Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 190 of 290
Found at i:65051036 original size:27 final size:27
Alignment explanation
Indices: 65050996--65051120 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
65050986 TCCAATTNCG
* **
65050996 GTAATTCTATCCTACAGGGGTATAGCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
65051023 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
65051050 GTAATTCTACCTTACAGGAGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
65051077 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
65051104 GTAATGCTAGCCTACAG
1 GTAATTCTACCCTACAG
65051121 ATATGAGATT
Statistics
Matches: 84, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:65051080 original size:54 final size:54
Alignment explanation
Indices: 65050994--65051120 Score: 184
Period size: 54 Copynumber: 2.4 Consensus size: 54
65050984 TATCCAATTN
*
65050994 CGGTAATTCTATCCTACAGGGGTATAGCAGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTATCCTACAGGAGTATAGCAGTAATTCTACCCTACAGGGGTATTT
***
65051048 CGGTAATTCTA-CCTTACAGGAGTATTTTAGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTATCC-TACAGGAGTATAGCAGTAATTCTACCCTACAGGGGTATTT
* *
65051102 CGGTAATGCTAGCCTACAG
1 CGGTAATTCTATCCTACAG
65051121 ATATGAGATT
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
53 2 0.03
54 62 0.94
55 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32
Consensus pattern (54 bp):
CGGTAATTCTATCCTACAGGAGTATAGCAGTAATTCTACCCTACAGGGGTATTT
Found at i:65053490 original size:16 final size:16
Alignment explanation
Indices: 65053469--65053499 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65053459 ATCCCAACCC
*
65053469 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
65053485 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
65053500 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:65055666 original size:6 final size:6
Alignment explanation
Indices: 65055636--65055679 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
65055626 AAGAAAGATT
* *
65055636 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA AT
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT
65055680 GTGAATGCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 1 0.03
6 30 0.94
7 1 0.03
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:65055685 original size:12 final size:12
Alignment explanation
Indices: 65055636--65055685 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
65055626 AAGAAAGATT
65055636 ATCAGAACT-AGA
1 ATCAGAA-TGAGA
*
65055648 ATCAAAATGAGA
1 ATCAGAATGAGA
*
65055660 ATCAGAATCAGA
1 ATCAGAATGAGA
*
65055672 ATCAGAATGTGA
1 ATCAGAATGAGA
65055684 AT
1 AT
65055686 GCAATCCCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
11 1 0.03
12 31 0.97
ACGTcount: A:0.50, C:0.12, G:0.18, T:0.20
Consensus pattern (12 bp):
ATCAGAATGAGA
Found at i:65058608 original size:20 final size:20
Alignment explanation
Indices: 65058563--65058608 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
65058553 TAATCGGCAG
* *
65058563 AAAGCCCACAATATCGATAC
1 AAAGCCCACAATAACGACAC
*
65058583 AAAGCCCACAATAACGGCAC
1 AAAGCCCACAATAACGACAC
*
65058603 ACAGCC
1 AAAGCC
65058609 TTCGGTAACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.35, G:0.13, T:0.09
Consensus pattern (20 bp):
AAAGCCCACAATAACGACAC
Found at i:65062539 original size:10 final size:10
Alignment explanation
Indices: 65062524--65062549 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
65062514 CTTCTACGAC
65062524 AAAACAGCCT
1 AAAACAGCCT
65062534 AAAACAGCCT
1 AAAACAGCCT
65062544 AAAACA
1 AAAACA
65062550 TTTTATGCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.58, C:0.27, G:0.08, T:0.08
Consensus pattern (10 bp):
AAAACAGCCT
Found at i:65072581 original size:50 final size:50
Alignment explanation
Indices: 65072474--65072702 Score: 248
Period size: 49 Copynumber: 4.6 Consensus size: 50
65072464 TACGCATAGC
* * * *
65072474 AGCCTGCACTCAATACTACACATGCGACC-AATTATCCA-GTACACGTAGT
1 AGCCTGCACTTAGTACTACACACGTGACCTAATTAT-CAGGTACACGTAGT
** * *
65072523 AGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGT
1 AGCCTGCACTTAGTACTACACACGTGACCTAATTATCAGGTACACGTAGT
* * * * * *
65072573 AGCCTGCACTCAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGT
1 AGCCTGCACTTAGTACTACACACGTGACCTAA-TTATCAGGTACACGTAGT
* * *
65072624 AGCCTGCACTTAGTACCACACATGCGACC-AATTATCAGGTACACGTAGT
1 AGCCTGCACTTAGTACTACACACGTGACCTAATTATCAGGTACACGTAGT
* *
65072673 AGCCTACACTTAATACTACACACGTGACCT
1 AGCCTGCACTTAGTACTACACACGTGACCT
65072703 CACAATAGAT
Statistics
Matches: 146, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
49 65 0.45
50 45 0.31
51 36 0.25
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (50 bp):
AGCCTGCACTTAGTACTACACACGTGACCTAATTATCAGGTACACGTAGT
Found at i:65074418 original size:15 final size:17
Alignment explanation
Indices: 65074400--65074431 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
65074390 TAGCATAATT
65074400 TACCAAA-TCA-ATTCA
1 TACCAAAGTCACATTCA
65074415 TACCAAAGTCACATTCA
1 TACCAAAGTCACATTCA
65074432 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.28, G:0.03, T:0.25
Consensus pattern (17 bp):
TACCAAAGTCACATTCA
Found at i:65077973 original size:28 final size:28
Alignment explanation
Indices: 65077887--65077981 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
65077877 TAGGATATGA
*
65077887 CATTGTGCTAAGTGAAATAAGACCATGG
1 CATTGTGCTAAGTGAAATAAGTCCATGG
*
65077915 CA---T-CTAAGTGAAATAAGTCCACGG
1 CATTGTGCTAAGTGAAATAAGTCCATGG
* * *
65077939 TAATGTGCTAACTGAAATAAGTCCATGG
1 CATTGTGCTAAGTGAAATAAGTCCATGG
*
65077967 CATTGTGCTACGTGA
1 CATTGTGCTAAGTGA
65077982 GAAATTTCCC
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
24 20 0.37
25 1 0.02
27 1 0.02
28 32 0.59
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (28 bp):
CATTGTGCTAAGTGAAATAAGTCCATGG
Found at i:65078081 original size:51 final size:50
Alignment explanation
Indices: 65078005--65078151 Score: 195
Period size: 51 Copynumber: 2.9 Consensus size: 50
65077995 TGAACCTTAG
* * *
65078005 GAATAAACTAGCTTTGGACAGAAGTGTGGTACTATGTGAATGCCACTTTAT
1 GAATAAA-TAGCTTTGGATACAAGTGTGGTACTATGTGAAAGCCACTTTAT
* *
65078056 GAATATAATAGCTTTGGATACAAGTGTGGTACTGTGTGAAAGCCACTTTGT
1 GAATA-AATAGCTTTGGATACAAGTGTGGTACTATGTGAAAGCCACTTTAT
* * *
65078107 GAATAAAATAGCTTTGGCTACAAGGGTGGTACTATGTGAAGGCCA
1 GAAT-AAATAGCTTTGGATACAAGTGTGGTACTATGTGAAAGCCA
65078152 TCATGTATCC
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 82 0.96
52 3 0.04
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (50 bp):
GAATAAATAGCTTTGGATACAAGTGTGGTACTATGTGAAAGCCACTTTAT
Found at i:65082141 original size:48 final size:48
Alignment explanation
Indices: 65082030--65082345 Score: 363
Period size: 48 Copynumber: 6.6 Consensus size: 48
65082020 TGAGATTCCA
* * * * **
65082030 TGTAAGACCATGTCAGGGACATGGCATCAGC-ATCCGAGATAGGTGCTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGAT--GATATATGTGCCAG
* * * * *
65082079 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTAATATGTATGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAG
*
65082127 TGTAAGACCATGTCTGGGACATGGCAAT-GACGATGATATATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGC-ATCGGCGATGATATATGTGCCAG
*
65082175 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATGTATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAG
* * * *
65082223 TGTAAGATCATGTCCGGGACATGGCATCGACAATGATATATGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAG
* * *
65082271 TGTAAGACCATGTCTTGGACATGGCATCAGCGATGATATATG-GATTCA-
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTG--CCAG
65082319 TGTAAGACCATGT-TGGGGACATGGCAT
1 TGTAAGACCATGTCT-GGGACATGGCAT
65082346 TGGTACTTTA
Statistics
Matches: 229, Mismatches: 32, Indels: 13
0.84 0.12 0.05
Matches are distributed among these distances:
47 4 0.02
48 191 0.83
49 33 0.14
50 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAG
Found at i:65086522 original size:16 final size:18
Alignment explanation
Indices: 65086501--65086533 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
65086491 CATACAGGCT
65086501 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
65086517 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
65086534 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:65087168 original size:44 final size:44
Alignment explanation
Indices: 65087062--65087279 Score: 203
Period size: 44 Copynumber: 5.0 Consensus size: 44
65087052 CCAAATTCAT
* * * *
65087062 TCACCGGCATTTCGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCAGCATTTAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* * * *
65087104 TCACCGGCATTATAGCCTGCTACGCTCGATGGCCCGAATAGTATC
1 TCACCAGCATT-TAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
** * *
65087149 TCACCAGCATTTTTCCTGCTAGGCTCGAA-GCCCAAATAGTATC
1 TCACCAGCATTTAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
65087192 TCA-CTGCCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCAG-CATT-TAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * * * *
65087237 TTACCGGTATTTCGCCTGTTAGGCTCAAAGGCCCGAATAGTAT
1 TCACCAGCATTTAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
65087280 TGTATGATAT
Statistics
Matches: 148, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
42 13 0.09
43 35 0.24
44 64 0.43
45 33 0.22
46 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (44 bp):
TCACCAGCATTTAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:65087236 original size:88 final size:87
Alignment explanation
Indices: 65087062--65087279 Score: 267
Period size: 88 Copynumber: 2.5 Consensus size: 87
65087052 CCAAATTCAT
* * *
65087062 TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCCGATA-TCATTTCACCGGCATTATAGCCTGCTA
1 TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCCAATAGT-ATCTCACCGCCATTATAGCCTGCTA
* *
65087126 CGCTCGATGGCCCGAATAGTATC
65 CGCTCAAAGGCCCGAATAGTATC
* ** *
65087149 TCACCAGCATTTTTCCTGCTAGGCTCGAAGCCCAAATAGTATCTCACTGCCATTATAGCCTGCTA
1 TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCC-AATAGTATCTCACCGCCATTATAGCCTGCTA
*
65087214 GGCTCAAAGGCCCGAATAGTATC
65 CGCTCAAAGGCCCGAATAGTATC
* * * *
65087237 TTACCGGTATTTCGCCTGTTAGGCTCAAAGGCCCGAATAGTAT
1 TCACCGGCATTTCGCCTGCTAGGCTCGAA-GCCC-AATAGTAT
65087280 TGTATGATAT
Statistics
Matches: 110, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
87 30 0.27
88 67 0.61
89 13 0.12
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (87 bp):
TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCCAATAGTATCTCACCGCCATTATAGCCTGCTAC
GCTCAAAGGCCCGAATAGTATC
Found at i:65088138 original size:47 final size:47
Alignment explanation
Indices: 65088082--65088224 Score: 259
Period size: 47 Copynumber: 3.0 Consensus size: 47
65088072 AAAATTTTCT
* * *
65088082 TTAACTAAGTAACTTATTCGGAAATGTTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
65088129 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
65088176 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
65088223 TT
1 TT
65088225 TAAATTCAAC
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 93 1.00
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (47 bp):
TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
