Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 192 of 290
Found at i:65793080 original size:138 final size:137
Alignment explanation
Indices: 65792831--65793106 Score: 308
Period size: 138 Copynumber: 2.0 Consensus size: 137
65792821 ATGTTATTGG
* * * * * *
65792831 GGTTACAGTGTTTCGGGTGTTGGTCCTGAACGTCCTACCCATGGCTGAGTTTTCGGCATGTGTTG
1 GGTTACAGTGTTTCGGGTGCTAGTCCTGAACGTCCTACCAATGGCTGAGTGTCCAGCATGTGTTG
* * * * * *
65792896 CGGTTACTTGACAGCTTGTGTGAGCAGCACCTTGTGGCTACGTTCTGACCGACAGCTTATGTGAG
66 CGGGTACTAGACAGCTTGTGTGAGCAGCA-CTTGTGGCTACATTCTGACCAACAACTTACGTGAG
*
65792961 TAGACCCA
130 CAGACCCA
* * *
65792969 GGTTACTA-TGTTTTGGGTGCTAGTCTTGAATGTCCTACCAATGGCTGAG-GTCCAGCAT-TAGT
1 GGTTAC-AGTGTTTCGGGTGCTAGTCCTGAACGTCCTACCAATGGCTGAGTGTCCAGCATGT-GT
* *
65793031 TGCGGGTACTAGACAGCTTGTGTGAGCGGCA-TTGTGTAGCTTACATTCTGACTAACAACTTACG
64 TGCGGGTACTAGACAGCTTGTGTGAGCAGCACTTGTG--GC-TACATTCTGACCAACAACTTACG
65793095 TGAGCAGACCCA
126 TGAGCAGACCCA
65793107 TTTTACAGCT
Statistics
Matches: 115, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
135 5 0.04
136 1 0.01
137 38 0.33
138 70 0.61
139 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (137 bp):
GGTTACAGTGTTTCGGGTGCTAGTCCTGAACGTCCTACCAATGGCTGAGTGTCCAGCATGTGTTG
CGGGTACTAGACAGCTTGTGTGAGCAGCACTTGTGGCTACATTCTGACCAACAACTTACGTGAGC
AGACCCA
Found at i:65801989 original size:36 final size:36
Alignment explanation
Indices: 65801938--65802009 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
65801928 GTCCTTAAAC
*
65801938 TCTAGGGAGGTTGTCGATTTGGGCATAGGGCTTTAA
1 TCTAGGGAGGCTGTCGATTTGGGCATAGGGCTTTAA
65801974 TCTAGGGAGGCTGTCGATTTGGGCATAGGGCTTTAA
1 TCTAGGGAGGCTGTCGATTTGGGCATAGGGCTTTAA
65802010 GGGTCTTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.19, C:0.12, G:0.36, T:0.32
Consensus pattern (36 bp):
TCTAGGGAGGCTGTCGATTTGGGCATAGGGCTTTAA
Found at i:65813251 original size:487 final size:487
Alignment explanation
Indices: 65812338--65813311 Score: 1930
Period size: 487 Copynumber: 2.0 Consensus size: 487
65812328 TTTGTAGTTA
65812338 TTTGATATGTGTACTGGTAATGTAGAGTATTGATATGGATTCTGAGGGTAAGCAAATTCTGCCAA
1 TTTGATATGTGTACTGGTAATGTAGAGTATTGATATGGATTCTGAGGGTAAGCAAATTCTGCCAA
*
65812403 CTTCGGGTAGTGGTAACTCGGAGCTTGGTATTGAGGCACTGGCTGAGTTAGTAAGGAAAGTGGTA
66 CTTCGGGTAGTGGCAACTCGGAGCTTGGTATTGAGGCACTGGCTGAGTTAGTAAGGAAAGTGGTA
65812468 GAGGAAGTATTGGATACCAAAATTAAGGAAATTAGGGAAACCCTCCAAGTATGGTGCTTGGAGTG
131 GAGGAAGTATTGGATACCAAAATTAAGGAAATTAGGGAAACCCTCCAAGTATGGTGCTTGGAGTG
65812533 TAAGAAAAGGAAGGATCCTAGTTCTTAGAGAATAGAGTTTCATTTTGTGAAACATGTTAAGACAT
196 TAAGAAAAGGAAGGATCCTAGTTCTTAGAGAATAGAGTTTCATTTTGTGAAACATGTTAAGACAT
65812598 GACCAAACTTTTCGACCTGCAAGGACTGCAACAGGCGTTATCCGGGTGAATGCTATGGGAAGACA
261 GACCAAACTTTTCGACCTGCAAGGACTGCAACAGGCGTTATCCGGGTGAATGCTATGGGAAGACA
65812663 GAAGCATGCTTTAGATGTGGGTCCAAGATGCATCGAGCTTAGGATTGCCAAGCATATTTTATTTA
326 GAAGCATGCTTTAGATGTGGGTCCAAGATGCATCGAGCTTAGGATTGCCAAGCATATTTTATTTA
65812728 AGTGTGTGTTACGAGTTGTATGCGTACTTGATAGATGTTTCTTTACTTTGGTAATTAGACGTTCT
391 AGTGTGTGTTACGAGTTGTATGCGTACTTGATAGATGTTTCTTTACTTTGGTAATTAGACGTTCT
*
65812793 GGTTCGTACTAAGAATTATTTTTAATTAGAGT
456 GGGTCGTACTAAGAATTATTTTTAATTAGAGT
65812825 TTTGATATGTGTACTGGTAATGTAGAGTATTGATATGGATTCTGAGGGTAAGCAAATTCTGCCAA
1 TTTGATATGTGTACTGGTAATGTAGAGTATTGATATGGATTCTGAGGGTAAGCAAATTCTGCCAA
65812890 CTTCGGGTAGTGGCAACTCGGAGCTTGGTATTGAGGCACTGGCTGAGTTAGTAAGGAAAGTGGTA
66 CTTCGGGTAGTGGCAACTCGGAGCTTGGTATTGAGGCACTGGCTGAGTTAGTAAGGAAAGTGGTA
65812955 GAGGAAGTATTGGATACCAAAATTAAGGAAATTAGGGAAACCCTCCAAGTATGGTGCTTGGAGTG
131 GAGGAAGTATTGGATACCAAAATTAAGGAAATTAGGGAAACCCTCCAAGTATGGTGCTTGGAGTG
65813020 TAAGAAAAGGAAGGATCCTAGTTCTTAGAGAATAGAGTTTCATTTTGTGAAACATGTTAAGACAT
196 TAAGAAAAGGAAGGATCCTAGTTCTTAGAGAATAGAGTTTCATTTTGTGAAACATGTTAAGACAT
65813085 GACCAAACTTTTCGACCTGCAAGGACTGCAACAGGCGTTATCCGGGTGAATGCTATGGGAAGACA
261 GACCAAACTTTTCGACCTGCAAGGACTGCAACAGGCGTTATCCGGGTGAATGCTATGGGAAGACA
65813150 GAAGCATGCTTTAGATGTGGGTCCAAGATGCATCGAGCTTAGGATTGCCAAGCATATTTTATTTA
326 GAAGCATGCTTTAGATGTGGGTCCAAGATGCATCGAGCTTAGGATTGCCAAGCATATTTTATTTA
65813215 AGTGTGTGTTACGAGTTGTATGCGTACTTGATAGATGTTTCTTTACTTTGGTAATTAGACGTTCT
391 AGTGTGTGTTACGAGTTGTATGCGTACTTGATAGATGTTTCTTTACTTTGGTAATTAGACGTTCT
65813280 GGGTCGTACTAAGAATTATTTTTAATTAGAGT
456 GGGTCGTACTAAGAATTATTTTTAATTAGAGT
65813312 GTGCAGCAGA
Statistics
Matches: 485, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
487 485 1.00
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (487 bp):
TTTGATATGTGTACTGGTAATGTAGAGTATTGATATGGATTCTGAGGGTAAGCAAATTCTGCCAA
CTTCGGGTAGTGGCAACTCGGAGCTTGGTATTGAGGCACTGGCTGAGTTAGTAAGGAAAGTGGTA
GAGGAAGTATTGGATACCAAAATTAAGGAAATTAGGGAAACCCTCCAAGTATGGTGCTTGGAGTG
TAAGAAAAGGAAGGATCCTAGTTCTTAGAGAATAGAGTTTCATTTTGTGAAACATGTTAAGACAT
GACCAAACTTTTCGACCTGCAAGGACTGCAACAGGCGTTATCCGGGTGAATGCTATGGGAAGACA
GAAGCATGCTTTAGATGTGGGTCCAAGATGCATCGAGCTTAGGATTGCCAAGCATATTTTATTTA
AGTGTGTGTTACGAGTTGTATGCGTACTTGATAGATGTTTCTTTACTTTGGTAATTAGACGTTCT
GGGTCGTACTAAGAATTATTTTTAATTAGAGT
Found at i:65814039 original size:15 final size:15
Alignment explanation
Indices: 65813994--65814042 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 15
65813984 TTGGTGCCGA
*
65813994 TTTC-TTCTTCCTCT
1 TTTCTTTCTTCCTAT
* *
65814008 ATT-TTTCCTCC-AT
1 TTTCTTTCTTCCTAT
65814021 TTTCTTTCTTCCTAT
1 TTTCTTTCTTCCTAT
65814036 TTTCTTT
1 TTTCTTT
65814043 TTCTTCTAGC
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
13 3 0.11
14 15 0.56
15 9 0.33
ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTCTTTCTTCCTAT
Found at i:65814709 original size:15 final size:15
Alignment explanation
Indices: 65814664--65814712 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 15
65814654 TTGGTGCCGA
*
65814664 TTTC-TTCTTCCTCT
1 TTTCTTTCTTCCTAT
* *
65814678 ATT-TTTCCTCC-AT
1 TTTCTTTCTTCCTAT
65814691 TTTCTTTCTTCCTAT
1 TTTCTTTCTTCCTAT
65814706 TTTCTTT
1 TTTCTTT
65814713 TTCTTCTAGC
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
13 3 0.11
14 15 0.56
15 9 0.33
ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTCTTTCTTCCTAT
Found at i:65815210 original size:670 final size:670
Alignment explanation
Indices: 65813930--65815271 Score: 2684
Period size: 670 Copynumber: 2.0 Consensus size: 670
65813920 AGCTTTCACT
65813930 GCCATTCATCTTTTCTAAGTTCTCACAAAAGCCGAAAACGCAAATTCCTTCTCCTTGGTGCCGAT
1 GCCATTCATCTTTTCTAAGTTCTCACAAAAGCCGAAAACGCAAATTCCTTCTCCTTGGTGCCGAT
65813995 TTCTTCTTCCTCTATTTTTCCTCCATTTTCTTTCTTCCTATTTTCTTTTTCTTCTAGCTGAAACC
66 TTCTTCTTCCTCTATTTTTCCTCCATTTTCTTTCTTCCTATTTTCTTTTTCTTCTAGCTGAAACC
65814060 TTCTGATCACCTTACTCACCTCCTCCGTCAATCCCATCCTCCACAAAACCTCTGTAGCCGATTGC
131 TTCTGATCACCTTACTCACCTCCTCCGTCAATCCCATCCTCCACAAAACCTCTGTAGCCGATTGC
65814125 CATAAAAGCCGAAATCTCGAAAACTCACTTCTTGTGCCGATTTCTCCAAGCGAAAATCCTTTACT
196 CATAAAAGCCGAAATCTCGAAAACTCACTTCTTGTGCCGATTTCTCCAAGCGAAAATCCTTTACT
65814190 TTTTTTTGTTCTTTCTGATCAACTTTCATCTTCTCTAAACCCTTAGTATCTGTCGGCAACATTAC
261 TTTTTTTGTTCTTTCTGATCAACTTTCATCTTCTCTAAACCCTTAGTATCTGTCGGCAACATTAC
65814255 TTCAAAGTTATAGCCTCAAATCGTCATCTTCTTCATCACTTAAAAAGCTAAAATACCATAGATTT
326 TTCAAAGTTATAGCCTCAAATCGTCATCTTCTTCATCACTTAAAAAGCTAAAATACCATAGATTT
65814320 AGGGACTCATAGCCGAAACTTCAGATCTCCTGGATTCGAGTTCTACTATCATTTAGAGGATAGAT
391 AGGGACTCATAGCCGAAACTTCAGATCTCCTGGATTCGAGTTCTACTATCATTTAGAGGATAGAT
65814385 CTGCATCAGATCTATGTAGAAATCAAAGAGGAATAAGTGGTAAGTGCTCATCACCTCAGATCAAG
456 CTGCATCAGATCTATGTAGAAATCAAAGAGGAATAAGTGGTAAGTGCTCATCACCTCAGATCAAG
65814450 TCTTATTTTAAAATTTAGAAAAGCCGAAGTCCTTAAAATCTAGGGAGGCTGTCGATTTGGGCATA
