Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 189 of 290
Found at i:64835430 original size:45 final size:45
Alignment explanation
Indices: 64835335--64835431 Score: 104
Period size: 45 Copynumber: 2.2 Consensus size: 45
64835325 TACATGTAAG
* * * * ** *
64835335 CACATATATTGATGCCAACATCTCAGATGTGGTCTTAGATGAAAG
1 CACATATATCGATGCCAACATCCCAGACGTGGTCTTACACAAAAA
* * *
64835380 TACATATATCGATGCCAACGTCCCAGACGTGTTCTTACACAAAAA
1 CACATATATCGATGCCAACATCCCAGACGTGGTCTTACACAAAAA
64835425 CACATAT
1 CACATAT
64835432 CAGACTCCTA
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (45 bp):
CACATATATCGATGCCAACATCCCAGACGTGGTCTTACACAAAAA
Found at i:64836296 original size:27 final size:27
Alignment explanation
Indices: 64836258--64836399 Score: 171
Period size: 27 Copynumber: 5.3 Consensus size: 27
64836248 TGTAGACTAG
* * *
64836258 AATTACTAAAATACCCCTGGTTTATAA
1 AATTACCAAAATACCCCTGATTTGTAA
*
64836285 AATTACCAAAATA-CCCTAGGTTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
*
64836312 AATTACCAAAATACCCCTGATTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
*
64836339 AATTACCAAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
* * *
64836366 AATTACCAAAGTACCCCTGATTTATAG
1 AATTACCAAAATACCCCTGATTTGTAA
64836393 AATTACC
1 AATTACC
64836400 GTTTTACCCT
Statistics
Matches: 101, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
26 8 0.08
27 85 0.84
28 8 0.08
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:64836342 original size:54 final size:54
Alignment explanation
Indices: 64836258--64836399 Score: 203
Period size: 54 Copynumber: 2.6 Consensus size: 54
64836248 TGTAGACTAG
* * **
64836258 AATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTAGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTAGACTTGTAA
* * *
64836312 AATTACCAAAATACCCCTGATTTGTGAAATTACCAAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTAGACTTGTAA
* *
64836366 AATTACCAAAGTACCCCTGATTTATAGAATTACC
1 AATTACCAAAATACCCCTGATTTATAAAATTACC
64836400 GTTTTACCCT
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 77 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTAGACTTGTAA
Found at i:64836422 original size:54 final size:54
Alignment explanation
Indices: 64836258--64836437 Score: 173
Period size: 54 Copynumber: 3.3 Consensus size: 54
64836248 TGTAGACTAG
* * * * ** **
64836258 AATTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTAGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTATGAAATTACCAAAATACCCTCGACTTACAA
* **
64836312 AATTACCAAAATACCCCTGATTTGTGAAATTACCAAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCCTGATTTATGAAATTACCAAAATACCCTCGACTTACAA
* **** *
64836366 AATTACCAAAGTACCCCTGATTTAT-AGAATTACCGTTTTACCCTCGATTTACAA
1 AATTACCAAAATACCCCTGATTTATGA-AATTACCAAAATACCCTCGACTTACAA
**
64836420 AATTATTAAAATACCCCT
1 AATTACCAAAATACCCCT
64836438 ATAGGGTAGA
Statistics
Matches: 106, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 1 0.01
54 105 0.99
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGATTTATGAAATTACCAAAATACCCTCGACTTACAA
Found at i:64836450 original size:27 final size:27
Alignment explanation
Indices: 64836428--64836560 Score: 160
Period size: 27 Copynumber: 4.9 Consensus size: 27
64836418 AAAATTATTA
* *
64836428 AAATACCCCTATAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
64836455 AAATACCCCTGTAGGATAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
64836482 AAATACCCTTGTAGGGTAGAAATATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
64836509 AAATACCCCTGTAGGGTAGAATTACC-
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
64836535 AAGATGCCCTTGTGGGGTAAAATTAC
1 AA-ATACCCCTGTAGGGTAGAATTAC
64836561 AATTTTTTCC
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 2 0.02
27 89 0.98
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:64837127 original size:22 final size:22
Alignment explanation
Indices: 64837075--64837139 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
64837065 GCCAATTATT
* *
64837075 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
64837097 CT-ACATATGACTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
64837119 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
64837140 ATGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:64837293 original size:216 final size:217
Alignment explanation
Indices: 64836912--64837307 Score: 530
Period size: 216 Copynumber: 1.8 Consensus size: 217
64836902 GTTACCGAAT
*
64836912 GCTGTGTGCCAAACGTATTTGCCTAAGGCTATGTGCCAATATATGATTATTGACGACTCTGTGTT
1 GCTGTGTGCCAAACGTATTTGCCTAAGGCTATGTGCCAATATATGATTATTGACGACTCTGTGTC
* * *
64836977 GATCATATTTACTCAAGGCTGTGTGCAGACTATATTACCGTCGCTGATGGCTATGTGCCTAACAT
66 GATCACATTTACTCAAGGCTGTGTGCAGACTATATTACCGTAGCTGATGACTATGTGCCTAACAT
* *
64837042 GATACAGCTACCGATGGCTTAAAGCCAATTATTCTGATT-A-TGGCTTTGCGCCAACCTACATAT
131 AATACAGCTACCGATGGCTTAAAGCCAAGTATTCTG-TTAAGTGGCTTTGCGCCAACCTACATAT
64837105 GACTCTGTGCCAACCTGATTATG
195 GACTCTGTGCCAACCTGATTATG
* *
64837128 GCTGTGTGCCAAATGTATTTGCCTAAGGCTATGTGCCAATATATGGTTATTGACGACTCTGTGTC
1 GCTGTGTGCCAAACGTATTTGCCTAAGGCTATGTGCCAATATATGATTATTGACGACTCTGTGTC
* * ** * * *
64837193 GATCACATTTAC-CTAGGGCTGTGTGCCGGTTATGTTACTC-TAGTTGATGACTATGTGCGTAAC
66 GATCACATTTACTC-AAGGCTGTGTGCAGACTATATTAC-CGTAGCTGATGACTATGTGCCTAAC
* * ** *** *
64837256 ATAATGCAGTTATTGATGGCTTTGTGCCACGTATTCTGTTAAGTGGCTTTGC
129 ATAATACAGCTACCGATGGCTTAAAGCCAAGTATTCTGTTAAGTGGCTTTGC
64837308 CACATTATTT
Statistics
Matches: 153, Mismatches: 23, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
215 3 0.02
216 140 0.92
217 10 0.07
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (217 bp):
GCTGTGTGCCAAACGTATTTGCCTAAGGCTATGTGCCAATATATGATTATTGACGACTCTGTGTC
GATCACATTTACTCAAGGCTGTGTGCAGACTATATTACCGTAGCTGATGACTATGTGCCTAACAT
AATACAGCTACCGATGGCTTAAAGCCAAGTATTCTGTTAAGTGGCTTTGCGCCAACCTACATATG
ACTCTGTGCCAACCTGATTATG
Found at i:64837328 original size:27 final size:27
Alignment explanation
Indices: 64837298--64837398 Score: 114
Period size: 27 Copynumber: 3.7 Consensus size: 27
64837288 ATTCTGTTAA
* * *
64837298 GTGGCTTTGCCACATTATTTATTTCTG
1 GTGGCTATGCCACAATATCTATTTCTG
64837325 GTGGCTATGCCACAAATATCTA-TTCTG
1 GTGGCTATGCCAC-AATATCTATTTCTG
* *
64837352 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTATGCCACAATATCTATTTCTG
* * *
64837379 GTGACTCTGTCACAATATCT
1 GTGGCTATGCCACAATATCT
64837399 GTTCCGACAG
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.78
28 6 0.09
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.38
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTATTTCTG
Found at i:64837558 original size:25 final size:24
Alignment explanation
Indices: 64837530--64837658 Score: 58
Period size: 25 Copynumber: 5.5 Consensus size: 24
64837520 CACATTCTGG
64837530 TTCTGATTCTGTTACCTGATACAGA
1 TTCTGATTCTGTTACCTGAT-CAGA
* * *
64837555 TTCTAATTCGGTCACC---T-A-A
1 TTCTGATTCTGTTACCTGATCAGA
*
64837574 TTTTGATTCTGATT--CTGATTCTA-A
1 TTCTGATTCTG-TTACCTGA-TC-AGA
* *
64837598 TTTTGATTCTGTTACCTGATACTGA
1 TTCTGATTCTGTTACCTGAT-CAGA
* * * *
64837623 TTCTGATTTTGTCACCTAACTCTGA
1 TTCTGATTCTGTTACCTGA-TCAGA
64837648 TTCTGATTCTG
1 TTCTGATTCTG
64837659 GGTTCAAACC
Statistics
Matches: 79, Mismatches: 13, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
18 1 0.01
19 9 0.11
20 2 0.03
22 2 0.03
23 2 0.03
24 14 0.18
25 48 0.61
26 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (24 bp):
TTCTGATTCTGTTACCTGATCAGA
Found at i:64837588 original size:6 final size:6
Alignment explanation
Indices: 64837577--64837630 Score: 56
Period size: 6 Copynumber: 8.8 Consensus size: 6
64837567 CACCTAATTT
* * *
64837577 TGATTC TGATTC TGATTC TAATTT TGATTC TG-TTACC TGATAC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC
64837626 TGATT
1 TGATT
64837631 TTGTCACCTA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
5 2 0.05
6 33 0.85
7 3 0.08
8 1 0.03
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.50
Consensus pattern (6 bp):
TGATTC
Found at i:64839806 original size:27 final size:26
Alignment explanation
Indices: 64839762--64839813 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
64839752 CTCGCTACAA
*
64839762 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
64839789 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
64839814 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:64849205 original size:30 final size:30
Alignment explanation
Indices: 64849171--64849231 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
64849161 TCCTTAACTC
64849171 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
64849201 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
64849231 A
1 A
64849232 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:64850707 original size:67 final size:68
Alignment explanation
Indices: 64850599--64850740 Score: 187
Period size: 67 Copynumber: 2.1 Consensus size: 68
64850589 GGAGAAGCAT
* * *
64850599 TCTGGAAGCCTCACTGCAATATGGTGGCCTCGCCAC-ATATATCTGTTCTGGTGGCTTCGTCACA
1 TCTGGAAGCCTCACTGCAATATGGTGGCCTCGCCACAATATATCTGTTCTGGTGGCCTAGCCACA
64850663 ATA
66 ATA
* * * *
64850666 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATATATCTGTTCTGGTGGCCTAGCC
1 TCTGGAAGCCTCACTGCAATATGGTGGCCTCGCCAC--A-ATATATCTGTTCTGGTGGCCTAGCC
64850731 ACAATA
63 ACAATA
64850737 TCTG
1 TCTG
64850741 TATCTGGTGA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 32 0.50
71 32 0.50
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (68 bp):
TCTGGAAGCCTCACTGCAATATGGTGGCCTCGCCACAATATATCTGTTCTGGTGGCCTAGCCACA
ATA
Found at i:64853643 original size:48 final size:48
Alignment explanation
Indices: 64853581--64854452 Score: 1690
Period size: 48 Copynumber: 18.1 Consensus size: 48
64853571 TATATATGTG
* *
64853581 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64853629 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64853677 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64853725 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64853773 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64853821 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64853869 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64853917 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64853965 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64854013 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64854061 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64854109 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64854157 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64854205 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64854253 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64854301 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
64854349 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
64854397 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGATGTATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA--TATGTATA
64854447 TTGTGG
1 -TGTGG
64854453 CCGAATGACC
Statistics
Matches: 818, Mismatches: 3, Indels: 3
0.99 0.00 0.00
Matches are distributed among these distances:
48 805 0.98
50 8 0.01
51 5 0.01
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:64854628 original size:37 final size:37
Alignment explanation
Indices: 64854578--64854680 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
64854568 GGAAATATAT
*
64854578 TCCGGTTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