Found at i:65090542 original size:21 final size:21
Alignment explanation
Indices: 65090518--65090561 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
65090508 AAAACACGGG
65090518 GATGAAGAATTCAGAGCTA-CT
1 GATGAAG-ATTCAGAGCTAGCT
* *
65090539 GATGATGATTCTGAGCTAGCT
1 GATGAAGATTCAGAGCTAGCT
65090560 GA
1 GA
65090562 ATTCTGGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (21 bp):
GATGAAGATTCAGAGCTAGCT
Found at i:65101848 original size:22 final size:22
Alignment explanation
Indices: 65101823--65101894 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
65101813 ACTAAAAAAA
65101823 TCATATAGTTCATATACATTTC
1 TCATATAGTTCATATACATTTC
****
65101845 TCATAT--TTCCAATTATA-AAAAA
1 TCATATAGTT-C-A-TATACATTTC
65101867 TCATATAGTTCATATACATTTC
1 TCATATAGTTCATATACATTTC
65101889 TCATAT
1 TCATAT
65101895 TTCCAATTCA
Statistics
Matches: 36, Mismatches: 8, Indels: 12
0.64 0.14 0.21
Matches are distributed among these distances:
20 2 0.06
21 5 0.14
22 22 0.61
23 5 0.14
24 2 0.06
ACGTcount: A:0.38, C:0.17, G:0.03, T:0.43
Consensus pattern (22 bp):
TCATATAGTTCATATACATTTC
Found at i:65101866 original size:44 final size:44
Alignment explanation
Indices: 65101817--65101902 Score: 172
Period size: 44 Copynumber: 2.0 Consensus size: 44
65101807 CCAAATACTA
65101817 AAAAAATCATATAGTTCATATACATTTCTCATATTTCCAATTAT
1 AAAAAATCATATAGTTCATATACATTTCTCATATTTCCAATTAT
65101861 AAAAAATCATATAGTTCATATACATTTCTCATATTTCCAATT
1 AAAAAATCATATAGTTCATATACATTTCTCATATTTCCAATT
65101903 CATTTGCACA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.41, C:0.16, G:0.02, T:0.41
Consensus pattern (44 bp):
AAAAAATCATATAGTTCATATACATTTCTCATATTTCCAATTAT
Found at i:65102019 original size:34 final size:32
Alignment explanation
Indices: 65101981--65102062 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 32
65101971 TTATTCTCAA
65101981 ATATAGT-ATACTTTTCAAACGTACCTGAATTGCT
1 ATATAGTCATACTTTT---ACGTACCTGAATTGCT
* * *
65102015 ATATATTCATTCTTTTACGTACCTGAATTGTT
1 ATATAGTCATACTTTTACGTACCTGAATTGCT
* *
65102047 ATATATTCATTCTTTT
1 ATATAGTCATACTTTT
65102063 CTCTGAATGC
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
32 31 0.70
34 6 0.14
35 7 0.16
ACGTcount: A:0.28, C:0.16, G:0.09, T:0.48
Consensus pattern (32 bp):
ATATAGTCATACTTTTACGTACCTGAATTGCT
Found at i:65102035 original size:32 final size:32
Alignment explanation
Indices: 65101999--65102062 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
65101989 TACTTTTCAA
65101999 ACGTACCTGAATTGCTATATATTCATTCTTTT
1 ACGTACCTGAATTGCTATATATTCATTCTTTT
*
65102031 ACGTACCTGAATTGTTATATATTCATTCTTTT
1 ACGTACCTGAATTGCTATATATTCATTCTTTT
65102063 CTCTGAATGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.25, C:0.17, G:0.09, T:0.48
Consensus pattern (32 bp):
ACGTACCTGAATTGCTATATATTCATTCTTTT
Found at i:65109999 original size:50 final size:49
Alignment explanation
Indices: 65109889--65110064 Score: 181
Period size: 50 Copynumber: 3.5 Consensus size: 49
65109879 CTGGTACGCA
* * * * ** *
65109889 TAGTAGGCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
*
65109938 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
**** * * * *
65109988 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACCATCCGATACACG
65110039 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
65110065 TGCGACCTCA
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
49 29 0.27
50 43 0.40
51 35 0.32
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:65110072 original size:101 final size:99
Alignment explanation
Indices: 65109889--65110072 Score: 251
Period size: 101 Copynumber: 1.8 Consensus size: 99
65109879 CTGGTACGCA
* * *
65109889 TAGTAGGCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
65109954 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * * * *
65109988 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACATAGTACTACACACGCGA-C-CAATTATCCGGTACACATAGTAGCCTGCACT
*
65110053 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
65110073 CACAATAGAT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 27 0.38
100 1 0.01
101 44 0.61
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:65128465 original size:46 final size:45
Alignment explanation
Indices: 65128364--65128576 Score: 173
Period size: 46 Copynumber: 4.6 Consensus size: 45
65128354 GTGCTAATGC
* *
65128364 CATGTCCCAGACATCGTCTTACACT-GAC-ACATCTCGTA-GCCGGTG
1 CATGTCCCAGACAT-GTCTTACACTAG-CTTCATCTCG-AGGCCGATG
* *
65128409 CATGTTCCAGACATGTCTTACACTAGCTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-CATCTCGAGGCCGATG
* * * * **
65128455 CATATCCCAGACATGTCTTACACTAGCACTCGTCTCAATACCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TTCATCTCGAGGCCGATG
* * * ** *
65128501 CCATGTCCCCGACATGGTCTTACACTGGCTCTCATAAT-TTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCT-TCAT-CTCGAGGCCGATG
65128549 CATGTCCCAGACATGTCTTACACTAGCT
1 CATGTCCCAGACATGTCTTACACTAGCT
65128577 CACACAAGTG
Statistics
Matches: 136, Mismatches: 23, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
44 11 0.08
45 15 0.11
46 63 0.46
47 26 0.19
48 20 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCATCTCGAGGCCGATG
Found at i:65128999 original size:30 final size:30
Alignment explanation
Indices: 65128920--65129001 Score: 146
Period size: 30 Copynumber: 2.7 Consensus size: 30
65128910 TATCTTTGGT
*
65128920 AAAATGACCATTTTGCCCATAGACTTTAAC
1 AAAATGACCATTTTGCCCCTAGACTTTAAC
65128950 AAAATGACCATTTTGCCCCTAGACTTTAAC
1 AAAATGACCATTTTGCCCCTAGACTTTAAC
*
65128980 AAAATGACCATTTTACCCCTAG
1 AAAATGACCATTTTGCCCCTAG
65129002 GCCCGAAAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.29
Consensus pattern (30 bp):
AAAATGACCATTTTGCCCCTAGACTTTAAC
Found at i:65137107 original size:49 final size:46
Alignment explanation
Indices: 65137035--65137153 Score: 145
Period size: 49 Copynumber: 2.6 Consensus size: 46
65137025 AAACATCGAC
* *
65137035 GCCATGTCCCAGACATGGTCTTACACAAGTATAGTATATCTGT-GCCGAT
1 GCCATGTCCCAGACATGGTCTTACAC-AG-ACA-CATAT-TGTAGCCGAT
* *
65137084 GCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACAGACACATATTGTAGCCGAT
65137130 G-CATGTCCCAGACAT-GTCTTACAC
1 GCCATGTCCCAGACATGGTCTTACAC
65137154 TAGCTTACGT
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
44 9 0.14
45 17 0.26
46 10 0.15
47 2 0.03
48 1 0.02
49 26 0.40
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
GCCATGTCCCAGACATGGTCTTACACAGACACATATTGTAGCCGAT
Found at i:65137211 original size:46 final size:45
Alignment explanation
Indices: 65137078--65137297 Score: 180
Period size: 46 Copynumber: 4.8 Consensus size: 45
65137068 GTATATCTGT
*
65137078 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTTGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATC-TG-AG
65137124 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTC-TC-GAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC--AC-TCATCTGAG
* * * * *
65137170 GCTGATGCGTGTCCCAGACATGTCTTACACTAGCACTCGTCTTAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATC-TGAG
** * * * *
65137216 ATCGATGCGATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTGAG
* *
65137264 GCCGATGCATGTCCTAGACATGTCTTACCCTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
65137298 TCACACAAGT
Statistics
Matches: 141, Mismatches: 21, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
43 2 0.01
44 14 0.10
45 16 0.11
46 57 0.40
47 24 0.17
48 27 0.19
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTGAG
Found at i:65137271 original size:94 final size:91
Alignment explanation
Indices: 65137037--65137302 Score: 247
Period size: 94 Copynumber: 2.9 Consensus size: 91
65137027 ACATCGACGC
* *
65137037 CATGTCCCAGACATGGTCTTACACAAG-TAT-AGTATATCTGTGCCGATGCCATGTCCCAGACAT
1 CATGTCCCAGACATGGTCTTACACTAGCT-TCA-TA-ATGTG-GCCGATG-CATGTCCCAGACAT
* *
65137100 GGTCTTACACT-G-ACACATCTTGTAGCCGATG
61 -GTCTTACACTAGCACACATCTTATA-TCGATG
* * * * *
65137131 CATGTCCCAGACAT-GTCTTACACTAGCTTACGT-CTCGAGGCTGATGCGTGTCCCAGACATGTC
1 CATGTCCCAGACATGGTCTTACACTAGCTT-CATAAT-GTGGCCGATGCATGTCCCAGACATGTC
* *
65137194 TTACACTAGCACTCGTCTTAATATCGATG
64 TTACACTAGCACACATCTT-ATATCGATG
* *
65137223 CGATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCTAGACATGTC
1 C-ATGTCCCAGACATGGTCTTACACTAGCT-TCATAATGTGGCCGATGCATGTCCCAGACATGTC
* *
65137288 TTACCCTAGCTCACA
64 TTACACTAGCACACA
65137303 CAAGTGACCC
Statistics
Matches: 139, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
90 10 0.07
91 14 0.10
92 20 0.14
93 28 0.20
94 65 0.47
95 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (91 bp):
CATGTCCCAGACATGGTCTTACACTAGCTTCATAATGTGGCCGATGCATGTCCCAGACATGTCTT
ACACTAGCACACATCTTATATCGATG
Found at i:65145550 original size:6 final size:6
Alignment explanation
Indices: 65145539--65145571 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
65145529 GGTGGAAATA
*
65145539 TCTTCC TCTTCC TCTTCT TCTTCC TCTTCC TCT
1 TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCT
65145572 GTGTATCTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (6 bp):
TCTTCC
Found at i:65151243 original size:143 final size:143
Alignment explanation
Indices: 65150985--65151270 Score: 572
Period size: 143 Copynumber: 2.0 Consensus size: 143
65150975 AGCTTCGTCA
65150985 TTAGATGTGATTACTAGTACTTTTACTCTTTATGATACTTCTGTGATTGCATTGATAGACCTTGG
1 TTAGATGTGATTACTAGTACTTTTACTCTTTATGATACTTCTGTGATTGCATTGATAGACCTTGG
65151050 ATCAACACATTCTTATATCTGTGTGAATTTAGTACATAGTAAGACTTTGCCTGTAGAGTCTACTG
66 ATCAACACATTCTTATATCTGTGTGAATTTAGTACATAGTAAGACTTTGCCTGTAGAGTCTACTG
65151115 AATTCGTAATTAG
131 AATTCGTAATTAG
65151128 TTAGATGTGATTACTAGTACTTTTACTCTTTATGATACTTCTGTGATTGCATTGATAGACCTTGG
1 TTAGATGTGATTACTAGTACTTTTACTCTTTATGATACTTCTGTGATTGCATTGATAGACCTTGG
65151193 ATCAACACATTCTTATATCTGTGTGAATTTAGTACATAGTAAGACTTTGCCTGTAGAGTCTACTG
66 ATCAACACATTCTTATATCTGTGTGAATTTAGTACATAGTAAGACTTTGCCTGTAGAGTCTACTG
65151258 AATTCGTAATTAG
131 AATTCGTAATTAG
65151271 AGTATCGAAC
Statistics
Matches: 143, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
143 143 1.00
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (143 bp):
TTAGATGTGATTACTAGTACTTTTACTCTTTATGATACTTCTGTGATTGCATTGATAGACCTTGG
ATCAACACATTCTTATATCTGTGTGAATTTAGTACATAGTAAGACTTTGCCTGTAGAGTCTACTG
AATTCGTAATTAG
Found at i:65165157 original size:30 final size:30
Alignment explanation
Indices: 65165123--65165183 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
65165113 TCCTTAACTC
65165123 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
65165153 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
65165183 A
1 A
65165184 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:65169604 original size:30 final size:30
Alignment explanation
Indices: 65169570--65169630 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
65169560 TCCTTAACTC
65169570 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
65169600 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
65169630 A
1 A
65169631 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:65174067 original size:42 final size:43
Alignment explanation
Indices: 65174021--65174129 Score: 114
Period size: 43 Copynumber: 2.6 Consensus size: 43
65174011 GATTTACGTA