521 TCTTATTTTAAAATTTAGAAAAGCCGAAGTCCTTAAAATCTAGGGAGGCTGTCGATTTGGGCATA
65814515 GGGCTTTAAGGGTCTTTAACCTACGATTTCTTTTGGATATTAGTGTCTTCTAGAGGTTTGATTGA
586 GGGCTTTAAGGGTCTTTAACCTACGATTTCTTTTGGATATTAGTGTCTTCTAGAGGTTTGATTGA
65814580 AGGCTTGGATCTTTGGAACA
651 AGGCTTGGATCTTTGGAACA
65814600 GCCATTCATCTTTTCTAAGTTCTCACAAAAGCCGAAAACGCAAATTCCTTCTCCTTGGTGCCGAT
1 GCCATTCATCTTTTCTAAGTTCTCACAAAAGCCGAAAACGCAAATTCCTTCTCCTTGGTGCCGAT
65814665 TTCTTCTTCCTCTATTTTTCCTCCATTTTCTTTCTTCCTATTTTCTTTTTCTTCTAGCTGAAACC
66 TTCTTCTTCCTCTATTTTTCCTCCATTTTCTTTCTTCCTATTTTCTTTTTCTTCTAGCTGAAACC
65814730 TTCTGATCACCTTACTCACCTCCTCCGTCAATCCCATCCTCCACAAAACCTCTGTAGCCGATTGC
131 TTCTGATCACCTTACTCACCTCCTCCGTCAATCCCATCCTCCACAAAACCTCTGTAGCCGATTGC
65814795 CATAAAAGCCGAAATCTCGAAAACTCACTTCTTGTGCCGATTTCTCCAAGCGAAAATCCTTTACT
196 CATAAAAGCCGAAATCTCGAAAACTCACTTCTTGTGCCGATTTCTCCAAGCGAAAATCCTTTACT
65814860 TTTTTTTGTTCTTTCTGATCAACTTTCATCTTCTCTAAACCCTTAGTATCTGTCGGCAACATTAC
261 TTTTTTTGTTCTTTCTGATCAACTTTCATCTTCTCTAAACCCTTAGTATCTGTCGGCAACATTAC
65814925 TTCAAAGTTATAGCCTCAAATCGTCATCTTCTTCATCACTTAAAAAGCTAAAATACCATAGATTT
326 TTCAAAGTTATAGCCTCAAATCGTCATCTTCTTCATCACTTAAAAAGCTAAAATACCATAGATTT
65814990 AGGGACTCATAGCCGAAACTTCAGATCTCCTGGATTCGAGTTCTACTATCATTTAGAGGATAGAT
391 AGGGACTCATAGCCGAAACTTCAGATCTCCTGGATTCGAGTTCTACTATCATTTAGAGGATAGAT
65815055 CTGCATCAGATCTATGTAGAAATCAAAGAGGAATAAGTGGTAAGTGCTCATCACCTCAGATCAAG
456 CTGCATCAGATCTATGTAGAAATCAAAGAGGAATAAGTGGTAAGTGCTCATCACCTCAGATCAAG
65815120 TCTTATTTTAAAATTTAGAAAAGCCGAAGTCCTTAAAATCTAGGGAGGCTGTCGATTTGGGCATA
521 TCTTATTTTAAAATTTAGAAAAGCCGAAGTCCTTAAAATCTAGGGAGGCTGTCGATTTGGGCATA
65815185 GGGCTTTAAGGGTCTTTAACCTACGATTTCTTTTGGATATTAGTGTCTTCTAGAGGTTTGATTGA
586 GGGCTTTAAGGGTCTTTAACCTACGATTTCTTTTGGATATTAGTGTCTTCTAGAGGTTTGATTGA
65815250 AGGCTTGGATCTTTGGAACA
651 AGGCTTGGATCTTTGGAACA
65815270 GC
1 GC
65815272 TAGACTTAGA
Statistics
Matches: 672, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
670 672 1.00
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.35
Consensus pattern (670 bp):
GCCATTCATCTTTTCTAAGTTCTCACAAAAGCCGAAAACGCAAATTCCTTCTCCTTGGTGCCGAT
TTCTTCTTCCTCTATTTTTCCTCCATTTTCTTTCTTCCTATTTTCTTTTTCTTCTAGCTGAAACC
TTCTGATCACCTTACTCACCTCCTCCGTCAATCCCATCCTCCACAAAACCTCTGTAGCCGATTGC
CATAAAAGCCGAAATCTCGAAAACTCACTTCTTGTGCCGATTTCTCCAAGCGAAAATCCTTTACT
TTTTTTTGTTCTTTCTGATCAACTTTCATCTTCTCTAAACCCTTAGTATCTGTCGGCAACATTAC
TTCAAAGTTATAGCCTCAAATCGTCATCTTCTTCATCACTTAAAAAGCTAAAATACCATAGATTT
AGGGACTCATAGCCGAAACTTCAGATCTCCTGGATTCGAGTTCTACTATCATTTAGAGGATAGAT
CTGCATCAGATCTATGTAGAAATCAAAGAGGAATAAGTGGTAAGTGCTCATCACCTCAGATCAAG
TCTTATTTTAAAATTTAGAAAAGCCGAAGTCCTTAAAATCTAGGGAGGCTGTCGATTTGGGCATA
GGGCTTTAAGGGTCTTTAACCTACGATTTCTTTTGGATATTAGTGTCTTCTAGAGGTTTGATTGA
AGGCTTGGATCTTTGGAACA
Found at i:65828454 original size:38 final size:38
Alignment explanation
Indices: 65828393--65828496 Score: 118
Period size: 38 Copynumber: 2.7 Consensus size: 38
65828383 CAAAGACCCG
** * *
65828393 CAGGCTTCGTGCTGGTAAAATATCTGGGTTAAATCCCA
1 CAGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCA
* **
65828431 CAGGCTTCGTGCTAGTATTATATCCGGGATAAATCCTG
1 CAGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCA
* * *
65828469 CAGGCCTAGTGCTGGTATTATATTCGGG
1 CAGGCTTCGTGCTGGTATTATATCCGGG
65828497 CCTTCGTGCC
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (38 bp):
CAGGCTTCGTGCTGGTATTATATCCGGGATAAATCCCA
Found at i:65828699 original size:43 final size:43
Alignment explanation
Indices: 65828489--65828684 Score: 356
Period size: 43 Copynumber: 4.6 Consensus size: 43
65828479 GCTGGTATTA
65828489 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
65828532 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
65828575 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
65828618 TATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
65828661 TATTCTGGCCTTCGTGCCTAGCAG
1 TATTCGGGCCTTCGTGCCTAGCAG
65828685 TCGTAATGCC
Statistics
Matches: 147, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 147 1.00
ACGTcount: A:0.11, C:0.26, G:0.33, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:65838806 original size:39 final size:40
Alignment explanation
Indices: 65838711--65838972 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
65838701 TTGAATGATG
*
65838711 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
65838749 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
65838790 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
65838829 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
65838868 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
65838907 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
65838946 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
65838973 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:65840864 original size:42 final size:42
Alignment explanation
Indices: 65840817--65840920 Score: 172
Period size: 42 Copynumber: 2.5 Consensus size: 42
65840807 TATCGGGATG
* * *
65840817 TGAGATTCATGTAAGACCATGACTGGGACATTTGCATCGATA
1 TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
*
65840859 TGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA
1 TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
65840901 TGAGATTCGTGTAAGACCAT
1 TGAGATTCGTGTAAGACCAT
65840921 AGCTAAGCTA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTCGTGTAAGACCATGACTAGGACATTGGCATCGATA
Found at i:65840934 original size:42 final size:42
Alignment explanation
Indices: 65840817--65840942 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
65840807 TATCGGGATG
* * ** *
65840817 TGAGATTCATGTAAGACCATGACTGGGACATTTGCATCGATA
1 TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
*
65840859 TGAGATTCGTGTAAGACCATGTCTAGGACATTGGCATCGATA
1 TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
65840901 TGAGATTCGTGTAAGACCATAG-CTAAG-CTATTGG-ATCGATA
1 TGAGATTCGTGTAAGACCAT-GTCTAAGAC-ATTGGCATCGATA
65840942 T
1 T
65840943 ACTATAACAT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
41 9 0.12
42 67 0.87
43 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTCGTGTAAGACCATGTCTAAGACATTGGCATCGATA
Found at i:65841855 original size:21 final size:21
Alignment explanation
Indices: 65841829--65841885 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
65841819 ATGGTATAAG
65841829 GTTGATGAATTGGTACATTTT
1 GTTGATGAATTGGTACATTTT
*
65841850 GTTGATGATGAATTGGTATATTTT
1 G-T--TGATGAATTGGTACATTTT
*
65841874 GTGGCATGAATT
1 GTTG-ATGAATT
65841886 ATATGATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 2 0.07
22 8 0.27
23 1 0.03
24 19 0.63
ACGTcount: A:0.25, C:0.04, G:0.26, T:0.46
Consensus pattern (21 bp):
GTTGATGAATTGGTACATTTT
Found at i:65848175 original size:29 final size:28
Alignment explanation
Indices: 65848139--65848216 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
65848129 TCATGAGATT
65848139 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
65848169 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
65848196 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
65848217 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:65848434 original size:174 final size:174
Alignment explanation
Indices: 65848169--65848496 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
65848159 AAATTGTACA
*
65848169 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
65848234 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
65848299 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
