCCATCTTAGAAG
1 GAATTACTCCAAGGAAGCCATTGATCCATCTCAGAAG
64016495 CTGGATCTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (37 bp):
GAATTACTCCAAGGAAGCCATTGATCCATCTCAGAAG
Found at i:64022637 original size:6 final size:6
Alignment explanation
Indices: 64022626--64022663 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
64022616 TCCTCCTATC
**
64022626 TTTTTA TTTTTA TTTTTA TTTTTA TTTCAA TTTTTA TT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TT
64022664 CTCTTTTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:64036062 original size:42 final size:42
Alignment explanation
Indices: 64036010--64036089 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
64036000 AAAAACGTCG
* * *
64036010 TGACCTTTAGCGGCGCTTTCCCTAAAAACGCCGCTAAAAAAA
1 TGACCTTTAGCGACGCTTTCCCCAAAAACGCCACTAAAAAAA
64036052 TGACCTTTAGCGACGCTTTCCCCAAAAACGCCACTAAA
1 TGACCTTTAGCGACGCTTTCCCCAAAAACGCCACTAAA
64036090 GACCATATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.33, C:0.31, G:0.15, T:0.21
Consensus pattern (42 bp):
TGACCTTTAGCGACGCTTTCCCCAAAAACGCCACTAAAAAAA
Found at i:64038562 original size:40 final size:40
Alignment explanation
Indices: 64038507--64038733 Score: 391
Period size: 40 Copynumber: 5.7 Consensus size: 40
64038497 AACATTGGAT
64038507 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
64038547 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
64038587 TGTATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
** *
64038627 TATATCCGGGCTGTGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
64038667 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
64038707 TATATCCGGGTTATGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
64038734 ATGTGTTTGT
Statistics
Matches: 175, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 175 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:64042294 original size:30 final size:30
Alignment explanation
Indices: 64042258--64042322 Score: 130
Period size: 30 Copynumber: 2.2 Consensus size: 30
64042248 CACTCTTAAA
64042258 GATAAGAACAGTAAATAAAGATTTGGAAAT
1 GATAAGAACAGTAAATAAAGATTTGGAAAT
64042288 GATAAGAACAGTAAATAAAGATTTGGAAAT
1 GATAAGAACAGTAAATAAAGATTTGGAAAT
64042318 GATAA
1 GATAA
64042323 ATTCTGTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.54, C:0.03, G:0.20, T:0.23
Consensus pattern (30 bp):
GATAAGAACAGTAAATAAAGATTTGGAAAT
Found at i:64045395 original size:12 final size:12
Alignment explanation
Indices: 64045378--64045402 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64045368 ACACTTATTT
64045378 AAAAACAAAAAA
1 AAAAACAAAAAA
64045390 AAAAACAAAAAA
1 AAAAACAAAAAA
64045402 A
1 A
64045403 GAGTTGCAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAACAAAAAA
Found at i:64046002 original size:16 final size:16
Alignment explanation
Indices: 64045978--64046049 Score: 55
Period size: 16 Copynumber: 4.7 Consensus size: 16
64045968 CATATGATGT
*
64045978 TTTTTGGGGTTTAGGG
1 TTTTAGGGGTTTAGGG
*
64045994 TTTTAGGGGTCATA--G
1 TTTTAGGGGT-TTAGGG
*
64046009 -TTTA-GTGTTTAAGGG
1 TTTTAGGGGTTT-AGGG
*
64046024 -TTTAGGGGTTTAGTG
1 TTTTAGGGGTTTAGGG
64046039 TTTTAGGGGTT
1 TTTTAGGGGTT
64046050 ATAGATTAGT
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
12 1 0.02
13 4 0.09
14 4 0.09
15 9 0.20
16 24 0.55
17 2 0.05
ACGTcount: A:0.14, C:0.01, G:0.38, T:0.47
Consensus pattern (16 bp):
TTTTAGGGGTTTAGGG
Found at i:64046018 original size:22 final size:22
Alignment explanation
Indices: 64045986--64046063 Score: 84
Period size: 22 Copynumber: 3.5 Consensus size: 22
64045976 GTTTTTTGGG
* *
64045986 GTTTAGGGTTTTAGGGGTCATA
1 GTTTAGTGTTTTAGGGGTTATA
* * **
64046008 GTTTAGTGTTTAAGGGTTTAGGG
1 GTTTAGTGTTTTAGGGGTTA-TA
64046031 GTTTAGTGTTTTAGGGGTTATA
1 GTTTAGTGTTTTAGGGGTTATA
*
64046053 GATTAGTGTTT
1 GTTTAGTGTTT
64046064 ATTATTTTTG
Statistics
Matches: 44, Mismatches: 11, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