***
65174021 TAAGACCATGTCTGGGACATCGGCATC-ATATCTG-ATTTTGTG
1 TAAGACCATGTCTGGGACATCGGCATCGATAT-TGAATTACATG
* * **
65174063 TAAGACCCTTTCTGGGACAGAGGCATCGATATTGAATTACATG
1 TAAGACCATGTCTGGGACATCGGCATCGATATTGAATTACATG
* *
65174106 AAAGACCATGTCCGGGACATCGGC
1 TAAGACCATGTCTGGGACATCGGC
65174130 GTTGTACTTG
Statistics
Matches: 52, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
42 25 0.48
43 27 0.52
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATCGGCATCGATATTGAATTACATG
Found at i:65175331 original size:24 final size:21
Alignment explanation
Indices: 65175285--65175325 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
65175275 TTCCTATGCT
65175285 CTGCCTCCCTCGCTGCTGCCG
1 CTGCCTCCCTCGCTGCTGCCG
*
65175306 CTGCCTCCCTCTCTGCTGCC
1 CTGCCTCCCTCGCTGCTGCC
65175326 TCCGCTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.54, G:0.20, T:0.27
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGCTGCCG
Found at i:65175762 original size:13 final size:14
Alignment explanation
Indices: 65175737--65175765 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
65175727 TGATGAATTG
65175737 AATTAAACAATTAT
1 AATTAAACAATTAT
65175751 AATTAAAC-ATTAT
1 AATTAAACAATTAT
65175764 AA
1 AA
65175766 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:65175969 original size:16 final size:17
Alignment explanation
Indices: 65175932--65175970 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
65175922 AAAATATTAT
*
65175932 TTAATATTAGAAAGTTA
1 TTAATATTAGAAAGTAA
*
65175949 TTAATATTTGAAAG-AA
1 TTAATATTAGAAAGTAA
65175965 TTAATA
1 TTAATA
65175971 AATTCATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (17 bp):
TTAATATTAGAAAGTAA
Found at i:65178490 original size:68 final size:63
Alignment explanation
Indices: 65178343--65178522 Score: 166
Period size: 68 Copynumber: 2.8 Consensus size: 63
65178333 ATATAGTTCG
* *
65178343 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCAATTTATCTCGTA
1 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCGACCTAGCCAATATATCTCGTA
* * *
65178406 GCTCTCTTGT-CTACATGGTGTACACAT-AGTATCACCCATGCGACCTAGCTACATCATAATGTC
1 GCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGCGACCTAGC--CA--AT-ATATC
*
65178469 TTGTA
59 TCGTA
* ** * ** *
65178474 GCTCTCTTGTACACATGATGTGCACTCAGCACCATACATGTGACCTAGC
1 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCGACCTAGC
65178523 TACATACTAT
Statistics
Matches: 95, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
62 1 0.01
63 42 0.44
64 1 0.01
65 2 0.02
67 3 0.03
68 45 0.47
69 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (63 bp):
GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCGACCTAGCCAATATATCTCGTA
Found at i:65189149 original size:154 final size:153
Alignment explanation
Indices: 65188904--65189331 Score: 452
Period size: 154 Copynumber: 2.7 Consensus size: 153
65188894 TAACTAATGG
* ** * *
65188904 ACGGTGCCGTTTTGCTCAACACTTTTGCGGCGTTTTTAGAAAAATGCCGCTAATACTTCACCCAT
1 ACGGCGCCGTTTTGCTCAACACTTTTGCGGCGTTTTTAG-AAACCGCCGCTAATGCGTCA-CCAT
** *
65188969 TGCGGTAC-TTTTACAAAAACGCCGCTAATGCTTGAACTTTTTGCGGCGTTTTACG-AGAAACGC
64 TGCGG--CGTTTT-TTAAAACGCCGCTAATGCTTGAACTTTTTGCGGCGTTTTACGTA-AAAAGC
* *
65189032 CGCTAATGCCTC-AATAGCTCACCTACAC
125 CGCTAATGCCTCAAAGAGCTCACCAACAC
* * *
65189060 ACGGCGCCGTTTTGCTCAA-TCTTTTGCGACGTTTGTAGAAACCGCCGCTAATGCGTCACCTATT
1 ACGGCGCCGTTTTGCTCAACACTTTTGCGGCGTTTTTAGAAACCGCCGCTAATGCGTCACC-ATT
* * * * **
65189124 GCGGCGTTTTTGGTAAAACGCCGCTAATGCTTGAAGTTATAGCGGCATTTTTGGTAAAAAGCCGC
65 GCGGCGTTTTT--TAAAACGCCGCTAATGCTTGAACTTTTTGCGGCGTTTTACGTAAAAAGCCGC
*
65189189 TAATGCCTCAAAAGAGCTCACCAACAT
128 TAATGCCTC-AAAGAGCTCACCAACAC
* * * *
65189216 ACGGCACCGTTTTGCTCAACACTTTTGCGGCATTTTTTGACAACCGCCGCTAATGTGTCAGCCAT
1 ACGGCGCCGTTTTGCTCAACACTTTTGCGGCGTTTTTAGA-AACCGCCGCTAATGCGTCA-CCAT
* * *
65189281 TGCAGCGTTCTTTTATAAACGCCGCTAATGCTT-TATTTTTTGCGGCGTTTT
64 TGCGGCGTT-TTTTA-AAACGCCGCTAATGCTTGAACTTTTTGCGGCGTTTT
65189332 CTACATAAGC
Statistics
Matches: 227, Mismatches: 33, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
152 1 0.00
153 6 0.03
154 74 0.33
155 17 0.07
156 49 0.22
157 30 0.13
158 45 0.20
159 5 0.02
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.31
Consensus pattern (153 bp):
ACGGCGCCGTTTTGCTCAACACTTTTGCGGCGTTTTTAGAAACCGCCGCTAATGCGTCACCATTG
CGGCGTTTTTTAAAACGCCGCTAATGCTTGAACTTTTTGCGGCGTTTTACGTAAAAAGCCGCTAA
TGCCTCAAAGAGCTCACCAACAC
Found at i:65189151 original size:40 final size:41
Alignment explanation
Indices: 65189102--65189194 Score: 116
Period size: 41 Copynumber: 2.3 Consensus size: 41
65189092 TTGTAGAAAC
* * *
65189102 CGCCGCTAATGCGT-CACCTATTGCGGCGTTTTTGGTAAAA
1 CGCCGCTAATGCGTGAACCTATAGCGGCATTTTTGGTAAAA
* **
65189142 CGCCGCTAATGCTTGAAGTTATAGCGGCATTTTTGGTAAAA
1 CGCCGCTAATGCGTGAACCTATAGCGGCATTTTTGGTAAAA
*
65189183 AGCCGCTAATGC
1 CGCCGCTAATGC
65189195 CTCAAAAGAG
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 13 0.29
41 32 0.71
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.29
Consensus pattern (41 bp):
CGCCGCTAATGCGTGAACCTATAGCGGCATTTTTGGTAAAA
Found at i:65189479 original size:12 final size:12
Alignment explanation
Indices: 65189462--65189486 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
65189452 TTTGTCCAAA
65189462 CGCCGCTAAAAG
1 CGCCGCTAAAAG
65189474 CGCCGCTAAAAG
1 CGCCGCTAAAAG
65189486 C
1 C
65189487 CTATTTTGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.36, G:0.24, T:0.08
Consensus pattern (12 bp):
CGCCGCTAAAAG
Found at i:65202855 original size:25 final size:26
Alignment explanation
Indices: 65202799--65202855 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
65202789 TTTAATTAAA
* * *
65202799 TAAAAATTATTAATGATTCAATAAACT
1 TAAAAATTA-TAATAATTAAATAAAAT
*
65202826 GAAAAATTA-AATAATTAAATAAAAT
1 TAAAAATTATAATAATTAAATAAAAT
65202851 TAAAA
1 TAAAA
65202856 TTTAGGAGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 17 0.68
27 8 0.32
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.32
Consensus pattern (26 bp):
TAAAAATTATAATAATTAAATAAAAT
Found at i:65209249 original size:56 final size:56
Alignment explanation
Indices: 65209150--65209263 Score: 156
Period size: 56 Copynumber: 2.0 Consensus size: 56
65209140 AAGACCATGG
* *
65209150 TTTTCATATATCTGTGCGAGTAAGACCACGTTTAATACATTGGCATTGATATGTGA
1 TTTTCATATATCTGTGCGAGTAAGACCACGTTTAAGACATTGGCATCGATATGTGA
* * * ** *
65209206 TTTTTATATATGTGTGTGAGTAAGACCACGTTTGGGACGTTGGCATCGATATGTGA
1 TTTTCATATATCTGTGCGAGTAAGACCACGTTTAAGACATTGGCATCGATATGTGA
65209262 TT
1 TT
65209264 ACATGTAAGA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.39
Consensus pattern (56 bp):
TTTTCATATATCTGTGCGAGTAAGACCACGTTTAAGACATTGGCATCGATATGTGA
Found at i:65224552 original size:42 final size:43
Alignment explanation
Indices: 65224490--65224585 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 43
65224480 ATGATTTACA
* * *
65224490 TGTAAGACCATGTCTGGGACATTGGCA-TCATATTTGATTTTG
1 TGTAAAACCATGTCTAGGACAATGGCATTCATATTTGATTTTG
* * **
65224532 TGTAAAACCCTGTCTAGGACAATGGCATTGATATTTGATTACG
1 TGTAAAACCATGTCTAGGACAATGGCATTCATATTTGATTTTG
*
65224575 TGTAAGACCAT
1 TGTAAAACCAT
65224586 ATTTGGGACA
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 23 0.52
43 21 0.48
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (43 bp):
TGTAAAACCATGTCTAGGACAATGGCATTCATATTTGATTTTG
Found at i:65224595 original size:43 final size:42
Alignment explanation
Indices: 65224444--65224600 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 42
65224434 TATGTGCTTT
* * *
65224444 CGTGTAAGACCTTGTCTGGGACATTGGAATCGACT-TATGATTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATC-A-TATTTGA-TTA
* *
65224488 CATGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTT
1 CGTGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTA
* * * * * *
65224530 TGTGTAAAACCCTGTCTAGGACAATGGCATTGATATTTGATTA
1 CGTGTAAGACCATGTCTGGGACATTGGCA-TCATATTTGATTA
* *
65224573 CGTGTAAGACCATATTTGGGACATTGGC
1 CGTGTAAGACCATGTCTGGGACATTGGC
65224601 GTTGTACGAG
Statistics
Matches: 91, Mismatches: 20, Indels: 5
0.78 0.17 0.04
Matches are distributed among these distances:
42 26 0.29
43 37 0.41
44 28 0.31
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.34
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTA
Found at i:65231665 original size:8 final size:8
Alignment explanation
Indices: 65231652--65231676 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
65231642 ATTAGGGACT
65231652 AAAATGTG
1 AAAATGTG
65231660 AAAATGTG
1 AAAATGTG
65231668 AAAATGTG
1 AAAATGTG
65231676 A
1 A
65231677 GGGTTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:65239323 original size:53 final size:53
Alignment explanation
Indices: 65239167--65239332 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
65239157 GACGAAAAAT
* **
65239167 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
65239219 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
65239272 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
65239326 TATGTGA
1 -ATGTGA
65239333 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:65246841 original size:53 final size:53
Alignment explanation
Indices: 65246685--65246850 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
65246675 GACGAAAAAT
* **
65246685 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
65246737 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
65246790 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
65246844 TATGTGA
1 -ATGTGA
65246851 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:65254359 original size:53 final size:53
Alignment explanation
Indices: 65254203--65254368 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
65254193 GACGAAAAAT
* **
65254203 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
65254255 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
65254308 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
65254362 TATGTGA
1 -ATGTGA
65254369 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:65256523 original size:42 final size:41
Alignment explanation
Indices: 65256476--65256638 Score: 159
Period size: 43 Copynumber: 3.9 Consensus size: 41
65256466 ATCAAGATGT
65256476 GATTACATGTAAGACCATGTCTGGGACATTGGCATTTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTTATT-A
* * *
65256518 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT--TTATTA
* ** **
65256561 GATTTCATGTAAGACCCGGTCTGGGACAGTT-GCATCGATATA
1 GATTACATGTAAGACCATGTCTGGGACA-TTGGCATTTAT-TA
* * *
65256603 TGATTACATGTAAGACCATATTTGGGATA-TGGCATT
1 -GATTACATGTAAGACCATGTCTGGGACATTGGCATT
65256639 GTTCGAGCTT
Statistics
Matches: 97, Mismatches: 18, Indels: 12
0.76 0.14 0.09
Matches are distributed among these distances:
41 2 0.02
42 39 0.40
43 50 0.52
44 6 0.06
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (41 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTTATTA
Found at i:65256629 original size:43 final size:43
Alignment explanation
Indices: 65256475--65256621 Score: 176
Period size: 43 Copynumber: 3.4 Consensus size: 43
65256465 CATCAAGATG
**
65256475 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTTAT-TGA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATAT-A