65848343 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
65848408 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
65848473 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
65848497 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:65851339 original size:42 final size:42
Alignment explanation
Indices: 65851292--65851375 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
65851282 TATGTATACG
*
65851292 TCACAAAACATAATCCCACAACTTCTAGCCTATACATGCCAT
1 TCACAAAACATAATCCCACAACTTCTAGCCTAAACATGCCAT
65851334 TCACAAAACATAATCCCACAACTTCTAGCCTAAACATGCCAT
1 TCACAAAACATAATCCCACAACTTCTAGCCTAAACATGCCAT
65851376 ACTTTAATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.39, C:0.33, G:0.05, T:0.23
Consensus pattern (42 bp):
TCACAAAACATAATCCCACAACTTCTAGCCTAAACATGCCAT
Found at i:65857819 original size:24 final size:24
Alignment explanation
Indices: 65857787--65857841 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
65857777 ACACCTTCAT
*
65857787 ATACATATACACATGAACACATAC
1 ATACATATACACATAAACACATAC
* *
65857811 ATACTTATACACATAAACACATAT
1 ATACATATACACATAAACACATAC
65857835 ATACATA
1 ATACATA
65857842 CCTTTCATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.51, C:0.22, G:0.02, T:0.25
Consensus pattern (24 bp):
ATACATATACACATAAACACATAC
Found at i:65858882 original size:31 final size:31
Alignment explanation
Indices: 65858847--65858907 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
65858837 AACTTTCACA
65858847 TATTTGCAATTTAGTCCATAGGCTCGTAAAG
1 TATTTGCAATTTAGTCCATAGGCTCGTAAAG
* * *
65858878 TATTTGCACTTTAGTCCCTAGGCTTGTAAA
1 TATTTGCAATTTAGTCCATAGGCTCGTAAA
65858908 ATGAAATGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (31 bp):
TATTTGCAATTTAGTCCATAGGCTCGTAAAG
Found at i:65863570 original size:12 final size:12
Alignment explanation
Indices: 65863553--65863578 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
65863543 TTTAATGTAA
65863553 TTCATACTCAAT
1 TTCATACTCAAT
65863565 TTCATACTCAAT
1 TTCATACTCAAT
65863577 TT
1 TT
65863579 AGTCCAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (12 bp):
TTCATACTCAAT
Found at i:65866423 original size:47 final size:47
Alignment explanation
Indices: 65866354--65866443 Score: 180
Period size: 47 Copynumber: 1.9 Consensus size: 47
65866344 ATCTCACAGT
65866354 TGTAACTAGGCATCCGAACTCCTTGAGTTGAGTCCGAGTTCATGAGA
1 TGTAACTAGGCATCCGAACTCCTTGAGTTGAGTCCGAGTTCATGAGA
65866401 TGTAACTAGGCATCCGAACTCCTTGAGTTGAGTCCGAGTTCAT
1 TGTAACTAGGCATCCGAACTCCTTGAGTTGAGTCCGAGTTCAT
65866444 TTATGGATGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (47 bp):
TGTAACTAGGCATCCGAACTCCTTGAGTTGAGTCCGAGTTCATGAGA
Found at i:65867317 original size:28 final size:27
Alignment explanation
Indices: 65867251--65867368 Score: 112
Period size: 28 Copynumber: 4.3 Consensus size: 27
65867241 TGGAGGAAGC
*
65867251 GTTCTGGTGGCTCTGCAACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* **
65867278 ATTTCTAATGGCTCTGCCACAAATATCT
1 -GTTCTGGTGGCTCTGCCACAAATATCT
* * *
65867306 GTTCCTGGTGGCCCTACCACAATTATCT
1 GTT-CTGGTGGCTCTGCCACAAATATCT
* *
65867334 GTATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTCTGCCACAAATATCT
*
65867361 GTTTTGGT
1 GTTCTGGT
65867369 AGCCATGCTA
Statistics
Matches: 72, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
26 5 0.07
27 10 0.14
28 56 0.78
29 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:65875211 original size:28 final size:28
Alignment explanation
Indices: 65875166--65875254 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 28
65875156 GGAGGAAGCG
65875166 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
65875194 TTCTGGTGGCCCTACCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
65875222 ATCTGGTGACTCTGTCAC-AATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
65875249 TT-TGGT
1 TTCTGGT
65875255 AGCCATGCTA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 4 0.08
27 9 0.18
28 38 0.75
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:65882853 original size:13 final size:13
Alignment explanation
Indices: 65882835--65882860 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65882825 GTGTAGTCGG
65882835 CACTTTGGGGGAA
1 CACTTTGGGGGAA
65882848 CACTTTGGGGGAA
1 CACTTTGGGGGAA
65882861 TTTCTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.38, T:0.23
Consensus pattern (13 bp):
CACTTTGGGGGAA
Found at i:65884628 original size:20 final size:21
Alignment explanation
Indices: 65884581--65884629 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 21
65884571 TGTTTACTGT
*
65884581 TATTAGCAGCTTTGCTGCGTTAA
1 TATTAGCAGCTTCGCTGCG-T-A
65884604 TATTAGCAGCTTCGCTGCG-A
1 TATTAGCAGCTTCGCTGCGTA
65884624 TATTAG
1 TATTAG
65884630 TGTGTTGGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 7 0.28
23 18 0.72
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.37
Consensus pattern (21 bp):
TATTAGCAGCTTCGCTGCGTA
Found at i:65884692 original size:21 final size:22
Alignment explanation
Indices: 65884666--65884709 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
65884656 TCCCCACATA
65884666 GTGTGTTGGTTGG-TAAGGGTG
1 GTGTGTTGGTTGGATAAGGGTG
*
65884687 GTGTGTTGGTTGGATTAGGGTG
1 GTGTGTTGGTTGGATAAGGGTG
65884709 G
1 G
65884710 GGTGGGGTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.09, C:0.00, G:0.52, T:0.39
Consensus pattern (22 bp):
GTGTGTTGGTTGGATAAGGGTG
Found at i:65885073 original size:18 final size:18
Alignment explanation
Indices: 65885050--65885086 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
65885040 AGGTCGTTTG
65885050 TGGGTTTTAAGTTT-TAAT
1 TGGGTTTTAA-TTTCTAAT
65885068 TGGGTTTTAATTTCTAAT
1 TGGGTTTTAATTTCTAAT
65885086 T
1 T
65885087 TTAAACTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.22, C:0.03, G:0.19, T:0.57
Consensus pattern (18 bp):
TGGGTTTTAATTTCTAAT
Found at i:65886114 original size:16 final size:18
Alignment explanation
Indices: 65886095--65886127 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
65886085 CATACAAATT
65886095 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
65886111 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
65886128 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:65886657 original size:40 final size:40
Alignment explanation
Indices: 65886609--65886715 Score: 106
Period size: 40 Copynumber: 2.6 Consensus size: 40
65886599 CTGTTATCAA
*
65886609 ATCACCGGCAATTAGCCTGCTAGGTTTTAAACCCAAATTC
1 ATCACCGGCAATTAGCCTGCTAGGCTTTAAACCCAAATTC
*** * ** **
65886649 ATCACCGGCACGAAGCCTGCTAGACTTTAAGTCTGAATTC
1 ATCACCGGCAATTAGCCTGCTAGGCTTTAAACCCAAATTC
* *
65886689 ATTCACCGGCATTTTGCCTGCTAGGCT
1 A-TCACCGGCAATTAGCCTGCTAGGCT
65886716 CGAAGCCCGA
Statistics
Matches: 52, Mismatches: 14, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
40 32 0.62
41 20 0.38
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (40 bp):
ATCACCGGCAATTAGCCTGCTAGGCTTTAAACCCAAATTC
Found at i:65894287 original size:43 final size:43
Alignment explanation
Indices: 65894228--65894348 Score: 192
Period size: 43 Copynumber: 2.9 Consensus size: 43
65894218 TCTGAATTCA
65894228 TTCACC-GCATT-TAGCCTACTAGGCTCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTACTAGGCTCGAAGCCCGATATTAT
* * *
65894269 TTCACTGGTATTATAGCCTACTAGGCTCGAGGCCCGATATTAT
1 TTCACCGGCATTATAGCCTACTAGGCTCGAAGCCCGATATTAT
*
65894312 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGA
1 TTCACCGGCATTATAGCCTACTAGGCTCGAAGCCCGA
65894349 ATTCATCATA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