22 26 0.59
23 18 0.41
ACGTcount: A:0.18, C:0.01, G:0.35, T:0.46
Consensus pattern (22 bp):
GTTTAGTGTTTTAGGGGTTATA
Found at i:64046097 original size:46 final size:45
Alignment explanation
Indices: 64045976--64046098 Score: 149
Period size: 45 Copynumber: 2.7 Consensus size: 45
64045966 TCCATATGAT
* * *
64045976 GTTTTTTGGGGTTTAGGGTTTTAGGGGTCATAGTTTAGTGTTTAA
1 GTTTTTAGGGGTTTAGGGTTTTAGGGGTTATAGATTAGTGTTTAA
** *
64046021 GGGTTTAGGGGTTTAGTGTTTTAGGGGTTATAGATTAGTGTTTATTA
1 GTTTTTAGGGGTTTAGGGTTTTAGGGGTTATAGATTAGTGTTTA--A
* *
64046068 -TTTTTGGGGGTTTAGGGTTTTAGGAGTTATA
1 GTTTTTAGGGGTTTAGGGTTTTAGGGGTTATA
64046099 TGACTTTTAG
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
45 38 0.58
46 26 0.40
47 1 0.02
ACGTcount: A:0.17, C:0.01, G:0.34, T:0.48
Consensus pattern (45 bp):
GTTTTTAGGGGTTTAGGGTTTTAGGGGTTATAGATTAGTGTTTAA
Found at i:64046160 original size:41 final size:40
Alignment explanation
Indices: 64046103--64046239 Score: 132
Period size: 41 Copynumber: 3.4 Consensus size: 40
64046093 GTTATATGAC
*
64046103 TTTTAGCAGCGTTTTACCAACAGCGCCGCTAATGCTCTAGT
1 TTTTAGCGGCGTTTTACCAA-AGCGCCGCTAATGCTCTAGT
* * * *
64046144 TTTTAGCGGCGTTTTACCGAAAGTGCAGCTAATGTTGTAGT
1 TTTTAGCGGCGTTTTACC-AAAGCGCCGCTAATGCTCTAGT
* *** * *
64046185 TTTTAGCGGTGTTTTTGGTAAAACGCCGCTATTGCTCT-GT
1 TTTTAGCGGCG-TTTTACCAAAGCGCCGCTAATGCTCTAGT
*
64046225 TTTTAGCGGCATTTT
1 TTTTAGCGGCGTTTT
64046240 TGGTAAAACA
Statistics
Matches: 77, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
39 4 0.05
40 11 0.14
41 56 0.73
42 6 0.08
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAGCGCCGCTAATGCTCTAGT
Found at i:64046240 original size:40 final size:40
Alignment explanation
Indices: 64046183--64046270 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
64046173 TAATGTTGTA
** *
64046183 GTTTTTAGCGGTGTTTTTGGTAAAACGCCGCTATTGCTCT
1 GTTTTTAGCGGCATTTTTGGTAAAACACCGCTATTGCTCT
64046223 GTTTTTAGCGGCATTTTTGGTAAAACACCGCTATTGCTCT
1 GTTTTTAGCGGCATTTTTGGTAAAACACCGCTATTGCTCT
64046263 GTGTTTTA
1 GT-TTTTA
64046271 CAATTTTTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
40 39 0.89
41 5 0.11
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (40 bp):
GTTTTTAGCGGCATTTTTGGTAAAACACCGCTATTGCTCT
Found at i:64050314 original size:39 final size:39
Alignment explanation
Indices: 64050203--64050332 Score: 170
Period size: 40 Copynumber: 3.3 Consensus size: 39
64050193 GGACTAAGAT
* * *
64050203 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
**
64050243 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
64050283 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
64050322 CCGAAGGCATT
1 CCGAAGGCATT
64050333 TGAACGAGGA
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 37 0.47
40 42 0.53
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:64050352 original size:79 final size:79
Alignment explanation
Indices: 64050203--64050367 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
64050193 GGACTAAGAT
* * * ** ** *
64050203 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
**
64050268 AATCCGGGTTATGTC
66 AATCC-GGTTAAATC
* * * *
64050283 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
64050347 TATCCGGTTAAATC
66 AATCCGGTTAAATC
64050361 CCGAAGG
1 CCGAAGG
64050368 TACGTGATTT
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
78 14 0.20
79 49 0.70
80 7 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGTTAAATC
Found at i:64053105 original size:39 final size:39
Alignment explanation
Indices: 64052994--64053123 Score: 170
Period size: 40 Copynumber: 3.3 Consensus size: 39
64052984 GGACTAAGAT
* * *
64052994 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
**
64053034 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
64053074 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
64053113 CCGAAGGCATT
1 CCGAAGGCATT
