Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 187 of 290
Found at i:64132216 original size:39 final size:41
Alignment explanation
Indices: 64132083--64132287 Score: 228
Period size: 40 Copynumber: 5.1 Consensus size: 41
64132073 CGGAATTTAA
* * *
64132083 CCGG-ATATAGCT-ACTCGCTCAAATGCCTTTGGGACATAGC
1 CCGGAATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
64132123 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
64132163 CCGG-ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
64132202 CCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
64132242 CCGG-ATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
64132283 CCGGA
1 CCGGA
64132288 TATCATTCGA
Statistics
Matches: 142, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.24
40 80 0.56
41 23 0.16
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:64141853 original size:42 final size:42
Alignment explanation
Indices: 64141806--64141927 Score: 163
Period size: 43 Copynumber: 2.9 Consensus size: 42
64141796 TAGGGTTAGT
*
64141806 TGAGATTACGTGTAAGACCATATTTGGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* * * *
64141848 TGAGATTTCGTGTAAGACCATAGCTAGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATA
** *
64141891 TGAGATCCCATGTAAGACCATATCTGGGATATGGCAT
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCAT
64141928 TGGTATGGTA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 32 0.47
43 36 0.53
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:64145093 original size:64 final size:64
Alignment explanation
Indices: 64145020--64145851 Score: 1664
Period size: 64 Copynumber: 13.0 Consensus size: 64
64145010 TATCATGATC
64145020 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
1 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
64145084 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
1 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
64145148 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
1 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
64145212 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
1 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
64145276 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
1 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
64145340 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
1 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
64145404 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
1 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
64145468 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
1 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
64145532 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
1 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
64145596 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
1 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
64145660 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
1 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
64145724 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
1 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
64145788 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
1 ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
64145852 TCAAACTCAC
Statistics
Matches: 768, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 768 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (64 bp):
ATAGATATAGTTATAACATTTATTCACGTATGTATCACACTGCACGCTTATGATTCATTGCTGA
Found at i:64146059 original size:45 final size:45
Alignment explanation
Indices: 64145959--64146085 Score: 138
Period size: 45 Copynumber: 2.9 Consensus size: 45
64145949 TTTTCTCAAA
* * *
64145959 TCACCGGCATT-TCGCCTGTTAGGCTCG-AGGCCTG-ATATCAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
64146001 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-A-T
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA-TCAGT
** * *
64146045 CTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 -TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
64146086 ATCAAGTCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
42 11 0.15
43 14 0.19
44 7 0.10
45 40 0.55
46 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATATCAGT
Found at i:64146463 original size:43 final size:43
Alignment explanation
Indices: 64146415--64146526 Score: 197
Period size: 43 Copynumber: 2.6 Consensus size: 43
64146405 CCGGCATTAC
64146415 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGAACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGAACGAA
* *
64146458 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGAACGAA
*
64146501 GCCTACTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
64146527 TAATACCAGC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGAACGAA
Found at i:64146592 original size:38 final size:38
Alignment explanation
Indices: 64146524--64146598 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 38
64146514 GAAGGCCCGA
* * * *
64146524 ATATAATACCAGCACTAGGCCTACGGGATTTATCCCAG
1 ATATAATACCAGCACGAAGCCTACGAGATTTAACCCAG
*
64146562 ATATAATACCAGCACGAAGCCTGCGAGATTTAACCCA
1 ATATAATACCAGCACGAAGCCTACGAGATTTAACCCA
64146599 AATACACATC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTACGAGATTTAACCCAG
Found at i:64148089 original size:59 final size:59
Alignment explanation
Indices: 64147997--64148114 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
64147987 TCACACATGC
*
64147997 ACTTTCACATGAAATAACCACATAATATAACATTTGATTATTTTTGGGACTCGATTTTG
1 ACTTTCACATGAAATAAACACATAATATAACATTTGATTATTTTTGGGACTCGATTTTG
64148056 ACTTTCACATGAAATAAACACATAATATAACATTTGATTATTTTTGGGACTCGATTTTG
1 ACTTTCACATGAAATAAACACATAATATAACATTTGATTATTTTTGGGACTCGATTTTG
64148115 TGATCCCGAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (59 bp):
ACTTTCACATGAAATAAACACATAATATAACATTTGATTATTTTTGGGACTCGATTTTG
Found at i:64150916 original size:43 final size:43
Alignment explanation
Indices: 64150868--64150979 Score: 197
Period size: 43 Copynumber: 2.6 Consensus size: 43
64150858 CCGACATTAC
64150868 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
64150911 GCCTGCTAGGTACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
64150954 GCCTGCTAGGCACAAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
64150980 TAATACTAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.30, C:0.33, G:0.25, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:64151029 original size:38 final size:38
Alignment explanation
Indices: 64150977--64151051 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
64150967 AAAGGCCCGA
* * *
64150977 ATATAATACTAGCACTAGGCCTGCGGGATTTATCCCAG
1 ATATAATACCAGCACGAGGCCTGCGGGATTTAACCCAG
*
64151015 ATATAATACCAGCACGATGCCTGCGGGATTTAACCCA
1 ATATAATACCAGCACGAGGCCTGCGGGATTTAACCCA
64151052 AATACACATC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACGAGGCCTGCGGGATTTAACCCAG
Found at i:64155441 original size:37 final size:37
Alignment explanation
Indices: 64155380--64155561 Score: 319
Period size: 37 Copynumber: 4.9 Consensus size: 37
64155370 GCTTAGACGA
* * * * *
64155380 AATCTCCACACGAAGTTATTGGGTCTTACCCAGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
64155417 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
64155454 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
64155491 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
64155528 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
64155562 ATATATTTCC
Statistics
Matches: 140, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 140 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:64169758 original size:24 final size:26
Alignment explanation
Indices: 64169726--64169774 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
64169716 AGTTCATGTA
64169726 ATATTAAAGC-ATTTAA-ATACAATT
1 ATATTAAAGCTATTTAACATACAATT
64169750 ATATTAAAGCTTATTTAACATACAA
1 ATATTAAAGC-TATTTAACATACAA
64169775 ACCTACCTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
26 6 0.27
27 6 0.27
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (26 bp):
ATATTAAAGCTATTTAACATACAATT
Found at i:64176789 original size:40 final size:40
Alignment explanation
Indices: 64176722--64176898 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
64176712 ACCCAAGTAT
*
64176722 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
64176761 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
64176801 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
64176841 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
64176881 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
64176899 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:64177446 original size:2 final size:2
Alignment explanation
Indices: 64177439--64177463 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
64177429 TTAAAGTGCC
64177439 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
64177464 AGTGCTTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64184620 original size:40 final size:40
Alignment explanation
Indices: 64184550--64184714 Score: 219
Period size: 40 Copynumber: 4.2 Consensus size: 40
64184540 ACCCAAGTAT
*
64184550 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
64184589 CTTCGGGTCTTAGCCCGAATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
64184629 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
64184669 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
64184709 CTTCGG
1 CTTCGG
64184715 ATATTAGTCC
Statistics
Matches: 110, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.12
40 94 0.85
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:64186675 original size:16 final size:16
Alignment explanation
Indices: 64186650--64186680 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64186640 AAACTTTTGG
*
64186650 CTTTTTAGCATTTCAA
1 CTTTTCAGCATTTCAA
64186666 CTTTTCAGCATTTCA
1 CTTTTCAGCATTTCA