41 5 0.07
42 4 0.06
43 62 0.87
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTACTAGGCTCGAAGCCCGATATTAT
Found at i:65895572 original size:55 final size:54
Alignment explanation
Indices: 65895479--65895590 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 54
65895469 AGCATGGCTG
* *
65895479 CCAGAACAGATATTGTGGCAGAGTCACCAGATATAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATATTGTAGCAGAGCCACCAGATATAGATAATTGTGGCAGAGCCA
* *
65895533 CCAGAAACAGATATTTTTAGCAGAGCCACCA-A-ATCAGATATTTGTGGCAGAGCCA
1 CCAG-AACAGATA-TTGTAGCAGAGCCACCAGATAT-AGATAATTGTGGCAGAGCCA
65895588 CCA
1 CCA
65895591 AAATGCTTCC
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
54 6 0.12
55 31 0.61
56 14 0.27
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (54 bp):
CCAGAACAGATATTGTAGCAGAGCCACCAGATATAGATAATTGTGGCAGAGCCA
Found at i:65895592 original size:27 final size:28
Alignment explanation
Indices: 65895479--65895590 Score: 142
Period size: 28 Copynumber: 4.1 Consensus size: 28
65895469 AGCATGGCTG
*
65895479 CCAGAA-CAGATA-TTGTGGCAGAGTCA
1 CCAGAATCAGATATTTGTGGCAGAGCCA
*
65895505 CCAGATAT-AGATAATTGTGGCAGAGCCA
1 CCAGA-ATCAGATATTTGTGGCAGAGCCA
* * *
65895533 CCAGAAACAGATATTTTTAGCAGAGCCA
1 CCAGAATCAGATATTTGTGGCAGAGCCA
65895561 CCA-AATCAGATATTTGTGGCAGAGCCA
1 CCAGAATCAGATATTTGTGGCAGAGCCA
65895588 CCA
1 CCA
65895591 AAATGCTTCC
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 5 0.07
27 31 0.42
28 38 0.51
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (28 bp):
CCAGAATCAGATATTTGTGGCAGAGCCA
Found at i:65897840 original size:12 final size:12
Alignment explanation
Indices: 65897823--65897852 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
65897813 TAAACATACG
65897823 AAATAATAATAA
1 AAATAATAATAA
65897835 AAATAATAATAA
1 AAATAATAATAA
*
65897847 CAATAA
1 AAATAA
65897853 CATCCAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATAATAATAA
Found at i:65899880 original size:28 final size:28
Alignment explanation
Indices: 65899824--65899934 Score: 129
Period size: 28 Copynumber: 4.1 Consensus size: 28
65899814 CAGCATGGCT
** *
65899824 ACCAGA-ACAGAT-TTTATGACAGAGTC
1 ACCAGATACAGATATTTATGGTAGAGCC
* *
65899850 ACCAGATACAGATAATTACGGTAGAGCC
1 ACCAGATACAGATATTTATGGTAGAGCC
* *
65899878 ACCAGAAACAGATATTTATGGCAGAGCC
1 ACCAGATACAGATATTTATGGTAGAGCC
*
65899906 ACCAGAT-CAGATATTTGTGGTAGAGCC
1 ACCAGATACAGATATTTATGGTAGAGCC
65899933 AC
1 AC
65899935 TAGAATGCTT
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 6 0.08
27 26 0.37
28 39 0.55
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (28 bp):
ACCAGATACAGATATTTATGGTAGAGCC
Found at i:65899928 original size:55 final size:55
Alignment explanation
Indices: 65899824--65899939 Score: 155
Period size: 55 Copynumber: 2.1 Consensus size: 55
65899814 CAGCATGGCT
*
65899824 ACCAG-AACAGATTTTATGACAGAGTCACCAGATACAGATAATTACGGTAGAGCC
1 ACCAGAAACAGATTTTATGACAGAGCCACCAGATACAGATAATTACGGTAGAGCC
* * **
65899878 ACCAGAAACAGATATTTATGGCAGAGCCACCAGAT-CAGATATTTGTGGTAGAGCC
1 ACCAGAAACAGAT-TTTATGACAGAGCCACCAGATACAGATAATTACGGTAGAGCC
*
65899933 ACTAGAA
1 ACCAGAA
65899940 TGCTTCCTCC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
54 5 0.09
55 30 0.56
56 19 0.35
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.21
Consensus pattern (55 bp):
ACCAGAAACAGATTTTATGACAGAGCCACCAGATACAGATAATTACGGTAGAGCC
Found at i:65902195 original size:12 final size:12
Alignment explanation
Indices: 65902178--65902207 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
65902168 TAAACATACG
65902178 AAATAATAATAA
1 AAATAATAATAA
65902190 AAATAATAATAA
1 AAATAATAATAA
*
65902202 CAATAA
1 AAATAA
65902208 CATCCAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATAATAATAA
Found at i:65904707 original size:21 final size:21
Alignment explanation
Indices: 65904681--65904729 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
65904671 TCACCAGGGT
*
65904681 GAGTGTTGGAAACAAACTGGG
1 GAGTGTTAGAAACAAACTGGG
65904702 GAGTGTTAGAAACAAACTGGG
1 GAGTGTTAGAAACAAACTGGG
*
65904723 GCGTGTT
1 GAGTGTT
65904730 TCTGGTGGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.31, C:0.10, G:0.37, T:0.22
Consensus pattern (21 bp):
GAGTGTTAGAAACAAACTGGG
Found at i:65915472 original size:36 final size:36
Alignment explanation
Indices: 65915422--65915493 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
65915412 CAAGTGTGAG
65915422 TTCTAGCTACGAGAAGTGACATTTCTGGGAAACGTA
1 TTCTAGCTACGAGAAGTGACATTTCTGGGAAACGTA
*
65915458 TTCTAGCTATGAGAAGTGACATTTCTGGGAAACGTA
1 TTCTAGCTACGAGAAGTGACATTTCTGGGAAACGTA
65915494 GTGTCTGCCG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (36 bp):
TTCTAGCTACGAGAAGTGACATTTCTGGGAAACGTA
Found at i:65918311 original size:27 final size:27
Alignment explanation
Indices: 65918281--65918477 Score: 238
Period size: 27 Copynumber: 7.3 Consensus size: 27
65918271 TACTGAAATG
*
65918281 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
65918308 CCCTC-ATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
65918334 CCCTCGATTTACAAAATTA-CAGTTTTA
1 CCCTCGATTTATAGAATTACCA-TTTTA
65918361 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
**
65918388 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
65918415 CCTTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
65918442 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
65918469 CCCTCGATT
1 CCCTCGATT
65918478 GTGAAATTAC
Statistics
Matches: 147, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.17
27 119 0.81
28 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:65918434 original size:81 final size:81
Alignment explanation
Indices: 65918281--65918477 Score: 292
Period size: 81 Copynumber: 2.4 Consensus size: 81
65918271 TACTGAAATG
*
65918281 CCCTCGATTTGTAGAATTACCATTTTACCCTC-ATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
65918345 CAAAATTA-CAGTTTTA
66 CAAAATTACCA-TTTTA
* * *
65918361 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCTTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
65918426 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
65918442 CCCTC-AGTTTACAAAATTACCGTTTTACCCTCGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
65918478 GTGAAATTAC
Statistics
Matches: 107, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
80 32 0.30
81 73 0.68
82 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:65918499 original size:27 final size:27
Alignment explanation
Indices: 65918476--65918635 Score: 171
Period size: 27 Copynumber: 5.9 Consensus size: 27
65918466 TTACCCTCGA
*
65918476 TTGTGAAATTACTGAAATACCCCT-GT
1 TTGTGAAATTACCGAAATACCCCTAGT
** *
65918502 AGGAT-AGAATTACCAAAATACCCCTAGT
1 TTG-TGA-AATTACCGAAATACCCCTAGT
* *
65918530 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGT
* * *
65918557 TTGTAAAATTACCGAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCTAGT
* *
65918584 TTGTGAAATTACCGAAATACCCTTAAT
1 TTGTGAAATTACCGAAATACCCCTAGT
* *
65918611 TTGTAAAATTACCAAAATACCCCTA
1 TTGTGAAATTACCGAAATACCCCTA
65918636 ATTTACAAAA
Statistics
Matches: 113, Mismatches: 17, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
26 2 0.02
27 107 0.95
28 4 0.04
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (27 bp):
TTGTGAAATTACCGAAATACCCCTAGT
Found at i:65918646 original size:81 final size:81
Alignment explanation
Indices: 65918509--65918657 Score: 226
Period size: 81 Copynumber: 1.8 Consensus size: 81
65918499 TGTAGGATAG
* * ** *