64053124 TGAACGAGGA
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 37 0.47
40 42 0.53
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:64053143 original size:79 final size:79
Alignment explanation
Indices: 64052994--64053158 Score: 179
Period size: 79 Copynumber: 2.1 Consensus size: 79
64052984 GGACTAAGAT
* * * ** ** *
64052994 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
**
64053059 AATCCGGGTTATGTC
66 AATCC-GGTTAAATC
* * * *
64053074 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
64053138 TATCCGGTTAAATC
66 AATCCGGTTAAATC
64053152 CCGAAGG
1 CCGAAGG
64053159 TACGTGATTT
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
78 14 0.20
79 49 0.70
80 7 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGTTAAATC
Found at i:64056967 original size:7 final size:7
Alignment explanation
Indices: 64056944--64056994 Score: 75
Period size: 7 Copynumber: 7.1 Consensus size: 7
64056934 AAATATGACC
64056944 CCTTCATT
1 CCTTCA-T
*
64056952 CCCTCAT
1 CCTTCAT
*
64056959 CCATCAT
1 CCTTCAT
64056966 CCTTCAT
1 CCTTCAT
64056973 CCTTCAT
1 CCTTCAT
64056980 CCTTCAT
1 CCTTCAT
64056987 CCTTCAT
1 CCTTCAT
64056994 C
1 C
64056995 ATTCTCTCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
7 35 0.88
8 5 0.12
ACGTcount: A:0.16, C:0.45, G:0.00, T:0.39
Consensus pattern (7 bp):
CCTTCAT
Found at i:64057546 original size:56 final size:56
Alignment explanation
Indices: 64057460--64057579 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
64057450 ACAAGGGATG
64057460 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
64057516 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGG
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
64057572 ATGGGCAA
1 ATGGGCAA
64057580 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.45, C:0.08, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:64058859 original size:40 final size:40
Alignment explanation
Indices: 64058707--64058852 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
64058697 TCGAATGATG
* * * *
64058707 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
64058747 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64058787 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64058828 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64058853 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 1 0.01
40 82 0.88
41 10 0.11
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64058859 original size:80 final size:80
Alignment explanation
Indices: 64058707--64058885 Score: 195
Period size: 80 Copynumber: 2.2 Consensus size: 80
64058697 TCGAATGATG
* *
64058707 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
64058772 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * * *
64058787 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
64058850 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
* *
64058867 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
64058886 TATGTGATTT
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
79 17 0.20
80 60 0.71
81 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:64062274 original size:19 final size:19
Alignment explanation
Indices: 64062237--64062275 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
64062227 CGTTTACGTC
*
64062237 AATTATTTAAATATTAATT
1 AATTATTTAAATATAAATT
64062256 AATTATTCTAAAT-TAAATT
1 AATTATT-TAAATATAAATT
64062275 A
1 A
64062276 TCTTTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
AATTATTTAAATATAAATT
Found at i:64062472 original size:5 final size:5
Alignment explanation
Indices: 64062462--64062486 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
64062452 TATATAATCA
64062462 ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT
64062487 TATTTTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:64062916 original size:16 final size:16