* *
65256518 -GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTA-A
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATA
* **
65256559 TCGATTTCATGTAAGACCCGGTCTGGGACAGTT-GCATCGATATA
1 T-GATTACATGTAAGACCATGTCTGGGACA-TTGGCATCGATATA
65256603 TGATTACATGTAAGACCAT
1 TGATTACATGTAAGACCAT
65256622 ATTTGGGATA
Statistics
Matches: 87, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 35 0.40
43 47 0.54
44 4 0.05
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATA
Found at i:65256636 original size:85 final size:85
Alignment explanation
Indices: 65256476--65256637 Score: 195
Period size: 85 Copynumber: 1.9 Consensus size: 85
65256466 ATCAAGATGT
* ** * *
65256476 GATTACATGTAAGACCATGTCTGGGACATTGGCATTTATTGAGATTACGTGTAAGACCATGTCTG
1 GATTACATGTAAGACCAGGTCTGGGACATTGGCATCGATTGAGATTACATGTAAGACCATATCTG
65256541 GGACATTGGCATCGTTAATC
66 GGACATTGGCATCGTTAATC
* *
65256561 GATTTCATGTAAGACCCGGTCTGGGACAGTT-GCATCGATAT-ATGATTACATGTAAGACCATAT
1 GATTACATGTAAGACCAGGTCTGGGACA-TTGGCATCGAT-TGA-GATTACATGTAAGACCATAT
* *
65256624 TTGGGATA-TGGCAT
63 CTGGGACATTGGCAT
65256638 TGTTCGAGCT
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
85 38 0.58
86 27 0.42
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (85 bp):
GATTACATGTAAGACCAGGTCTGGGACATTGGCATCGATTGAGATTACATGTAAGACCATATCTG
GGACATTGGCATCGTTAATC
Found at i:65260519 original size:33 final size:33
Alignment explanation
Indices: 65260470--65260549 Score: 142
Period size: 33 Copynumber: 2.4 Consensus size: 33
65260460 GATACTGAGC
*
65260470 ATGACATCTTGCATTCACGTATGTTACCATGAT
1 ATGACATCCTGCATTCACGTATGTTACCATGAT
*
65260503 ATGACATCCTGTATTCACGTATGTTACCATGAT
1 ATGACATCCTGCATTCACGTATGTTACCATGAT
65260536 ATGACATCCTGCAT
1 ATGACATCCTGCAT
65260550 GGGCTTAGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (33 bp):
ATGACATCCTGCATTCACGTATGTTACCATGAT
Found at i:65268146 original size:33 final size:32
Alignment explanation
Indices: 65268100--65268161 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 32
65268090 TATCTGCATT
* *
65268100 TGATATTGATTCTGTTAATGGGCTAAGGCCAGC
1 TGATACTGATTCTGTGAA-GGGCTAAGGCCAGC
* *
65268133 TGATACTGTTTCTGTGAAGGGCTCAGGCC
1 TGATACTGATTCTGTGAAGGGCTAAGGCC
65268162 CAGTCTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 10 0.40
33 15 0.60
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (32 bp):
TGATACTGATTCTGTGAAGGGCTAAGGCCAGC
Found at i:65272922 original size:43 final size:43
Alignment explanation
Indices: 65272832--65272928 Score: 108
Period size: 43 Copynumber: 2.3 Consensus size: 43
65272822 TCAGATTATG
* * * *
65272832 TGTAAGACCATGTCTGGGACATTAGCACCGTTAATCGATTTCG
1 TGTAAGACCATGTCTGGGACAATAGCACCGATAATCGATTACA
* *
65272875 TGTAAGA-CACTGTCTGGGACAATGGCATCGATATAT-GATTACA
1 TGTAAGACCA-TGTCTGGGACAATAGCACCGATA-ATCGATTACA
65272918 TGTAAGACCAT
1 TGTAAGACCAT
65272929 ACTGGGATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
42 2 0.04
43 39 0.87
44 4 0.09
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAATAGCACCGATAATCGATTACA
Found at i:65278308 original size:78 final size:78
Alignment explanation
Indices: 65278179--65278334 Score: 312
Period size: 78 Copynumber: 2.0 Consensus size: 78
65278169 ATTATTTTTG
65278179 TAATTTAGTCCAAATTACTCAAAATCATCAAAAACTCCAATACAAAACATGTTAATCTAAAACAT
1 TAATTTAGTCCAAATTACTCAAAATCATCAAAAACTCCAATACAAAACATGTTAATCTAAAACAT
65278244 ATCTTTCATAATT
66 ATCTTTCATAATT
65278257 TAATTTAGTCCAAATTACTCAAAATCATCAAAAACTCCAATACAAAACATGTTAATCTAAAACAT
1 TAATTTAGTCCAAATTACTCAAAATCATCAAAAACTCCAATACAAAACATGTTAATCTAAAACAT
65278322 ATCTTTCATAATT
66 ATCTTTCATAATT
65278335 CATCATCAAA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 78 1.00
ACGTcount: A:0.46, C:0.19, G:0.03, T:0.32
Consensus pattern (78 bp):
TAATTTAGTCCAAATTACTCAAAATCATCAAAAACTCCAATACAAAACATGTTAATCTAAAACAT
ATCTTTCATAATT
Found at i:65278394 original size:72 final size:72
Alignment explanation
Indices: 65278303--65278447 Score: 290
Period size: 72 Copynumber: 2.0 Consensus size: 72
65278293 CCAATACAAA
65278303 ACATGTTAATCTAAAACATATCTTTCATAATTCATCATCAAAATACAAAAATCTCAAGCTCTCAA
1 ACATGTTAATCTAAAACATATCTTTCATAATTCATCATCAAAATACAAAAATCTCAAGCTCTCAA
65278368 CAATGGC
66 CAATGGC
65278375 ACATGTTAATCTAAAACATATCTTTCATAATTCATCATCAAAATACAAAAATCTCAAGCTCTCAA
1 ACATGTTAATCTAAAACATATCTTTCATAATTCATCATCAAAATACAAAAATCTCAAGCTCTCAA
65278440 CAATGGC
66 CAATGGC
65278447 A
1 A
65278448 TAACTCAAAA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.29
Consensus pattern (72 bp):
ACATGTTAATCTAAAACATATCTTTCATAATTCATCATCAAAATACAAAAATCTCAAGCTCTCAA
CAATGGC
Found at i:65279588 original size:6 final size:6
Alignment explanation
Indices: 65279570--65279657 Score: 83
Period size: 6 Copynumber: 14.3 Consensus size: 6
65279560 AAGAAACATT
*
65279570 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAGA ATCAGGA GA-CAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-GA -ATCAGA ATCAGA
* *
65279619 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
65279658 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.79
7 8 0.12
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:65279617 original size:31 final size:31
Alignment explanation
Indices: 65279579--65279657 Score: 115
Period size: 31 Copynumber: 2.5 Consensus size: 31
65279569 TATCAGAACT
*
65279579 AGAATCAGAATCAGAATTAGAATCAGG-AGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTA-AC
*
65279610 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
65279641 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
65279658 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
31 43 0.98
32 1 0.02
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:65279930 original size:27 final size:26
Alignment explanation
Indices: 65279882--65279933 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
65279872 ACGAGGCTGC
*
65279882 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
65279908 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
65279934 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:65280203 original size:27 final size:27
Alignment explanation
Indices: 65280173--65280359 Score: 196
Period size: 27 Copynumber: 7.0 Consensus size: 27
65280163 CCCTAGGGGG
* * * *
65280173 AAAATGGTAATTTTATAAATCGAGGTT
1 AAAACGGTAATTCTGTAAATCGAGGGT
*
65280200 AAAACGATAATTCTGTAAATCGAGGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
** * ** *
65280227 AAAATAGAAATTCTGTAAATTAAAGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
** *
65280254 AAAACAATAATTTTGTAAATCGAGGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
* *
65280281 AAAACAGTAATTCTATAAATCGAGGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
*
65280308 AAAACGGTAATTTTGTAAATCGAGGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
* *
65280335 AAATCGGTAATTCTATAAATC-AGGG
1 AAAACGGTAATTCTGTAAATCGAGGG
65280360 GTACTTTGGT
Statistics
Matches: 132, Mismatches: 28, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
26 4 0.03
27 128 0.97
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.29
Consensus pattern (27 bp):
AAAACGGTAATTCTGTAAATCGAGGGT
Found at i:65280362 original size:54 final size:53
Alignment explanation
Indices: 65280174--65280359 Score: 221
Period size: 54 Copynumber: 3.5 Consensus size: 53
65280164 CCTAGGGGGA
* * * *
65280174 AAATGGTAATTTTATAAATCGAGGTTAAAACGATAATTCTGTAAATCGAGGGT
1 AAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGT
* * ** * *
65280227 AAAATAGAAATTCTGTAAATTAAAGGTAAAACAATAATTTTGTAAATCGAGGGT
1 -AAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGT
* *
65280281 AAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
1 -AAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGT
*
65280335 AAATCGGTAATTCTATAAATC-AGGG
1 AAAT-AGTAATTCTATAAATCGAGGG
65280360 GTACTTTGGT
Statistics
Matches: 111, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
53 7 0.06
54 104 0.94
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (53 bp):
AAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGT
Found at i:65280362 original size:81 final size:81
Alignment explanation
Indices: 65280174--65280359 Score: 216
Period size: 81 Copynumber: 2.3 Consensus size: 81
65280164 CCTAGGGGGA
* * *
65280174 AAAT-GGTAATTTTATAAATCGAGGTTAAAACGATAATTCTGTAAATCGAGGGTAAAATAGAAAT
1 AAATCGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGAAAT
*
65280238 TCTGTAAATTAAAGGT
66 TCTGTAAATCAAAGGT
* ** * * *
65280254 AAAACAATAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTATAAATCGAGGGTAAAACGGTAA
1 AAATCGGTAATTTTATAAATCGAGGGTAAAACGA-TAATTCTATAAATCGAGGGTAAAACAGAAA
* * *
65280318 TTTTGTAAATCGAGGGT
65 TTCTGTAAATCAAAGGT
*
65280335 AAATCGGTAATTCTATAAATC-AGGG
1 AAATCGGTAATTTTATAAATCGAGGG
65280360 GTACTTTGGT
Statistics
Matches: 86, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
80 8 0.09
81 78 0.91
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (81 bp):
AAATCGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACAGAAAT
TCTGTAAATCAAAGGT
Found at i:65280400 original size:81 final size:80
Alignment explanation
Indices: 65280315--65281121 Score: 523
Period size: 81 Copynumber: 10.0 Consensus size: 80
65280305 GGTAAAACGG
* ** * *
65280315 TAATTTTGTAAATCGAGGGTAAATCGGTAATTCTATAAATCAGGGGTACTTTGGTAATTTTAC-A
1 TAATTTTGTAAATCAAGGGTATTTCGGTAATT-TACAAATCAGGGGTATTTTGGTAATTTTACAA
* *
65280379 AGTTGAGGGTATTTCAA
65 ACTAG-GGGTATTTCAA
** ** * *
65280396 TAATTTTACAGGTCAAGGGTATTTCAGTAATTTCACAAATCAAGGGTATTTTGGTAATTTTACAA
1 TAATTTTGTAAATCAAGGGTATTTCGGTAATTT-ACAAATCAGGGGTATTTTGGTAATTTTACAA
***
65280461 ACTAGGGGTATTTTGG
65 ACTAGGGGTATTTCAA
* * **
65280477 TAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTA
1 TAATTTTGTAAATCAAGGGTATTTCGGTAA-TTTACAAATC-AGGGGTATTTTGGTAATTTTACA
* * ***
65280541 AACCAAGGGTATTTTGG
64 AACTAGGGGTATTTCAA
** * * ** * *
65280558 TAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACA
1 TAATTTTGTAAATC-AAGGGTATTTCGGTAA-TTTACAAATCAGGGGTATTTTGGTAATTTTACA
***
65280622 AACTAGGGGTATTTTGG
64 AACTAGGGGTATTTCAA
* * **
65280639 TAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTA
1 TAATTTTGTAAATCAAGGGTATTTCGGTAA-TTTACAAATC-AGGGGTATTTTGGTAATTTTACA
* * ***
65280703 AACCAAGGGTATTTTGG
64 AACTAGGGGTATTTCAA
** * * ** * *
65280720 TAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACA
1 TAATTTTGTAAATC-AAGGGTATTTCGGTAA-TTTACAAATCAGGGGTATTTTGGTAATTTTACA
***
65280784 AACTAGGGGTATTTTGG
64 AACTAGGGGTATTTCAA
* * **
65280801 TAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTA
1 TAATTTTGTAAATCAAGGGTATTTCGGTAA-TTTACAAATC-AGGGGTATTTTGGTAATTTTACA
* * ***
65280865 AACCAAGGGTATTTTGG
64 AACTAGGGGTATTTCAA
** * * ** * *
65280882 TAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACA
1 TAATTTTGTAAATC-AAGGGTATTTCGGTAA-TTTACAAATCAGGGGTATTTTGGTAATTTTACA
***
65280946 AACTAGGGGTATTTTGG
64 AACTAGGGGTATTTCAA
* * **
65280963 TAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTA
1 TAATTTTGTAAATCAAGGGTATTTCGGTAA-TTTACAAATC-AGGGGTATTTTGGTAATTTTACA
* * ***
65281027 AACCAAGGGTATTTTGG
64 AACTAGGGGTATTTCAA
** * * * * * * * * *
65281044 TAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGAGTATTTTAGTAATTTTACAA
1 TAATTTTGTAAATCAAGGGTATTTCGGT-AATTTACAAATCAGGGGTATTTTGGTAATTTTACAA
*
65281109 ACCAGGGGTATTT
65 ACTAGGGGTATTT
65281122 TGGTAATTTG
Statistics
Matches: 609, Mismatches: 99, Indels: 36
0.82 0.13 0.05
Matches are distributed among these distances:
80 8 0.01
81 586 0.96
82 15 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (80 bp):
TAATTTTGTAAATCAAGGGTATTTCGGTAATTTACAAATCAGGGGTATTTTGGTAATTTTACAAA
CTAGGGGTATTTCAA
Found at i:65280454 original size:54 final size:54
Alignment explanation
Indices: 65280436--65281137 Score: 1341
Period size: 54 Copynumber: 13.0 Consensus size: 54
65280426 TTTCACAAAT
65280436 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
65280490 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
65280544 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
65280598 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
65280652 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
65280706 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
65280760 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
65280814 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
65280868 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
65280922 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
65280976 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
* * *
65281030 CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
* * * *
65281084 CAAGAGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
65281138 TAAAGTATTC
Statistics
Matches: 640, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 640 1.00
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
Found at i:65283098 original size:6 final size:6
Alignment explanation
Indices: 65283080--65283167 Score: 83
Period size: 6 Copynumber: 14.3 Consensus size: 6
65283070 AAGAAACATT
*
65283080 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAGA ATCAGGA GA-CAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-GA -ATCAGA ATCAGA
* *
65283129 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
65283168 GTGAATACAA
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.79
7 8 0.12
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:65283127 original size:31 final size:31
Alignment explanation
Indices: 65283089--65283167 Score: 115
Period size: 31 Copynumber: 2.5 Consensus size: 31
65283079 TATCAGAACT
*
65283089 AGAATCAGAATCAGAATTAGAATCAGG-AGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTA-AC
*
65283120 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
65283151 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
65283168 GTGAATACAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
31 43 0.98
32 1 0.02
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:65283708 original size:27 final size:27
Alignment explanation
Indices: 65283678--65283922 Score: 303
Period size: 27 Copynumber: 9.1 Consensus size: 27
65283668 AACATCCTAG
* * * *
65283678 GGGTAAAATAATAATTTTATAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
65283705 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
65283732 GGGTAAAATAGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
65283759 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
65283786 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
** *
65283813 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
65283840 GGGTAAAATAATAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
65283867 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
65283894 GGGTAAATCGGTAATTCTATAAATC-A
1 GGGTAAAACAGTAATTTTGTAAATCGA
65283920 GGG
1 GGG
65283923 GTACTTTGGT
Statistics
Matches: 192, Mismatches: 26, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
26 4 0.02
27 188 0.98
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:65283761 original size:54 final size:54
Alignment explanation
Indices: 65283678--65283922 Score: 359
Period size: 54 Copynumber: 4.6 Consensus size: 54
65283668 AACATCCTAG
* * * *
65283678 GGGTAAAATAATAATTTTATAAATTGAGGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
65283732 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * *
65283786 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* * *
65283840 GGGTAAAATAATAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
* *
65283894 GGGT-AAATCGGTAATTCTATAAATC-AGGG
1 GGGTAAAAT-AGTAATTTTATAAATCGAGGG
65283923 GTACTTTGGT
Statistics
Matches: 175, Mismatches: 15, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
53 8 0.05
54 167 0.95
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (54 bp):
GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
Found at i:65283925 original size:81 final size:81
Alignment explanation
Indices: 65283678--65283922 Score: 377
Period size: 81 Copynumber: 3.0 Consensus size: 81
65283668 AACATCCTAG
* * *
65283678 GGGTAAAATAATAATTTTATAAATTGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAG
1 GGGTAAAATAATAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGG
*
65283743 TAATTTTATAAATCGA
66 TAATTCTATAAATCGA
*** *
65283759 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGG
1 GGGTAAAATAATAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGG
*
65283824 TAATTCTGTAAATCGA
66 TAATTCTATAAATCGA
*
65283840 GGGTAAAATAATAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGT-AAATCG
1 GGGTAAAATAATAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAAT-G
65283904 GTAATTCTATAAATC-A
65 GTAATTCTATAAATCGA
65283920 GGG
1 GGG
65283923 GTACTTTGGT
Statistics
Matches: 148, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
80 8 0.05
81 140 0.95
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (81 bp):
GGGTAAAATAATAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGG
TAATTCTATAAATCGA
Found at i:65284005 original size:27 final size:27
Alignment explanation
Indices: 65283875--65284153 Score: 167
Period size: 27 Copynumber: 10.3 Consensus size: 27
65283865 GAGGGTAAAA
** **
65283875 CGGTAATTTTGTAAATC-GAGGGTAAAT
1 CGGTAATTTTACAAATCAG-GGGTATTT
* *
65283902 CGGTAATTCTATAAATCAGGGGTACTTT
1 CGGTAATTTTACAAATCAGGGGTA-TTT
* *
65283930 -GGTAATTTTACAAGTC-GAGCGTATTT
1 CGGTAATTTTACAAATCAG-GGGTATTT
** **
65283956 CAATAATTTTACAGGTC-GAGGGTATTT
1 CGGTAATTTTACAAATCAG-GGGTATTT
* *
65283983 CAGTAATTTCACAAATCAGGGGTATTT
1 CGGTAATTTTACAAATCAGGGGTATTT
*
65284010 TGGTAATTTTACAAA-CTAGGGGTATTT
1 CGGTAATTTTACAAATC-AGGGGTATTT
* ** *
65284037 TGGTAATTTTGTAAA-CTAAGGGTATTT
1 CGGTAATTTTACAAATC-AGGGGTATTT
* * *
65284064 TGGTAATTTTACAAACCATGGGTATTT
1 CGGTAATTTTACAAATCAGGGGTATTT
* * * * *
65284091 TGGTGATTTTATAAA-CGAAGAGTATTT
1 CGGTAATTTTACAAATC-AGGGGTATTT
** *
65284118 TAGTAATTTTACAAACCAGGGGTATTT
1 CGGTAATTTTACAAATCAGGGGTATTT
*
65284145 TGGTAATTT
1 CGGTAATTT
65284154 GGTAAACTAA
Statistics
Matches: 208, Mismatches: 35, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
26 6 0.03
27 197 0.95
28 5 0.02
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
CGGTAATTTTACAAATCAGGGGTATTT
Found at i:65284141 original size:81 final size:81
Alignment explanation
Indices: 65283918--65284153 Score: 240
Period size: 81 Copynumber: 2.9 Consensus size: 81
65283908 TTCTATAAAT
* * * * * *** *
65283918 CAGGGGTACTTTGGTAATTTTACAAGTCG-AGCGTATTTCAATAATTTTACAGGTCGAGGGTATT
1 CAGGGGTATTTTGGTAATTTTACAA-ACGAAGAGTATTTTAGTAATTTTACAAACCAAGGGTATT
** *
65283982 TCAGTAATTTCACAAAT
65 TTGGTAATTTCACAAAC
* * * * ** *
65283999 CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACGAAGAGTATTTTAGTAATTTTACAAACCAAGGGTATTT
*
65284064 TGGTAATTTTACAAAC
66 TGGTAATTTCACAAAC
* * * *
65284080 CATGGGTATTTTGGTGATTTTATAAACGAAGAGTATTTTAGTAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACGAAGAGTATTTTAGTAATTTTACAAACCAAGGGTATTT
65284145 TGGTAATTT
66 TGGTAATTT
65284154 GGTAAACTAA
Statistics
Matches: 124, Mismatches: 30, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
80 1 0.01
81 123 0.99
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (81 bp):
CAGGGGTATTTTGGTAATTTTACAAACGAAGAGTATTTTAGTAATTTTACAAACCAAGGGTATTT
TGGTAATTTCACAAAC
Found at i:65284160 original size:27 final size:27
Alignment explanation
Indices: 65283975--65284153 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
65283965 TACAGGTCGA
** * *
65283975 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
65284002 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
65284029 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
65284056 GGGTATTTTGGTAATTTTACAAACCAT
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
65284083 GGGTATTTTGGTGATTTTATAAACGAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
65284110 GAGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
65284137 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
65284154 GGTAAACTAA
Statistics
Matches: 128, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:65284160 original size:54 final size:54
Alignment explanation
Indices: 65284004--65284169 Score: 253
Period size: 54 Copynumber: 3.1 Consensus size: 54
65283994 CAAATCAGGG
* *
65284004 GTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACTAAGG
1 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGA
* * * *
65284058 GTATTTTGGTAATTTTACAAACCATGGGTATTTTGGTGATTTTATAAACGAAGA
1 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGA
* *
65284112 GTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGGTAAACTAA-A
1 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGA
65284165 GTATT
1 GTATT
65284170 CTAAACAGGG
Statistics
Matches: 100, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
53 6 0.06
54 94 0.94
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGA
Found at i:65286439 original size:47 final size:47
Alignment explanation
Indices: 65286381--65286869 Score: 888
Period size: 47 Copynumber: 10.4 Consensus size: 47
65286371 CAGCCAAGAC
*
65286381 AGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65286428 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65286475 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65286522 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65286569 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65286616 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65286663 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65286710 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65286757 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
65286804 AGTGTATATATGTGACAGGGTCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
65286851 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
65286870 TCCCGAAGGG
Statistics
Matches: 430, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 430 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:65287038 original size:37 final size:37
Alignment explanation
Indices: 65286988--65287103 Score: 169
Period size: 37 Copynumber: 3.1 Consensus size: 37
65286978 CCGAGCTCTA
65286988 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
*
65287025 AAGACCCGATGACTACGTGTGGGAATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * * * *
65287062 AAGACCCGATAACTTCATGTGGAGATTATGTCTGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