65918509 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
65918574 TACCACTGGTTTGTGA
66 TACCACTGGTTTGTGA
* * *
65918590 AATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTATAGAAA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
65918655 TAC
66 TAC
65918658 ACTTGACTTT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 60 1.00
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:65918648 original size:27 final size:27
Alignment explanation
Indices: 65918509--65918635 Score: 191
Period size: 27 Copynumber: 4.7 Consensus size: 27
65918499 TGTAGGATAG
65918509 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
65918536 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
65918563 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
65918590 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
65918617 AATTACCAAAATACCCCTA
1 AATTACCAAAATACCCCTA
65918636 ATTTACAAAA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:65918655 original size:27 final size:28
Alignment explanation
Indices: 65918509--65918657 Score: 112
Period size: 27 Copynumber: 5.5 Consensus size: 28
65918499 TGTAGGATAG
* **
65918509 AATTACCA-AAATACCCCTAGTTTGTAA
1 AATTACCAGAAATACCCCTAATTTACAA
* **
65918536 AATTACCA-AAATACCCCTAGTTTGTAA
1 AATTACCAGAAATACCCCTAATTTACAA
* ** ***
65918563 AATTACC-GAAATACCACTGGTTTGTGA
1 AATTACCAGAAATACCCCTAATTTACAA
* **
65918590 AATTACC-GAAATACCCTTAATTTGTAA
1 AATTACCAGAAATACCCCTAATTTACAA
65918617 AATTACCA-AAATACCCCTAATTTACAA
1 AATTACCAGAAATACCCCTAATTTACAA
*
65918644 AATTA-TAGAAATAC
1 AATTACCAGAAATAC
65918658 ACTTGACTTT
Statistics
Matches: 107, Mismatches: 12, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
26 1 0.01
27 106 0.99
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (28 bp):
AATTACCAGAAATACCCCTAATTTACAA
Found at i:65918655 original size:54 final size:54
Alignment explanation
Indices: 65918509--65918657 Score: 183
Period size: 54 Copynumber: 2.8 Consensus size: 54
65918499 TGTAGGATAG
*
65918509 AATTACCAAAATACCCCTAGTTTGTAAAATTACCA-AAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTA-CAGAAATACCCCTAATTTGTAA
* * * * * *
65918563 AATTACCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACAGAAATACCCCTAATTTGTAA
* ** *
65918617 AATTACCAAAATACCCCTAATTTACAAAATTATAGAAATAC
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACAGAAATAC
65918658 ACTTGACTTT
Statistics
Matches: 78, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 1 0.01
54 77 0.99
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTACAGAAATACCCCTAATTTGTAA
Found at i:65918710 original size:27 final size:27
Alignment explanation
Indices: 65918637--65918722 Score: 88
Period size: 27 Copynumber: 3.1 Consensus size: 27
65918627 ATACCCCTAA
* *
65918637 TTTACAAAATTATAGAAATA-CACTTGAC
1 TTTACAAAATTATAAAAATACCA-TTG-G
65918665 TTT-CTAAAAATTATAAAAATACCATTGG
1 TTTAC--AAAATTATAAAAATACCATTGG
65918693 TTTACAAAATTACT-AAAATACCATTGG
1 TTTACAAAATTA-TAAAAATACCATTGG
65918720 TTT
1 TTT
65918723 GTAGATTTAC
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
27 24 0.47
28 7 0.14
29 18 0.35
30 2 0.04
ACGTcount: A:0.44, C:0.13, G:0.07, T:0.36
Consensus pattern (27 bp):
TTTACAAAATTATAAAAATACCATTGG
Found at i:65929065 original size:27 final size:27
Alignment explanation
Indices: 65929000--65929055 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
65928990 CCCTTCACTT
65929000 TTTA-AAAATTA-TAGAAATACCATTGG
1 TTTACAAAATTACT-GAAATACCATTGG
*
65929026 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCATTGG
65929053 TTT
1 TTT
65929056 GTAAATTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 4 0.15
27 22 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCATTGG
Found at i:65929132 original size:27 final size:27
Alignment explanation
Indices: 65929100--65929151 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
65929090 GACTGAAATA
65929100 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
65929127 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
65929152 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:65930687 original size:71 final size:71
Alignment explanation
Indices: 65930611--65930752 Score: 275
Period size: 71 Copynumber: 2.0 Consensus size: 71
65930601 TAAGTGAAAG
65930611 AAAAAACTTGGATGCTTGAATGAGGGCCTTTTAAATTATTGTGGTAAATAAATGACACAAGGAAG
1 AAAAAACTTGGATGCTTGAATGAGGGCCTTTTAAATTATTGTGGTAAATAAATGACACAAGGAAG
65930676 CATGTA
66 CATGTA
*
65930682 AAAAAACTTGGATGCTTGGATGAGGGCCTTTTAAATTATTGTGGTAAATAAATGACACAAGGAAG
1 AAAAAACTTGGATGCTTGAATGAGGGCCTTTTAAATTATTGTGGTAAATAAATGACACAAGGAAG
65930747 CATGTA
66 CATGTA
65930753 GTCTAGTGGT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (71 bp):
AAAAAACTTGGATGCTTGAATGAGGGCCTTTTAAATTATTGTGGTAAATAAATGACACAAGGAAG
CATGTA
Found at i:65931419 original size:27 final size:27
Alignment explanation
Indices: 65931389--65931639 Score: 111
Period size: 27 Copynumber: 9.2 Consensus size: 27
65931379 ATTACTGTTT
* *
65931389 TACCCTCGATTTATGAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
* *
65931416 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACTAAAA
* **
65931443 TACCC-CTAGTTTGTAAAATTACCGAAA
1 TACCCTCGA-TTTGTAAAATTACTAAAA
* * *
65931470 TATCACT-GGTTTGTGAAATTAC-AGAAA
1 TA-CCCTCGATTTGTAAAATTACTA-AAA
** *
65931497 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
* **
65931524 TACCC-CTAATTTACAAAATTA-TAGAAA
1 TACCCTC-GATTTGTAAAATTACTA-AAA
* *
65931551 TACCCTTGACTTTCTAAAAATTA-TAAAAA
1 TACCCTCGA-TTTGT-AAAATTACT-AAAA
* * * **
65931580 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
* * * * *
65931607 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
*
65931634 CACCCT
1 TACCCT
65931640 TGTAGGATGA
Statistics
Matches: 177, Mismatches: 33, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
26 5 0.03
27 143 0.81
28 10 0.06
29 18 0.10
30 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACTAAAA
Found at i:65931462 original size:54 final size:54
Alignment explanation
Indices: 65931404--65931640 Score: 192
Period size: 54 Copynumber: 4.4 Consensus size: 54
65931394 TCGATTTATG
* ** *
65931404 AAATTACTAAAATACCCTTAGTTTGTAAAATTACCA-AAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTAGTTTACAAAATTA-CAGAAATACCCTTAGTTTGTA
* * * *** *
65931458 AAATTACCGAAATATCAC-TGGTTTGTGAAATTACAGAAATACCCTTAATTTGTA
1 AAATTACCAAAATA-CCCTTAGTTTACAAAATTACAGAAATACCCTTAGTTTGTA
* * * * *
65931512 AAATTACCAAAATACCCCTAATTTACAAAATTATAGAAATACCCTTGACTTTCTAA
1 AAATTACCAAAATACCCTTAGTTTACAAAATTACAGAAATACCCTT-AGTTTGT-A
** * * *
65931568 AAATTATAAAAATACCATTGGTTTACAAAATTACTA-AAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTAGTTTACAAAATTAC-AGAAATACCCTTAGTTTGTA
* * *
65931622 GATTTACCAAAACACCCTT
1 AAATTACCAAAATACCCTT
65931641 GTAGGATGAA
Statistics
Matches: 144, Mismatches: 33, Indels: 12
0.76 0.17 0.06
Matches are distributed among these distances:
53 4 0.03
54 90 0.62
55 11 0.08
56 38 0.26
57 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCTTAGTTTACAAAATTACAGAAATACCCTTAGTTTGTA
Found at i:65931551 original size:81 final size:81
Alignment explanation
Indices: 65931402--65931552 Score: 232
Period size: 81 Copynumber: 1.9 Consensus size: 81
65931392 CCTCGATTTA
* * ** *
65931402 TGAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCG
1 TGAAATTACTAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAG
65931467 AAATATCACTGGTTTG
66 AAATATCACTGGTTTG
*
65931483 TGAAATTAC-AGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTATA
1 TGAAATTACTA-AAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACA
65931547 GAAATA
65 GAAATA
65931553 CCCTTGACTT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
80 1 0.02
81 62 0.98
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.32
Consensus pattern (81 bp):
TGAAATTACTAAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAG
AAATATCACTGGTTTG
Found at i:65931593 original size:56 final size:55
Alignment explanation
Indices: 65931485--65931614 Score: 147
Period size: 56 Copynumber: 2.4 Consensus size: 55
65931475 CTGGTTTGTG
* * * *
65931485 AAATTACAGAAATACCCTT-AATTTGTAAAATTACCAAAATACCCCTAATTTACA
1 AAATTATAGAAATACCCTTGAATTTCTAAAATTACAAAAATACCACTAATTTACA
* * * **
65931539 AAATTATAGAAATACCCTTGACTTTCTAAAAATTATAAAAATACCATTGGTTTACA
1 AAATTATAGAAATACCCTTGAATTTCT-AAAATTACAAAAATACCACTAATTTACA
65931595 AAATTACTA-AAATACCCTTG
1 AAATTA-TAGAAATACCCTTG
65931615 GTTTGTAGAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
54 18 0.28
55 5 0.08
56 39 0.61
57 2 0.03
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (55 bp):
AAATTATAGAAATACCCTTGAATTTCTAAAATTACAAAAATACCACTAATTTACA
Found at i:65931695 original size:27 final size:27
Alignment explanation
Indices: 65931663--65931714 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
65931653 GACTGAAATA
65931663 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
65931690 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
65931715 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:65938755 original size:22 final size:23
Alignment explanation
Indices: 65938730--65938783 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 23
65938720 CAAAATTCTC
**
65938730 TCCAAAATTTCCA-TAAATGTTT
1 TCCAAAATTTCCAGTAAATGTCA
*
65938752 TCC-AAATTT-GAGTAAATGTCA
1 TCCAAAATTTCCAGTAAATGTCA
65938773 TCCAAAATTTC
1 TCCAAAATTTC
65938784 TTCAATGATC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 1 0.04
21 16 0.62
22 9 0.35
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (23 bp):
TCCAAAATTTCCAGTAAATGTCA
Found at i:65946077 original size:49 final size:49
Alignment explanation
Indices: 65946020--65946240 Score: 215
Period size: 49 Copynumber: 4.6 Consensus size: 49
65946010 ACATCAAAGT
*
65946020 CGATGCCATGTCTCAGACAGGTCTTACACTGACTTTCATATATCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGC
* * * * *
65946069 CGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATTTATCG-GTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-GC
* * * *
65946118 CGATGCCATGTCCCAGACAGGTCTTACGCTGAC--ACACA-AT--AAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGC
* * ** *
65946162 TGACGCCATGTCCCAGACAGGTCTTACACT-AGCTTGAATATCTCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATATCGAGGC
* *
65946211 TGATG-CATGTCCCAGACATGTCTTACACTG
1 CGATGCCATGTCCCAGACAGGTCTTACACTG
65946241 GTTCTCGTCT
Statistics
Matches: 139, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 29 0.21
46 4 0.03
47 3 0.02
48 24 0.17
49 78 0.56
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGC
Found at i:65946873 original size:20 final size:18
Alignment explanation
Indices: 65946836--65946886 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
65946826 CTATAGCAAC
65946836 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
65946853 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
65946873 TTACAACTTTACAA
1 TCACAA-TTTACAA
65946887 AATAGCCATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:65951513 original size:22 final size:23
Alignment explanation
Indices: 65951488--65951533 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
65951478 CAACCAAATC
65951488 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
65951510 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
65951533 A
1 A
65951534 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:65951539 original size:23 final size:23
Alignment explanation
Indices: 65951495--65951539 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
65951485 ATCAATTCAA
*
65951495 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
65951518 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
65951540 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:65954211 original size:30 final size:30
Alignment explanation
Indices: 65954175--65954235 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
65954165 TCCTTAACTC
65954175 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
65954205 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
65954235 A
1 A
65954236 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:65959979 original size:54 final size:54
Alignment explanation
Indices: 65959897--65960000 Score: 208
Period size: 54 Copynumber: 1.9 Consensus size: 54
65959887 TCAATGAGAC
65959897 TGTGTATCGACTATCGTCAGCTTAACAAGGTTACAATTAAGAATAAGTATGCTT
1 TGTGTATCGACTATCGTCAGCTTAACAAGGTTACAATTAAGAATAAGTATGCTT
65959951 TGTGTATCGACTATCGTCAGCTTAACAAGGTTACAATTAAGAATAAGTAT
1 TGTGTATCGACTATCGTCAGCTTAACAAGGTTACAATTAAGAATAAGTAT
65960001 CCTTAGTCGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (54 bp):
TGTGTATCGACTATCGTCAGCTTAACAAGGTTACAATTAAGAATAAGTATGCTT
Found at i:65972048 original size:39 final size:40
Alignment explanation
Indices: 65971953--65972214 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
65971943 TTGAATGATG
*
65971953 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
65971991 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
65972032 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
65972071 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
65972110 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
65972149 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
65972188 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
65972215 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:65973782 original size:17 final size:19
Alignment explanation
Indices: 65973760--65973798 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
65973750 TTTTGGACTT
65973760 TGTGGG-CCACACGGG-CA
1 TGTGGGCCCACACGGGTCA
*
65973777 TGTGGGCCCACATGGGTCA
1 TGTGGGCCCACACGGGTCA
65973796 TGT
1 TGT
65973799 TATGAGCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 8 0.42
19 5 0.26
ACGTcount: A:0.15, C:0.26, G:0.38, T:0.21
Consensus pattern (19 bp):
TGTGGGCCCACACGGGTCA
Found at i:65991108 original size:26 final size:26
Alignment explanation
Indices: 65991078--65991130 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
65991068 ATCCCTTGAC
65991078 ATAGTCAATTG-TGCATCATACCCTTA
1 ATAGTCAA-TGATGCATCATACCCTTA
*
65991104 ATAGTCAATGATGCATCGTACCCTTA
1 ATAGTCAATGATGCATCATACCCTTA
65991130 A
1 A
65991131 ATTAATCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (26 bp):
ATAGTCAATGATGCATCATACCCTTA
Found at i:66005423 original size:31 final size:31
Alignment explanation
Indices: 66005365--66005433 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 31
66005355 CCAAATTGTA
* *
66005365 TAATAAAATATATATATATATCGATTCATTT
1 TAATAAAATATATATATATAACGATTCAATT
*
66005396 TCAATAAAATTTCATATA-ATAAC-ATTCAATT
1 T-AATAAAATAT-ATATATATAACGATTCAATT
66005427 TAATAAA
1 TAATAAA
66005434 CAATATACAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
30 6 0.18
31 9 0.27
32 13 0.39
33 5 0.15
ACGTcount: A:0.49, C:0.09, G:0.01, T:0.41
Consensus pattern (31 bp):
TAATAAAATATATATATATAACGATTCAATT
Found at i:66008331 original size:16 final size:16
Alignment explanation