64186681 GCTTCTGTCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.23, G:0.06, T:0.48
Consensus pattern (16 bp):
CTTTTCAGCATTTCAA
Found at i:64194098 original size:28 final size:29
Alignment explanation
Indices: 64194058--64194168 Score: 120
Period size: 29 Copynumber: 3.9 Consensus size: 29
64194048 TGTATCTGGA
* *
64194058 CCATTAAGCCC-AATCATATTCATATGGC
1 CCATTAGGCCCAAATCACATTCATATGGC
*
64194086 CCATTAGGCCCAAATCACCTGT-ATATGGC
1 CCATTAGGCCCAAATCACAT-TCATATGGC
*
64194115 CCATTAGGCCCAAATCACATTTATATGGC
1 CCATTAGGCCCAAATCACATTCATATGGC
*** *
64194144 ATGTTAGGCCC-AGTCACATTCATAT
1 CCATTAGGCCCAAATCACATTCATAT
64194169 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 23 0.32
29 47 0.66
30 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (29 bp):
CCATTAGGCCCAAATCACATTCATATGGC
Found at i:64194111 original size:29 final size:29
Alignment explanation
Indices: 64194048--64194143 Score: 115
Period size: 29 Copynumber: 3.3 Consensus size: 29
64194038 TTCACATACC
* * * *
64194048 TGTATCTGGACCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
64194076 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
64194105 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
64194134 TTTATATGGC
1 TGTATATGGC
64194144 ATGTTAGGCC
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
27 1 0.02
28 16 0.28
29 40 0.69
30 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:64194154 original size:58 final size:57
Alignment explanation
Indices: 64194045--64194155 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
64194035 AAATTCACAT
* * *
64194045 ACCTGTATCTGGACCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGACCATTAAGCCCAATCACATTCATATGGCACATTAGGCCCAAATC
* * * **
64194102 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCATGTTAGGCCCA
1 ACCTGTATATGGACCATTAAGCCC-AATCACATTCATATGGCACATTAGGCCCA
64194156 GTCACATTCA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 21 0.47
58 24 0.53
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (57 bp):
ACCTGTATATGGACCATTAAGCCCAATCACATTCATATGGCACATTAGGCCCAAATC
Found at i:64195661 original size:16 final size:17
Alignment explanation
Indices: 64195630--64195668 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
64195620 AATAAAAAAG
64195630 TTTGGGATTCTGGGATT
1 TTTGGGATTCTGGGATT
*
64195647 TTTGGG-TTTTGGGATT
1 TTTGGGATTCTGGGATT
64195663 TTTGGG
1 TTTGGG
64195669 GCGTTACAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.08, C:0.03, G:0.38, T:0.51
Consensus pattern (17 bp):
TTTGGGATTCTGGGATT
Found at i:64196108 original size:19 final size:21
Alignment explanation
Indices: 64196084--64196123 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
64196074 CTTGAATAAA
64196084 GGATGA-TATGC-ATGATTTT
1 GGATGACTATGCAATGATTTT
64196103 GGATGACGTATGCAATGATTT
1 GGATGAC-TATGCAATGATTT
64196124 ATGAAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
21 5 0.28
22 7 0.39
ACGTcount: A:0.28, C:0.07, G:0.28, T:0.38
Consensus pattern (21 bp):
GGATGACTATGCAATGATTTT
Found at i:64196354 original size:41 final size:41
Alignment explanation
Indices: 64196295--64196544 Score: 238
Period size: 41 Copynumber: 6.1 Consensus size: 41
64196285 ATAATATTGT
* *
64196295 TGAATTGCACTTACGTGCCCTTAATTCTACTTCGGTACCCC
1 TGAATTGCACTTACGTGCCCTTAATTGTACTTCAGTACCCC
* * * * *
64196336 TGAATTGCA-TATATGTG-CCTTGATTGTATTTTAGTACCTC
1 TGAATTGCACT-TACGTGCCCTTAATTGTACTTCAGTACCCC
* * *
64196376 TGAATTGTACTGACGTGCCCCTAATTGTACTTCAGTACCCC
1 TGAATTGCACTTACGTGCCCTTAATTGTACTTCAGTACCCC
* *
64196417 TGAATTGCACTTACGTGCCCCTT-ATTGTACTTCAATACCTC
1 TGAATTGCACTTACGTG-CCCTTAATTGTACTTCAGTACCCC
* * * **
64196458 TAAATTGCACTTATGTGCCCCTAATTGTACTTTGGTACCCC
1 TGAATTGCACTTACGTGCCCTTAATTGTACTTCAGTACCCC
* * * * * *
64196499 TCAATTGCA-TGTACGTGCCCCTATTTGTACATCAATACCCT
1 TGAATTGCACT-TACGTGCCCTTAATTGTACTTCAGTACCCC
64196540 TGAAT
1 TGAAT
64196545 GTACTTTTGT
Statistics
Matches: 167, Mismatches: 36, Indels: 12
0.78 0.17 0.06
Matches are distributed among these distances:
40 35 0.21
41 128 0.77
42 4 0.02
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.36
Consensus pattern (41 bp):
TGAATTGCACTTACGTGCCCTTAATTGTACTTCAGTACCCC
Found at i:64196428 original size:21 final size:19
Alignment explanation
Indices: 64196393--64196507 Score: 77
Period size: 21 Copynumber: 5.6 Consensus size: 19
64196383 TACTGACGTG
*
64196393 CCCCTAATTGTACTTCAGTA
1 CCCCTAATTGCACTT-AGTA
*
64196413 CCCCTGAATTGCACTTACGTG
1 CCCCT-AATTGCACTTA-GTA
* * *
64196434 CCCCTTATTGTACTTCAATA
1 CCCCTAATTGCACTT-AGTA
* *
64196454 CCTCTAAATTGCACTTATGTG
1 CCCCT-AATTGCACTTA-GTA
* *
64196475 CCCCTAATTGTACTTTGGTA
1 CCCCTAATTGCAC-TTAGTA
64196495 CCCCTCAATTGCA
1 CCCCT-AATTGCA
64196508 TGTACGTGCC
Statistics
Matches: 72, Mismatches: 16, Indels: 13
0.71 0.16 0.13
Matches are distributed among these distances:
20 34 0.47
21 38 0.53
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.35
Consensus pattern (19 bp):
CCCCTAATTGCACTTAGTA
Found at i:64196482 original size:82 final size:82
Alignment explanation
Indices: 64196297--64196537 Score: 292
Period size: 82 Copynumber: 3.0 Consensus size: 82
64196287 AATATTGTTG
* * *
64196297 AATTGCACTTACGTGCCCTTAATTCTACTTCGGTACCCCTGAATTGCATATATGTG--CCTTGAT
1 AATTGCACTTACGTGCCCCTAATTGTACTTCGGTACCCCTGAATTGCATATACGTGCCCCTT-AT
* * * *
64196360 TGTATTTTAGTACCTCTG
65 TGTACTTCAATACCTCTA
* * *
64196378 AATTGTACTGACGTGCCCCTAATTGTACTTCAGTACCCCTGAATTGCACT-TACGTGCCCCTTAT
1 AATTGCACTTACGTGCCCCTAATTGTACTTCGGTACCCCTGAATTGCA-TATACGTGCCCCTTAT
64196442 TGTACTTCAATACCTCTA
65 TGTACTTCAATACCTCTA
* * * *
64196460 AATTGCACTTATGTGCCCCTAATTGTACTTTGGTACCCCTCAATTGCATGTACGTGCCCC-TATT
1 AATTGCACTTACGTGCCCCTAATTGTACTTCGGTACCCCTGAATTGCATATACGTGCCCCTTA-T
*
64196524 TGTACATCAATACC
65 TGTACTTCAATACC
64196538 CTTGAATGTA
Statistics
Matches: 138, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
81 51 0.37
82 83 0.60
83 4 0.03
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (82 bp):
AATTGCACTTACGTGCCCCTAATTGTACTTCGGTACCCCTGAATTGCATATACGTGCCCCTTATT
GTACTTCAATACCTCTA
Found at i:64196489 original size:20 final size:20
Alignment explanation
Indices: 64196378--64196528 Score: 101
Period size: 20 Copynumber: 7.4 Consensus size: 20
64196368 AGTACCTCTG
*
64196378 AATTGTACTGACGTGCCCCT
1 AATTGTACTTACGTGCCCCT
*
64196398 AATTGTACTT-CAGTACCCCT
1 AATTGTACTTAC-GTGCCCCT
*
64196418 GAATTGCACTTACGTGCCCCT
1 -AATTGTACTTACGTGCCCCT
* * * *
64196439 TATTGTACTT-CAATACCTCT
1 AATTGTACTTAC-GTGCCCCT
* *
64196459 AAATTGCACTTATGTGCCCCT
1 -AATTGTACTTACGTGCCCCT
** *
64196480 AATTGTACTTTGGTACCCCT
1 AATTGTACTTACGTGCCCCT
*
64196500 CAATTGCA-TGTACGTGCCCCT
1 -AATTGTACT-TACGTGCCCCT
*
64196521 ATTTGTAC
1 AATTGTAC
64196529 ATCAATACCC
Statistics
Matches: 97, Mismatches: 25, Indels: 17
0.70 0.18 0.12
Matches are distributed among these distances:
19 2 0.02
20 51 0.53
21 43 0.44
22 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (20 bp):
AATTGTACTTACGTGCCCCT
Found at i:64203900 original size:57 final size:57
Alignment explanation
Indices: 64203809--64203978 Score: 277
Period size: 57 Copynumber: 3.0 Consensus size: 57
64203799 GTAATTGTAG
*
64203809 TAGGTCTCACTTTCCAATTTCCTAGCTTCCTGAAAATAGCATAGGCATTAGATTTAA
1 TAGGTCTCACTTTCCAAATTCCTAGCTTCCTGAAAATAGCATAGGCATTAGATTTAA
* *
64203866 TATGTCTCACTTTCCAAATTCCTAGCTTCCTGAAAATAGCATAGGCATTAGATTTAG
1 TAGGTCTCACTTTCCAAATTCCTAGCTTCCTGAAAATAGCATAGGCATTAGATTTAA
* * * *
64203923 TAGGTATCGCTTTCCAAATTCTTAGCTTCCTGAAAATAGCATATGCATTAGATTTA
1 TAGGTCTCACTTTCCAAATTCCTAGCTTCCTGAAAATAGCATAGGCATTAGATTTA
64203979 TACTCGCTCC
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 105 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (57 bp):
TAGGTCTCACTTTCCAAATTCCTAGCTTCCTGAAAATAGCATAGGCATTAGATTTAA
Found at i:64204235 original size:12 final size:12
Alignment explanation
Indices: 64204204--64204236 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
64204194 TTGGCATGAA
64204204 AATATTTATTTT
1 AATATTTATTTT
*
64204216 ATTA-TTATTTT
1 AATATTTATTTT
64204227 AATATTTATT
1 AATATTTATT
64204237 GTATGTTAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
AATATTTATTTT
Found at i:64210141 original size:18 final size:18
Alignment explanation
Indices: 64210117--64210159 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
64210107 AAACCTATAA
64210117 AAAATAAATAC-ACTAAGT
1 AAAATAAA-ACTACTAAGT
*
64210135 TAAATAAAACTACTAAGT
1 AAAATAAAACTACTAAGT
64210153 AAAATAA
1 AAAATAA
64210160 CCAAACCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 2 0.09
18 20 0.91
ACGTcount: A:0.63, C:0.09, G:0.05, T:0.23
Consensus pattern (18 bp):
AAAATAAAACTACTAAGT
Found at i:64214914 original size:22 final size:21
Alignment explanation
Indices: 64214862--64214915 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
64214852 CAGTCTATAG
*
64214862 CACGGGCGTGTCCCAGGGCCA
1 CACGGGCGTGTCCCAGGACCA
* *
64214883 CACGGACGTGTCCCTTGGACCA
1 CACGGGCGTGTCCC-AGGACCA
*
64214905 CATGGGCGTGT
1 CACGGGCGTGT
64214916 GAGCCCTGCA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 13 0.48
22 14 0.52
ACGTcount: A:0.15, C:0.33, G:0.35, T:0.17
Consensus pattern (21 bp):
CACGGGCGTGTCCCAGGACCA
Found at i:64219100 original size:19 final size:19
Alignment explanation
Indices: 64219068--64219113 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
64219058 ACAACATGTA
* * *
64219068 ATAATGTCACATTATTTAC
1 ATAATATCAAATTATTCAC
64219087 ATAATATCAAATTATTCAC
1 ATAATATCAAATTATTCAC
64219106 ATATATAT
1 ATA-ATAT
64219114 ACTTACAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.41
Consensus pattern (19 bp):
ATAATATCAAATTATTCAC
Found at i:64230849 original size:49 final size:49
Alignment explanation
Indices: 64230745--64230874 Score: 172
Period size: 49 Copynumber: 2.6 Consensus size: 49
64230735 GGTTACGATA
* * * *
64230745 TCGATGCCATGTCCCAGACATGGTCTTATACTGGTTTTTATATAGCGAGG
1 TCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATATAGCGAGG
* * *
64230795 CCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCG-GTG
1 TCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGAG-G
64230844 TCGATGCCATGTCCCAGACAGGTCTTACACT
1 TCGATGCCATGTCCCAGACAGGTCTTACACT
64230875 AACACACAAC
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
48 1 0.01
49 51 0.72
50 19 0.27
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (49 bp):
TCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGAGG
Found at i:64238613 original size:26 final size:26
Alignment explanation
Indices: 64238584--64238636 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
64238574 TCAAACATGC
*
64238584 ATTTATGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGT-AATTTAACTCCTAGGGGT
* *
64238610 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAGGTAATTTAACTCCTAGGGGT
64238636 A
1 A
64238637 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTAACTCCTAGGGGT
Found at i:64240155 original size:26 final size:26
Alignment explanation
Indices: 64240124--64240231 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
64240114 TGAAATTCCC
64240124 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
64240150 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
64240176 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
64240202 ATCATGGAACATTTACCT-AACCTATT
1 ATCATGGAACATTTACCTAAACC-ATT
64240228 ATCA
1 ATCA
64240232 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 3 0.04
26 73 0.96
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:64241904 original size:40 final size:39
Alignment explanation
Indices: 64241860--64241985 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
64241850 AAGCGAATAT
* *
64241860 ATCCGGACTAAGATCCGAAGGCCTTTGTGCGAGTTGTTAA
1 ATCCGG-CTAAGATCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
64241900 ATCCGGGTAA-AGTCCCGAGGGCATTCGTGCGAGTTATTAA
1 ATCCGGCTAAGA-T-CCGAAGGCATTCGTGCGAGTTGTTAA
* *
64241940 AGCCGGGTTAAG-TCCTGAAGGCATTCGTGCGAGTTGTTAA
1 ATCC-GGCTAAGATCC-GAAGGCATTCGTGCGAGTTGTTAA
64241980 ATCCGG
1 ATCCGG
64241986 GTTACGTCCC
Statistics
Matches: 71, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
38 1 0.01
39 8 0.11
40 57 0.80
41 5 0.07
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (39 bp):
ATCCGGCTAAGATCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:64241973 original size:80 final size:78
Alignment explanation
Indices: 64241862--64242043 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 78
64241852 GCGAATATAT
* * * *
64241862 CCGGACTAAGATCCGAAGGCCTTTGTGCGAGTTGTTAAATCCGGGTAAAGTCCCGAGGGCATTCG
1 CCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTAAAGTCCCGAAGGCA-TCG
* *
64241927 TGCGAGTTATTAAAG
64 TGCGAGTTACTAAAA
* * * *
64241942 CCGGGTTAAGTCCTGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTCCCGAAGGCATGGT
1 CCGGGCTAAGTCC-GAAGGCATTCGTGCGAGTTGTTAAATCCGGGTAAAGTCCCGAAGGCATCGT
*
64242007 GTGAGTTACTAAAA
65 GCGAGTTACTAAAA
*
64242021 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGT-CCGAAGGCATT
64242044 TGAACGAGGA
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
79 35 0.40
80 52 0.60
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTAAAGTCCCGAAGGCATCGTG
CGAGTTACTAAAA
Found at i:64242025 original size:39 final size:40
Alignment explanation
Indices: 64241874--64242043 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
64241864 GGACTAAGAT
* * * *
64241874 CCGAAGGCCTTTGTGCGAGTTGTTAAATCCGGGTAAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
64241914 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * *
64241954 CTGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * * *
64241994 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
64242033 CCGAAGGCATT
1 CCGAAGGCATT
64242044 TGAACGAGGA
Statistics
Matches: 110, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
39 32 0.29
40 78 0.71
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:64247575 original size:25 final size:27
Alignment explanation
Indices: 64247538--64247590 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
64247528 TCAAACATGC
64247538 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
64247564 ATTTTGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
64247590 A
1 A
64247591 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:64249110 original size:26 final size:26
Alignment explanation
Indices: 64249081--64249185 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
64249071 AATTCCCATA
* *
64249081 ATGGAATATTTACCTAAACCATTATC
1 ATGGAACATTTACCTAACCCATTATC
64249107 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
* *
64249133 ATGGAATATTTACCTAATCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
64249159 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
64249185 A
1 A
64249186 ATTTGTATCA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
ATGGAACATTTACCTAACCCATTATC
Found at i:64249138 original size:52 final size:52
Alignment explanation
Indices: 64249081--64249185 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
64249071 AATTCCCATA
64249081 ATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATC
1 ATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATC
*
64249133 ATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATC
1 ATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATC
64249185 A
1 A
64249186 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (52 bp):
ATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATC
Found at i:64251043 original size:43 final size:42
Alignment explanation
Indices: 64250965--64251047 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
64250955 TATGATTTAC
** * *
64250965 GTGTAAGACCATGTTTGGGACATCGGTATCGTATTTGATTTT
1 GTGTAAGACCATGTTTGGGACAGAGGCATCATATTTGATTTT
*
64251007 GTGTAAGACCCTGTTTGGGACAGAGGCATCAATATTTGATT
1 GTGTAAGACCATGTTTGGGACAGAGGCATC-ATATTTGATT
64251048 ACATGTAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 26 0.74
43 9 0.26
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (42 bp):
GTGTAAGACCATGTTTGGGACAGAGGCATCATATTTGATTTT
Found at i:64256720 original size:128 final size:128
Alignment explanation
Indices: 64256572--64256835 Score: 492
Period size: 128 Copynumber: 2.1 Consensus size: 128
64256562 ATACATGACC
*
64256572 TACATAATATACATGATAGGACACAATATGATATTTACAACATATAAAACTATAATAAAATGATA
1 TACAT-ATATACATGATAGGACACAATATGATAATTACAACATATAAAACTATAATAAAATGATA
64256637 TACAAGATGTAATATTAATTTACATGGGCATAATATGAAGTATAACAGATATATTAAAAGTATG
65 TACAAGATGTAATATTAATTTACATGGGCATAATATGAAGTATAACAGATATATTAAAAGTATG
64256701 TACATATATACATGATAGGACACAATATGATAATTACAACATATAAAACTATAATAAAATGATAT
1 TACATATATACATGATAGGACACAATATGATAATTACAACATATAAAACTATAATAAAATGATAT
*
64256766 ACAAGATGTAATATTAATTTACATGGGCATAATATGAAGTATAACATATATATTAAAAGTATG
66 ACAAGATGTAATATTAATTTACATGGGCATAATATGAAGTATAACAGATATATTAAAAGTATG
*
64256829 TATATAT
1 TACATAT
64256836 GACACGAATG
Statistics
Matches: 132, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
128 127 0.96
129 5 0.04
ACGTcount: A:0.49, C:0.08, G:0.11, T:0.32
Consensus pattern (128 bp):
TACATATATACATGATAGGACACAATATGATAATTACAACATATAAAACTATAATAAAATGATAT
ACAAGATGTAATATTAATTTACATGGGCATAATATGAAGTATAACAGATATATTAAAAGTATG
Found at i:64257307 original size:17 final size:18
Alignment explanation
Indices: 64257278--64257311 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
64257268 AGCATGTGTC
64257278 AAACTATTTTCATACTTG
1 AAACTATTTTCATACTTG
64257296 AAACTA-TTTCATACTT
1 AAACTATTTTCATACTT
64257312 ACTATTCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.35, C:0.18, G:0.03, T:0.44
Consensus pattern (18 bp):
AAACTATTTTCATACTTG
Found at i:64264470 original size:22 final size:21
Alignment explanation
Indices: 64264444--64264494 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
64264434 TACAAGGCTC
*
64264444 ACACGCCCGTGTTGTCCAAGGG
1 ACACGCCCGTG-TGACCAAGGG
* **
64264466 ACACGCCTGTGTGACCCTGGG
1 ACACGCCCGTGTGACCAAGGG
64264487 ACACGCCC
1 ACACGCCC
64264495 ATGCTGTAGG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.18, C:0.37, G:0.29, T:0.16
Consensus pattern (21 bp):
ACACGCCCGTGTGACCAAGGG
Found at i:64265787 original size:58 final size:57
Alignment explanation
Indices: 64265638--64265787 Score: 151
Period size: 57 Copynumber: 2.6 Consensus size: 57
64265628 ATCGTATTAT
* * *
64265638 AGGATTACCAGTCCAGGCTAAATCCTTTATGTAACGTATGCTCAGAAGAGCTCATTT
1 AGGATTACCAGTCCAGGCTAAATCCTTTATGTAACATATGCTCAGAAGAGATCATTC
* * * * * *
64265695 AAGATTACTAGTTCAGGCTAAAT-CTTAATTGTAACATATGCTCA-AGAGGGATTATATC
1 AGGATTACCAGTCCAGGCTAAATCCTTTA-TGTAACATATGCTCAGA-AGAGATCAT-TC
* * *
64265753 AGGATTACCCGTCCGGGCTAAATCCTTTACGTAAC
1 AGGATTACCAGTCCAGGCTAAATCCTTTATGTAAC
64265788 GAGGTCAATA
Statistics
Matches: 73, Mismatches: 16, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
56 5 0.07
57 40 0.55
58 24 0.33
59 4 0.05
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTTTATGTAACATATGCTCAGAAGAGATCATTC
Found at i:64269806 original size:42 final size:42
Alignment explanation
Indices: 64269690--64269807 Score: 123
Period size: 42 Copynumber: 2.8 Consensus size: 42
64269680 TGAGATTATG
* * * **
64269690 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTTA
1 TGTAAGACCATATCTGGGATATTGCATAGGTATGAGACTCCA
* * *
64269732 TGTAAGA-CATAGCTTGGCTATTGGCATAGGTATGAGA-TCCCA
1 TGTAAGACCATATCTGGGATATT-GCATAGGTATGAGACT-CCA
*
64269774 TGTAAGACCATATCTGGGATATTGCATTGGTATG
1 TGTAAGACCATATCTGGGATATTGCATAGGTATG
64269808 GCACTATGTG
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
41 12 0.20
42 37 0.61
43 12 0.20
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATTGCATAGGTATGAGACTCCA
Found at i:64269911 original size:20 final size:20
Alignment explanation
Indices: 64269883--64269929 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
64269873 CGATAAAGTT
64269883 TAAGTTGTGAAAGACTATGG
1 TAAGTTGTGAAAGACTATGG
* *