Alignment explanation
Indices: 64062844--64062916 Score: 83
Period size: 16 Copynumber: 4.6 Consensus size: 16
64062834 ACGTTTAGTT
64062844 GGCTGTAATGGAATAG
1 GGCTGTAATGGAATAG
* **
64062860 GGTTGTAATTAAATAG
1 GGCTGTAATGGAATAG
* *
64062876 TGTTGTAATGGAATAG
1 GGCTGTAATGGAATAG
*
64062892 GGCTATAATGGAATAG
1 GGCTGTAATGGAATAG
*
64062908 AGCTGTAAT
1 GGCTGTAAT
64062917 AAGTAATTCA
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.34, C:0.04, G:0.30, T:0.32
Consensus pattern (16 bp):
GGCTGTAATGGAATAG
Found at i:64062960 original size:46 final size:44
Alignment explanation
Indices: 64062898--64062991 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
64062888 ATAGGGCTAT
*
64062898 AATGGAATAGAGCTGTAATAAGTAATTCAACTATTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AGT-ATTCAACTATTTGGTTGAATGG
*** *
64062944 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCAACTATTTGGTTGAATGG
64062988 AATG
1 AATG
64062992 ATGTTGTAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 22 0.51
45 3 0.07
46 18 0.42
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCAACTATTTGGTTGAATGG
Found at i:64073510 original size:10 final size:10
Alignment explanation
Indices: 64073497--64073598 Score: 65
Period size: 10 Copynumber: 10.7 Consensus size: 10
64073487 AATGATAAAA
64073497 AATAAAAATT
1 AATAAAAATT
64073507 AATAAAAATT
1 AATAAAAATT
*
64073517 -ATACAAATT
1 AATAAAAATT
* **
64073526 ATTAAATCTT
1 AATAAAAATT
64073536 AATAAAAA-T
1 AATAAAAATT
64073545 -ATAAAAA-T
1 AATAAAAATT
* *
64073553 ATTTAAAATT
1 AATAAAAATT
*
64073563 AGAAAAAAATT
1 A-ATAAAAATT
64073574 -ATAAAAA-T
1 AATAAAAATT
*
64073582 CATAAAAAATT
1 AAT-AAAAATT
64073593 -ATAAAA
1 AATAAAA
64073599 TTTTATGAAG
Statistics
Matches: 71, Mismatches: 14, Indels: 15
0.71 0.14 0.15
Matches are distributed among these distances:
8 9 0.13
9 26 0.37
10 29 0.41
11 7 0.10
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (10 bp):
AATAAAAATT
Found at i:64073526 original size:19 final size:18
Alignment explanation
Indices: 64073491--64073600 Score: 80
Period size: 19 Copynumber: 5.9 Consensus size: 18
64073481 ATGAAAAATG
*
64073491 ATAAAAAATA-AAAATTA
1 ATAAAAATTATAAAATTA
64073508 ATAAAAATTATACAAATTA
1 ATAAAAATTATA-AAATTA
* ** *
64073527 TTAAATCTTAATAAAAAT-
1 ATAAAAATT-ATAAAATTA
*
64073545 ATAAAAATATTTAAAATTA
1 ATAAAAAT-TATAAAATTA
* * *
64073564 GAAAAAAATTATAAAAATC
1 -ATAAAAATTATAAAATTA
64073583 ATAAAAAATTATAAAATT
1 AT-AAAAATTATAAAATT
64073601 TTATGAAGTT
Statistics
Matches: 70, Mismatches: 16, Indels: 12
0.71 0.16 0.12
Matches are distributed among these distances:
17 9 0.13
18 13 0.19
19 38 0.54
20 10 0.14
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (18 bp):
ATAAAAATTATAAAATTA
Found at i:64073561 original size:29 final size:29
Alignment explanation
Indices: 64073505--64073581 Score: 88
Period size: 28 Copynumber: 2.7 Consensus size: 29
64073495 AAAATAAAAA
*
64073505 TTAATAAAAATTATACAAATTATTAAATC
1 TTAATAAAAATTATAAAAATTATTAAATC
*
64073534 TTAATAAAAA-TATAAAAA-TATTTAAA-A
1 TTAATAAAAATTATAAAAATTA-TTAAATC
*
64073561 TTAGAAAAAAATTATAAAAAT
1 TTA-ATAAAAATTATAAAAAT
64073582 CATAAAAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
27 5 0.12
28 18 0.44
29 18 0.44
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (29 bp):
TTAATAAAAATTATAAAAATTATTAAATC
Found at i:64073579 original size:9 final size:9
Alignment explanation
Indices: 64073484--64073598 Score: 76
Period size: 9 Copynumber: 12.4 Consensus size: 9
64073474 ACATGTAATG
*
64073484 AAAAATGAT
1 AAAAATTAT
64073493 AAAAA--AT
1 AAAAATTAT
64073500 AAAAATTAAT
1 AAAAATT-AT
64073510 AAAAATTAT
1 AAAAATTAT
*
64073519 ACAAATTATT
1 AAAAATTA-T
**
64073529 AAATCTTAAT
1 AAAAATT-AT
64073539 AAAAA-TAT
1 AAAAATTAT
64073547 AAAAA-TATT
1 AAAAATTA-T
* *
64073556 TAAAATTAGAA
1 AAAAATT--AT
64073567 AAAAATTAT
1 AAAAATTAT
*
64073576 AAAAATCAT