64854615 TCCGGGTAAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
64854652 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
64854681 GGACTATTCA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:64855758 original size:27 final size:27
Alignment explanation
Indices: 64855728--64855877 Score: 140
Period size: 27 Copynumber: 5.6 Consensus size: 27
64855718 TATCTATAGC
* *
64855728 ATTACTAAAATACCCTTGGTTTACAAA
1 ATTACCAAAATACCCTTGGTTTATAAA
* * * *
64855755 ATTACCAAAATACTCATAGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTATAAA
*
64855782 ATTACCAAAATA-CCTTAGGTTTGTAAA
1 ATTACCAAAATACCCTT-GGTTTATAAA
* * *
64855809 ATTACCAAAATACCTTTGATTTATGAA
1 ATTACCAAAATACCCTTGGTTTATAAA
* * ** *
64855836 ATTACCGAAATACCCTCGACTTGTAAA
1 ATTACCAAAATACCCTTGGTTTATAAA
*
64855863 ATTACCAAAGTACCC
1 ATTACCAAAATACCC
64855878 CCAATTTATA
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 2 0.02
27 95 0.95
28 3 0.03
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
ATTACCAAAATACCCTTGGTTTATAAA
Found at i:64855908 original size:54 final size:54
Alignment explanation
Indices: 64855752--64855896 Score: 130
Period size: 54 Copynumber: 2.7 Consensus size: 54
64855742 CTTGGTTTAC
* ** * * * * * * **
64855752 AAAATTACCAAAATACTCATAGTTTGTAAAATTACCAAAATACCTTAGGTTTGT
1 AAAATTACCAAAATACCCCCAATTTATGAAATTACCGAAATACCCTCGACTTGT
****
64855806 AAAATTACCAAAATACCTTTGATTTATGAAATTACCGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCCCAATTTATGAAATTACCGAAATACCCTCGACTTGT
*
64855860 AAAATTACCAAAGTACCCCCAATTTAT-AGAATTACCG
1 AAAATTACCAAAATACCCCCAATTTATGA-AATTACCG
64855897 TTTTACCCTC
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
53 1 0.01
54 72 0.99
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCCAATTTATGAAATTACCGAAATACCCTCGACTTGT
Found at i:64855946 original size:27 final size:27
Alignment explanation
Indices: 64855923--64856057 Score: 182
Period size: 27 Copynumber: 5.0 Consensus size: 27
64855913 CAAAATTATT
* *
64855923 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
64855950 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
64855977 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
64856004 GAAATACCCCTGTAGGGTAGAATTGCC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
64856031 -AAGATACCCTTGTGGGGTAAAATTACC
1 GAA-ATACCCCTGTAGGGTAGAATTACC
64856058 ATTTTGCCCT
Statistics
Matches: 96, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 2 0.02
27 94 0.98
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:64855974 original size:54 final size:54
Alignment explanation
Indices: 64855923--64856053 Score: 203
Period size: 54 Copynumber: 2.4 Consensus size: 54
64855913 CAAAATTATT
* *
64855923 GAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
*
64855977 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTGCC
1 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
*
64856031 -AAGATACCCTTGTGGGGTA-AAAT
1 GAA-ATACCCTTGTAGGGTAGAAAT
64856054 TACCATTTTG
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
53 6 0.08
54 66 0.92
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (54 bp):
GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
Found at i:64856622 original size:22 final size:22
Alignment explanation
Indices: 64856570--64856634 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
64856560 GCCAATTATT
* *
64856570 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
64856592 CT-ACATATGACTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
64856614 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
64856635 ATGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:64856788 original size:216 final size:217
Alignment explanation
Indices: 64856406--64856802 Score: 541
Period size: 216 Copynumber: 1.8 Consensus size: 217
64856396 TGTTACCGAA
64856406 GGCTGTGTGACAAACGTATTTGCCTAAGGCTATGTGCCAATATATGATTATTGACGACTCTGTGT
1 GGCTGTGTGACAAACGTATTTGCCTAAGGCTATGTGCCAATATATGATTATTGACGACTCTGTGT
* * *
64856471 CGATCATATTTACTCAAGGCTGTGTGCCGACTATATTACCGTCGCTGATGGCTATGTGCCTAACA
66 AGATCATATTTACTCAAGGCTGTGTGCCGACTATATTACCGTAGCTGATGACTATGTGCCTAACA
* *
64856536 TGATACAGCTACCGATGGCTTAAAGCCAATTATTCTGATT-A-TGGCTTTGCGCCAACCTACATA
131 TAATACAGCTACCGATGGCTTAAAGCCAAGTATTCTG-TTAAGTGGCTTTGCGCCAACCTACATA
64856599 TGACTCTGTGCCAACCTGATTAT
195 TGACTCTGTGCCAACCTGATTAT
* * *
64856622 GGCTGTGTGCCAAATGTATTTGCCTAAGGCTATGTGCCAATATATGGTTATTGACGACTCTGTGT
1 GGCTGTGTGACAAACGTATTTGCCTAAGGCTATGTGCCAATATATGATTATTGACGACTCTGTGT
* ** * * *
64856687 AGATCATATTTAC-CTAGGGCTGTGTGCCGGTTATGTTACTC-TAGTTGATGACTATGTGCGTAA
66 AGATCATATTTACTC-AAGGCTGTGTGCCGACTATATTAC-CGTAGCTGATGACTATGTGCCTAA
* * * *** * *
64856750 CATAATGCAGTTATCGATGGCTTTGTGCGACGTATTCTGTTAAGTGGCTTTGC
129 CATAATACAGCTACCGATGGCTTAAAGCCAAGTATTCTGTTAAGTGGCTTTGC
64856803 CACATTACCT
Statistics
Matches: 155, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
215 3 0.02
216 142 0.92
217 10 0.06
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (217 bp):
GGCTGTGTGACAAACGTATTTGCCTAAGGCTATGTGCCAATATATGATTATTGACGACTCTGTGT
AGATCATATTTACTCAAGGCTGTGTGCCGACTATATTACCGTAGCTGATGACTATGTGCCTAACA
TAATACAGCTACCGATGGCTTAAAGCCAAGTATTCTGTTAAGTGGCTTTGCGCCAACCTACATAT
GACTCTGTGCCAACCTGATTAT
Found at i:64856823 original size:27 final size:26
Alignment explanation
Indices: 64856793--64856899 Score: 79
Period size: 27 Copynumber: 4.0 Consensus size: 26
64856783 ATTCTGTTAA
* *
64856793 GTGGCTTTGCCACATTACCTATTTCTG
1 GTGGCTATGCCACAATACCTA-TTCTG
* *
64856820 GTGGCTATGCCAAAAATATCTATTCTG
1 GTGGCTATGCC-ACAATACCTATTCTG
* * *
64856847 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATACCTAT-TCTG
* * * * *
64856874 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTATGCCACAATACCTATTCTG
64856900 ATAGCCATGC
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 13 0.19
27 49 0.71
28 7 0.10
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATACCTATTCTG
Found at i:64857075 original size:37 final size:37
Alignment explanation
Indices: 64857018--64857140 Score: 165
Period size: 37 Copynumber: 3.3 Consensus size: 37
64857008 TTGCATTCAC
* * * *
64857018 ATTCTGGTTCTGATTTTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGATTCTGTTACCTAATACTG
* * *
64857055 ATTTTGATTCTGGTTCTGATTTTGTTACCTAATACTG
1 ATTCTGATTCTGATTCTGATTCTGTTACCTAATACTG
* *
64857092 ATTCTGATTCTGATTCTGATTCTATTACCTGATACTG
1 ATTCTGATTCTGATTCTGATTCTGTTACCTAATACTG
64857129 ATTCTGATTCTG
1 ATTCTGATTCTG
64857141 TCACCTGATT
Statistics
Matches: 74, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (37 bp):
ATTCTGATTCTGATTCTGATTCTGTTACCTAATACTG
Found at i:64857100 original size:6 final size:6
Alignment explanation
Indices: 64857089--64857176 Score: 81
Period size: 6 Copynumber: 14.3 Consensus size: 6
64857079 TTACCTAATA
*
64857089 CTGATT CTGATT CTGATT CTGATT CT-ATT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * * *
64857138 CTG-TCAC CTGATT TTGATT CTGATT CTCATT TTGATT CT
1 CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGATT CT
64857177 AGTTCTGCTA
Statistics
Matches: 66, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 5 0.08
8 3 0.05
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.49
Consensus pattern (6 bp):
CTGATT
Found at i:64857123 original size:25 final size:25
Alignment explanation
Indices: 64857095--64857164 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
64857085 AATACTGATT
*
64857095 CTGATTCTGATTCTGATTCTATTAC
1 CTGATTCTGATTCTGATTCTATCAC
* *
64857120 CTGATACTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTATCAC
*
64857145 CTGATTTTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
64857165 CATTTTGATT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTATCAC
Found at i:64857124 original size:31 final size:30
Alignment explanation
Indices: 64857059--64857164 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 30
64857049 ATTCTGATTT
* *
64857059 TGATTCTGGTTCTGATTTTGTTACCTAATAC
1 TGATTCTGATTCTGATTCTGTTA-CTAATAC
*
64857090 TGATTCTGATTCTGATTCTGATT-CTATTACC
1 TGATTCTGATTCTGATTCTG-TTACTAATA-C
* * * **
64857121 TGATACTGATTCTGATTCTGTCACCTGATTT
1 TGATTCTGATTCTGATTCTGTTA-CTAATAC
64857152 TGATTCTGATTCT
1 TGATTCTGATTCT
64857165 CATTTTGATT
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
30 6 0.10
31 50 0.82
32 5 0.08
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (30 bp):
TGATTCTGATTCTGATTCTGTTACTAATAC
Found at i:64866651 original size:13 final size:14
Alignment explanation
Indices: 64866635--64866670 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
64866625 CAATCTCATA
64866635 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
64866648 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
64866661 TCTC-ATTTCA
1 TCTCAATTTCA
64866671 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:64866660 original size:18 final size:19
Alignment explanation
Indices: 64866622--64866662 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
64866612 TGGTTCATGT
64866622 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
64866641 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
64866659 TTTC
1 TTTC
64866663 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:64866855 original size:23 final size:21
Alignment explanation
Indices: 64866824--64866908 Score: 98
Period size: 21 Copynumber: 4.0 Consensus size: 21
64866814 CCTGATCAGT
*
64866824 ATACGACACATAAAGTGCCTG
1 ATACGACACACAAAGTGCCTG
* *
64866845 ATACGACACACGAGGTGCCTG
1 ATACGACACACAAAGTGCCTG
* *
64866866 ATACGACACACGAGGTGCCTG
1 ATACGACACACAAAGTGCCTG
*
64866887 AAATACGACACATAAAGTGCCT
1 --ATACGACACACAAAGTGCCT
64866909 AATCGATAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
21 39 0.70
23 17 0.30
ACGTcount: A:0.35, C:0.26, G:0.22, T:0.16
Consensus pattern (21 bp):
ATACGACACACAAAGTGCCTG
Found at i:64869146 original size:34 final size:33
Alignment explanation
Indices: 64869103--64869172 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 33
64869093 AGTGGTAATA
64869103 CAGTGTGGGCCTTAGCCC-ATTACAGTACCAGTAT
1 CAGTGTGGGCCTTAGCCCAATT-CAGTA-CAGTAT
*
64869137 CAGTGTGGGCCTTAGCCCAATTCAGTATAGTAT
1 CAGTGTGGGCCTTAGCCCAATTCAGTACAGTAT
64869170 CAG
1 CAG
64869173 AGATGCAAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
33 8 0.24
34 23 0.68
35 3 0.09
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (33 bp):
CAGTGTGGGCCTTAGCCCAATTCAGTACAGTAT
Found at i:64871004 original size:24 final size:24
Alignment explanation
Indices: 64870972--64871060 Score: 119
Period size: 24 Copynumber: 3.7 Consensus size: 24
64870962 TTACTCATTC
64870972 GCACACATAGTGCCGCGTTTCCTT
1 GCACACATAGTGCCGCGTTTCCTT
64870996 GCACACATAGTGCCGCGTTTCCTT
1 GCACACATAGTGCCGCGTTTCCTT
* *
64871020 GCGCACATAGTGCCATGTAGTTT--TT
1 GCACACATAGTGCC--G-CGTTTCCTT
64871045 GCACACATAGTGCCGC
1 GCACACATAGTGCCGC
64871061 ATAACCTCAC
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
23 1 0.02
24 37 0.64
25 15 0.26
26 1 0.02
27 4 0.07
ACGTcount: A:0.19, C:0.30, G:0.22, T:0.28
Consensus pattern (24 bp):
GCACACATAGTGCCGCGTTTCCTT
Found at i:64882654 original size:50 final size:50
Alignment explanation
Indices: 64882517--64882683 Score: 203
Period size: 50 Copynumber: 3.4 Consensus size: 50
64882507 CACGCGATCA
* * * *
64882517 ATCTTGTATATTTGGCTATAAAGGTATGCACAAATGTGATATTATATTTG
1 ATCTTGTATATTCGGCCATATAGGTATGCACATATGTGATATTATATTTG
* * *
64882567 AAT-TTGTATA-TCGGCCATATAAGTAAGCACATATGTGATGTTATATTTG