64269903 TATGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGACTATGG
64269923 TAAGTTG
1 TAAGTTG
64269930 CAAGTTGGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.32, C:0.02, G:0.30, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGG
Found at i:64272727 original size:39 final size:39
Alignment explanation
Indices: 64272668--64272744 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
64272658 AGTGGCAGTC
*
64272668 TGACAATGTGAGAAAATTATATAAAGGAGGAGGTTTCGA
1 TGACAATGTGAGAAAATTATATAAAGGAGGAGGGTTCGA
*
64272707 TGACGATGTGAGAAAATTATATAAAGGAGGAGGGTTCG
1 TGACAATGTGAGAAAATTATATAAAGGAGGAGGGTTCG
64272745 GTCACCAATG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.39, C:0.05, G:0.31, T:0.25
Consensus pattern (39 bp):
TGACAATGTGAGAAAATTATATAAAGGAGGAGGGTTCGA
Found at i:64274680 original size:23 final size:23
Alignment explanation
Indices: 64274653--64274702 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
64274643 AAGAGAGCAG
64274653 AAGGATTGATCAAAGAAGAAATT
1 AAGGATTGATCAAAGAAGAAATT
* * *
64274676 AAGGATTGATTAGATAAGAAATT
1 AAGGATTGATCAAAGAAGAAATT
64274699 AAGG
1 AAGG
64274703 TTTCTGTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.50, C:0.02, G:0.24, T:0.24
Consensus pattern (23 bp):
AAGGATTGATCAAAGAAGAAATT
Found at i:64276001 original size:27 final size:27
Alignment explanation
Indices: 64275970--64276028 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
64275960 TAGGTGTAAG
*
64275970 TGATTTTGACAAGCAACTAAGTGTATA
1 TGATTTTGACAAGCAACTAACTGTATA
* *
64275997 TGATTTTGATAAGCAACTAACTGTATG
1 TGATTTTGACAAGCAACTAACTGTATA
64276024 TGATT
1 TGATT
64276029 CGGATTCCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (27 bp):
TGATTTTGACAAGCAACTAACTGTATA
Found at i:64279658 original size:39 final size:39
Alignment explanation
Indices: 64279537--64279717 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 39
64279527 GCTACTCGTT
*
64279537 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCGGATT-TAGTAACTCGCA
*
64279577 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGC-CGGATTTAGTAACTCGCA
* *
64279617 CAAATGCCTTCGGG-CTTAGCCAGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCC-GGATTTAGTAACTCGCA
* * * *
64279656 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCGGATTTAGTAAC-TCGCA
64279697 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
64279718 CGGACATCAT
Statistics
Matches: 122, Mismatches: 11, Indels: 17
0.81 0.07 0.11
Matches are distributed among these distances:
38 3 0.02
39 34 0.28
40 70 0.57
41 15 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCGGATTTAGTAACTCGCA
Found at i:64279682 original size:79 final size:81
Alignment explanation
Indices: 64279537--64279717 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 81
64279527 GCTACTCGTT
* * *
64279537 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGG
1 CAAATGCCTTCGGGACTTAGCCAGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGG
* *
64279602 ATTTAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
* *
64279617 CAAATGCCTTCGGG-CTTAGCCAGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTT-AGTC
1 CAAATGCCTTCGGGACTTAGCCAGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACT-
* *
64279678 CGGATATGGTCACTTAGCA
63 CGGATATAGTAACTTAGCA
64279697 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
64279718 CGGACATCAT
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
78 6 0.07
79 52 0.60
80 29 0.33
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCAGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGG
ATATAGTAACTTAGCA
Found at i:64287394 original size:60 final size:60
Alignment explanation
Indices: 64287320--64287440 Score: 172
Period size: 60 Copynumber: 2.0 Consensus size: 60
64287310 AGCACGCACC
* * * *
64287320 GCTCTTTATCCGGCACTTTTTAAAGTGAATTTTATTGCAACTTTTACACTTCT-GCTTTTG
1 GCTCTTCATCCGGCACTCTTCAAAGTGAAATTTATTGCAACTTTTACACTT-TGGCTTTTG
* *
64287380 GCTCTTCATCCGGCACTCTTCGAAGTGAAATTTATTGCAGCTTTTACACTTTGGCTTTTG
1 GCTCTTCATCCGGCACTCTTCAAAGTGAAATTTATTGCAACTTTTACACTTTGGCTTTTG
64287440 G
1 G
64287441 TCGTCCACAT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
59 1 0.02
60 53 0.98
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (60 bp):
GCTCTTCATCCGGCACTCTTCAAAGTGAAATTTATTGCAACTTTTACACTTTGGCTTTTG
Found at i:64291834 original size:37 final size:37
Alignment explanation
Indices: 64291784--64291862 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
64291774 TTATTACGAA
* * *
64291784 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
64291821 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
64291858 GTCTT
1 GTCTT
64291863 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:64292059 original size:47 final size:47
Alignment explanation
Indices: 64291983--64292156 Score: 215
Period size: 47 Copynumber: 3.7 Consensus size: 47
64291973 CTTCGGGACT
* * * * *
64291983 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * *
64292030 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* *
64292077 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* * *
64292124 TATCTCATATATGCA-TGTTCACATCCATCACAT
1 TATCACATATATACACT-TTCACATTCATCACAT
64292157 AGAATCCTAA
Statistics
Matches: 114, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 1 0.01
47 113 0.99
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:64292145 original size:94 final size:94
Alignment explanation
Indices: 64291981--64292156 Score: 237
Period size: 94 Copynumber: 1.9 Consensus size: 94
64291971 CCCTTCGGGA
* * * * *
64291981 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
64292046 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATCCATCACATCGGCCATTAGGC
* * * * *
64292075 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
64292139 TGTTCACATCCATCACAT
66 T-TTCACATCCATCACAT
64292157 AGAATCCTAA
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
93 1 0.01
94 69 0.99
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATCCATCACATCGGCCATTAGGC
Found at i:64298061 original size:22 final size:22
Alignment explanation
Indices: 64298036--64298077 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
64298026 TTTATTAAAT
64298036 CACCACTAC-AAAACCACCATAC
1 CACCAC-ACTAAAACCACCATAC
*
64298058 CACCACACTAACACCACCAT
1 CACCACACTAAAACCACCAT
64298078 TTCTTTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.43, C:0.48, G:0.00, T:0.10
Consensus pattern (22 bp):
CACCACACTAAAACCACCATAC
Found at i:64299720 original size:40 final size:40
Alignment explanation
Indices: 64299661--64299878 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
64299651 CGGATGATAA
* *
64299661 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
64299701 CCGAGCTAAGTCCCGAAGGCA-TTGTTGCGAGTTACTA-ACT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTATA-T
*
64299741 CCGGGCTAAGTCCCGAAGGCATTTGTGGGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
64299781 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
64299821 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
64299861 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
64299879 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 19 0.12
40 137 0.86
41 4 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:64307022 original size:40 final size:40
Alignment explanation
Indices: 64306967--64307180 Score: 249
Period size: 40 Copynumber: 5.4 Consensus size: 40
64306957 TGATAACCGA
* *
64306967 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGG
64307007 GCTAAGTCCCGAAGGCA-TTGTTGCGAGTTACTA-ATTCCGG
1 GCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTATA-TCCGG
*
64307047 GCTAAGTCCCGAAGGCATTTGTGGGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* ** *
64307087 GCTAAGTCCCGAAGGAATTTGTGCGAACTACTTTATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* * *
64307127 GCTAAGTCCCGAAGGCATTCGAGCGAG-TAGCTAGATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
* *
64307166 GTTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
64307181 TACTTGGTTT
Statistics
Matches: 154, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 19 0.12
40 131 0.85
41 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
Found at i:64308629 original size:48 final size:48
Alignment explanation
Indices: 64308554--64308660 Score: 169
Period size: 48 Copynumber: 2.2 Consensus size: 48
64308544 ATTAATTTAT
* * *
64308554 AAATTTGGTGGTTTATCCATAACCTACATGTTTTAGTAGTTTGTCTGA
1 AAATTTGGTGGTTTATCCACAACCTACATGTTTTAGCAGCTTGTCTGA
* *
64308602 AAATTTGGTGGTTTATCCACAAGCTACATGTTTTAGCAGCTTGTCTGC
1 AAATTTGGTGGTTTATCCACAACCTACATGTTTTAGCAGCTTGTCTGA
64308650 AAATTTGGTGG
1 AAATTTGGTGG
64308661 CTTCGTCCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.40
Consensus pattern (48 bp):
AAATTTGGTGGTTTATCCACAACCTACATGTTTTAGCAGCTTGTCTGA
Found at i:64310078 original size:44 final size:44
Alignment explanation
Indices: 64310028--64310119 Score: 168
Period size: 44 Copynumber: 2.1 Consensus size: 44
64310018 ACATAAATAC
64310028 ACATTCATGCAAAATTCACTCATATCC-ATATTAGAAATATATTT
1 ACATTCATGCAAAATTCACTCATA-CCTATATTAGAAATATATTT
64310072 ACATTCATGCAAAATTCACTCATACCTATATTAGAAATATATTT
1 ACATTCATGCAAAATTCACTCATACCTATATTAGAAATATATTT
64310116 ACAT
1 ACAT
64310120 GAATGCTTAC
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
43 2 0.04
44 45 0.96
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.36
Consensus pattern (44 bp):
ACATTCATGCAAAATTCACTCATACCTATATTAGAAATATATTT
Found at i:64317498 original size:23 final size:21
Alignment explanation
Indices: 64317454--64317496 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
64317444 CTATTTAAAA
64317454 ATATATTTTATATTAACATTT
1 ATATATTTTATATTAACATTT
64317475 ATATAATTTTATAATTAA-ATTT
1 ATAT-ATTTTAT-ATTAACATTT
64317497 TAAGAAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.20
22 11 0.55
23 5 0.25
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