1 AAAAATTAT
64073585 AAAAAATTAT
1 -AAAAATTAT
64073595 AAAA
1 AAAA
64073599 TTTTATGAAG
Statistics
Matches: 84, Mismatches: 12, Indels: 20
0.72 0.10 0.17
Matches are distributed among these distances:
7 7 0.08
8 9 0.11
9 33 0.39
10 27 0.32
11 7 0.08
12 1 0.01
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.29
Consensus pattern (9 bp):
AAAAATTAT
Found at i:64074007 original size:4 final size:4
Alignment explanation
Indices: 64073998--64074095 Score: 160
Period size: 4 Copynumber: 24.0 Consensus size: 4
64073988 TTATAGTGAA
* *
64073998 TATG TATG TATG TATA TATG TATG TATG TATG TATG CATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
64074046 TATG TGCATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG T--ATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
64074096 GACTTTAAAA
Statistics
Matches: 88, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
4 84 0.95
6 4 0.05
ACGTcount: A:0.26, C:0.02, G:0.24, T:0.48
Consensus pattern (4 bp):
TATG
Found at i:64076159 original size:48 final size:47
Alignment explanation
Indices: 64076046--64076211 Score: 185
Period size: 48 Copynumber: 3.5 Consensus size: 47
64076036 TATGTGTGCT
* *
64076046 AGTGTAAGACATGTCTGGGACATGCATCAGC-CACAG-CA-TGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTCA-AGATATTCA-AGCC
* * *
64076092 AGTGTAAGACATGTCTGGGACACGCATCGGCTTCAAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC-TCAAGATATTCAAGCC
** * *
64076140 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CTCAAGATATTCAAGCC
*
64076188 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
64076212 ACGTCAACTT
Statistics
Matches: 103, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
46 29 0.28
47 2 0.02
48 69 0.67
49 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTCAAGATATTCAAGCC
Found at i:64079856 original size:23 final size:23
Alignment explanation
Indices: 64079746--64079856 Score: 66
Period size: 23 Copynumber: 4.6 Consensus size: 23
64079736 TGGCTATCTA
64079746 GAGCTTCCCGTTACATGGCTCTTTGT
1 GAGCTTCCCGTT--ATGG-TCTTTGT
* **
64079772 GAGCTTCCCGATA-GGCTCTTCAT
1 GAGCTTCCCGTTATGG-TCTTTGT
** *
64079795 GAGCTTCTTGATATGGTTCTTTGT
1 GAGCTTCCCGTTATGG-TCTTTGT
*
64079819 GA-ATTACCCGATTATGG-CTTTGAT
1 GAGCTT-CCCG-TTATGGTCTTTG-T
64079843 GAGCTTCCCGTTAT
1 GAGCTTCCCGTTAT
64079857 ATAGCCCGAA
Statistics
Matches: 67, Mismatches: 13, Indels: 13
0.72 0.14 0.14
Matches are distributed among these distances:
23 30 0.45
24 19 0.28
25 7 0.10
26 11 0.16
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.39
Consensus pattern (23 bp):
GAGCTTCCCGTTATGGTCTTTGT
Found at i:64081270 original size:27 final size:27
Alignment explanation
Indices: 64081240--64081417 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
64081230 ATATTGAGCC
* *
64081240 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
64081267 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
64081294 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
64081322 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
64081349 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
64081376 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
64081403 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
64081418 GTACAATTTA
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 102 0.80
28 26 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:64081379 original size:82 final size:81
Alignment explanation
Indices: 64081261--64081416 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
64081251 TGCTATATAA
* *
64081261 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
64081326 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
64081343 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
*
64081407 CCCTTAGTGC
65 CACTTAGTGC
64081417 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:64092763 original size:23 final size:22