1 -ATCTTGTATATTCGGCCATATAGGTATGCACATATGTGATATTATATTTG
* * * *
64882616 ATCTTGCATATTTGGCCACATAGGTATGCATATATGTGATATTATATTTG
1 ATCTTGTATATTCGGCCATATAGGTATGCACATATGTGATATTATATTTG
*
64882666 ATTTTGTATATTCGGCCA
1 ATCTTGTATATTCGGCCA
64882684 AATGAGTGAT
Statistics
Matches: 97, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
48 2 0.02
49 38 0.39
50 55 0.57
51 2 0.02
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41
Consensus pattern (50 bp):
ATCTTGTATATTCGGCCATATAGGTATGCACATATGTGATATTATATTTG
Found at i:64896113 original size:50 final size:50
Alignment explanation
Indices: 64896049--64896303 Score: 269
Period size: 50 Copynumber: 5.1 Consensus size: 50
64896039 TTGAATTTTT
* * * *
64896049 GGCCACATACGTATGTACATATATGATGTTATATTGGATCTTGAATATTC
1 GGCCACATAGGTATGCACATATGTGATGTTATATTGGATCTTGTATATTC
* *
64896099 GGCCACATAGGTATGTACATATGTGATGTTATATTGGATCTTGTATATTT
1 GGCCACATAGGTATGCACATATGTGATGTTATATTGGATCTTGTATATTC
* * * * * * * *
64896149 GGCTATAAAGGTATGCAAAAATATGATATTATATTTGAAT-TTGTATATTC
1 GGCCACATAGGTATGCACATATGTGATGTTATA-TTGGATCTTGTATATTC
** * * * * * *
64896199 ATCCATATAAGTAAGCACATATGTGATGTTATATTTGATCTTGCATATTT
1 GGCCACATAGGTATGCACATATGTGATGTTATATTGGATCTTGTATATTC
* * *
64896249 GGCCACATAGGTATGCATATATGTGATATTATATTTGATCTTGTATATTC
1 GGCCACATAGGTATGCACATATGTGATGTTATATTGGATCTTGTATATTC
64896299 GGCCA
1 GGCCA
64896304 AATGAGTGAT
Statistics
Matches: 166, Mismatches: 37, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
49 4 0.02
50 157 0.95
51 5 0.03
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (50 bp):
GGCCACATAGGTATGCACATATGTGATGTTATATTGGATCTTGTATATTC
Found at i:64904148 original size:50 final size:50
Alignment explanation
Indices: 64904084--64904322 Score: 345
Period size: 50 Copynumber: 4.8 Consensus size: 50
64904074 TGAGTACACG
64904084 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCGCA
* * ** ** * *
64904134 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-ATAACTTCGATCGCG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGAT-GGTGAGGTCGCA
* *
64904185 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCGCA
64904235 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCGCA
* *
64904285 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
64904323 AGCTTCGGCT
Statistics
Matches: 166, Mismatches: 20, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
50 125 0.75
51 41 0.25
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCGCA
Found at i:64904257 original size:101 final size:100
Alignment explanation
Indices: 64904082--64904322 Score: 349
Period size: 101 Copynumber: 2.4 Consensus size: 100
64904072 TGTGAGTACA
*
64904082 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCGCATGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACATGTGTAGTACTAA
* **
64904147 GTGCAGGCTACTATGCGTACTCA-ATAACTTCGATCG
66 GTGCAGGCTACTACGCGTA-TCAGAT-ACTGAGATCG
*
64904183 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACATGTGTAGTACTAA
* ** *
64904248 GTGCAGGCTACTACGTGTATCAGATGGTGAGGTCG
66 GTGCAGGCTACTACGCGTATCAGATACTGAGATCG
* * *
64904283 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
64904323 AGCTTCGGCT
Statistics
Matches: 127, Mismatches: 12, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
100 45 0.35
101 82 0.65
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (100 bp):
CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACATGTGTAGTACTAA
GTGCAGGCTACTACGCGTATCAGATACTGAGATCG
Found at i:64908761 original size:39 final size:39
Alignment explanation
Indices: 64908718--64908844 Score: 173
Period size: 39 Copynumber: 3.2 Consensus size: 39
64908708 TTCCAGCGGG
* * * *
64908718 TAGCCTGCAGACCTTAAGTCCGGTTATAATTCTAGCACA
1 TAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCATA
*
64908757 TAGCCTGCGGACCTTAAGTCCGGGTATAATTCCAGCATA
1 TAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCATA
* * *
64908796 TAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCATA
1 TAGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCATA
64908836 TAGCCTGCG
1 TAGCCTGCG
64908845 AGTCTTTAGG
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 44 0.56
40 35 0.44
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
TAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCATA
Found at i:64908825 original size:40 final size:40
Alignment explanation
Indices: 64908731--64908862 Score: 167
Period size: 40 Copynumber: 3.3 Consensus size: 40
64908721 CCTGCAGACC
* * * * * *
64908731 TTAAGTCCGGTTATAATTCTAGCACATAGCCTGC-GGACC
1 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
* *
64908770 TTAAGTCCGGGTATAATTCCAGCATATAGCCTGCGGGTCT
1 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
*
64908810 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGAGTCT
1 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
*
64908850 TTAGGCCCGGATA
1 TTAAGCCCGGATA
64908863 CACATCAACT
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 31 0.37
40 52 0.63
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (40 bp):
TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
Found at i:64917094 original size:30 final size:30
Alignment explanation
Indices: 64917060--64917119 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
64917050 ATTTAATACG
64917060 AACTTTGGAAAAATTACACTTTTACCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
* * * *
64917090 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
64917120 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTACCCCTA
Found at i:64921958 original size:46 final size:46
Alignment explanation
Indices: 64921891--64922019 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
64921881 TGTAACCCGC
* * * *
64921891 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
64921937 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
64921983 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
64922020 TGCCCAAACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:64924666 original size:20 final size:20
Alignment explanation
Indices: 64924629--64924667 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
64924619 ATGTAGCATA
* *
64924629 AATGTTATTTTTAAGTTATT
1 AATGTTAATTATAAGTTATT
*
64924649 AATGTTAATTATATGTTAT
1 AATGTTAATTATAAGTTAT
64924668 GCTGATTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.56
Consensus pattern (20 bp):
AATGTTAATTATAAGTTATT
Found at i:64924930 original size:46 final size:46
Alignment explanation
Indices: 64924877--64925141 Score: 247
Period size: 46 Copynumber: 5.7 Consensus size: 46
64924867 TGGTTGAGCA
*
64924877 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
64924923 TCTGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
64924970 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
64925016 TCTGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
64925063 TCCAAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
64925109 -CCCAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
64925142 GGGGCGGGTT
Statistics
Matches: 174, Mismatches: 31, Indels: 29
0.74 0.13 0.12
Matches are distributed among these distances:
43 12 0.07
45 36 0.21
46 56 0.32
47 53 0.30
48 6 0.03
50 11 0.06
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:64924991 original size:47 final size:47
Alignment explanation
Indices: 64924926--64925084 Score: 191
Period size: 47 Copynumber: 3.4 Consensus size: 47
64924916 GCAAATGTCT
64924926 GAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCGTCC
1 GAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCGTCC
* * * * * *
64924973 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--TGTCT
1 GAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGGCGTCC
*
64925019 GAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCGTCC
*
64925066 AAACTCGTTGAGTTGAGTC
1 GAACTCGTTGAGTTGAGTC
64925085 TGAGTTCACT
Statistics
Matches: 91, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.07
45 3 0.03
46 28 0.31
47 45 0.49
48 3 0.03
50 6 0.07
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTAGGCGTCC
Found at i:64925011 original size:93 final size:93
Alignment explanation
Indices: 64924874--64925136 Score: 438
Period size: 93 Copynumber: 2.8 Consensus size: 93
64924864 GGATGGTTGA
64924874 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
64924939 TGAGTCCAAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
*
64924967 GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
64925032 TGAGTCCAAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
* * * * ** *
64925060 GCATCCAAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCCAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
*
64925124 TGAGTCCGAGTTC
66 TGAGTCCAAGTTC
64925137 ACTTAGGGGC
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
92 24 0.15
93 136 0.85
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:64928035 original size:188 final size:188
Alignment explanation
Indices: 64927724--64928156 Score: 729
Period size: 188 Copynumber: 2.3 Consensus size: 188
64927714 ACTATAACCG
* * *
64927724 TATATGCTAATT-GAATTAAGTAAATTGCCTTATTATAATGA---ATCA---ACA-TATGTGTGC
1 TATATGCT-ATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
64927781 GGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATTGCCATATTA
65 GGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATTGCCATATTA
64927846 TAATGAGTCAACATGGGCACTATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTT
130 TAATGAGTCAACATGGGCACTATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTT
*
64927905 TATATGCTATTCGAAGTAAGTTAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
64927970 GAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATTGCCTTATTAT
66 GAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATTGCCATATTAT
* * *
64928035 AATTAGTTAACATTGGCACTATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTT
131 AATGAGTCAACATGGGCACTATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTT
64928093 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
1 TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
64928157 AGATTTGAAT
Statistics
Matches: 235, Mismatches: 9, Indels: 9
0.93 0.04 0.04
Matches are distributed among these distances:
180 3 0.01
181 35 0.15
184 3 0.01
187 2 0.01
188 192 0.82
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (188 bp):
TATATGCTATTCGAAGTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATTGCCATATTAT
AATGAGTCAACATGGGCACTATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:64928169 original size:94 final size:94
Alignment explanation
Indices: 64927772--64928156 Score: 725
Period size: 94 Copynumber: 4.1 Consensus size: 94
64927762 TGAATCAACA
64927772 TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATT
1 TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATT
* * *
64927837 GCCATATTATAATGAGTCAACATGGGCAC
66 GCCTTATTATAATGAGTTAACATTGGCAC
64927866 TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATT
1 TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATT
64927931 GCCTTATTATAATGAGTTAACATTGGCAC
66 GCCTTATTATAATGAGTTAACATTGGCAC
64927960 TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATT
1 TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATT
*
64928025 GCCTTATTATAATTAGTTAACATTGGCAC
66 GCCTTATTATAATGAGTTAACATTGGCAC
*
64928054 TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTAAATT
1 TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATT
64928119 GCCTTATTATAATGAGTTAACATTGGCAC
66 GCCTTATTATAATGAGTTAACATTGGCAC
64928148 TATGTGTGC
1 TATGTGTGC
64928157 AGATTTGAAT
Statistics
Matches: 285, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 285 1.00
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.39
Consensus pattern (94 bp):
TATGTGTGCGGAATTAAATGTCACTTTGTGTGCAGATTTTATATGCTATTCGAAGTAAGTTAATT
GCCTTATTATAATGAGTTAACATTGGCAC
Found at i:64928223 original size:24 final size:24
Alignment explanation
Indices: 64928191--64928254 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
64928181 GAAAATTTCA
* *
64928191 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
64928215 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
64928239 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
64928255 ATTCGGGTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:64933314 original size:13 final size:13
Alignment explanation
Indices: 64933296--64933323 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
64933286 TATCCCATGT
64933296 CTGTGCCACAAGA
1 CTGTGCCACAAGA
64933309 CTGTGCCACAAGA
1 CTGTGCCACAAGA
64933322 CT
1 CT
64933324 TTCACTAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.32, G:0.21, T:0.18
Consensus pattern (13 bp):
CTGTGCCACAAGA
Found at i:64946132 original size:50 final size:50
Alignment explanation
Indices: 64946057--64946282 Score: 262
Period size: 50 Copynumber: 4.5 Consensus size: 50
64946047 TGAATACACG
* *
64946057 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
* * ** *
64946107 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGTCACA
* * * *
64946158 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGTCACA
* * *
64946208 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
64946257 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
64946283 TGCGTATCAG
Statistics
Matches: 152, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 33 0.22
50 75 0.49
51 35 0.23
52 3 0.02
53 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
Found at i:64946228 original size:101 final size:98
Alignment explanation
Indices: 64946053--64946294 Score: 299
Period size: 101 Copynumber: 2.4 Consensus size: 98
64946043 ATTGTGAATA
* * * *
64946053 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGTGAAGTCACATGTGTAGTACT
*
64946118 AAGTGCAGGCTACTATGCGTACTCA-A-TGACTTCGAT
65 AAGTGCAGGCTACTACGCGTAC-CAGATTG--TT-GAT
* *
64946154 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GTGAAGTCACATGTGTAGTACT
* *
64946219 AAGTGCAGGCTACTACGTGTACCAGATTGTTGGT
65 AAGTGCAGGCTACTACGCGTACCAGATTGTTGAT
* * * *
64946253 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
64946295 AGCTTCGGCT
Statistics
Matches: 125, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
99 40 0.32
100 5 0.04
101 78 0.62
102 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (98 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGTGAAGTCACATGTGTAGTACTA
AGTGCAGGCTACTACGCGTACCAGATTGTTGAT
Found at i:64949743 original size:43 final size:45
Alignment explanation
Indices: 64949696--64949791 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 45
64949686 CGATGCCGAT
* *
64949696 GTCTCAGACATGGTCTTACTTG-TAAC-CACATATCAATGCCAAC
1 GTCTCAGACATGGTCTTACATGAAAACACACATATCAATGCCAAC
* *
64949739 GTCTCAGACGTGGTCTTACATGAAAACACATATATCAATGCCAAC
1 GTCTCAGACATGGTCTTACATGAAAACACACATATCAATGCCAAC
*
64949784 GTCCCAGA
1 GTCTCAGA
64949792 TGTGTTCTTC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 20 0.43
44 3 0.07
45 23 0.50
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (45 bp):
GTCTCAGACATGGTCTTACATGAAAACACACATATCAATGCCAAC
Found at i:64949809 original size:45 final size:45
Alignment explanation
Indices: 64949725--64949816 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 45
64949715 TTGTAACCAC
* *
64949725 ATATCAATGCCAACGTCTCAGACGTGGTCTTACATGAAAACACAT
1 ATATCAATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAT
* * *
64949770 ATATCAATGCCAACGTCCCAGATGTGTTCTTCCACGAAAACACAT
1 ATATCAATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAT
64949815 AT
1 AT
64949817 CGGAATCCTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (45 bp):
ATATCAATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAT
Found at i:64950319 original size:29 final size:30
Alignment explanation
Indices: 64950286--64950345 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 30
64950276 GTGTTCATAC
64950286 AAGT-CCATAATTTCA-T-TTTTTTCACATTT
1 AAGTCCCATAATTT-ATTATTTTTTCA-ATTT
*
64950315 AAGTCCCTTAATTTATTATTTTTTCAATTT
1 AAGTCCCATAATTTATTATTTTTTCAATTT
64950345 A
1 A
64950346 CTCATAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
29 5 0.19
30 14 0.52
31 8 0.30
ACGTcount: A:0.28, C:0.15, G:0.03, T:0.53
Consensus pattern (30 bp):
AAGTCCCATAATTTATTATTTTTTCAATTT
Found at i:64950991 original size:23 final size:23
Alignment explanation
Indices: 64950964--64951012 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
64950954 AATTTTACCC
64950964 ATGCATGAGTTGCTTTTATTTTG
1 ATGCATGAGTTGCTTTTATTTTG
64950987 ATGCATGAGTTGCTTTTATTTTG
1 ATGCATGAGTTGCTTTTATTTTG
64951010 ATG
1 ATG
64951013 GATTATGGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.18, C:0.08, G:0.22, T:0.51
Consensus pattern (23 bp):
ATGCATGAGTTGCTTTTATTTTG
Found at i:64958774 original size:49 final size:49
Alignment explanation
Indices: 64958652--64958837 Score: 180
Period size: 50 Copynumber: 3.8 Consensus size: 49
64958642 GTAAATACAC
* * * * * * *
64958652 GTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACGGTTA-AGTCGCA
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGATGAGA-TCACA
* **
64958701 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACTCA-ATGACTTCGATCAC-
1 -GTGTAGTACTAAGTGCAGGCTACTATGTGTA-TCAGATGA-TGAGATCACA
* * *
64958751 GTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGATGAGGTCACA
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGATGAGATCACA
*
64958800 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 -GTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT
64958838 AGCTTCGGCT
Statistics
Matches: 116, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
48 8 0.07
49 33 0.28
50 66 0.57
51 8 0.07
52 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (49 bp):
GTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGATGAGATCACA
Found at i:64958821 original size:99 final size:99
Alignment explanation
Indices: 64958649--64958827 Score: 277
Period size: 99 Copynumber: 1.8 Consensus size: 99
64958639 ATTGTAAATA
* * * * *
64958649 CACGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACGGTTAAGTCGCATGTGTAGTACTAA
1 CACGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACGATGAAGTCACATGTGTAGTACTAA
*
64958714 GTGTAGGCTACTATGTGTACTCAATGACTTCGAT
66 GTGCAGGCTACTATGTGTACTCAATGACTTCGAT
* * *
64958748 CACGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGATGAGGTCACATGTGTAGTACTAA
1 CACGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACGATGAAGTCACATGTGTAGTACTAA
64958813 GTGCAGGCTACTATG
66 GTGCAGGCTACTATG
64958828 CGTATCAGAT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
99 71 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (99 bp):
CACGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACGATGAAGTCACATGTGTAGTACTAA
GTGCAGGCTACTATGTGTACTCAATGACTTCGAT
Found at i:64962392 original size:31 final size:31
Alignment explanation
Indices: 64962354--64962413 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
64962344 ATGGGAAATA
64962354 ACCTATCATGCATGAAACCAATGATATGATG
1 ACCTATCATGCATGAAACCAATGATATGATG
64962385 ACCTATCATGCATGAAACCAATGATATGA
1 ACCTATCATGCATGAAACCAATGATATGA
64962414 GGTTTTCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (31 bp):
ACCTATCATGCATGAAACCAATGATATGATG
Found at i:64962399 original size:17 final size:16
Alignment explanation
Indices: 64962353--64962403 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
64962343 AATGGGAAAT
64962353 AACCTATCATGCATGA
1 AACCTATCATGCATGA
* *
64962369 AACCAATGAT--ATGA
1 AACCTATCATGCATGA
*
64962383 TGACCTATCATGCATGA
1 -AACCTATCATGCATGA
64962400 AACC
1 AACC
64962404 AATGATATGA
Statistics
Matches: 26, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
14 4 0.15
15 7 0.27
16 11 0.42
17 4 0.15
ACGTcount: A:0.39, C:0.24, G:0.14, T:0.24
Consensus pattern (16 bp):
AACCTATCATGCATGA
Found at i:64963076 original size:15 final size:14
Alignment explanation
Indices: 64963052--64963081 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
64963042 GGGTGAGGGG
64963052 TGTTACCCAAAACA
1 TGTTACCCAAAACA
64963066 TGTTAACCCAAAACA
1 TGTT-ACCCAAAACA
64963081 T
1 T
64963082 ATCTTTCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.43, C:0.27, G:0.07, T:0.23
Consensus pattern (14 bp):
TGTTACCCAAAACA
Found at i:64963142 original size:24 final size:25
Alignment explanation
Indices: 64963109--64963155 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
64963099 AACTAGCATC
*
64963109 ACATAGCTC-AAATATTCATCAATG
1 ACATAACTCAAAATATTCATCAATG
64963133 ACATAACTCAAAATATTCATCAA
1 ACATAACTCAAAATATTCATCAA
64963156 AATAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.47, C:0.21, G:0.04, T:0.28
Consensus pattern (25 bp):
ACATAACTCAAAATATTCATCAATG
Found at i:64963378 original size:25 final size:26
Alignment explanation
Indices: 64963350--64963404 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
64963340 TTAATTTATG
64963350 TTATATT-ATAACATATATTAA-CATA
1 TTATATTAATAACATAT-TTAACCATA
* *
64963375 TTAT-TTAATTACATATTTAACCTTA
1 TTATATTAATAACATATTTAACCATA
64963400 TTATA
1 TTATA
64963405 AAATATGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (26 bp):
TTATATTAATAACATATTTAACCATA
Found at i:64966569 original size:29 final size:29
Alignment explanation
Indices: 64966506--64966573 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
64966496 TAATCAACCG
64966506 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
64966535 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
64966564 CGCACACTTA
1 CGCACACTTA
64966574 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:64966685 original size:174 final size:174
Alignment explanation
Indices: 64966395--64966722 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
64966385 AACTCAAGGT
*
64966395 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
64966460 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
64966525 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
64966569 ACTTACCTTTTCCGCTGTCCAAAATTGACTTGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
64966634 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
64966699 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
64966723 TGTACAATTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:64966714 original size:29 final size:30
Alignment explanation
Indices: 64966675--64966753 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
64966665 CTTAATAATC
64966675 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
64966705 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
64966734 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
64966754 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:64971858 original size:55 final size:55
Alignment explanation
Indices: 64971798--64971907 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
64971788 TAAAAGTGTA