ATATATTTTATATTAACATTT
Found at i:64318100 original size:26 final size:26
Alignment explanation
Indices: 64318068--64318118 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
64318058 AAATAATTAA
*
64318068 TATAAATAAGGATATTTTGATAATTC
1 TATAAATAAGAATATTTTGATAATTC
64318094 TATAAATAAGAATATTTTGATAATT
1 TATAAATAAGAATATTTTGATAATT
64318119 TTACTTGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.45, C:0.02, G:0.10, T:0.43
Consensus pattern (26 bp):
TATAAATAAGAATATTTTGATAATTC
Found at i:64318587 original size:15 final size:14
Alignment explanation
Indices: 64318564--64318612 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
64318554 TTATACTTTA
*
64318564 ATTTAATATTTTTT
1 ATTTTATATTTTTT
64318578 ATCTTTATATTTTTT
1 AT-TTTATATTTTTT
64318593 AATTTTA-ATTTTTT
1 -ATTTTATATTTTTT
64318607 AGTTTT
1 A-TTTT
64318613 GAATAAATGG
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
13 1 0.03
14 13 0.42
15 15 0.48
16 2 0.06
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (14 bp):
ATTTTATATTTTTT
Found at i:64318598 original size:22 final size:22
Alignment explanation
Indices: 64318546--64318598 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
64318536 ATTATATAGA
64318546 TTTAATTTTTATACTTTAATTT
1 TTTAATTTTTATACTTTAATTT
** *
64318568 AATATTTTTTAT-CTTTATATTT
1 TTTAATTTTTATACTTTA-ATTT
64318590 TTTAATTTT
1 TTTAATTTT
64318599 AATTTTTTAG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTAATTTTTATACTTTAATTT
Found at i:64318603 original size:14 final size:14
Alignment explanation
Indices: 64318546--64318612 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 14
64318536 ATTATATAGA
* **
64318546 TTTAATTTTTATAC
1 TTTAATTTTAATTT
64318560 TTTAA-TTTAATATT
1 TTTAATTTTAAT-TT
*
64318574 TTTTATCTTTATATTT
1 TTTAAT-TTTA-ATTT
64318590 TTTAATTTTAATTT
1 TTTAATTTTAATTT
*
64318604 TTTAGTTTT
1 TTTAATTTT
64318613 GAATAAATGG
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
13 5 0.12
14 21 0.49
15 4 0.09
16 11 0.26
17 2 0.05
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.70
Consensus pattern (14 bp):
TTTAATTTTAATTT
Found at i:64325064 original size:15 final size:17
Alignment explanation
Indices: 64325034--64325065 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
64325024 TTGATACTTG
64325034 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
64325051 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
64325066 ATTTATACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:64331239 original size:27 final size:27
Alignment explanation
Indices: 64331209--64331386 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
64331199 ATATTGAGTC
* * * *
64331209 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
64331236 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
64331263 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
64331291 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
64331318 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
64331345 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
64331372 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64331387 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:64331348 original size:82 final size:81
Alignment explanation
Indices: 64331230--64331385 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
64331220 TGCTATATAA
* *
64331230 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
64331295 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
64331312 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
64331376 CACTTAGTGC
65 CACTTAGTGC
64331386 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:64339301 original size:27 final size:27
Alignment explanation
Indices: 64339271--64339448 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
64339261 ATATTGAGTC
* * * *
64339271 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
64339298 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
64339325 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
64339353 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
64339380 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
64339407 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
64339434 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64339449 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:64339410 original size:82 final size:81
Alignment explanation
Indices: 64339292--64339447 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
64339282 TGCTATATAA
* *
64339292 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
64339357 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
64339374 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
64339438 CACTTAGTGC
65 CACTTAGTGC
64339448 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:64339947 original size:12 final size:12
Alignment explanation
Indices: 64339930--64339956 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
64339920 ATGGCATACT
64339930 TATGTATATATA
1 TATGTATATATA
64339942 TATGTATATATA
1 TATGTATATATA
64339954 TAT
1 TAT
64339957 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:64342636 original size:9 final size:9
Alignment explanation
Indices: 64342622--64342646 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
64342612 ATCACATCCA
64342622 GCACGTAGG
1 GCACGTAGG
64342631 GCACGTAGG
1 GCACGTAGG
64342640 GCACGTA
1 GCACGTA
64342647 AGGCGGTGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.24, G:0.40, T:0.12
Consensus pattern (9 bp):
GCACGTAGG
Found at i:64343797 original size:45 final size:45
Alignment explanation
Indices: 64343606--64343954 Score: 202
Period size: 45 Copynumber: 7.7 Consensus size: 45
64343596 TTCAATCTAT
* * *
64343606 TCCACTGCAACTCCAGGG-GAATAAGACTTGTTATCTTTAGTCC-GC
1 TCCACTGCAACTTCAGGGAG-ATAAGACTTGCTATCTTCAG-CCTGC
** * *
64343651 TCCGTTGCAACTTCAGGGAGATAAGACTTG-T-T-TTGA-TCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGCCTGC
* * * ** *
64343692 TCTACTGCAACTTCAGAGAGATAAGATCTACAAT-TTATAGCTTCAATCTGT
1 TCCACTGCAACTTCAGGGAGATAAGA-CT----TGCTAT--CTTCAGCCTGC
*
64343743 TCCACTGCAAC-TCTAGGGAAATAAGACTTGCTATCTTCAGCCTGC
1 TCCACTGCAACTTC-AGGGAGATAAGACTTGCTATCTTCAGCCTGC
* * * *
64343788 TCTACTGCAACTTCAGGGAGATAAGAC-T--TATTTTGA-TCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGCCTGC
* * ** *
64343829 TCTACTGCAACTTCAGAGAGATAAGA-TCTGCAATTTATAGCTTCAATCTGT
1 TCCACTGCAACTTCAGGGAGATAAGACT-TGC----TAT--CTTCAGCCTGC
* * * *
64343880 TCCACTACAACTCCAGGGAAATAAGACTTGCTATCTTCAGCCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGCCTGC
*
64343925 TCCACTGCAACTTCAGGGAGATACGACTTG
1 TCCACTGCAACTTCAGGGAGATAAGACTTG
64343955 TAATTTCAAC
Statistics
Matches: 236, Mismatches: 40, Indels: 56
0.71 0.12 0.17
Matches are distributed among these distances:
40 1 0.00
41 53 0.22
42 12 0.05
43 1 0.00
44 2 0.01
45 88 0.37
46 6 0.03
47 7 0.03
48 3 0.01
50 10 0.04
51 52 0.22
52 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (45 bp):
TCCACTGCAACTTCAGGGAGATAAGACTTGCTATCTTCAGCCTGC
Found at i:64343797 original size:137 final size:137
Alignment explanation
Indices: 64343551--64343955 Score: 623
Period size: 137 Copynumber: 3.0 Consensus size: 137
64343541 TCCACTACAA
* * * ** * *
64343551 CTGCTCTATTACAACTCCAGAGAGATAAGATCTATGATTTATAGATTCAATCTATTCCACTGCAA
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTACAATTTATAGCTTCAATCTGTTCCACTGCAA
* * * **
64343616 CTCCAGGGGAATAAGACTTGTTATCTTTAGTCC-GCTCCGTTGCAACTTCAGGGAGATAAGACTT
66 CTCCAGGGAAATAAGACTTGCTATCTTCAG-CCTGCTCCACTGCAACTTCAGGGAGATAAGACTT
64343680 GTTTTGAT
130 GTTTTGAT
64343688 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTACAATTTATAGCTTCAATCTGTTCCACTGCAA
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTACAATTTATAGCTTCAATCTGTTCCACTGCAA
* * *
64343753 CTCTAGGGAAATAAGACTTGCTATCTTCAGCCTGCTCTACTGCAACTTCAGGGAGATAAGACTTA
66 CTCCAGGGAAATAAGACTTGCTATCTTCAGCCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
64343818 TTTTGAT
131 TTTTGAT
* *
64343825 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGCAATTTATAGCTTCAATCTGTTCCACTACAA
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTACAATTTATAGCTTCAATCTGTTCCACTGCAA
* *
64343890 CTCCAGGGAAATAAGACTTGCTATCTTCAGCCTACTCCACTGCAACTTCAGGGAGATACGACTTG
66 CTCCAGGGAAATAAGACTTGCTATCTTCAGCCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
64343955 T
131 T
64343956 AATTTCAACC
Statistics
Matches: 245, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
136 2 0.01
137 243 0.99
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (137 bp):
CTGCTCTACTGCAACTTCAGAGAGATAAGATCTACAATTTATAGCTTCAATCTGTTCCACTGCAA
CTCCAGGGAAATAAGACTTGCTATCTTCAGCCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
TTTTGAT
Found at i:64355613 original size:256 final size:256
Alignment explanation
Indices: 64355151--64355613 Score: 678
Period size: 256 Copynumber: 1.8 Consensus size: 256
64355141 CGAAGTGGAT
*
64355151 ATTAAGATTCTCTTGTTCCGAAGAAATAAAATATCACATCCAGCACGTAGCACACGACATTTCAA
1 ATTAAGATTATCTTGTTCCGAAGAAATAAAATATCACATCCAGCACGTAGCACACGACATTTCAA
* * *
64355216 ACCTTCGATGCCAAAATCATCTCATGATTTCCAAAACTTATGCATTGAAACTTTAAAAGGATATT
66 ACCTTCAATGCCAAAATCATCTCATGATTCCCAAAACTTATACATTGAAACTTTAAAAGGATATT
* * *
64355281 CAGTGGTTCGGTCAAACGAAAAATCGAAACCCAACATGTAGGGCACAATTTCTCGAAATTTCCAA
131 CAGTGGTTCGGCCAAACGAAAAATCGAAACCCAACACGTAGGGCACAATTTATCGAAATTTCCAA
*
64355346 ATACAAAATATTACCATTTTTTTAAAAAAAAACTCGAATAAAAATGCAATTGTATGAAACA
196 ACACAAAATATTACCATTTTTTTAAAAAAAAACTCGAATAAAAATGCAATTGTATGAAACA
* * ** *
64355407 ATTAAGATTATTTTGTTTCGAAGAAATAAAATATCACATCCAGCACGTAGGGCACGATATTTCAA
1 ATTAAGATTATCTTGTTCCGAAGAAATAAAATATCACATCCAGCACGTAGCACACGACATTTCAA
* * * *
64355472 ACCTTCAATTCCAAAATCATCTCATGATTCCCAAGACTT-TACTTTGAAATTTTGAAAAGGATAT
66 ACCTTCAATGCCAAAATCATCTCATGATTCCCAAAACTTATACATTGAAACTTT-AAAAGGATAT
** * * *
64355536 TTGGTTGTTCGGCCAAACGATAAATCGCAACCCAACACGTAGGGCACAATTTATC-AGAATTTCC