65287099 AAGAC
1 AAGAC
65287104 TTCGTAATAA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:65292204 original size:27 final size:26
Alignment explanation
Indices: 65292156--65292207 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
65292146 GCGAGGCTGC
*
65292156 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
65292182 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
65292208 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:65292892 original size:27 final size:26
Alignment explanation
Indices: 65292846--65292964 Score: 114
Period size: 27 Copynumber: 4.4 Consensus size: 26
65292836 GGGGCAAAAT
* * * *
65292846 GGTAATTTTACCCCACAAGGATATCTC
1 GGTAATTCTA-CCTACAAGGGTATTTC
* *
65292873 GGTGATTCTACCTTACAAGGGTATTTT
1 GGTAATTCTACC-TACAAGGGTATTTC
* *
65292900 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTA-CCTACAAGGGTATTTC
65292927 GGTAATTCTATCCTAC-AGAGGTATTTC
1 GGTAATTCTA-CCTACAAG-GGTATTTC
65292954 GGTAATTCTAC
1 GGTAATTCTAC
65292965 AACTTATCCA
Statistics
Matches: 78, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
26 5 0.06
27 71 0.91
28 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.37
Consensus pattern (26 bp):
GGTAATTCTACCTACAAGGGTATTTC
Found at i:65292918 original size:54 final size:54
Alignment explanation
Indices: 65292845--65292964 Score: 129
Period size: 54 Copynumber: 2.2 Consensus size: 54
65292835 AGGGGCAAAA
*
65292845 TGGTAATTT-TACCCCACAAGGATATCTCGGTGATTCTA-CCTTACA-AGGGTATTT
1 TGGT-ATTTCTACCCCACAAGGATATCTCGGTAATTCTATCC-TACAGA-GGTATTT
* * * *
65292899 TGGTATTTCTACCCTACAAGGGTATTTTGGTAATTCTATCCTACAGAGGTATTT
1 TGGTATTTCTACCCCACAAGGATATCTCGGTAATTCTATCCTACAGAGGTATTT
* *
65292953 CGGTAATTCTAC
1 TGGTATTTCTAC
65292965 AACTTATCCA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
53 4 0.07
54 49 0.88
55 3 0.05
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (54 bp):
TGGTATTTCTACCCCACAAGGATATCTCGGTAATTCTATCCTACAGAGGTATTT
Found at i:65296721 original size:27 final size:27
Alignment explanation
Indices: 65296690--65296760 Score: 70
Period size: 29 Copynumber: 2.6 Consensus size: 27
65296680 ACAAAAGAAT
65296690 TATTTTTATAATTTTTAATAACTTTTA
1 TATTTTTATAATTTTTAATAACTTTTA
* * * * *
65296717 TATTTTTTTAAAAATTATGATAATTTTTA
1 TA--TTTTTATAATTTTTAATAACTTTTA
*
65296746 TATTTTTATCATTTT
1 TATTTTTATAATTTT
65296761 ATATAATTTC
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
27 11 0.33
29 22 0.67
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.63
Consensus pattern (27 bp):
TATTTTTATAATTTTTAATAACTTTTA
Found at i:65296752 original size:8 final size:8
Alignment explanation
Indices: 65296739--65296848 Score: 80
Period size: 8 Copynumber: 12.9 Consensus size: 8
65296729 AATTATGATA
65296739 ATTTTTAT
1 ATTTTTAT
65296747 ATTTTTAT
1 ATTTTTAT
65296755 CATTTTATAT
1 -ATTTT-TAT
*
65296765 AATTTCATAT
1 -ATTT-TTAT
65296775 AATTTTT-T
1 -ATTTTTAT
65296783 ATATTTTAT
1 AT-TTTTAT
* *
65296792 ATATTTAA
1 ATTTTTAT
65296800 ATTTTTA-
1 ATTTTTAT
*
65296807 GTTTTTAT
1 ATTTTTAT
*
65296815 TTTTTTAT
1 ATTTTTAT
65296823 AATTTTTAT
1 -ATTTTTAT
65296832 AATATTTTAT
1 -AT-TTTTAT
65296842 ATTTTTA
1 ATTTTTA
65296849 ACATTTTTCT
Statistics
Matches: 85, Mismatches: 9, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
7 8 0.09
8 35 0.41
9 21 0.25
10 21 0.25
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (8 bp):
ATTTTTAT
Found at i:65296754 original size:20 final size:19
Alignment explanation
Indices: 65296731--65296848 Score: 70
Period size: 20 Copynumber: 6.2 Consensus size: 19
65296721 TTTTTAAAAA
65296731 TTATGATAATTTTTATATTT
1 TTAT-ATAATTTTTATATTT
* *
65296751 TTATCAT--TTTATATAATT
1 TTAT-ATAATTTTTATATTT
*
65296769 TCATATAATTTTTTATATTT
1 TTATATAA-TTTTTATATTT
*
65296789 TATATATTTAAATTTTTA-GTTT
1 T-TATA--T-AATTTTTATATTT
*
65296811 TTAT-T--TTTTTATAATT
1 TTATATAATTTTTATATTT
65296827 TT-TATAATATTTTATATTT
1 TTATATAAT-TTTTATATTT
65296846 TTA
1 TTA
65296849 ACATTTTTCT
Statistics
Matches: 74, Mismatches: 11, Indels: 26
0.67 0.10 0.23
Matches are distributed among these distances:
15 7 0.09
16 5 0.07
17 2 0.03
18 14 0.19
19 11 0.15
20 16 0.22
21 6 0.08
22 4 0.05
23 7 0.09
24 2 0.03
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (19 bp):
TTATATAATTTTTATATTT
Found at i:65296812 original size:23 final size:24
Alignment explanation
Indices: 65296742--65296845 Score: 81
Period size: 23 Copynumber: 4.1 Consensus size: 24
65296732 TATGATAATT
65296742 TTTAT-ATTTTTATCATTTTATATAA
1 TTTATAATTTTTAT-ATTTTATAT-A
65296767 TTTCATATAATTTTTTATATTTTATATA
1 -TT--TATAA-TTTTTATATTTTATATA
* *
65296795 TTTA-AATTTTTAGT-TTTTATTTT
1 TTTATAATTTTTA-TATTTTATATA
65296818 TTTATAATTTTTATAATATTT-TATA
1 TTTATAATTTTTAT-AT-TTTATATA
65296843 TTT
1 TTT
65296846 TTAACATTTT
Statistics
Matches: 65, Mismatches: 4, Indels: 19
0.74 0.05 0.22
Matches are distributed among these distances:
23 18 0.28
24 11 0.17
25 8 0.12
26 5 0.08
27 2 0.03
28 4 0.06
29 10 0.15
30 7 0.11
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (24 bp):
TTTATAATTTTTATATTTTATATA
Found at i:65296838 original size:11 final size:9
Alignment explanation
Indices: 65296691--65296848 Score: 100
Period size: 9 Copynumber: 17.8 Consensus size: 9
65296681 CAAAAGAATT
65296691 ATTTTTATA
1 ATTTTTATA
65296700 ATTTTTAATA
1 ATTTTT-ATA
*
65296710 ACTTTTATA
1 ATTTTTATA
* *
65296719 TTTTTTTAAAA
1 -ATTTTT-ATA
* *
65296730 ATTATGATA
1 ATTTTTATA
65296739 ATTTTTAT-
1 ATTTTTATA
*
65296747 ATTTTTATC
1 ATTTTTATA
65296756 ATTTTATATA
1 ATTTT-TATA
*
65296766 ATTTCATATA
1 ATTT-TTATA
65296776 ATTTTT-T-
1 ATTTTTATA
65296783 ATATTTTAT-
1 AT-TTTTATA
*
65296792 ATATTTA-A
1 ATTTTTATA
65296800 A-TTTT-TA
1 ATTTTTATA
*
65296807 GTTTTTAT-
1 ATTTTTATA
*
65296815 TTTTTTATA
1 ATTTTTATA
65296824 ATTTTTATA
1 ATTTTTATA
65296833 ATATTTTAT-
1 AT-TTTTATA
65296842 ATTTTTA
1 ATTTTTA
65296849 ACATTTTTCT
Statistics
Matches: 117, Mismatches: 18, Indels: 29
0.71 0.11 0.18
Matches are distributed among these distances:
7 6 0.05
8 34 0.29
9 39 0.33
10 36 0.31
11 2 0.02
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (9 bp):
ATTTTTATA
Found at i:65296844 original size:29 final size:27
Alignment explanation
Indices: 65296741--65296847 Score: 67
Period size: 28 Copynumber: 3.7 Consensus size: 27
65296731 TTATGATAAT
*
65296741 TTTTATATTTTTATCA-TTTTATATAAT
1 TTTTATATTTTTAT-ATTTTTTTATAAT
* * *
65296768 TTCATATAATTTTTTATATTTTATATATTTAAA
1 TT-TTAT-A-TTTTTATATTTT-T-T-TATAAT
*
65296801 TTTT-TAGTTTT-TATTTTTTTATAAT
1 TTTTATATTTTTATATTTTTTTATAAT
65296826 TTTTATAATATTTTATATTTTT
1 TTTTAT-AT-TTTTATATTTTT
65296848 AACATTTTTC
Statistics
Matches: 60, Mismatches: 9, Indels: 20
0.67 0.10 0.22
Matches are distributed among these distances:
25 8 0.13
26 2 0.03
27 4 0.07
28 13 0.22
29 13 0.22
30 11 0.18
31 2 0.03
32 1 0.02
33 6 0.10
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (27 bp):
TTTTATATTTTTATATTTTTTTATAAT
Found at i:65296855 original size:38 final size:37
Alignment explanation
Indices: 65296813--65296914 Score: 98
Period size: 38 Copynumber: 2.7 Consensus size: 37
65296803 TTTAGTTTTT
65296813 ATTTTTTTATAATTTTTATAATATTTTATATTTTT-AAC
1 ATTTTTTTATAATTTTTATAA-ATTTTA-ATTTTTCAAC
* * * * * *
65296851 ATTTTTCTATTATTTTTTTCAATTTTAATTTTTCTAT
1 ATTTTTTTATAATTTTTATAAATTTTAATTTTTCAAC
*
65296888 AGTTTTCTTTATAAATTTTATAAATTT
1 A-TTTT-TTTATAATTTTTATAAATTT
65296915 CTAAATTTGT
Statistics
Matches: 50, Mismatches: 11, Indels: 5
0.76 0.17 0.08
Matches are distributed among these distances:
36 6 0.12
37 8 0.16
38 21 0.42
39 15 0.30
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.66
Consensus pattern (37 bp):
ATTTTTTTATAATTTTTATAAATTTTAATTTTTCAAC
Found at i:65297634 original size:16 final size:17
Alignment explanation
Indices: 65297603--65297635 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
65297593 TAATATTTTA
65297603 AAAATATTAATTTAATAT
1 AAAATATT-ATTTAATAT
65297621 AAAATATT-TTTAATA
1 AAAATATTATTTAATA
65297636 CTATAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AAAATATTATTTAATAT
Found at i:65297761 original size:17 final size:17
Alignment explanation
Indices: 65297741--65297806 Score: 62
Period size: 17 Copynumber: 3.8 Consensus size: 17
65297731 TACTTTAATA
*
65297741 TAATATATAACTATTAC
1 TAATATATAAATATTAC
* *
65297758 TAATACATAAAATAATA-
1 TAATATAT-AAATATTAC
*
65297775 TAATATATAAGTATTAC
1 TAATATATAAATATTAC
*
65297792 TAAAATATAATATAT
1 TAATATATAA-ATAT
65297807 AATTATTATT
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
16 6 0.16
17 23 0.61
18 9 0.24
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.38
Consensus pattern (17 bp):
TAATATATAAATATTAC
Found at i:65297779 original size:34 final size:33
Alignment explanation
Indices: 65297736--65297829 Score: 108
Period size: 34 Copynumber: 3.0 Consensus size: 33
65297726 TACTATACTT
65297736 TAATATAATATATAACTATTACTAATACATAAAA
1 TAATATAATATATAACTATTACTAATA-ATAAAA
* *
65297770 TAATATAATATATAAGTATTACTAA-AATATAA
1 TAATATAATATATAACTATTACTAATAATAAAA
* *
65297802 T-ATATAAT-TATTATTATTAC-AAT-ATAAA
1 TAATATAATATATAACTATTACTAATAATAAA
65297830 TTATAACAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
29 6 0.11
30 10 0.19
31 7 0.13
32 6 0.11
33 1 0.02
34 24 0.44
ACGTcount: A:0.54, C:0.05, G:0.01, T:0.39
Consensus pattern (33 bp):
TAATATAATATATAACTATTACTAATAATAAAA
Found at i:65299367 original size:70 final size:70
Alignment explanation
Indices: 65299269--65299415 Score: 242
Period size: 70 Copynumber: 2.1 Consensus size: 70
65299259 ATATAAAATA
*
65299269 TATATTATTTATATATATATATTCATTCATATTTGCCACTTTCAACGAATTCTTATATAGCCATG
1 TATATTATTTATATATATATATTCATTCATATTTGCCACTTTCAACGAATGCTTATATAGCCATG
65299334 TTATC
66 TTATC
* * * *
65299339 TATATTATTTATATATATATATTTATTCATATTTGTCACTTTCACCGAATGCTTATATATCCATG
1 TATATTATTTATATATATATATTCATTCATATTTGCCACTTTCAACGAATGCTTATATAGCCATG
65299404 TTATC
66 TTATC
65299409 -ATATTAT
1 TATATTAT
65299416 CAATTAACTT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
69 7 0.10
70 65 0.90
ACGTcount: A:0.31, C:0.14, G:0.05, T:0.49
Consensus pattern (70 bp):
TATATTATTTATATATATATATTCATTCATATTTGCCACTTTCAACGAATGCTTATATAGCCATG
TTATC
Found at i:65308863 original size:13 final size:14
Alignment explanation
Indices: 65308845--65308877 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
65308835 ATTTTATATT
65308845 ATATTAGTTTA-TA
1 ATATTAGTTTACTA
65308858 ATATTAGTTTACTA
1 ATATTAGTTTACTA
65308872 A-ATTAG
1 ATATTAG
65308878 CCTTAATGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 16 0.84
14 3 0.16
ACGTcount: A:0.39, C:0.03, G:0.09, T:0.48
Consensus pattern (14 bp):
ATATTAGTTTACTA
Found at i:65310503 original size:32 final size:33
Alignment explanation
Indices: 65310449--65310515 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 33
65310439 TATATTGTTC
*
65310449 ACTAGTGGATACATACACATTTGGCGAATACTT
1 ACTAGTGGATACATACACATTTGGCAAATACTT
65310482 ACTAGTGGATAC-TACACATTTGGCAAATACTT
1 ACTAGTGGATACATACACATTTGGCAAATACTT
65310514 AC
1 AC
65310516 GCAAATCTGA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 21 0.64
33 12 0.36
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (33 bp):