*
64971798 AATCTATGGGTTTTATTGTGAATTGTTGGTAATAATGGATTGTTTCTAGGTCCTT
1 AATCTATGGGTTTTATTGTGAATTGTTGGTAATAATGGATTGTTTCAAGGTCCTT
64971853 AATCTATGGGTTTTATTGTGAATTGTTGGTAATAATGGATTGTTTCAAGGTCCTT
1 AATCTATGGGTTTTATTGTGAATTGTTGGTAATAATGGATTGTTTCAAGGTCCTT
64971908 TATAACATTG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.23, C:0.07, G:0.24, T:0.46
Consensus pattern (55 bp):
AATCTATGGGTTTTATTGTGAATTGTTGGTAATAATGGATTGTTTCAAGGTCCTT
Found at i:64975594 original size:20 final size:20
Alignment explanation
Indices: 64975557--64975596 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
64975547 ATCTCAAACC
64975557 ACATAGTTCATATACATTTA
1 ACATAGTTCATATACATTTA
* * *
64975577 ACATATTTCCTATTCATTTA
1 ACATAGTTCATATACATTTA
64975597 CACTATAAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.17, G:0.03, T:0.45
Consensus pattern (20 bp):
ACATAGTTCATATACATTTA
Found at i:64975721 original size:36 final size:36
Alignment explanation
Indices: 64975681--64975752 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
64975671 ATAGTATACA
*
64975681 TTTCGGACGTACTTGAATCGGATATACATCACATAT
1 TTTCGAACGTACTTGAATCGGATATACATCACATAT
64975717 TTTCGAACGTACTTGAATCGGATATACATCACATAT
1 TTTCGAACGTACTTGAATCGGATATACATCACATAT
64975753 AATCATTCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.33
Consensus pattern (36 bp):
TTTCGAACGTACTTGAATCGGATATACATCACATAT
Found at i:64987567 original size:43 final size:43
Alignment explanation
Indices: 64987504--64987644 Score: 135
Period size: 44 Copynumber: 3.3 Consensus size: 43
64987494 TCCTAGATGT
* * * *
64987504 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAATAA
1 GGTCTTACACGAAATAAAATATCGATGCCACTGTCCCAAACAA
*
64987547 GGTCTTACACGAAATAAAATA-CGATGCCAAC-GTCCCAAACAT
1 GGTCTTACACGAAATAAAATATCGATGCC-ACTGTCCCAAACAA
* * * * **
64987589 GGTCTTACACGTAAATCATAA-GTCGATGCCAATGTCCCAGACGT
1 GGTCTTACACG-AAAT-AAAATATCGATGCCACTGTCCCAAACAA
64987633 GGTCTTACACGA
1 GGTCTTACACGA
64987645 TAACACATAT
Statistics
Matches: 83, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
42 27 0.33
43 26 0.31
44 30 0.36
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
GGTCTTACACGAAATAAAATATCGATGCCACTGTCCCAAACAA
Found at i:64987627 original size:44 final size:43
Alignment explanation
Indices: 64987503--64987643 Score: 162
Period size: 42 Copynumber: 3.3 Consensus size: 43
64987493 GTCCTAGATG
* * *
64987503 TGGTCTTACATGT-AATCAAATATCGATGCCACTGTCCCAAATA
1 TGGTCTTACACGTAAATCAAA-ATCGATGCCAATGTCCCAAACA
* *
64987546 AGGTCTTACACG-AAAT-AAAATACGATGCCAACGTCCCAAACA
1 TGGTCTTACACGTAAATCAAAAT-CGATGCCAATGTCCCAAACA
* * *
64987588 TGGTCTTACACGTAAATCATAAGTCGATGCCAATGTCCCAGACG
1 TGGTCTTACACGTAAATCA-AAATCGATGCCAATGTCCCAAACA
64987632 TGGTCTTACACG
1 TGGTCTTACACG
64987644 ATAACACATA
Statistics
Matches: 83, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
41 2 0.02
42 31 0.37
43 17 0.20
44 30 0.36
45 3 0.04
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
TGGTCTTACACGTAAATCAAAATCGATGCCAATGTCCCAAACA
Found at i:64990820 original size:29 final size:29
Alignment explanation
Indices: 64990786--64991030 Score: 142
Period size: 29 Copynumber: 8.4 Consensus size: 29
64990776 ATTGGTGATC
64990786 ATCGAATATGAAAAGGGATGGTGACGACT
1 ATCGAATATGAAAAGGGATGGTGACGACT
* * *
64990815 ATCGAATATGAAAAGGGATAGCT-TCGGCT
1 ATCGAATATGAAAAGGGAT-GGTGACGACT
* * * *
64990844 TTCGATTATGAAAAGGGATGGTGACGCCC
1 ATCGAATATGAAAAGGGATGGTGACGACT
* * *
64990873 ATCGAATATGAGAAGGGATAGCT-TC-ATCT
1 ATCGAATATGAAAAGGGAT-GGTGACGA-CT
* * ** *
64990902 ATC-AGATATGAAAAGAGATAGCT-TTGGCT
1 ATCGA-ATATGAAAAGGGAT-GGTGACGACT
* * * * *
64990931 ATTGATTATGAAAAGTGATGGTGACAACC
1 ATCGAATATGAAAAGGGATGGTGACGACT
*
64990960 ATC-AACAATGAAAAGGGATGGTGACGACT
1 ATCGAA-TATGAAAAGGGATGGTGACGACT
* * ** * *
64990989 ATCGATTAATGAAAAGAGATGGTTTCAACC
1 ATCGAAT-ATGAAAAGGGATGGTGACGACT
64991019 ATCGAATATGAA
1 ATCGAATATGAA
64991031 CATGGACAGT
Statistics
Matches: 162, Mismatches: 43, Indels: 22
0.71 0.19 0.10
Matches are distributed among these distances:
28 6 0.04
29 127 0.78
30 29 0.18
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (29 bp):
ATCGAATATGAAAAGGGATGGTGACGACT
Found at i:64990882 original size:58 final size:58
Alignment explanation
Indices: 64990787--64990897 Score: 186
Period size: 58 Copynumber: 1.9 Consensus size: 58
64990777 TTGGTGATCA
*
64990787 TCGAATATGAAAAGGGATGGTGACGACTATCGAATATGAAAAGGGATAGCTTCGGCTT
1 TCGAATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATAGCTTCGGCTT
* * *
64990845 TCGATTATGAAAAGGGATGGTGACGCCCATCGAATATGAGAAGGGATAGCTTC
1 TCGAATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATAGCTTC
64990898 ATCTATCAGA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 49 1.00
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (58 bp):
TCGAATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATAGCTTCGGCTT
Found at i:64990912 original size:58 final size:57
Alignment explanation
Indices: 64990786--64990916 Score: 181
Period size: 58 Copynumber: 2.2 Consensus size: 57
64990776 ATTGGTGATC
* *
64990786 ATCGAATATGAAAAGGGATGGTGACGACTATCGAATATGAAAAGGGATAGCTTCGGCT
1 ATCG-ATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATAGCTTCAGCT
* * * *
64990844 TTCGATTATGAAAAGGGATGGTGACGCCCATCGAATATGAGAAGGGATAGCTTCATCT
1 ATCGA-TATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATAGCTTCAGCT
64990902 ATCAGATATGAAAAG
1 ATC-GATATGAAAAG
64990917 AGATAGCTTT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
57 1 0.02
58 61 0.95
59 2 0.03
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.24
Consensus pattern (57 bp):
ATCGATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATAGCTTCAGCT
Found at i:64990991 original size:87 final size:86
Alignment explanation
Indices: 64990785--64991008 Score: 258
Period size: 87 Copynumber: 2.6 Consensus size: 86
64990775 TATTGGTGAT
* *
64990785 CATCGAATATGAAAAGGGATGGTGACGACTATCGAATATGAAAAGGGATAGCTTCGGCTTTCGAT
1 CATCGAAAATGAAAAGGGATGGTGACGACTATCG-ATATGAAAAGAGATAGCTTCGGCTTTCGAT
**
64990850 TATGAAAAGGGATGGTGACGCC
65 TATGAAAAGGGATGGTGACAAC
* * * * *
64990872 CATCGAATATGAGAAGGGATAGCT-TC-ATCTATCAGATATGAAAAGAGATAGCTTTGGCTATT-
1 CATCGAAAATGAAAAGGGAT-GGTGACGA-CTATC-GATATGAAAAGAGATAGCTTCGGCT-TTC
*
64990934 GATTATGAAAAGTGATGGTGACAAC
62 GATTATGAAAAGGGATGGTGACAAC
64990959 CATC-AACAATGAAAAGGGATGGTGACGACTATCGATTAATGAAAAGAGAT
1 CATCGAA-AATGAAAAGGGATGGTGACGACTATCGA-T-ATGAAAAGAGAT
64991009 GGTTTCAACC
Statistics
Matches: 116, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
86 7 0.06
87 91 0.78
88 18 0.16
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.24
Consensus pattern (86 bp):
CATCGAAAATGAAAAGGGATGGTGACGACTATCGATATGAAAAGAGATAGCTTCGGCTTTCGATT
ATGAAAAGGGATGGTGACAAC
Found at i:64991023 original size:30 final size:30
Alignment explanation
Indices: 64990934--64991023 Score: 94
Period size: 30 Copynumber: 3.1 Consensus size: 30
64990924 TTTGGCTATT
*
64990934 GATT-ATGAAAAGTGATGGTGACAACCATC
1 GATTAATGAAAAGAGATGGTGACAACCATC
** * * *
64990963 -AACAATGAAAAGGGATGGTGACGACTATC
1 GATTAATGAAAAGAGATGGTGACAACCATC
**
64990992 GATTAATGAAAAGAGATGGTTTCAACCATC
1 GATTAATGAAAAGAGATGGTGACAACCATC
64991022 GA
1 GA
64991024 ATATGAACAT
Statistics
Matches: 47, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
28 1 0.02
29 22 0.47
30 24 0.51
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.22
Consensus pattern (30 bp):
GATTAATGAAAAGAGATGGTGACAACCATC
Found at i:64992146 original size:47 final size:47
Alignment explanation
Indices: 64992068--64992564 Score: 922
Period size: 47 Copynumber: 10.6 Consensus size: 47
64992058 CCCTTCGGGA
* * * * * *
64992068 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64992115 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64992162 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64992209 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64992256 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64992303 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64992350 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64992397 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64992444 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64992491 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64992538 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
64992565 TATTCAAATA
Statistics
Matches: 440, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 440 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64996525 original size:40 final size:40
Alignment explanation
Indices: 64996319--64996579 Score: 269
Period size: 40 Copynumber: 6.5 Consensus size: 40
64996309 AGCATGATTA
* * * *
64996319 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * *
64996359 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
64996399 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
64996439 CTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** * * *
64996479 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* ** *
64996520 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAATG
64996560 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
64996580 CATCATTCGA
Statistics
Matches: 187, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.02
40 164 0.88
41 20 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:64996525 original size:120 final size:121
Alignment explanation
Indices: 64996304--64996579 Score: 308
Period size: 120 Copynumber: 2.3 Consensus size: 121
64996294 CGAATACACG
* * * * * * *
64996304 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGA
* * *
64996369 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA-CA
66 CTTAGCACGGATATATAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGATATCA
* * *
64996424 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGA
* * * * * **
64996489 CTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTAGTCCGGATATGG
66 CTTAGCACGGATATA-TAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGATATCA
* *
64996545 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGA
64996580 CATCATTCGA
Statistics
Matches: 131, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
120 105 0.80
121 21 0.16
122 5 0.04
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (121 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGA
CTTAGCACGGATATATAACTAGCACCAATGCTCTTCGGAACTTAGCCCGGATATCA
Found at i:64996926 original size:29 final size:29
Alignment explanation
Indices: 64996887--64996965 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
64996877 CTTAATAATC
*
64996887 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
64996917 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
64996946 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
64996966 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:64997008 original size:43 final size:43
Alignment explanation
Indices: 64996947--64997049 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
64996937 TGCATTTCAA
64996947 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
64996990 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
64997033 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
64997050 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:64999028 original size:37 final size:37
Alignment explanation
Indices: 64998969--64999077 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