130 TCAGTGGTTCGGCCAAACGAAAAATCGAAACCCAACACGTAGGGCACAATTTATCGA-AATTTCC
* *
64355600 AAACGCGAAATATT
194 AAACACAAAATATT
64355614 GCCTTCAACT
Statistics
Matches: 181, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
255 12 0.07
256 169 0.93
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (256 bp):
ATTAAGATTATCTTGTTCCGAAGAAATAAAATATCACATCCAGCACGTAGCACACGACATTTCAA
ACCTTCAATGCCAAAATCATCTCATGATTCCCAAAACTTATACATTGAAACTTTAAAAGGATATT
CAGTGGTTCGGCCAAACGAAAAATCGAAACCCAACACGTAGGGCACAATTTATCGAAATTTCCAA
ACACAAAATATTACCATTTTTTTAAAAAAAAACTCGAATAAAAATGCAATTGTATGAAACA
Found at i:64356729 original size:20 final size:21
Alignment explanation
Indices: 64356689--64356729 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
64356679 GGGTTAAATC
*
64356689 GGAATCAAAACGGAATTAAAA
1 GGAATCAAAACGGAATAAAAA
*
64356710 GGAA-CAAAATGGAATAAAAA
1 GGAATCAAAACGGAATAAAAA
64356730 CAAAATGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.61, C:0.07, G:0.20, T:0.12
Consensus pattern (21 bp):
GGAATCAAAACGGAATAAAAA
Found at i:64377457 original size:29 final size:29
Alignment explanation
Indices: 64377390--64377514 Score: 162
Period size: 29 Copynumber: 4.3 Consensus size: 29
64377380 AAGTCTACAT
* *
64377390 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
64377418 TCATTTATATGGCCTATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
64377447 ACATTCGTATGGCCCAATAGGCCAAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
64377476 ACATTCATATGGCCCATCAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
64377505 ACATTCATAT
1 ACATTCATAT
64377515 ACATGCTTTC
Statistics
Matches: 81, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 19 0.23
29 62 0.77
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:64377766 original size:16 final size:16
Alignment explanation
Indices: 64377725--64377775 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
64377715 GTAGCCAAAC
64377725 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
**
64377741 TTTCACCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
* *
64377757 TTTTGGCTTTTCGGGA
1 TTTCGGCTTTTCGGCA
64377773 TTT
1 TTT
64377776 GCCGATCTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.08, C:0.22, G:0.22, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:64379202 original size:49 final size:50
Alignment explanation
Indices: 64379120--64379354 Score: 262
Period size: 49 Copynumber: 4.7 Consensus size: 50
64379110 TGATCTATTG
* * *
64379120 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATAA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
* * *
64379170 TT-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATC-CGTACCCGATAA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA-CGTGTACCAGATAA
* ** * * **
64379219 CTTCA-ATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGG
1 -TT-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
* * *
64379270 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
*
64379320 TT-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
64379355 TGCGTACTAA
Statistics
Matches: 153, Mismatches: 26, Indels: 13
0.80 0.14 0.07
Matches are distributed among these distances:
49 71 0.46
50 48 0.31
51 34 0.22
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
Found at i:64379313 original size:101 final size:98
Alignment explanation
Indices: 64379125--64379354 Score: 275
Period size: 100 Copynumber: 2.3 Consensus size: 98
64379115 TATTGTTAGG
* *
64379125 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTAAATAATTGGTCACATGTGTAGTACT
64379190 AAGTGCAGGCTACTATCCGTACCCGATAACTTCAA
66 AAGTGCAGGCTACTATCCGTACCCGATAA-TT-AA
* * ** *
64379225 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAAATGGTTAGGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACT-AAATAATT-GGTCACATGTGTAGTA
* * * **
64379289 CTAAGTGTAGGCTACTA-CGTGTACCGGATAATTGG
64 CTAAGTGCAGGCTACTATC-CGTACCCGATAATTAA
* *
64379324 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
64379355 TGCGTACTAA
Statistics
Matches: 112, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
99 29 0.26
100 43 0.38
101 40 0.36
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTAAATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATCCGTACCCGATAATTAA
Found at i:64382502 original size:28 final size:28
Alignment explanation
Indices: 64382471--64382525 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
64382461 AGGGTGTTAC
64382471 AGGCACTGATTCAATTTTCAATTTAGAA
1 AGGCACTGATTCAATTTTCAATTTAGAA
64382499 AGGCACTGATTCAATTTTCAATTTAGA
1 AGGCACTGATTCAATTTTCAATTTAGA
64382526 CATCTTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.36
Consensus pattern (28 bp):
AGGCACTGATTCAATTTTCAATTTAGAA
Found at i:64383140 original size:29 final size:29
Alignment explanation
Indices: 64383098--64383157 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
64383088 ATTTACTCGA
*
64383098 CCTTGCACTATGAAATTGTTCTTTCTCAG
1 CCTTGCACTATGAAATTATTCTTTCTCAG
64383127 CCTTGCACTATGAAATTATTCTTTCTCAG
1 CCTTGCACTATGAAATTATTCTTTCTCAG
64383156 CC
1 CC
64383158 ATCTCAGGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.22, C:0.27, G:0.12, T:0.40
Consensus pattern (29 bp):
CCTTGCACTATGAAATTATTCTTTCTCAG
Found at i:64384617 original size:31 final size:32
Alignment explanation
Indices: 64384576--64384641 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 32
64384566 TTTAAATTAG
*
64384576 TTAATTAGATA-AATATTATTTTATTAATATT
1 TTAATGAGATATAATATTATTTTATTAATATT
* *
64384607 TTAATGAGATATTTATTATTATTTTATTATTATT
1 TTAATGAGATA--TAATATTATTTTATTAATATT
64384641 T
1 T
64384642 ATTCAGTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 10 0.34
34 19 0.66
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (32 bp):
TTAATGAGATATAATATTATTTTATTAATATT
Found at i:64388853 original size:39 final size:39
Alignment explanation
Indices: 64388780--64388886 Score: 112
Period size: 39 Copynumber: 2.8 Consensus size: 39
64388770 GTTCAATGTC
* *
64388780 TACTGATTCTACT-AA-AC-TGCTCAAATGAGCAATATA
1 TACTGATTCTACTGAATACTTGCTCAAACGAGAAATATA
* * *
64388816 TACTAATTCTACTGAATACTTGCTCAAGCGAGAAATATC
1 TACTGATTCTACTGAATACTTGCTCAAACGAGAAATATA
* * * *
64388855 CACTGATTATACTGAATGCTTACTCAAACGAG
1 TACTGATTCTACTGAATACTTGCTCAAACGAG
64388887 CATTACCCAC
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
36 12 0.21
37 2 0.04
38 2 0.04
39 41 0.72
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (39 bp):
TACTGATTCTACTGAATACTTGCTCAAACGAGAAATATA
Found at i:64388897 original size:39 final size:39
Alignment explanation
Indices: 64388825--64388911 Score: 111
Period size: 39 Copynumber: 2.2 Consensus size: 39
64388815 ATACTAATTC
* * *
64388825 TACTGAATACTTGCTCAAGCGAGAAATATCCACTGATTA
1 TACTGAATACTTACTCAAACGAGAAATACCCACTGATTA
* * * *
64388864 TACTGAATGCTTACTCAAACGAGCATTACCCACTTATTA
1 TACTGAATACTTACTCAAACGAGAAATACCCACTGATTA
64388903 TACTGAATA
1 TACTGAATA
64388912 AGATTTTTTG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.30
Consensus pattern (39 bp):
TACTGAATACTTACTCAAACGAGAAATACCCACTGATTA
Found at i:64391383 original size:42 final size:42
Alignment explanation
Indices: 64391336--64391419 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
64391326 AATTCACCCC
* *
64391336 TTTCCCTTCCATCCTTGCAGGTGAGCCCTAGTTAGTGGACTT
1 TTTCCCTACCATCCTTGCAGGTGAGCCCTAGTTAGTAGACTT
*
64391378 TTTCCCTACCATCCTTGCAGGTGAGCCCTAGTTGGTAGACTT
1 TTTCCCTACCATCCTTGCAGGTGAGCCCTAGTTAGTAGACTT
64391420 GGAGCTGGAC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.15, C:0.29, G:0.21, T:0.35
Consensus pattern (42 bp):
TTTCCCTACCATCCTTGCAGGTGAGCCCTAGTTAGTAGACTT
Found at i:64394117 original size:34 final size:34
Alignment explanation
Indices: 64394074--64394142 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
64394064 TACCTTAGTA
64394074 TCCAACACATACGCAAGATAAGCATCATATCCCT
1 TCCAACACATACGCAAGATAAGCATCATATCCCT
64394108 TCCAACACATACGCAAGATAAGCATCATATCCCT
1 TCCAACACATACGCAAGATAAGCATCATATCCCT
64394142 T
1 T
64394143 TCTAACATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.38, C:0.32, G:0.09, T:0.22
Consensus pattern (34 bp):
TCCAACACATACGCAAGATAAGCATCATATCCCT
Found at i:64407377 original size:47 final size:46
Alignment explanation
Indices: 64407260--64407383 Score: 148
Period size: 46 Copynumber: 2.7 Consensus size: 46
64407250 CCACCCATAA
*
64407260 ACGAACTCGGACTCAACTCAACGAGCTCGG-GCGTTCGCATCCATC
1 ACGAACTCGGACTCAACTCAACGAGCTCGGAGCGTTCACATCCATC
*
64407305 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TC
1 A-CGAACTCGGACTCAACTCAACGAGCTCGGA-G-C--GTTCACATCCATC
*
64407353 ACGAACTCGGACTCAACTCAACGAGTTCGGA
1 ACGAACTCGGACTCAACTCAACGAGCTCGGA
64407384 ACTCAACCAT
Statistics
Matches: 69, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
45 1 0.01
46 28 0.41
47 28 0.41
48 4 0.06
49 2 0.03
50 3 0.04
51 3 0.04
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.19
Consensus pattern (46 bp):
ACGAACTCGGACTCAACTCAACGAGCTCGGAGCGTTCACATCCATC
Found at i:64411688 original size:47 final size:47
Alignment explanation
Indices: 64411618--64411707 Score: 144
Period size: 47 Copynumber: 1.9 Consensus size: 47
64411608 CATGCTAGGG
* *
64411618 TTCATGTTTAAAAATTTACCCATGCATGAGTTACTTGAATTTTGGGA
1 TTCATGTTCAAAAATTTAACCATGCATGAGTTACTTGAATTTTGGGA
* *
64411665 TTCATGTTCAAAAATTTAACCATGCATGATTTACTTGTATTTT
1 TTCATGTTCAAAAATTTAACCATGCATGAGTTACTTGAATTTT
64411708 ATGTTTTATG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (47 bp):
TTCATGTTCAAAAATTTAACCATGCATGAGTTACTTGAATTTTGGGA
Found at i:64413721 original size:20 final size:20
Alignment explanation
Indices: 64413674--64413724 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
64413664 GGGGTGATTG
*
64413674 CACGGGCATGTCCCAAGTCA
1 CACGGGCGTGTCCCAAGTCA
64413694 CACGGGCGTGTCCCAAGTCA
1 CACGGGCGTGTCCCAAGTCA
64413714 CACGGGCGTGT
1 CACGGGCGTGT
64413725 GACACTTCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (20 bp):