ACTAGTGGATACATACACATTTGGCAAATACTT
Found at i:65313112 original size:46 final size:47
Alignment explanation
Indices: 65312933--65313152 Score: 166
Period size: 46 Copynumber: 4.7 Consensus size: 47
65312923 GTAAGATGCA
* * * * ** *
65312933 GATGCCGTGTCCCAGACACGGTCTTACACTGGCTTATATCTCAA-GTC
1 GATGCCATGTCCCAGACA-TGTCTTACACTAGCCTACGTCTCAAGGCC
* * * * * *
65312980 GAAGCCATGTCCTAGACATGGTCTTACAC-AGACTATCATCTCGTA-GTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCCTA-CGTCTC-AAGGCC
* * * *
65313028 GA--CACATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAGGCC
1 GATGC-CATGTCCCAGACATGTCTTACACTAGCCTACGTCTCAAGGCC
*
65313074 GATG-CATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTAGC-CTACGTCTCAAGGCC
65313120 GATGCCATGTCCCAGACATGGTCTTACACTAGC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGC
65313153 TCTCACAAAT
Statistics
Matches: 140, Mismatches: 22, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
45 1 0.01
46 61 0.44
47 59 0.42
48 19 0.14
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCCTACGTCTCAAGGCC
Found at i:65314662 original size:30 final size:30
Alignment explanation
Indices: 65314626--65314686 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
65314616 CTCTTCGATT
65314626 TTTAGATTGTACATGAAACCAAGATAGTTA
1 TTTAGATTGTACATGAAACCAAGATAGTTA
65314656 TTTAGATTGTACATGAAACCAAGATAGTTA
1 TTTAGATTGTACATGAAACCAAGATAGTTA
65314686 T
1 T
65314687 CTCTCCCCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.34
Consensus pattern (30 bp):
TTTAGATTGTACATGAAACCAAGATAGTTA
Found at i:65320208 original size:41 final size:42
Alignment explanation
Indices: 65320139--65320217 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 42
65320129 TAGGAATCTG
* * *
65320139 TGATTACGTGTAAGACCATGTCTGGGACATTGGTATCGTATT
1 TGATTACGTGTAAGACCATATCTGGGACAGTGGCATCGTATT
* *
65320181 TGATT-CGTGTAAGACCCTATCTTGGACAGTGGCATCG
1 TGATTACGTGTAAGACCATATCTGGGACAGTGGCATCG
65320218 ATATGAGATA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
41 27 0.84
42 5 0.16
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.33
Consensus pattern (42 bp):
TGATTACGTGTAAGACCATATCTGGGACAGTGGCATCGTATT
Found at i:65324573 original size:47 final size:47
Alignment explanation
Indices: 65324522--65324626 Score: 183
Period size: 47 Copynumber: 2.2 Consensus size: 47
65324512 TAGTATTAAT
* *
65324522 TATGTGATAAGGCTGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
65324569 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
65324616 AATGTGATAAG
1 TATGTGATAAG
65324627 TCTCGAAGGG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.29
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:65325201 original size:41 final size:41
Alignment explanation
Indices: 65325156--65325236 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
65325146 AATATGGAGG
*
65325156 TGATTATGAATAAGTGGCTGGGATTATTGAAAGTTGTAAAA
1 TGATTATGAATAAGTGGATGGGATTATTGAAAGTTGTAAAA
65325197 TGATTATGAATAAGTGGATGGGATTATTGAAAGTTGTAAA
1 TGATTATGAATAAGTGGATGGGATTATTGAAAGTTGTAAA
65325237 TTTGGTGAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.37, C:0.01, G:0.27, T:0.35
Consensus pattern (41 bp):
TGATTATGAATAAGTGGATGGGATTATTGAAAGTTGTAAAA
Found at i:65326710 original size:38 final size:38
Alignment explanation
Indices: 65326608--65326712 Score: 115
Period size: 38 Copynumber: 2.8 Consensus size: 38
65326598 AATCCGAGTT
* * * *
65326608 TAAAGACCCGCTGACTATATGTAGAGATTATGTCCGGG
1 TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
* *
65326646 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGA
1 TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
*
65326684 TTAAGACCC-ACTGGCT-TCATATAGAGATT
1 TAAAGACCCGA-TGGCTAT-ATATAGAGATT
65326713 TCATCCGAGC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
37 2 0.04
38 54 0.96
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (38 bp):
TAAAGACCCGATGGCTATATATAGAGATTATGTCCGGA
Found at i:65326800 original size:40 final size:40
Alignment explanation
Indices: 65326740--65327015 Score: 453
Period size: 40 Copynumber: 6.9 Consensus size: 40
65326730 CTCGACGATG
* **
65326740 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGTTGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
65326780 ATCCGGGCTAAATCCTGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
65326820 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCTGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
65326860 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
65326900 ATCCGAGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* * *
65326940 ATCCGGGCTAAATCCCGAAGGGTATTCATGCCGATGTTAT
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
65326980 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTG
65327016 ATGTGTATTC
Statistics
Matches: 218, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 218 1.00
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
Found at i:65330857 original size:47 final size:47
Alignment explanation
Indices: 65330806--65330910 Score: 183
Period size: 47 Copynumber: 2.2 Consensus size: 47
65330796 TAGTATTAAT
*
65330806 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
65330853 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
65330900 AATGTGATAAG
1 TATGTGATAAG
65330911 TCCCGAAGGG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:65335071 original size:196 final size:196
Alignment explanation
Indices: 65334737--65335721 Score: 1952
Period size: 196 Copynumber: 5.0 Consensus size: 196
65334727 ACTAGACATG
65334737 CTAAATCTTATTCTCATTTTATACCATCATAATGTAGTTACCAATTTGTCAATTAAACATCCATA
1 CTAAATCTTATTCTCATTTTATACCATCATAATGTAGTTACCAATTTGTCAATTAAACATCCATA
65334802 TCACAAACCAACTTCCTATACATGCCACTCACTTGATATTTCTAATATATGAATTAATTCTCCCA
66 TCACAAACCAACTTCCTATACATGCCACTCACTTGATATTTCTAATATATGAATTAATTCTCCCA
65334867 AAACTGATAGTTTGATAGTGTGAATTTACCTCTGACGATCTCGAACCTTGAGCCGACCTGCAAAT
131 AAACTGATAGTTTGATAGTGTGAATTTACCTCTGACGATCTCGAACCTTGAGCCGACCTGCAAAT
65334932 A
196 A
65334933 CTAAATCTTATTCTCATTTTATACCATCATAATGTAGTTACCAATTTGTCAATTAAACATCCATA
1 CTAAATCTTATTCTCATTTTATACCATCATAATGTAGTTACCAATTTGTCAATTAAACATCCATA
65334998 TCACAAACCAACTTCCTATACATGCCACTCACTTGATATTTCTAATATATGAATTAATTCTCCCA
66 TCACAAACCAACTTCCTATACATGCCACTCACTTGATATTTCTAATATATGAATTAATTCTCCCA
65335063 AAACTGATAGTTTGATAGTGTGAATTTACCTCTGACGATCTCGAACCTTGAGCCGACCTGCAAAT
131 AAACTGATAGTTTGATAGTGTGAATTTACCTCTGACGATCTCGAACCTTGAGCCGACCTGCAAAT
65335128 A
196 A
65335129 CTAAATCTTATTCTCATTTTATACCATCATAATGTAGTTACCAATTTGTCAATTAAACATCCATA
1 CTAAATCTTATTCTCATTTTATACCATCATAATGTAGTTACCAATTTGTCAATTAAACATCCATA
65335194 TCACAAACCAACTTCCTATACATGCCACTCACTTGATATTTCTAATATATGAATTAATTCTCCCA
66 TCACAAACCAACTTCCTATACATGCCACTCACTTGATATTTCTAATATATGAATTAATTCTCCCA
65335259 AAACTGATAGTTTGATAGTGTGAATTTACCTCTGACGATCTCGAACCTTGAGCCGACCTGCAAAT
131 AAACTGATAGTTTGATAGTGTGAATTTACCTCTGACGATCTCGAACCTTGAGCCGACCTGCAAAT
65335324 A
196 A
65335325 CTAAATCTTATTCTCATTTTATACCATCATAATGTAGTTACCAATTTGTCAATTAAACATCCATA
1 CTAAATCTTATTCTCATTTTATACCATCATAATGTAGTTACCAATTTGTCAATTAAACATCCATA
65335390 TCACAAACCAACTTCCTATACATGCCACTCACTTGATATTTCTAATATATGAATTAATTCTCCCA
66 TCACAAACCAACTTCCTATACATGCCACTCACTTGATATTTCTAATATATGAATTAATTCTCCCA
65335455 AAACTGATAGTTTGATAGTGTGAATTTACCTCTGACGATCTCGAACCTTGAGCCGACCTGCAAAT
131 AAACTGATAGTTTGATAGTGTGAATTTACCTCTGACGATCTCGAACCTTGAGCCGACCTGCAAAT
65335520 A
196 A
65335521 CTAAATCTTATTCTCATTTTATACCATCATAATGTAGTTACCAATTTGTCAATTAAACATCCATA
1 CTAAATCTTATTCTCATTTTATACCATCATAATGTAGTTACCAATTTGTCAATTAAACATCCATA
65335586 TCACAAACCAACTTCCTATACATGCCACTCACTTGATATTTCTAATATATGAATTAATTCTCCCA
66 TCACAAACCAACTTCCTATACATGCCACTCACTTGATATTTCTAATATATGAATTAATTCTCCCA
* *
65335651 AAACTGATAGTTTGATAGTGTGAATTTACCTCTAACGATCTCGAACCCTGAGCCGACCTGCAAAT
131 AAACTGATAGTTTGATAGTGTGAATTTACCTCTGACGATCTCGAACCTTGAGCCGACCTGCAAAT
65335716 A
196 A
65335717 CTAAA
1 CTAAA
65335722 GAAATGGAGA
Statistics
Matches: 787, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
196 787 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.34
Consensus pattern (196 bp):
CTAAATCTTATTCTCATTTTATACCATCATAATGTAGTTACCAATTTGTCAATTAAACATCCATA
TCACAAACCAACTTCCTATACATGCCACTCACTTGATATTTCTAATATATGAATTAATTCTCCCA
AAACTGATAGTTTGATAGTGTGAATTTACCTCTGACGATCTCGAACCTTGAGCCGACCTGCAAAT
A
Found at i:65336731 original size:49 final size:49
Alignment explanation
Indices: 65336578--65336746 Score: 257
Period size: 49 Copynumber: 3.4 Consensus size: 49
65336568 ATACTCAGTT
65336578 GCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTA
1 GCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTA
* * * ** *
65336627 GCTTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTA
1 GCCTGCACTTAGTACTACACATGCGACC-AATTATCCGATACACGTAGTA
* *
65336677 GCCTGCACTTAGTATTACACATGCGACCAATTATCCGGTACACGTAGTA
1 GCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTA
65336726 GCCTGCACTTAGTACTACACA
1 GCCTGCACTTAGTACTACACA
65336747 CGTGACCTCA
Statistics
Matches: 104, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 62 0.60
50 42 0.40
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
GCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTA
Found at i:65337030 original size:27 final size:27
Alignment explanation
Indices: 65337000--65337053 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
65336990 TCATACAACC
* *
65337000 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
65337027 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
65337054 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:65340352 original size:40 final size:40
Alignment explanation
Indices: 65340306--65340406 Score: 157
Period size: 40 Copynumber: 2.5 Consensus size: 40
65340296 TCTCGCATAT
* *
65340306 TAAGTGCCATATATAGCTGAAGCTATCCCAAATCGCACAC
1 TAAGTGCCATATATAGCCGAAGCTATCCCAAACCGCACAC
* *
65340346 TAAGTGCCATATATAGCCGAAGCTATCTCGAACCGCACAC
1 TAAGTGCCATATATAGCCGAAGCTATCCCAAACCGCACAC
*
65340386 TAAGTGCCATATATAGTCGAA
1 TAAGTGCCATATATAGCCGAA
65340407 TTGTTGTCAA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.23
Consensus pattern (40 bp):
TAAGTGCCATATATAGCCGAAGCTATCCCAAACCGCACAC
Found at i:65340876 original size:21 final size:20
Alignment explanation
Indices: 65340852--65340890 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
65340842 AAACTTGTAT
65340852 ATCTATCAACAAACATTCATA
1 ATCTATCAACAAAC-TTCATA
*
65340873 ATCTATCAAGAAACTTCA
1 ATCTATCAACAAACTTCA
65340891 AAATACACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.23, G:0.03, T:0.28
Consensus pattern (20 bp):
ATCTATCAACAAACTTCATA
Found at i:65349727 original size:48 final size:48
Alignment explanation
Indices: 65349656--65350238 Score: 952
Period size: 48 Copynumber: 12.0 Consensus size: 48
65349646 CAAGATAAAT
* *
65349656 ATATGTATATGTGGTAAAGCCGAATCGATAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
65349704 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
65349754 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
65349804 ATATATATATGTGGTAAAGCCGAATGGTTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
65349852 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