64998959 AGCTCAGACG
* *
64998969 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
64999006 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
64999043 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
64999078 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:64999344 original size:47 final size:47
Alignment explanation
Indices: 64999286--65000651 Score: 2516
Period size: 47 Copynumber: 29.1 Consensus size: 47
64999276 ACACGTTTCG
* * *
64999286 CATTAGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
64999333 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
64999380 CATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
64999427 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
64999474 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
64999521 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
64999568 CATTGGCCATTCGGCCTTATCACACATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
64999615 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
64999662 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
64999709 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
64999756 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
64999803 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
64999850 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
64999897 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
64999944 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
64999991 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
65000038 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
65000085 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
65000132 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
65000179 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
65000226 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
65000273 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
65000320 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
65000367 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
65000414 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
65000461 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
65000508 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
65000555 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * * **
65000602 CATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
65000649 CAT
1 CAT
65000652 AAAATCCTAA
Statistics
Matches: 1287, Mismatches: 32, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 1287 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:64999450 original size:22 final size:22
Alignment explanation
Indices: 64999423--64999544 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
64999413 GTTCACATTC
64999423 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
64999445 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
64999469 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
64999492 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
64999516 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
64999539 ATCACA
1 ATCACA
64999545 CATACGCATG
Statistics
Matches: 74, Mismatches: 10, Indels: 32
0.64 0.09 0.28
Matches are distributed among these distances:
22 22 0.30
23 18 0.24
24 18 0.24
25 16 0.22
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:65014197 original size:32 final size:32
Alignment explanation
Indices: 65014156--65014219 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
65014146 ATGTGAGTAA
65014156 ATGTATGTGTGAAAGTTTCAAGCATTAATTTG
1 ATGTATGTGTGAAAGTTTCAAGCATTAATTTG
65014188 ATGTATGTGTGAAAGTTTCAAGCATTAATTTG
1 ATGTATGTGTGAAAGTTTCAAGCATTAATTTG
65014220 GTCATTTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.06, G:0.22, T:0.41
Consensus pattern (32 bp):
ATGTATGTGTGAAAGTTTCAAGCATTAATTTG
Found at i:65015804 original size:24 final size:24
Alignment explanation
Indices: 65015772--65015830 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
65015762 CAATCCAATG
* * *
65015772 ACTATGTGTGCG-GTTTACTATGGC
1 ACTATGTGTGCGAGTGTAATA-AGC
65015796 ACTATGTGTGCGAGTGTAATAAGC
1 ACTATGTGTGCGAGTGTAATAAGC
65015820 ACTATGTGTGC
1 ACTATGTGTGC
65015831 AAATTCGGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 25 0.81
25 6 0.19
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (24 bp):
ACTATGTGTGCGAGTGTAATAAGC
Found at i:65022064 original size:174 final size:174
Alignment explanation
Indices: 65021774--65022120 Score: 685
Period size: 174 Copynumber: 2.0 Consensus size: 174
65021764 GATGTGAGTA
65021774 AATGCATGTGTGAAAGTTTCAAGCATTAATTTGGTCATTTTTAAGTGAATTTATTAAAATGGACT
1 AATGCATGTGTGAAAGTTTCAAGCATTAATTTGGTCATTTTTAAGTGAATTTATTAAAATGGACT
65021839 TATATGAAACACTTTAGAAATGTGATAGGTTAATTTTTATAATGGTCTATTAGTGCATGTATTAA
66 TATATGAAACACTTTAGAAATGTGATAGGTTAATTTTTATAATGGTCTATTAGTGCATGTATTAA
*
65021904 AAAGAGTGGTTTTGCATGTCAATTTACCCATAATATATATAGTG
131 AAAGAGTGGTTTTGCATGTCAATTCACCCATAATATATATAGTG
65021948 AATGCATGTGTGAAAGTTTCAAGCATTAATTTGGTCATTTTTAAGTGAATTTATTAAAATGGACT
1 AATGCATGTGTGAAAGTTTCAAGCATTAATTTGGTCATTTTTAAGTGAATTTATTAAAATGGACT
65022013 TATATGAAACACTTTAGAAATGTGATAGGTTAATTTTTATAATGGTCTATTAGTGCATGTATTAA
66 TATATGAAACACTTTAGAAATGTGATAGGTTAATTTTTATAATGGTCTATTAGTGCATGTATTAA
65022078 AAAGAGTGGTTTTGCATGTCAATTCACCCATAATATATATAGT
131 AAAGAGTGGTTTTGCATGTCAATTCACCCATAATATATATAGT
65022121 TGCCGGCCAA
Statistics
Matches: 172, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 172 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (174 bp):
AATGCATGTGTGAAAGTTTCAAGCATTAATTTGGTCATTTTTAAGTGAATTTATTAAAATGGACT
TATATGAAACACTTTAGAAATGTGATAGGTTAATTTTTATAATGGTCTATTAGTGCATGTATTAA
AAAGAGTGGTTTTGCATGTCAATTCACCCATAATATATATAGTG
Found at i:65025326 original size:27 final size:27
Alignment explanation
Indices: 65025285--65025453 Score: 130
Period size: 27 Copynumber: 6.3 Consensus size: 27
65025275 TGGGCCATAG
*
65025285 GGTAAAATGATCGAAATACCCCCGTAA
1 GGTAAAATGAACGAAATACCCCCGTAA
*
65025312 GGTAAAATGAACGAAATACCCCTGTAA
1 GGTAAAATGAACGAAATACCCCCGTAA
* * * *
65025339 GGTAAAATGATCGAAATA-CTCCATAG
1 GGTAAAATGAACGAAATACCCCCGTAA
* * *
65025365 GGTAAAATG-ACAAAAATACCCCCATAG
1 GGTAAAATGAAC-GAAATACCCCCGTAA
* * * * *
65025392 GGTAAATTGACCGAAATA-TCCTGATAG
1 GGTAAAATGAACGAAATACCCCCG-TAA
* *
65025419 GGTAAAATG-ACTGTAATACCCCTGTAA
1 GGTAAAATGAAC-GAAATACCCCCGTAA
*
65025446 GATAAAAT
1 GGTAAAAT
65025454 TATTATTTTG
Statistics
Matches: 114, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
25 1 0.01
26 21 0.18
27 87 0.76
28 5 0.04
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (27 bp):
GGTAAAATGAACGAAATACCCCCGTAA
Found at i:65025437 original size:80 final size:80
Alignment explanation
Indices: 65025279--65025428 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
65025269 CCATTCTGGG
* *
65025279 CCATAGGGTAAAATGATCGAAATACCCCCGTAAGGTAAAATGAACGAAATACCCCTGTAAGGTAA
1 CCATAGGGTAAAATGATCAAAATACCCCCATAAGGTAAAATGAACGAAATACCCCTGTAAGGTAA
65025344 AATGATCGAAATACT
66 AATGATCGAAATACT
* * * * *
65025359 CCATAGGGTAAAATGA-CAAAAATACCCCCATAGGGTAAATTGACCGAAATA-TCCTGATAGGGT
1 CCATAGGGTAAAATGATC-AAAATACCCCCATAAGGTAAAATGAACGAAATACCCCTG-TAAGGT
65025422 AAAATGA
64 AAAATGA
65025429 CTGTAATACC
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 5 0.08
80 56 0.92
ACGTcount: A:0.43, C:0.18, G:0.19, T:0.20
Consensus pattern (80 bp):
CCATAGGGTAAAATGATCAAAATACCCCCATAAGGTAAAATGAACGAAATACCCCTGTAAGGTAA
AATGATCGAAATACT
Found at i:65025439 original size:54 final size:53
Alignment explanation
Indices: 65025279--65025440 Score: 177
Period size: 54 Copynumber: 3.0 Consensus size: 53
65025269 CCATTCTGGG
* *
65025279 CCATAGGGTAAAATGATCGAAATACCCCCG-TAAGGTAAAATGAACGAAATACCC
1 CCATAGGGTAAAATGATCGAAATA-CTCCGATAGGGTAAAATG-ACGAAATACCC
** * *
65025333 CTGTAAGGTAAAATGATCGAAATACTCC-ATAGGGTAAAATGACAAAAATACCC
1 CCATAGGGTAAAATGATCGAAATACTCCGATAGGGTAAAATGAC-GAAATACCC
* * *
65025386 CCATAGGGTAAATTGACCGAAATA-TCCTGATAGGGTAAAATGACTGTAATACCC
1 CCATAGGGTAAAATGATCGAAATACTCC-GATAGGGTAAAATGAC-GAAATACCC
65025440 C
1 C
65025441 TGTAAGATAA
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
52 5 0.06
53 41 0.46
54 44 0.49
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (53 bp):
CCATAGGGTAAAATGATCGAAATACTCCGATAGGGTAAAATGACGAAATACCC
Found at i:65025505 original size:27 final size:27
Alignment explanation
Indices: 65025458--65025557 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 27
65025448 TAAAATTATT
**
65025458 ATTTTGCCCGTATG-GGTTAAAATGACG
1 ATTTTGCCATTATGAGG-TAAAATGACG
* * *
65025485 ATTTTGCCATTATTATGTAAAATCACG
1 ATTTTGCCATTATGAGGTAAAATGACG
* * *
65025512 GTTTTGCCCTTATGAGGTAAAATGACT
1 ATTTTGCCATTATGAGGTAAAATGACG
* * *
65025539 ATTTTACCCTTATGTGGTA
1 ATTTTGCCATTATGAGGTA
65025558 GGATGACTAT
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (27 bp):
ATTTTGCCATTATGAGGTAAAATGACG
Found at i:65025563 original size:27 final size:27
Alignment explanation
Indices: 65025513--65025580 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
65025503 AAAATCACGG
* *
65025513 TTTTGCCCTTATGAGGTAAAATGACTA
1 TTTTACCCTTATGTGGTAAAATGACTA
**
65025540 TTTTACCCTTATGTGGTAGGATGACTA
1 TTTTACCCTTATGTGGTAAAATGACTA
*
65025567 TTTTTCCC-TATGTG
1 TTTTACCCTTATGTG
65025581 ATGTATGTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 6 0.17
27 30 0.83
ACGTcount: A:0.22, C:0.16, G:0.19, T:0.43
Consensus pattern (27 bp):
TTTTACCCTTATGTGGTAAAATGACTA
Found at i:65025930 original size:18 final size:18
Alignment explanation
Indices: 65025904--65025958 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
65025894 GGACTTGCAT
65025904 ACTGTTTACTATTACTGC
1 ACTGTTTACTATTACTGC
* * *
65025922 ACTGGTTACTGTGACTGC
1 ACTGTTTACTATTACTGC
*
65025940 ACTATTTACTATTACTGC
1 ACTGTTTACTATTACTGC
65025958 A
1 A
65025959 ATGGGCCAAG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.40
Consensus pattern (18 bp):
ACTGTTTACTATTACTGC
Found at i:65028907 original size:27 final size:27
Alignment explanation
Indices: 65028759--65028932 Score: 179
Period size: 27 Copynumber: 6.4 Consensus size: 27
65028749 TGGGCCAGAA
* *
65028759 GGTAGAATGACCGAAATAGCCCCC-TAG
1 GGTAAAATGACTGAAATA-CCCCCGTAG
* *
65028786 GGTAAAATGACTGACATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCCGTAG
* *
65028813 GGTAAATTGACTGAAATACCCCAGTAG
1 GGTAAAATGACTGAAATACCCCCGTAG
* *
65028840 GGTAAGATGACTGAAATACCCCCATAG
1 GGTAAAATGACTGAAATACCCCCGTAG
* * **
65028867 GGTGAAATGACTGTAATACCCTTGTAG
1 GGTAAAATGACTGAAATACCCCCGTAG
** ** *
65028894 GGTAAAATGACTGTGATACCCTTGTAA
1 GGTAAAATGACTGAAATACCCCCGTAG
65028921 GGTAAAATGACT
1 GGTAAAATGACT
65028933 ATTTTGCCCT
Statistics
Matches: 126, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 5 0.04
27 121 0.96
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACTGAAATACCCCCGTAG
Found at i:65028913 original size:81 final size:81
Alignment explanation
Indices: 65028753--65028932 Score: 204
Period size: 81 Copynumber: 2.2 Consensus size: 81
65028743 CCATATTGGG
* *
65028753 CCAG-AAGGTAGAATGACCGAAATAGCCCCCTAGGGTAAAATGACTGACATACCCCCATAGGGTA
1 CCAGTAAGGTAAAATGACTGAAATAGCCCCCTAGGGTAAAATGACTGACATACCCCCATAGGGTA
*
65028817 AATTGACTGAAATACC
66 AAATGACTGAAATACC
* * * ***
65028833 CCAGTAGGGTAAGATGACTGAAATA-CCCCCATAGGGTGAAATGACTGTA-ATACCCTTGTAGGG
1 CCAGTAAGGTAAAATGACTGAAATAGCCCCC-TAGGGTAAAATGACTG-ACATACCCCCATAGGG
**
65028896 TAAAATGACTGTGATACC