CACGGGCGTGTCCCAAGTCA
Found at i:64419714 original size:39 final size:40
Alignment explanation
Indices: 64419604--64419735 Score: 187
Period size: 40 Copynumber: 3.3 Consensus size: 40
64419594 GCTACTCGTT
* * * *
64419604 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCGCA
*
64419644 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
*
64419684 CAAATGCCTTCGGG-CTTAACCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
64419723 CAAATGCCTTCGG
1 CAAATGCCTTCGG
64419736 ATCTTAGTCC
Statistics
Matches: 86, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
39 36 0.42
40 48 0.56
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:64419748 original size:79 final size:80
Alignment explanation
Indices: 64419632--64419781 Score: 198
Period size: 79 Copynumber: 1.9 Consensus size: 80
64419622 AGCCCGGTTA
* *
64419632 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTCG
64419696 GG-CTTAACCCGGAAT
65 GGACTTAACCCGGAAT
* ** * *
64419711 TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCG
64419775 GGACTTA
65 GGACTTA
64419782 GCCCAGACAT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
78 3 0.05
79 46 0.75
80 12 0.20
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAACCCGGAAT
Found at i:64427759 original size:37 final size:37
Alignment explanation
Indices: 64427698--64427776 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
64427688 TTATTACGAA
* * *
64427698 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
* *
64427735 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
64427772 GTCTT
1 GTCTT
64427777 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:64428053 original size:49 final size:49
Alignment explanation
Indices: 64427998--64428293 Score: 592
Period size: 49 Copynumber: 6.0 Consensus size: 49
64427988 CTCGGCCCTG
64427998 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
64428047 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
64428096 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
64428145 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
64428194 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
64428243 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
64428292 AC
1 AC
64428294 GTATACACAC
Statistics
Matches: 247, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 247 1.00
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
Found at i:64432896 original size:45 final size:45
Alignment explanation
Indices: 64432794--64433012 Score: 322
Period size: 45 Copynumber: 5.0 Consensus size: 45
64432784 TTTTATCGAA
*
64432794 TCACCGGCATT-TAGCCTGCTAGGCTCAAA-G-CCGGATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATT
* *
64432836 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
* *
64432881 TCACCGGTATTATAG-CTGCTAGGCTCAAAGGCCCAAATAGTATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
*
64432925 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
* *
64432970 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCTGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
64433013 CTGTACGATA
Statistics
Matches: 161, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
42 11 0.07
43 17 0.11
44 40 0.25
45 92 0.57
46 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
Found at i:64432944 original size:89 final size:90
Alignment explanation
Indices: 64432794--64433012 Score: 322
Period size: 89 Copynumber: 2.5 Consensus size: 90
64432784 TTTTATCGAA
* *
64432794 TCACCGGCATT-TAGCCTGCTAGGCTCAAA-G-CCGGATA-TCATTTCACCGGCATTATAGCCTG
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATTTCACCGGCATCATAGCCTG
*
64432855 CTAGGCTCGAAGGCCCGAATAGTATC
65 CTAGGCTCAAAGGCCCGAATAGTATC
* *
64432881 TCACCGGTATTATAG-CTGCTAGGCTCAAAGGCCCAAATAGTATTTCACCGGCATCATAGCCTGC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATCATAGCCTGC
*
64432945 TAGGCTCAAAGGCCCGAATAGTATT
66 TAGGCTCAAAGGCCCGAATAGTATC
* *
64432970 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCTGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
64433013 CTGTACGATA
Statistics
Matches: 117, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
87 24 0.21
88 4 0.03
89 63 0.54
90 26 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (90 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATCATAGCCTGC
TAGGCTCAAAGGCCCGAATAGTATC
Found at i:64435271 original size:24 final size:25
Alignment explanation
Indices: 64435239--64435288 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
64435229 AAGAAAGTGA
* *
64435239 AGAACAATGAAAGGGAA-TGAAGAG
1 AGAAAAATGAAAGAGAAGTGAAGAG
*
64435263 AGAAAAATGAGAGAGAAGTGAAGAG
1 AGAAAAATGAAAGAGAAGTGAAGAG
64435288 A
1 A
64435289 TAAGAAGGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.56, C:0.02, G:0.34, T:0.08
Consensus pattern (25 bp):
AGAAAAATGAAAGAGAAGTGAAGAG
Found at i:64456908 original size:40 final size:39
Alignment explanation
Indices: 64456852--64456995 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 39
64456842 GGATGGTAAC
* * *
64456852 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
64456891 CTGGGCTAAG-CTCCGAAGGCATTTGTGCGAGTTACTATATA
1 C-GGGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTA-ATA
64456932 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-A
64456971 CCGGGCTAAGTCCCGAAGGCATTTG
1 -CGGGCTAAGTCCCGAAGGCATTTG
64456996 AGCAAGTAGT
Statistics
Matches: 96, Mismatches: 3, Indels: 11
0.87 0.03 0.10
Matches are distributed among these distances:
38 2 0.02
39 3 0.03
40 87 0.91
41 4 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:64457295 original size:22 final size:21
Alignment explanation
Indices: 64457254--64457297 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
64457244 GAATGTGCAT
64457254 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
64457276 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
64457298 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:64459322 original size:22 final size:23
Alignment explanation
Indices: 64459297--64459339 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
64459287 AAAGCCGAGG
64459297 AGCTCAGTAT-GGAG-AAAAGAAA
1 AGCTCA-TATGGGAGCAAAAGAAA
*
64459319 AGCTGATATGGGAGCAAAAGA
1 AGCTCATATGGGAGCAAAAGA
64459340 GTTTCGTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 3 0.17
22 9 0.50
23 6 0.33
ACGTcount: A:0.47, C:0.09, G:0.30, T:0.14
Consensus pattern (23 bp):
AGCTCATATGGGAGCAAAAGAAA
Found at i:64463030 original size:28 final size:27
Alignment explanation
Indices: 64462992--64463145 Score: 128
Period size: 28 Copynumber: 5.5 Consensus size: 27
64462982 AACCGATCTT
64462992 GCACACACAGTGCTCGGTTACAGAACTC
1 GCACACACAGTGCTCGGTTAC-GAACTC
**** *
64463020 GCACACACAGTGCCTCAACAACCGATCTC
1 GCACACACAGTG-CTCGGTTA-CGAACTC
*
64463049 GCACACACAATGCTCGGTTACGGAACTC
1 GCACACACAGTGCTCGGTTAC-GAACTC
* **** * *
64463077 GCACACACAATGCCTCAACAACCATCTC
1 GCACACACAGTG-CTCGGTTACGAACTC
64463105 GCACACACAGTGCTCGGTTACGAAACTC
1 GCACACACAGTGCTCGGTTACG-AACTC
*
64463133 ACACACACAGTGC
1 GCACACACAGTGC
64463146 CTATGTTCAC
Statistics
Matches: 96, Mismatches: 25, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
27 6 0.06
28 64 0.67
29 25 0.26
30 1 0.01
ACGTcount: A:0.31, C:0.36, G:0.17, T:0.16
Consensus pattern (27 bp):
GCACACACAGTGCTCGGTTACGAACTC
Found at i:64463039 original size:57 final size:56
Alignment explanation
Indices: 64462965--64463147 Score: 287
Period size: 57 Copynumber: 3.2 Consensus size: 56
64462955 TTACTTTGTT
* *
64462965 ACACACAGTGCCCCAACAACCGATCTTGCACACACAGTGCTCGGTTACAGAACTCGC
1 ACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTAC-GAACTCGC
*
64463022 ACACACAGTGCCTCAACAACCGATCTCGCACACACAATGCTCGGTTACGGAACTCGC
1 ACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTAC-GAACTCGC
* *
64463079 ACACACAATGCCTCAACAACC-ATCTCGCACACACAGTGCTCGGTTACGAAACTCAC
1 ACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACG-AACTCGC
64463135 ACACACAGTGCCT
1 ACACACAGTGCCT
64463148 ATGTTCACGT
Statistics
Matches: 117, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
55 1 0.01
56 43 0.37
57 73 0.62
ACGTcount: A:0.31, C:0.37, G:0.16, T:0.16
Consensus pattern (56 bp):
ACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTACGAACTCGC
Found at i:64468511 original size:130 final size:130
Alignment explanation
Indices: 64468278--64468537 Score: 403
Period size: 130 Copynumber: 2.0 Consensus size: 130
64468268 CACTCAAAAA
* * *
64468278 GACCACTTACCTCTGTGAAAACTGAAAGAATGAAACTACATCACTGAAGCAACATATAAGCAACA
1 GACCACTTACCTCTGTGAAAACTGAAAGAATAAAACTACATCACTGAAACAACATACAAGCAACA
* * * **
64468343 ATTACCGAGATGTAACTGGCAATAACAAGGGATGACAAAAGAGATGTAAGAAGAAGAACACCAGT
66 ATTACCAAGATGTAACTAGCAATAACAAGGGACGACAAAAGAGATAAAAGAAGAAGAACACCAGT
* * *
64468408 GACCACTTACCTTTGTGGAAACTGAAAGAATAAAACTACATCACTGAAACAACGTACAAGCAACA
1 GACCACTTACCTCTGTGAAAACTGAAAGAATAAAACTACATCACTGAAACAACATACAAGCAACA
* *
64468473 GTTACCAAGATGTAACTAGCAATGACAAGGGACGACAAAAGAGATAAAAGAAGAAGAACACCAGT
66 ATTACCAAGATGTAACTAGCAATAACAAGGGACGACAAAAGAGATAAAAGAAGAAGAACACCAGT
64468538 AGCAATTGCA
Statistics
Matches: 117, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
130 117 1.00
ACGTcount: A:0.46, C:0.19, G:0.19, T:0.16
Consensus pattern (130 bp):
GACCACTTACCTCTGTGAAAACTGAAAGAATAAAACTACATCACTGAAACAACATACAAGCAACA
ATTACCAAGATGTAACTAGCAATAACAAGGGACGACAAAAGAGATAAAAGAAGAAGAACACCAGT
Found at i:64468557 original size:130 final size:130
Alignment explanation
Indices: 64468296--64468572 Score: 358
Period size: 130 Copynumber: 2.1 Consensus size: 130
64468286 ACCTCTGTGA
* * * * *
64468296 AAACTGAAAGAATGAAACTACATCACTGAAGCAACATATAAGCAACAATTACCGAGATGTAACTG
1 AAACTGAAAGAATAAAACTACATCACTGAAACAACATACAAGCAACAATTACCAAGATGTAACTA
* ** * *** *
64468361 GCAATAACAAGGGATGACAAAAGAGATGTAAGAAGAAGAACACCAGTGACCACTTACCTTTGTGG
66 GCAATAACAAGGGACGACAAAAGAGATAAAAGAAGAAGAACACCAGTGACCAATTACAGCTATGG
* *