65349900 ATATGTATATGTGGTGAAGCCGAATGGTTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
65349948 ATATGTATATGTGGTGAAGTCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
65349996 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
65350044 ATATGTAT-TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
65350091 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
*
65350141 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
65350189 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
65350237 AT
1 AT
65350239 GTGTGTACAT
Statistics
Matches: 506, Mismatches: 24, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
47 47 0.09
48 317 0.63
49 8 0.02
50 134 0.26
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:65350524 original size:37 final size:37
Alignment explanation
Indices: 65350379--65350523 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
65350369 GGAAATATAT
65350379 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
65350416 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
65350453 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
65350490 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
65350524 TCATCTGAGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:65364680 original size:24 final size:24
Alignment explanation
Indices: 65364648--65364697 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
65364638 TGGGAGAAAA
65364648 GTATCTATCTGTGGAGATACTTAG
1 GTATCTATCTGTGGAGATACTTAG
65364672 GTATCTATCTGTGGAGATACTTAG
1 GTATCTATCTGTGGAGATACTTAG
65364696 GT
1 GT
65364698 TCCTGGAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.38
Consensus pattern (24 bp):
GTATCTATCTGTGGAGATACTTAG
Found at i:65369646 original size:15 final size:14
Alignment explanation
Indices: 65369626--65369661 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
65369616 AGCATGTTTA
65369626 ATCTGATAATTCTGT
1 ATCTGAT-ATTCTGT
*
65369641 ATCTGATTTTCTGT
1 ATCTGATATTCTGT
65369655 ATCTGAT
1 ATCTGAT
65369662 TTGGGATGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.22, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
ATCTGATATTCTGT
Found at i:65369654 original size:14 final size:14
Alignment explanation
Indices: 65369635--65369663 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
65369625 AATCTGATAA
65369635 TTCTGTATCTGATT
1 TTCTGTATCTGATT
65369649 TTCTGTATCTGATT
1 TTCTGTATCTGATT
65369663 T
1 T
65369664 GGGATGGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.59
Consensus pattern (14 bp):
TTCTGTATCTGATT
Found at i:65372499 original size:40 final size:40
Alignment explanation
Indices: 65372451--65372816 Score: 608
Period size: 40 Copynumber: 9.2 Consensus size: 40
65372441 GGACTAAGAT
65372451 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
65372491 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
65372531 CCGAAGGCATTTGTGCTAGTTACTATATCTGGGCTAACTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
65372571 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
65372611 CCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
65372651 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
65372691 CCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
65372731 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
65372771 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
65372810 CCGAAGG
1 CCGAAGG
65372817 TACTTGGGTT
Statistics
Matches: 305, Mismatches: 21, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
39 15 0.05
40 290 0.95
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:65376750 original size:17 final size:17
Alignment explanation
Indices: 65376727--65376766 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
65376717 GAAGAGAGTG
65376727 AAAAAGAAAA-AGAAAA
1 AAAAAGAAAACAGAAAA
*
65376743 AGAAAAGAAAACTGAAAA
1 A-AAAAGAAAACAGAAAA
65376761 AAAAAG
1 AAAAAG
65376767 GAAAGCAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 14 0.67
18 6 0.29
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.03
Consensus pattern (17 bp):
AAAAAGAAAACAGAAAA
Found at i:65380315 original size:40 final size:39
Alignment explanation
Indices: 65380232--65380535 Score: 344
Period size: 40 Copynumber: 7.6 Consensus size: 39
65380222 TGAATGATGT
* * *
65380232 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTG--AGAGTTACTATAA
* * *
65380272 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGAGAGTTACTATA-A
* *
65380312 CCGGGCTAAGCCCGAAGGCATTGGTGAGAGTTACTATAA
1 CCGGGCTAAGTCCGAAGGCATTTGTGAGAGTTACTATAA
* *
65380351 CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGT-CCGAAGGCATTTGTGAGAGTTACTATAA
* *
65380391 CCGGGCTAAGTTTCGAAGGCATTTGTGAGAGTCACTATAA
1 CCGGGCTAAG-TCCGAAGGCATTTGTGAGAGTTACTATAA
* *
65380431 CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGT-CCGAAGGCATTTGTGAGAGTTACTATAA
* *
65380471 CCGGGCTAAGTTTCGAAGGCATTTGTGAGAGTCACTATAA
1 CCGGGCTAAG-TCCGAAGGCATTTGTGAGAGTTACTATAA
*
65380511 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGT-CCGAAGGCATTTG
65380536 AACGAGTAGC
Statistics
Matches: 227, Mismatches: 27, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
39 35 0.15
40 183 0.81
41 9 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGAGAGTTACTATAA
Found at i:65380477 original size:120 final size:119
Alignment explanation
Indices: 65380232--65380535 Score: 387
Period size: 120 Copynumber: 2.5 Consensus size: 119
65380222 TGAATGATGT
* * * * * *
65380232 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTATAACCGGGCTAAGTTCCGAAGGCATTT
* * *
65380296 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGAGAGTTACTATAA
65 GTGAGAGTCACTAATACCGGGCTAAGCCCGAAGGCATTGGTGAGAGTTACTATAA
* * *
65380351 CCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTTTCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAACCGGGCTAAGTTCCGAAGGCATTTG
* * *
65380416 TGAGAGTCACT-ATAACCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAA
66 TGAGAGTCACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGTGAGAGTTACTATAA
** * * *
65380471 CCGGGCTAAGTTTCGAAGGCATTTGTGAGAGTCACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAACCGGGCTAAGTTCCGAAGGCATTTG
65380536 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
118 2 0.01
119 67 0.42
120 91 0.57
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAACCGGGCTAAGTTCCGAAGGCATTTG
TGAGAGTCACTAATACCGGGCTAAGCCCGAAGGCATTGGTGAGAGTTACTATAA
Found at i:65380549 original size:80 final size:80
Alignment explanation
Indices: 65380284--65380535 Score: 436
Period size: 80 Copynumber: 3.2 Consensus size: 80
65380274 GGACTAAGAT
* ** * *
65380284 CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGAGAGTTACT
1 CCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTTTCGAAGGCATTTGTGAGAGTCACT
65380347 ATAACCGGGCTATGTC
65 ATAACCGGGCTATGTC
65380363 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTTTCGAAGGCATTTGTGAGAGTCACTA
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTTTCGAAGGCATTTGTGAGAGTCACTA
65380428 TAACCGGGCTATGTC
66 TAACCGGGCTATGTC
65380443 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTTTCGAAGGCATTTGTGAGAGTCACTA
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTTTCGAAGGCATTTGTGAGAGTCACTA
65380508 TAACCGGGCTATGTC
66 TAACCGGGCTATGTC
65380523 CCGAAGGCATTTG
1 CCGAAGGCATTTG
65380536 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
79 35 0.21
80 131 0.79
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTTTCGAAGGCATTTGTGAGAGTCACTA
TAACCGGGCTATGTC
Found at i:65388318 original size:40 final size:39
Alignment explanation
Indices: 65388287--65388496 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
65388277 GGACTAAGAT
* *
65388287 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
65388327 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
65388367 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
65388407 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
65388447 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
65388486 CCGAAGGCATT
1 CCGAAGGCATT
65388497 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:65388450 original size:120 final size:120
Alignment explanation
Indices: 65388234--65388496 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
65388224 TTGAATGCTG
* *
65388234 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
65388298 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
65388354 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
65388417 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
65388473 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
65388497 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:65388516 original size:79 final size:80
Alignment explanation
Indices: 65388235--65388531 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
65388225 TGAATGCTGT
* ** * * * **
65388235 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
65388298 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
65388315 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
65388379 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
65388395 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
65388459 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
65388474 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
65388532 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:65390810 original size:38 final size:40
Alignment explanation
Indices: 65390767--65390858 Score: 136
Period size: 38 Copynumber: 2.4 Consensus size: 40
65390757 AGTTTAAGTC
* *
65390767 TTTAATTATATCATAAAT-TGAACATCATTAATATGAG-T
1 TTTAATTATGTCATAAATCTGAACATCATTAATAAGAGTT
*
65390805 TTTAATTATGTCAT-AATCTGAACATCATTAGTAAGAGTT
1 TTTAATTATGTCATAAATCTGAACATCATTAATAAGAGTT
65390844 TTTAATTATGTCATA
1 TTTAATTATGTCATA
65390859 GTTTGGACAT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
37 3 0.06
38 30 0.62
39 15 0.31
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (40 bp):
TTTAATTATGTCATAAATCTGAACATCATTAATAAGAGTT
Found at i:65393536 original size:27 final size:27
Alignment explanation
Indices: 65393506--65393683 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
65393496 ATATTGAGTC
* * * *
65393506 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
65393533 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65393560 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
65393588 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
65393615 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
65393642 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65393669 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65393684 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:65393645 original size:82 final size:81
Alignment explanation
Indices: 65393527--65393682 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
65393517 TGCTATATAA
* *
65393527 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
65393592 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
65393609 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
65393673 CACTTAGTGC
65 CACTTAGTGC
65393683 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Done.