64 TAAAATGACTGAAATACC
**
65028914 CTTGTAAGGTAAAATGACT
1 CCAGTAAGGTAAAATGACT
65028933 ATTTTGCCCT
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
80 9 0.11
81 72 0.88
82 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.22
Consensus pattern (81 bp):
CCAGTAAGGTAAAATGACTGAAATAGCCCCCTAGGGTAAAATGACTGACATACCCCCATAGGGTA
AAATGACTGAAATACC
Found at i:65028942 original size:27 final size:27
Alignment explanation
Indices: 65028885--65029048 Score: 156
Period size: 27 Copynumber: 6.1 Consensus size: 27
65028875 GACTGTAATA
* * * ** *
65028885 CCCTTGTAGGGTAAAATGACTGTGATA
1 CCCTTATATGGTAAAATGACTATTTTG
* *
65028912 CCCTTGTAAGGTAAAATGACTATTTTG
1 CCCTTATATGGTAAAATGACTATTTTG
*
65028939 CCCTTATATGTTAAAATGA-TGATTTTG
1 CCCTTATATGGTAAAATGACT-ATTTTG
*
65028966 CCCTTATGTGGTAAAATGAC-AGTTTTG
1 CCCTTATATGGTAAAATGACTA-TTTTG
65028993 CCCTTATGA-GGT-AAATGACTATTTTG
1 CCCTTAT-ATGGTAAAATGACTATTTTG
* **
65029019 CCCTTATGTGGTAGGATGACTATTTTG
1 CCCTTATATGGTAAAATGACTATTTTG
65029046 CCC
1 CCC
65029049 CTATGTGATG
Statistics
Matches: 116, Mismatches: 14, Indels: 14
0.81 0.10 0.10
Matches are distributed among these distances:
26 24 0.21
27 92 0.79
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (27 bp):
CCCTTATATGGTAAAATGACTATTTTG
Found at i:65028956 original size:81 final size:80
Alignment explanation
Indices: 65028871--65029025 Score: 179
Period size: 81 Copynumber: 1.9 Consensus size: 80
65028861 CCATAGGGTG
* * *
65028871 AAATGACTG-TAATACCCTTGTAG-GGTAAAATGACTGTGATACCCTTGTAAGGTAAAATGACTA
1 AAATGA-TGATAATACCCTTAT-GTGGTAAAATGACAGTGATACCCTTATAAGGT-AAATGACTA
65028934 TTTTGCCCTTATATGTTA
63 TTTTGCCCTTATATGTTA
** * ** * *
65028952 AAATGATGATTTTGCCCTTATGTGGTAAAATGACAGTTTTGCCCTTATGAGGTAAATGACTATTT
1 AAATGATGATAATACCCTTATGTGGTAAAATGACAGTGATACCCTTATAAGGTAAATGACTATTT
65029017 TGCCCTTAT
66 TGCCCTTAT
65029026 GTGGTAGGAT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
80 24 0.39
81 38 0.61
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (80 bp):
AAATGATGATAATACCCTTATGTGGTAAAATGACAGTGATACCCTTATAAGGTAAATGACTATTT
TGCCCTTATATGTTA
Found at i:65029029 original size:53 final size:55
Alignment explanation
Indices: 65028921--65029053 Score: 177
Period size: 53 Copynumber: 2.5 Consensus size: 55
65028911 ACCCTTGTAA
*
65028921 GGTAAAATGACTATTTTGCCCTTAT-ATGTTAAAATGATGATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGATGGTAAAATGATGATTTTGCCCTTATGT
65028975 GGTAAAATGAC-AGTTTTGCCCTTATGA-GGT-AAATGACT-ATTTTGCCCTTATGT
1 GGTAAAATGACTA-TTTTGCCCTTATGATGGTAAAATGA-TGATTTTGCCCTTATGT
** *
65029028 GGTAGGATGACTATTTTGCCCCTATG
1 GGTAAAATGACTATTTTGCCCTTATG
65029054 TGATGTATGT
Statistics
Matches: 71, Mismatches: 4, Indels: 9
0.85 0.05 0.11
Matches are distributed among these distances:
53 43 0.61
54 27 0.38
55 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (55 bp):
GGTAAAATGACTATTTTGCCCTTATGATGGTAAAATGATGATTTTGCCCTTATGT
Found at i:65029053 original size:27 final size:27
Alignment explanation
Indices: 65028921--65029055 Score: 177
Period size: 27 Copynumber: 5.0 Consensus size: 27
65028911 ACCCTTGTAA
*
65028921 GGTAAAATGACTATTTTGCCCTTATAT
1 GGTAAAATGACTATTTTGCCCTTATGT
*
65028948 GTTAAAATGA-TGATTTTGCCCTTATGT
1 GGTAAAATGACT-ATTTTGCCCTTATGT
*
65028975 GGTAAAATGAC-AGTTTTGCCCTTATGA
1 GGTAAAATGACTA-TTTTGCCCTTATGT
65029002 GGT-AAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
** *
65029028 GGTAGGATGACTATTTTGCCCCTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
65029055 G
1 G
65029056 ATGTATGTTT
Statistics
Matches: 95, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
26 25 0.26
27 70 0.74
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCCCTTATGT
Found at i:65031990 original size:18 final size:18
Alignment explanation
Indices: 65031937--65031992 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
65031927 ACTTGCATAC
*
65031937 TGTTTACTGTTACTGCAC
1 TGTTTACTGTTACTGCAA
* *
65031955 TGATTACTGTGACTGCAA
1 TGTTTACTGTTACTGCAA
65031973 TGTTTACTGTTACTGCAA
1 TGTTTACTGTTACTGCAA
65031991 TG
1 TG
65031993 GGCCAAGGCC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (18 bp):
TGTTTACTGTTACTGCAA
Found at i:65033834 original size:20 final size:20
Alignment explanation
Indices: 65033809--65033863 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
65033799 TATAATCGAC
65033809 ACGAAGCCCACAATATCAAT
1 ACGAAGCCCACAATATCAAT
*
65033829 ACGAAGCCCACAATATCGAT
1 ACGAAGCCCACAATATCAAT
65033849 ACGAAGCCCACAATA
1 ACGAAGCCCACAATA
65033864 ACGGGACACA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.44, C:0.31, G:0.13, T:0.13
Consensus pattern (20 bp):
ACGAAGCCCACAATATCAAT
Found at i:65035722 original size:39 final size:39
Alignment explanation
Indices: 65035668--65035879 Score: 343
Period size: 39 Copynumber: 5.4 Consensus size: 39
65035658 AAGTCTGCTA
*
65035668 ACTTAGCTCGGATATAACACCAGCACAAATGCCTTCAGG
1 ACTTAGCCCGGATATAACACCAGCACAAATGCCTTCAGG
65035707 ACTTAGCCCGGATATAACACCAGCACAAATGCCTTCAGG
1 ACTTAGCCCGGATATAACACCAGCACAAATGCCTTCAGG
65035746 ACTTAGCCCGGATATAACACCAGCACAAATGCCTTCAGG
1 ACTTAGCCCGGATATAACACCAGCACAAATGCCTTCAGG
* * *
65035785 GCTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGG
1 ACTTAGCCCGGATATAACACCAGCACAAATGCCTTCAGG
* * *
65035824 ACTTAGCCCGGATATAACACCAGCACGAATACCTTCGGG
1 ACTTAGCCCGGATATAACACCAGCACAAATGCCTTCAGG
**
65035863 ACTTAGCCAAGATATAA
1 ACTTAGCCCGGATATAA
65035880 TTCTCCATTA
Statistics
Matches: 165, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 165 1.00
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.19
Consensus pattern (39 bp):
ACTTAGCCCGGATATAACACCAGCACAAATGCCTTCAGG
Found at i:65042311 original size:39 final size:39
Alignment explanation
Indices: 65042257--65042574 Score: 474
Period size: 39 Copynumber: 8.2 Consensus size: 39
65042247 TTAAGCCTGA
* * * *
65042257 ATATAATATCAGCACGAATGCCTTTGGGGCTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
*
65042296 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCTCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* **
65042335 ATATAACACCAGCACGAATGACTTCGGGACTTCTCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* * *
65042374 ATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCAG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
*
65042413 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCTCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* **
65042452 ATATAACACCAGCACGAATGACTTCGGGACTTCTCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
* * *
65042491 ATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCAG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
65042530 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
1 ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
65042569 ATATAA
1 ATATAA
65042575 TTCTCCATTA
Statistics
Matches: 247, Mismatches: 32, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 247 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (39 bp):
ATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGG
Found at i:65042463 original size:117 final size:117
Alignment explanation
Indices: 65042257--65042574 Score: 582
Period size: 117 Copynumber: 2.7 Consensus size: 117
65042247 TTAAGCCTGA
* * * * *
65042257 ATATAATATCAGCACGAATGCCTTTGGGGCTTAGCCCGGATATAACACCAGCACGAATGCCTTCG
1 ATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCAGATATAACACCAGCACGAATGCCTTCG
65042322 GGACTTAGCTCGGATATAACACCAGCACGAATGACTTCGGGACTTCTCCCGG
66 GGACTTAGCTCGGATATAACACCAGCACGAATGACTTCGGGACTTCTCCCGG
65042374 ATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCAGATATAACACCAGCACGAATGCCTTCG
1 ATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCAGATATAACACCAGCACGAATGCCTTCG
65042439 GGACTTAGCTCGGATATAACACCAGCACGAATGACTTCGGGACTTCTCCCGG
66 GGACTTAGCTCGGATATAACACCAGCACGAATGACTTCGGGACTTCTCCCGG
65042491 ATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCAGATATAACACCAGCACGAATGCCTTCG
1 ATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCAGATATAACACCAGCACGAATGCCTTCG
*
65042556 GGACTTAGCCCGGATATAA
66 GGACTTAGCTCGGATATAA
65042575 TTCTCCATTA
Statistics
Matches: 195, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 195 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (117 bp):
ATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCAGATATAACACCAGCACGAATGCCTTCG
GGACTTAGCTCGGATATAACACCAGCACGAATGACTTCGGGACTTCTCCCGG
Found at i:65045363 original size:27 final size:27
Alignment explanation
Indices: 65045316--65045578 Score: 262
Period size: 27 Copynumber: 9.7 Consensus size: 27
65045306 TAGAATACTT
* *
65045316 TAGTTTATCAAATTACCAAAATACCCC
1 TAGTTTGTAAAATTACCAAAATACCCC
* * * ** **
65045343 TGGTTTGTATAATCAATAAAATACCGT
1 TAGTTTGTAAAATTACCAAAATACCCC
* * *
65045370 TGGTTTATAAAATTACCAAAATGCCCC
1 TAGTTTGTAAAATTACCAAAATACCCC
65045397 TAGTTTGTAAAATTACCAAAATACCCC
1 TAGTTTGTAAAATTACCAAAATACCCC
*
65045424 TAGTTTGTAAAATTACCAAAATACCCT
1 TAGTTTGTAAAATTACCAAAATACCCC
*
65045451 TAGTTTGTAAAATTATCAAAATACCCC
1 TAGTTTGTAAAATTACCAAAATACCCC
*
65045478 TAGTTTATAAAATTACCAAAATACCCC
1 TAGTTTGTAAAATTACCAAAATACCCC
* **
65045505 T-GATTTGTGAAATTACTGAAATA-CCC
1 TAG-TTTGTAAAATTACCAAAATACCCC
* * **
65045531 TCGACTTGTAAAATTATTAAAATA-CCC
1 TAG-TTTGTAAAATTACCAAAATACCCC
* *
65045558 TCGACTTGTAAAATTACCAAA
1 TAG-TTTGTAAAATTACCAAA
65045579 GTACGCTTGA
Statistics
Matches: 199, Mismatches: 35, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
26 5 0.03
27 194 0.97
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
TAGTTTGTAAAATTACCAAAATACCCC
Found at i:65045597 original size:27 final size:27
Alignment explanation
Indices: 65045405--65045632 Score: 79
Period size: 27 Copynumber: 8.4 Consensus size: 27
65045395 CCTAGTTTGT
* * **
65045405 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAGTACCCTCGA-TTTAC
* * **
65045432 AAAATTACCAAAATACCCT-TAGTTTGT
1 AAAATTACCAAAGTACCCTCGA-TTTAC
* * * *
65045459 AAAATTATCAAAATACCC-CTAGTTTAT
1 AAAATTACCAAAGTACCCTCGA-TTTAC
* **
65045486 AAAATTACCAAAATACCC-CTGATTTGT
1 AAAATTACCAAAGTACCCTC-GATTTAC
* * * **
65045513 GAAATTACTGAAA-TACCCTCGACTTGT
1 AAAATTAC-CAAAGTACCCTCGATTTAC
** * * **
65045540 AAAATTATTAAAATACCCTCGACTTGT
1 AAAATTACCAAAGTACCCTCGATTTAC
* *
65045567 AAAATTACCAAAGTACGCTTGATTTAC
1 AAAATTACCAAAGTACCCTCGATTTAC
* ****
65045594 AAAATTATCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAGTACCCTCGATTTAC
65045621 AAAATTACCAAA
1 AAAATTACCAAA
65045633 ATATCCTTGT
Statistics
Matches: 165, Mismatches: 30, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.02
27 157 0.95
28 5 0.03
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAGTACCCTCGATTTAC
Found at i:65045661 original size:27 final size:27
Alignment explanation
Indices: 65045623--65045845 Score: 232
Period size: 27 Copynumber: 8.3 Consensus size: 27
65045613 CGATTTACAA
* *
65045623 AATTACCAAAATATCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
65045650 AAATACCAAAATGCCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
65045677 AATTACCGAAATACCCCTCTAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* ** *
65045704 AATTATCGCAATACCACTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
65045731 AATTACCGAAATACCACTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
65045758 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
65045785 AATTACTAAAATACCCCTGTAGAGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * *
65045812 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
65045838 AATTACCA
1 AATTACCA
65045846 TTTTGCCCCT
Statistics
Matches: 164, Mismatches: 32, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
26 15 0.09
27 149 0.91
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:65046323 original size:22 final size:22
Alignment explanation
Indices: 65046271--65046335 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
65046261 TTAAAGCCTT
* *
65046271 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
65046293 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
65046315 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
65046336 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:65046538 original size:26 final size:27
Alignment explanation
Indices: 65046494--65046555 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
65046484 ATTCTGTTAA
* *
65046494 GTGGCTTTGCCACATTATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
*
65046520 GTGGCTCTGCTACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
*
65046547 GTGACTCTG
1 GTGGCTCTG
65046556 TCATAATGTC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 19 0.61
27 12 0.39
ACGTcount: A:0.15, C:0.23, G:0.24, T:0.39
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:65046752 original size:31 final size:31
Alignment explanation
Indices: 65046704--65046837 Score: 232
Period size: 31 Copynumber: 4.3 Consensus size: 31
65046694 TTGCAGTCAC
*
65046704 ATTCTGATTTTTTATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
65046736 ATTCTGTTTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
65046767 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
65046798 ATTCTGATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
65046829 ATTCTGATT
1 ATTCTGATT
65046838 CTGTCACTTG
Statistics
Matches: 98, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
31 92 0.94
32 6 0.06
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:65046773 original size:6 final size:6
Alignment explanation
Indices: 65046727--65046879 Score: 84
Period size: 6 Copynumber: 24.8 Consensus size: 6
65046717 ATTCTGTTAC
* * * *
65046727 CTGATA CTGATT CTGTTT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
65046776 TTGATT CTG-TT ACCTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATAT
1 CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT CTGATT --CTGAT-T
* * *
65046827 -TGATT CTGATT CTG-TCA CTTGATT CAGATT TTGATT CTGATT CT-AGTT
1 CTGATT CTGATT CTGAT-T C-TGATT CTGATT CTGATT CTGATT CTGA-TT
65046875 CTGAT
1 CTGAT
65046880 AATGTTTCTT
Statistics
Matches: 112, Mismatches: 19, Indels: 32
0.69 0.12 0.20
Matches are distributed among these distances:
5 9 0.08
6 85 0.76
7 13 0.12
8 4 0.04
9 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.49
Consensus pattern (6 bp):
CTGATT
Found at i:65046774 original size:25 final size:26
Alignment explanation
Indices: 65046745--65046865 Score: 93
Period size: 31 Copynumber: 4.3 Consensus size: 26
65046735 GATTCTGTTT
65046745 TTGATTCTGTTACCTGATACTGATTC
1 TTGATTCTGTTACCTGATACTGATTC
65046771 TGATTTTGATTCTGTTACCTGATACTGATTC
1 -----TTGATTCTGTTACCTGATACTGATTC
*
65046802 TGATTTTGATTCTGTTACCTGATATTGATTC
1 -----TTGATTCTGTTACCTGATACTGATTC
* * * *
65046833 -TGATTCTGTCACTTGATTCAGATT-
1 TTGATTCTGTTACCTGATACTGATTC
65046857 TTGATTCTG
1 TTGATTCTG
65046866 ATTCTAGTTC
Statistics
Matches: 83, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
25 27 0.33
31 56 0.67
ACGTcount: A:0.19, C:0.16, G:0.17, T:0.49
Consensus pattern (26 bp):
TTGATTCTGTTACCTGATACTGATTC
Found at i:65046829 original size:19 final size:19
Alignment explanation
Indices: 65046745--65046834 Score: 64
Period size: 19 Copynumber: 5.5 Consensus size: 19
65046735 GATTCTGTTT
65046745 TTGATTCTGTTACCTGATA
1 TTGATTCTGTTACCTGATA
*
65046764 CTGATTCTG--A--T--T-
1 TTGATTCTGTTACCTGATA
65046776 TTGATTCTGTTACCTGATA
1 TTGATTCTGTTACCTGATA
*
65046795 CTGATTCTG--A--T--T-
1 TTGATTCTGTTACCTGATA
65046807 TTGATTCTGTTACCTGATA
1 TTGATTCTGTTACCTGATA
65046826 TTGATTCTG
1 TTGATTCTG
65046835 ATTCTGTCAC
Statistics
Matches: 53, Mismatches: 4, Indels: 28
0.62 0.05 0.33
Matches are distributed among these distances:
12 16 0.30
13 2 0.04
14 2 0.04
15 2 0.04
16 2 0.04
17 2 0.04
18 2 0.04
19 25 0.47
ACGTcount: A:0.19, C:0.16, G:0.17, T:0.49
Consensus pattern (19 bp):
TTGATTCTGTTACCTGATA
Found at i:65046862 original size:62 final size:61
Alignment explanation
Indices: 65046704--65046868 Score: 172
Period size: 62 Copynumber: 2.6 Consensus size: 61
65046694 TTGCAGTCAC
* * * *
65046704 ATTCTGATTTTTTATTCTGTTACCTGATACTGATTCTGTTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTCACTCTGTTA-CAGATACTGATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
65046767 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTTTCACTCTGTTA-CAGATACTGATTCTGATTTTGATTCTGTTACCTGATACTG
**
65046829 ATTCTGATTCTGTCACT-TGATT-CAGATTTTGATTCTGATT
1 ATTCTGATT-T-TCACTCTG-TTACAGATACTGATTCTGATT
65046869 CTAGTTCTGA
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
62 76 0.84
63 10 0.11
64 5 0.05
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (61 bp):
ATTCTGATTTTCACTCTGTTACAGATACTGATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:65047297 original size:20 final size:20
Alignment explanation
Indices: 65047272--65047312 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
65047262 ACGGTTTTCC
65047272 AAAGCAACTACTGTTGTTCA
1 AAAGCAACTACTGTTGTTCA
*
65047292 AAAGCAATTACTGTTGTTCA
1 AAAGCAACTACTGTTGTTCA
65047312 A
1 A
65047313 CACATCACGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.32
Consensus pattern (20 bp):
AAAGCAACTACTGTTGTTCA
Found at i:65048578 original size:27 final size:26
Alignment explanation
Indices: 65048479--65048625 Score: 120
Period size: 27 Copynumber: 5.5 Consensus size: 26
65048469 GAAGCTACCA
*
65048479 AAATACCC-CTGATTTGTGAAA-TACT
1 AAATACCCTC-GATTTGTAAAATTACT
* *
65048504 GAAATACCCTCGACTTGTAAAATTACC
1 -AAATACCCTCGATTTGTAAAATTACT
* * *
65048531 AAAGTACCCCCGGTTTATAAAATTACCT
1 AAA-TACCCTCGATTTGTAAAATTA-CT
* *
65048559 AAATATCCTCGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTA-CT
* *
65048586 AAATACCCT-TAGTTTGCAAAATTACT
1 AAATACCCTCGA-TTTGTAAAATTACT
65048612 GAAATACCCTCGAT
1 -AAATACCCTCGAT
65048626 NNNNNNNNNN
Statistics
Matches: 95, Mismatches: 19, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
26 22 0.23
27 68 0.72
28 5 0.05
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.31
Consensus pattern (26 bp):
AAATACCCTCGATTTGTAAAATTACT
Found at i:65048607 original size:54 final size:54
Alignment explanation
Indices: 65048500--65048625 Score: 148
Period size: 54 Copynumber: 2.3 Consensus size: 54
65048490 ATTTGTGAAA
* * *
65048500 TACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAAT
1 TACTGAAATACCCTCGATTTGTAAAATTACCAAAGTACCCCCAGTTTACAAAAT
* * ** *
65048554 TACCT-AAATATCCTCGATTTGTAAAATTATCGAAA-TACCCTTAGTTTGCAAAAT
1 TA-CTGAAATACCCTCGATTTGTAAAATTA-CCAAAGTACCCCCAGTTTACAAAAT
65048608 TACTGAAATACCCTCGAT
1 TACTGAAATACCCTCGAT
65048626 NNNNNNNNNN
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
53 2 0.03
54 52 0.87
55 6 0.10
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (54 bp):
TACTGAAATACCCTCGATTTGTAAAATTACCAAAGTACCCCCAGTTTACAAAAT
Found at i:65048967 original size:27 final size:27
Alignment explanation
Indices: 65048929--65049023 Score: 120
Period size: 27 Copynumber: 3.6 Consensus size: 27
65048919 NNNNNNNNNN
65048929 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
**
65048956 TAGGGTAGAATTACTAAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* * *
65048983 TAGGGTGGAATTACCGAGATA-CCTTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
65049009 TGGGGTAAAATTACC
1 TAGGGTAGAATTACC
65049024 ATTTTGCCCC
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
26 16 0.28
27 42 0.72
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (27 bp):
TAGGGTAGAATTACCGAAATACCCCTG
Found at i:65049717 original size:26 final size:27
Alignment explanation
Indices: 65049673--65049745 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
65049663 ATTCTGTTAA
* * *
65049673 GTGGCTTTGCCACATTATCTAT-TCTG
1 GTGGCTCTGCTACAATATCTATATCTG
*
65049699 GTGGCTCTGCTACAATATCTGTATCTG
1 GTGGCTCTGCTACAATATCTATATCTG
*
65049726 GTGACTCTG-TCACAATATCT
1 GTGGCTCTGCT-ACAATATCT
65049746 GATAACTTAG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
26 19 0.47
27 21 0.52
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCTACAATATCTATATCTG
Found at i:65049733 original size:27 final size:27
Alignment explanation
Indices: 65049695--65049746 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
65049685 CATTATCTAT
*
65049695 TCTGGTGGCTCTG-CTACAATATCTGTA
1 TCTGGTGACTCTGTC-ACAATATCTGTA
65049722 TCTGGTGACTCTGTCACAATATCTG
1 TCTGGTGACTCTGTCACAATATCTG
65049747 ATAACTTAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
TCTGGTGACTCTGTCACAATATCTGTA
Found at i:65049922 original size:6 final size:6
Alignment explanation
Indices: 65049913--65050033 Score: 97
Period size: 6 Copynumber: 19.7 Consensus size: 6
65049903 TACCTGATAT
* * *
65049913 TGATTC TGATTT TGATTC T-ATTACC TGATAC TGATTC TGATTT TGATTC
1 TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC
* * *
65049962 TG-TTACC TGATAC TGATTC TGATTC TGATTC TG-TCAC TTGATTC TGATTT
1 TGATT--C TGATTC TGATTC TGATTC TGATTC TGAT-TC -TGATTC TGATTC
65050012 TGATTC TGATTC T-AGTTC TGAT
1 TGATTC TGATTC TGA-TTC TGAT
65050034 AATGTTTCTT
Statistics
Matches: 92, Mismatches: 12, Indels: 22
0.73 0.10 0.17
Matches are distributed among these distances:
5 7 0.08
6 72 0.78
7 9 0.10
8 4 0.04
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.50
Consensus pattern (6 bp):
TGATTC
Found at i:65049928 original size:31 final size:31
Alignment explanation
Indices: 65049891--65050024 Score: 196
Period size: 31 Copynumber: 4.3 Consensus size: 31
65049881 ACATTATGAT
*
65049891 TTTTGATTCTGTTACCTGATATTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
*
65049922 TTTTGATTCTATTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
65049953 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
* * * * *
65049984 TTCTGATTCTGTCACTTGATTCTGATTTTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
*
65050015 TTCTGATTCT
1 TTTTGATTCT
65050025 AGTTCTGATA
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 95 1.00
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.51
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTGATACTGATTCTGA
Found at i:65050009 original size:37 final size:31
Alignment explanation
Indices: 65049894--65050049 Score: 190
Period size: 31 Copynumber: 5.1 Consensus size: 31
65049884 TTATGATTTT
* *
65049894 TGATTCTGTTACCTGATATTGATTCTGATTT
1 TGATTCTGTTACCTGATACTGATTCTGATTC
* *
65049925 TGATTCTATTACCTGATACTGATTCTGATTT
1 TGATTCTGTTACCTGATACTGATTCTGATTC
65049956 TGATTCTGTTACCTGATACTGATTCTGATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
* * * *
65049987 TGATTCTGTCACTTGATTCTGATTTTGATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTC
* * *
65050018 TGATTCTAGTT--CTGATAATGTTTCTTATTC
1 TGATTCT-GTTACCTGATACTGATTCTGATTC
65050048 TG
1 TG
65050050 TTATGGGCTA
Statistics
Matches: 109, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
30 15 0.14
31 92 0.84
32 2 0.02
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.50
Consensus pattern (31 bp):
TGATTCTGTTACCTGATACTGATTCTGATTC
Done.