64468426 AAACTGAAAGAATAAAACTACATCACTGAAACAACGTACAAGCAACAGTTACCAAGATGTAACTA
1 AAACTGAAAGAATAAAACTACATCACTGAAACAACATACAAGCAACAATTACCAAGATGTAACTA
* * *
64468491 GCAATGACAAGGGACGACAAAAGAGATAAAAGAAGAAGAACACCAGT-AGCAATTGCAAGCTATG
66 GCAATAACAAGGGACGACAAAAGAGATAAAAGAAGAAGAACACCAGTGACCAATTAC-AGCTATG
64468555 G
130 G
* *
64468556 AAACCGAAAGAAAAAAA
1 AAACTGAAAGAATAAAA
64468573 AGAAAAAAAA
Statistics
Matches: 126, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
129 6 0.05
130 120 0.95
ACGTcount: A:0.49, C:0.17, G:0.19, T:0.15
Consensus pattern (130 bp):
AAACTGAAAGAATAAAACTACATCACTGAAACAACATACAAGCAACAATTACCAAGATGTAACTA
GCAATAACAAGGGACGACAAAAGAGATAAAAGAAGAAGAACACCAGTGACCAATTACAGCTATGG
Found at i:64471768 original size:13 final size:13
Alignment explanation
Indices: 64471725--64471777 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
64471715 CATGGAATGG
64471725 AAATTTTA-TTTT
1 AAATTTTAGTTTT
*
64471737 --ATTTTACTTATT
1 AAATTTTAGTT-TT
64471749 AAAATTTTAGTTTT
1 -AAATTTTAGTTTT
64471763 AAATTTTAGTTTT
1 AAATTTTAGTTTT
64471776 AA
1 AA
64471778 TAATTCACAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
10 6 0.17
11 2 0.06
12 2 0.06
13 15 0.43
14 2 0.06
15 8 0.23
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (13 bp):
AAATTTTAGTTTT
Found at i:64472008 original size:13 final size:13
Alignment explanation
Indices: 64471990--64472042 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
64471980 CATAGAATTA
64471990 TTAAAACTAAAAT
1 TTAAAACTAAAAT
64472003 TTAAAACTAAAATT
1 TTAAAACTAAAA-T
*
64472017 TTAATAAGTAAAA-
1 TTAA-AACTAAAAT
64472030 -TAAAA-TAAAAT
1 TTAAAACTAAAAT
64472041 TT
1 TT
64472043 CCATTCCATG
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
10 5 0.14
11 2 0.06
12 4 0.11
13 12 0.34
14 5 0.14
15 7 0.20
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (13 bp):
TTAAAACTAAAAT
Found at i:64472030 original size:15 final size:14
Alignment explanation
Indices: 64471985--64472030 Score: 58
Period size: 13 Copynumber: 3.2 Consensus size: 14
64471975 ACAAGCATAG
64471985 AATTATTAAAACTAA
1 AATT-TTAAAACTAA
64472000 AA-TTTAAAACTAA
1 AATTTTAAAACTAA
*
64472013 AATTTTAATAAGTAA
1 AATTTTAA-AACTAA
64472028 AAT
1 AAT
64472031 AAAATAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 12 0.43
14 6 0.21
15 10 0.36
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (14 bp):
AATTTTAAAACTAA
Found at i:64481580 original size:93 final size:93
Alignment explanation
Indices: 64481473--64481643 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
64481463 GCCCCTAAGT
* *
64481473 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64481538 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
64481566 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64481631 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64481644 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64481640 original size:46 final size:46
Alignment explanation
Indices: 64481468--64481640 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
64481458 AACCCGCCCC
* * *
64481468 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
64481514 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
64481562 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
64481607 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
64481641 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:64482097 original size:30 final size:30
Alignment explanation
Indices: 64482063--64482122 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
64482053 ATTTAATACG
64482063 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
64482093 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
64482123 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:64489171 original size:93 final size:93
Alignment explanation
Indices: 64489064--64489234 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
64489054 GCCCCTAAGT
* *
64489064 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64489129 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
64489157 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64489222 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64489235 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64489231 original size:46 final size:46
Alignment explanation
Indices: 64489059--64489231 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
64489049 AACCCGCCCC
* * *
64489059 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
64489105 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
64489153 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
64489198 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
64489232 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:64489688 original size:30 final size:30
Alignment explanation
Indices: 64489654--64489713 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
64489644 ATTTAATATG
64489654 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
64489684 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
64489714 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:64494965 original size:71 final size:71
Alignment explanation
Indices: 64494881--64495025 Score: 290
Period size: 71 Copynumber: 2.0 Consensus size: 71
64494871 TTAAAACAAT
64494881 TTGCATATTTGTGTGTATTTTGTTAAAACGTTTCATTCGTTTTGAAAACTCGTTATCCCTACTAC
1 TTGCATATTTGTGTGTATTTTGTTAAAACGTTTCATTCGTTTTGAAAACTCGTTATCCCTACTAC
64494946 TAGCTG
66 TAGCTG
64494952 TTGCATATTTGTGTGTATTTTGTTAAAACGTTTCATTCGTTTTGAAAACTCGTTATCCCTACTAC
1 TTGCATATTTGTGTGTATTTTGTTAAAACGTTTCATTCGTTTTGAAAACTCGTTATCCCTACTAC
64495017 TAGCTG
66 TAGCTG
64495023 TTG
1 TTG
64495026 TAAATAAAAA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.22, C:0.17, G:0.16, T:0.46
Consensus pattern (71 bp):
TTGCATATTTGTGTGTATTTTGTTAAAACGTTTCATTCGTTTTGAAAACTCGTTATCCCTACTAC
TAGCTG
Found at i:64499183 original size:43 final size:43
Alignment explanation
Indices: 64499111--64499263 Score: 229
Period size: 43 Copynumber: 3.6 Consensus size: 43
64499101 GTTAAATCCC
* * *
64499111 GCAGGCTTCATGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
64499152 GCAGGCTTCGTACCGGTGATGTGTATTCGGGCCTTTGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
64499195 GCAGGCTTTGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
64499238 GCAGGCTTCGCGCCGGTGATGTGTAT
1 GCAGGCTTCGTGCCGGTGATGTGTAT
64499264 CTGAATATGT
Statistics
Matches: 100, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
41 14 0.14
42 2 0.02
43 84 0.84
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.32
Consensus pattern (43 bp):
GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:64504455 original size:40 final size:40
Alignment explanation
Indices: 64504411--64504526 Score: 180
Period size: 40 Copynumber: 2.9 Consensus size: 40
64504401 GGATATAGCT
* *
64504411 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
64504451 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
64504491 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
64504527 CATCCGAATA
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
39 2 0.03
40 65 0.94
41 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:64506186 original size:68 final size:68
Alignment explanation
Indices: 64506112--64506250 Score: 269
Period size: 68 Copynumber: 2.0 Consensus size: 68
64506102 ATTTACTAAA
*
64506112 TCGAAACTTAAAACTTTCACACATTCATAATCACCTATTTTAGACAATAAATATCATATTCAAAT
1 TCGAAACTTAAAACTTTCACACATTCATAATCACATATTTTAGACAATAAATATCATATTCAAAT
64506177 AAT
66 AAT
64506180 TCGAAACTTAAAACTTTCACACATTCATAATCACATATTTTAGACAATAAATATCATATTCAAAT
1 TCGAAACTTAAAACTTTCACACATTCATAATCACATATTTTAGACAATAAATATCATATTCAAAT
64506245 AAT
66 AAT
64506248 TCG
1 TCG
64506251 GTGACTCGGT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 70 1.00
ACGTcount: A:0.44, C:0.19, G:0.04, T:0.34
Consensus pattern (68 bp):
TCGAAACTTAAAACTTTCACACATTCATAATCACATATTTTAGACAATAAATATCATATTCAAAT
AAT
Found at i:64508105 original size:25 final size:25
Alignment explanation
Indices: 64508077--64508124 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
64508067 GCAGTACAGT
*
64508077 CTATCTATAGCGGTTTCAGTTTATG
1 CTATCTATAGCAGTTTCAGTTTATG
64508102 CTATCTATAGCAGTTTCAGTTTA
1 CTATCTATAGCAGTTTCAGTTTA
64508125 AAACACATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.44
Consensus pattern (25 bp):
CTATCTATAGCAGTTTCAGTTTATG
Found at i:64513203 original size:16 final size:17
Alignment explanation
Indices: 64513171--64513205 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
64513161 TTAAGATAAG
*
64513171 TATTAAATTTAATTAAA
1 TATTAAATCTAATTAAA
64513188 TATTAAATCT-ATTAAA
1 TATTAAATCTAATTAAA
64513204 TA
1 TA
64513206 ATATTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
TATTAAATCTAATTAAA
Found at i:64516257 original size:41 final size:41
Alignment explanation
Indices: 64516200--64516281 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
64516190 AATGGATAAG
* *
64516200 AGTATGCGGGTAGACTTTAGCATGGCTACTGGAGAGAAGGT
1 AGTATGCGGATAGACTTTAGCATGGCTACTAGAGAGAAGGT
64516241 AGTATGCGGATAGACTTTAGCATGGCTACTAGAGAGAAGGT
1 AGTATGCGGATAGACTTTAGCATGGCTACTAGAGAGAAGGT
64516282 CTCATCGTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.29, C:0.12, G:0.34, T:0.24
Consensus pattern (41 bp):
AGTATGCGGATAGACTTTAGCATGGCTACTAGAGAGAAGGT
Found at i:64528938 original size:26 final size:26
Alignment explanation
Indices: 64528902--64529011 Score: 148
Period size: 26 Copynumber: 4.2 Consensus size: 26
64528892 TGATACAAAT
*
64528902 TGATAATAGGTTAGGTAGATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
64528928 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * * *
64528954 TTACAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
64528980 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
64529006 TGATAA
1 TGATAA
64529012 GAATTTCATG
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Done.