Indices: 66008310--66008346 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
66008300 CCCGACAAGG
66008310 TAATTTCAGAACCAGC
1 TAATTTCAGAACCAGC
66008326 TAATTTCAGAACCAGC
1 TAATTTCAGAACCAGC
66008342 TAATT
1 TAATT
66008347 CTGATCAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.30
Consensus pattern (16 bp):
TAATTTCAGAACCAGC
Found at i:66012613 original size:17 final size:18
Alignment explanation
Indices: 66012593--66012628 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
66012583 TAATCTTGTT
66012593 TTAATAAATTAAT-AGCA
1 TTAATAAATTAATAAGCA
*
66012610 TTAATAATTTAATAAGCA
1 TTAATAAATTAATAAGCA
66012628 T
1 T
66012629 ATATTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.39
Consensus pattern (18 bp):
TTAATAAATTAATAAGCA
Found at i:66031328 original size:40 final size:40
Alignment explanation
Indices: 66031245--66031547 Score: 405
Period size: 40 Copynumber: 7.6 Consensus size: 40
66031235 TTGAATGCTG
* * * * * *
66031245 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
66031285 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
66031325 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66031365 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66031405 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
66031445 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
66031485 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
66031524 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
66031548 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:66033124 original size:46 final size:44
Alignment explanation
Indices: 66033021--66033332 Score: 243
Period size: 46 Copynumber: 6.7 Consensus size: 44
66033011 TGGGTTAAGT
* *
66033021 GCCGATGCCATGTCCCAGACATGGTCTTACACTGTC-TATTATCACTTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTATT-T--CTCA
66033069 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATTTCTCGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATTTCTC-A
* * * *
66033114 GGCCGGTGCATGTCCCAGACATGTCTTACACTAGCCCT-TGTCTCAA
1 -GCCGATGCATGTCCCAGACATGTCTTACACT-GGCTTATTTCTC-A
* **
66033160 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATAGCTCAA
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTATTTCTC-A
* * * * *
66033208 GTCAATGCCATGTCCTAGACATGGTCTTACACAGACTATCATTTCTTC-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-ATTTC-TCA
* * * * **
66033256 GCCGATGTATGTCCTAGTCATGTCTTAAACTGGCTTACATCTCGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATTTCTC-A
66033301 GGCCGATGCATGTCCCAGACATGTCTTACACT
1 -GCCGATGCATGTCCCAGACATGTCTTACACT
66033333 AGCTCTCGTC
Statistics
Matches: 216, Mismatches: 35, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
43 2 0.01
44 5 0.02
45 2 0.01
46 93 0.43
47 81 0.38
48 28 0.13
49 3 0.01
50 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATTTCTCA
Found at i:66033346 original size:187 final size:187
Alignment explanation
Indices: 66033025--66033381 Score: 534
Period size: 187 Copynumber: 1.9 Consensus size: 187
66033015 TTAAGTGCCG
* * *
66033025 ATGCCATGTCCCAGACATGGTCTTACACTGTCTATTATCACTTAGCCGATGCATGTCCCAGACAT
1 ATGCCATGTCCCAGACATGGTCTTACACAGACTATCATCACTTAGCCGATGCATGTCCCAGACAT
* ** * *
66033090 GTCTTACACTGGCTTATTTCTCGAGGCCGGTGCATGTCCCAGACATGTCTTACACTAGCCCTTGT
66 GTCTTAAACTGGCTTACATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGT
* *
66033155 CTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATAGCTCAAGTCA
131 CTCAATGCCAATGCCATGTCCCAGACATCGTCTTACACTGGCTCATAGCTCAAGTCA
* ** * * * *
66033212 ATGCCATGTCCTAGACATGGTCTTACACAGACTATCATTTCTTCGCCGATGTATGTCCTAGTCAT
1 ATGCCATGTCCCAGACATGGTCTTACACAGACTATCATCACTTAGCCGATGCATGTCCCAGACAT
*
66033277 GTCTTAAACTGGCTTACATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGT
66 GTCTTAAACTGGCTTACATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGT
* *
66033342 CTCAATGTCAATGCCATGTCCCCGACATCGTCTTACACTG
131 CTCAATGCCAATGCCATGTCCCAGACATCGTCTTACACTG
66033382 CTTACACGAG
Statistics
Matches: 150, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
187 150 1.00
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.30
Consensus pattern (187 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGACTATCATCACTTAGCCGATGCATGTCCCAGACAT
GTCTTAAACTGGCTTACATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGT
CTCAATGCCAATGCCATGTCCCAGACATCGTCTTACACTGGCTCATAGCTCAAGTCA
Found at i:66038990 original size:42 final size:42
Alignment explanation
Indices: 66038938--66039031 Score: 102
Period size: 41 Copynumber: 2.3 Consensus size: 42
66038928 AGTAGGCTAT
* * * * *
66038938 AATGCTGGTGAAATGATA-TCGGGTTTCAAGCTTAGCAGGCGA
1 AATGCCGGTGAAATGA-ACTCGAGTTTAAAACCTAGCAGGCGA
*
66038980 AATGCCGGTG-AATGAACTCGAGTTTAAAACCTAGCAGGCTA
1 AATGCCGGTGAAATGAACTCGAGTTTAAAACCTAGCAGGCGA
*
66039021 AATGCCAGTGA
1 AATGCCGGTGA
66039032 TTTGATAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
40 1 0.02
41 33 0.77
42 9 0.21
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (42 bp):
AATGCCGGTGAAATGAACTCGAGTTTAAAACCTAGCAGGCGA
Found at i:66043009 original size:40 final size:40
Alignment explanation
Indices: 66042945--66043094 Score: 203
Period size: 40 Copynumber: 3.8 Consensus size: 40
66042935 TGACTAATTT
* * * *
66042945 CGGGCTAAG-CTCGAAGGCAATTGTGTGAGTTATTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAAC
66042984 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAAC
*
66043024 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAAC
* * * * *
66043064 CGAGCTAAGTCTCAAATGCATTTGAGCGAGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
66043095 AGCTATATCC
Statistics
Matches: 100, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 9 0.09
40 91 0.91
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAAC
Found at i:66043101 original size:40 final size:40
Alignment explanation
Indices: 66042945--66043120 Score: 196
Period size: 40 Copynumber: 4.5 Consensus size: 40
66042935 TGACTAATTT
* * * * *
66042945 CGGGCTAAG-CTCGAAGGCAATTGTGTGAGTTATTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
*
66042984 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
66043024 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
* * * * * *
66043064 CGAGCTAAGTCTCAAATGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAAC
**
66043104 C-GGCTAAACCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
66043121 TACTTGGTTT
Statistics
Matches: 118, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 21 0.18
40 97 0.82
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
Found at i:66052161 original size:79 final size:81
Alignment explanation
Indices: 66052059--66052242 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
66052049 GCTCCTCGTT
* *
66052059 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
66052121 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
66052139 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
66052203 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
66052219 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
66052243 CATCATCCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:66052176 original size:39 final size:41
Alignment explanation
Indices: 66052059--66052242 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
66052049 GCTCCTCGTT
* *
66052059 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
66052099 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
66052139 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