Alignment explanation
Indices: 64092736--64092781 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
64092726 TGTGATAACG
64092736 TTATCTT-ATAAATATGTATGAAT
1 TTATCTTGA-AAATATGT-TGAAT
64092759 TTATCTTGAAAATATGTTGAAT
1 TTATCTTGAAAATATGTTGAAT
64092781 T
1 T
64092782 GGTTTGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.27
23 15 0.68
24 1 0.05
ACGTcount: A:0.37, C:0.04, G:0.11, T:0.48
Consensus pattern (22 bp):
TTATCTTGAAAATATGTTGAAT
Found at i:64101022 original size:12 final size:12
Alignment explanation
Indices: 64101005--64101033 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
64100995 CCACACATGC
64101005 CCGTGTGCTAGG
1 CCGTGTGCTAGG
64101017 CCGTGTGCTAGG
1 CCGTGTGCTAGG
64101029 CCGTG
1 CCGTG
64101034 CCAAACCTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.28, G:0.41, T:0.24
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:64108265 original size:48 final size:47
Alignment explanation
Indices: 64108189--64108349 Score: 139
Period size: 48 Copynumber: 3.4 Consensus size: 47
64108179 AGATGCTAAC
* * *
64108189 GCCATGTCCCAGACATTGTCTTACACTAGCTCACATGTCGAGGCCAAT
1 GCCATGT-CCAGACATGGTCTTACACTAGCTCACATCTCCAGGCCAAT
* * * * *
64108237 GCCATGTCCTAGACATGGTCTTAGACTAGCTCTCGTCTCCATGCCGAT
1 GCCATGTCC-AGACATGGTCTTACACTAGCTCACATCTCCAGGCCAAT
* * * * * * *
64108285 GCCATGTCCAG-CATGGTCCTACACTGGCTCTCA-ATCAACGCCGAT
1 GCCATGTCCAGACATGGTCTTACACTAGCTCACATCTCCAGGCCAAT
*
64108330 GCCATCTCCA-ACATGGTCTT
1 GCCATGTCCAGACATGGTCTT
64108350 TGTAACACCC
Statistics
Matches: 94, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
45 26 0.28
46 18 0.19
47 4 0.04
48 46 0.49
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.26
Consensus pattern (47 bp):
GCCATGTCCAGACATGGTCTTACACTAGCTCACATCTCCAGGCCAAT
Found at i:64108812 original size:21 final size:22
Alignment explanation
Indices: 64108772--64108812 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
64108762 TTCCAAATAA
* *
64108772 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
64108794 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
64108813 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:64110051 original size:15 final size:16
Alignment explanation
Indices: 64110024--64110053 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
64110014 AGATATTCCA
64110024 ATTTAGTCCCATTTTT
1 ATTTAGTCCCATTTTT
64110040 ATTTAG-CCCATTTT
1 ATTTAGTCCCATTTT
64110054 GGCAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (16 bp):
ATTTAGTCCCATTTTT
Found at i:64121426 original size:29 final size:29
Alignment explanation
Indices: 64121363--64121430 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
64121353 TAATCAACCG
*
64121363 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
64121392 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
64121421 CGCACACTTA
1 CGCACACTTA
64121431 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:64121542 original size:174 final size:174
Alignment explanation
Indices: 64121252--64122101 Score: 1601
Period size: 174 Copynumber: 4.9 Consensus size: 174
64121242 AACTCAAGGT
* *
64121252 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
64121317 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
64121382 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
* *
64121426 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
64121491 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
64121556 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
64121600 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
64121665 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
64121730 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
64121774 ACTTACCTTTTCCACTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
64121839 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
64121904 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
64121948 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
64122013 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
64122078 ACTTTAAACTCACACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
64122102 TGTTTTTCCT
Statistics
Matches: 664, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 664 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:64121600 original size:29 final size:29
Alignment explanation
Indices: 64121537--64121604 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
64121527 TAATCAACCG
64121537 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
64121566 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
64121595 CGCACACTTA
1 CGCACACTTA
64121605 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:64121774 original size:29 final size:29
Alignment explanation
Indices: 64121711--64121778 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
64121701 TAATCAACCG
64121711 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
64121740 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
64121769 CGCACACTTA
1 CGCACACTTA
64121779 CCTTTTCCAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:64121948 original size:29 final size:29
Alignment explanation
Indices: 64121885--64121952 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
64121875 TAATCAACCA
*
64121885 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
64121914 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
64121943 CGCACACTTA
1 CGCACACTTA
64121953 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:64129137 original size:22 final size:22
Alignment explanation
Indices: 64129111--64129154 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
64129101 GAAAATAATC
64129111 AAAATTAATAAAAATTAATTAT
1 AAAATTAATAAAAATTAATTAT
* *
64129133 AAAATTAATTAAAATTCATTAT
1 AAAATTAATAAAAATTAATTAT
64129155 GTTAATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATAAAAATTAATTAT
Found at i:64129138 original size:12 final size:11
Alignment explanation
Indices: 64129111--64129146 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
64129101 GAAAATAATC
64129111 AAAATTAA-TA
1 AAAATTAATTA
64129121 AAAATTAATTA
1 AAAATTAATTA
64129132 TAAAATTAATTA
1 -AAAATTAATTA
64129144 AAA
1 AAA
64129147 TTCATTATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 8 0.33
11 5 0.21
12 11 0.46
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAATTAATTA
Found at i:64129153 original size:10 final size:10
Alignment explanation
Indices: 64129102--64129153 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
64129092 AAATCTATTG
*
64129102 AAAA-TAATC
1 AAAATTAATT
*
64129111 AAAATTAATA
1 AAAATTAATT
64129121 AAAATTAATTAT
1 AAAATTAA-T-T
64129133 AAAATTAATT
1 AAAATTAATT
*
64129143 AAAATTCATT
1 AAAATTAATT
64129153 A
1 A
64129154 TGTTAATATT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
9 4 0.11
10 23 0.62
11 2 0.05
12 8 0.22
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:64132204 original size:79 final size:78
Alignment explanation
Indices: 64132069--64132287 Score: 246
Period size: 79 Copynumber: 2.7 Consensus size: 78
64132059 GAATCACATA
* * * * * *
64132069 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTTGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
64132133 TAACTCGCACAAATG
64 TAACTCGCACAAATG
* *
64132148 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAG
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
64132212 TAACTCGCACAAATG
64 TAACTCGCACAAATG
* * *
64132227 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
64132288 TATCATTCGA
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 61 0.51
80 44 0.37
81 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (78 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
ACTCGCACAAATG
Done.