66052178 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
66052219 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
66052243 CATCATCCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:66052638 original size:13 final size:13
Alignment explanation
Indices: 66052620--66052644 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66052610 GGATGAGCAT
66052620 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
66052633 TTTTTTTTCTTT
1 TTTTTTTTCTTT
66052645 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:66053848 original size:28 final size:28
Alignment explanation
Indices: 66053806--66053908 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
66053796 TGGCCCCTTT
* *
66053806 AGGCCAAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
66053834 GGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* **
66053862 AGGCCCAATCACTTTCATATGGCCTGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
66053890 AGACCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
66053909 GTCATGCAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:66053990 original size:17 final size:18
Alignment explanation
Indices: 66053968--66054001 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
66053958 TGCCTATTAT
66053968 GGGCCC-TATAGCCCATC
1 GGGCCCATATAGCCCATC
*
66053985 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
66054002 TCTGGTTCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.18, C:0.38, G:0.24, T:0.21
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:66057501 original size:50 final size:50
Alignment explanation
Indices: 66057287--66057719 Score: 251
Period size: 50 Copynumber: 8.6 Consensus size: 50
66057277 CTGGTACGCA
* * * *
66057287 TAGTCGCCTGCACTTAGTACTACACATGTGACTTGAA--ATCT-AGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATATGACCT-AACTATCTCA-TACACG
* ** *
66057336 TAGTAGCCTGCACTTAGTACTGCACACGTGACCTAA-TAATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATATGACCTAACT-ATCTCATACACG
* ** * * * * * *
66057386 TAAG-AGCCT--ACGTTAAGCACTACACACGTGA-TTGAAGT-TGTCGGGTACGCA
1 T-AGTAGCCTGCAC-TT-AGTACTACACATATGACCT-AACTATCTC--ATACACG
* *
66057437 TAGTAACCTGCACTTAGTACTACACATACGACCTAACTATCTCATACACG
1 TAGTAGCCTGCACTTAGTACTACACATATGACCTAACTATCTCATACACG
* * * *
66057487 TAGTAGCCTACACTTAGTACTACACATATGACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATATGACCTAACTATCTCATACACG
** * * * * * *
66057537 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGT-TGTCGTGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATATGACCT-AACTATCTC--ATACACG
*** * **
66057588 TAGTAGCCTGCACTTAGTACTACACATGCAACCTAACTACCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATATGACCTAACTATCTCATACACG
* ** * * *
66057638 TAGTAGCCTACACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACAG
1 TAGTAGCCTGCACTTAGTACTACACATATGACCT--AACTATCTCATACAC-G
*
66057691 -AGTAGCCTGCACATAGTACTACACATATG
1 TAGTAGCCTGCACTTAGTACTACACATATG
66057720 TTCTCACAAT
Statistics
Matches: 297, Mismatches: 64, Indels: 43
0.74 0.16 0.11
Matches are distributed among these distances:
48 4 0.01
49 38 0.13
50 146 0.49
51 63 0.21
52 43 0.14
53 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATATGACCTAACTATCTCATACACG
Found at i:66057510 original size:26 final size:26
Alignment explanation
Indices: 66057481--66057561 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
66057471 AACTATCTCA
66057481 TACACGTAGTAGCCTACACTTAGTAC
1 TACACGTAGTAGCCTACACTTAGTAC
* *
66057507 TACACATA-T-GACCTA-ACCATTTG-A-
1 TACACGTAGTAG-CCTACA-C-TTAGTAC
*
66057531 TACACGTAGTAGCCTGCACTTAGTAC
1 TACACGTAGTAGCCTACACTTAGTAC
66057557 TACAC
1 TACAC
66057562 ACGTGATTGA
Statistics
Matches: 42, Mismatches: 5, Indels: 16
0.67 0.08 0.25
Matches are distributed among these distances:
24 12 0.29
25 13 0.31
26 17 0.40
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
TACACGTAGTAGCCTACACTTAGTAC
Found at i:66057559 original size:151 final size:150
Alignment explanation
Indices: 66057279--66057715 Score: 546
Period size: 151 Copynumber: 2.9 Consensus size: 150
66057269 GAAGCTATCT
* * * *
66057279 GGTACGCATAGTCGCCTGCACTTAGTACTACACATGTGACTTGAA--ATCTAGTACATGTAGTAG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT-AACTATCTA-TACACGTAGTAG
* * ** * *
66057342 CCTGCACTTAGTACTGCACACGTGACCTAATAATCTGATACACGTAAG-AGCCT--ACGTTAAGC
64 CCTACACTTAGTACTACACACGTGACCTAACCATTTGATACACGT-AGTAGCCTGCAC-TT-AGT
66057404 ACTACACACGTGATTGAAGTTGTCG
126 ACTACACACGTGATTGAAGTTGTCG
* *
66057429 GGTACGCATAGTAACCTGCACTTAGTACTACACATACGACCTAACTATCTCATACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCT-ATACACGTAGTAGC
**
66057494 CTACACTTAGTACTACACATATGACCTAACCATTTGATACACGTAGTAGCCTGCACTTAGTACTA
65 CTACACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGCCTGCACTTAGTACTA
66057559 CACACGTGATTGAAGTTGTCG
130 CACACGTGATTGAAGTTGTCG
* * * *
66057580 TGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTAACTACCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCT-ATACACGTAGTAGC
* *
66057645 CTACACTTAGTACTACACACGTGACCTAAAACCATCTT-AAACACAG-AGTAGCCTGCACATAGT
65 CTACACTTAGTACTACACACGTGACCT--AACCAT-TTGATACAC-GTAGTAGCCTGCACTTAGT
66057708 ACTACACA
126 ACTACACA
66057716 TATGTTCTCA
Statistics
Matches: 252, Mismatches: 25, Indels: 17
0.86 0.09 0.06
Matches are distributed among these distances:
149 2 0.01
150 39 0.15
151 168 0.67
152 3 0.01
153 37 0.15
154 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTATACACGTAGTAGCC
TACACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGCCTGCACTTAGTACTAC
ACACGTGATTGAAGTTGTCG
Found at i:66057605 original size:101 final size:101
Alignment explanation
Indices: 66057487--66057668 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
66057477 CTCATACACG
** ** *
66057487 TAGTAGCCTACACTTAGTACTACACATATGACCTAACCATTTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTACACTTAGTACTACACATACAACCTAACCACCTGATACACGTAGTAGCCTACACTT
66057552 AGTACTACACACGTGATTGAAGTTGTCGTGTACGCA
66 AGTACTACACACGTGATTGAAGTTGTCGTGTACGCA
* * * *
66057588 TAGTAGCCTGCACTTAGTACTACACATGCAACCTAACTACCTGGTACACGTAGTAGCCTACACTT
1 TAGTAGCCTACACTTAGTACTACACATACAACCTAACCACCTGATACACGTAGTAGCCTACACTT
66057653 AGTACTACACACGTGA
66 AGTACTACACACGTGA
66057669 CCTAAAACCA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTACACTTAGTACTACACATACAACCTAACCACCTGATACACGTAGTAGCCTACACTT
AGTACTACACACGTGATTGAAGTTGTCGTGTACGCA
Found at i:66063517 original size:49 final size:49
Alignment explanation
Indices: 66063464--66063558 Score: 127
Period size: 49 Copynumber: 1.9 Consensus size: 49
66063454 ATTGTCACTA
* * * * * *
66063464 AAACACTTTATGGATAGGCCACCGCTAATATGCACATATATTGCCATTG
1 AAACACTCTATGGACAAGCCACCACTAATATACACATATACTGCCATTG
*
66063513 AAACACTCTATGGACAAGCCACCACTGATATACACATATACTGCCA
1 AAACACTCTATGGACAAGCCACCACTAATATACACATATACTGCCA
66063559 CTTACTTCCT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 39 1.00
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (49 bp):
AAACACTCTATGGACAAGCCACCACTAATATACACATATACTGCCATTG
Found at i:66075560 original size:23 final size:24
Alignment explanation
Indices: 66075522--66075613 Score: 114
Period size: 24 Copynumber: 3.9 Consensus size: 24
66075512 AAGCTGCACG
*
66075522 TTGTGGACAAGCCACTCAATAACA
1 TTGTGGCCAAGCCACTCAATAACA
* *
66075546 TTGT-GCCAAACCACTCAATAGCA
1 TTGTGGCCAAGCCACTCAATAACA
* * *
66075569 TTATGGTCAAGCCACTTAATAACA
1 TTGTGGCCAAGCCACTCAATAACA
*
66075593 TTGTGGCCTAGCCACTCAATA
1 TTGTGGCCAAGCCACTCAATA
66075614 TTGTAATAAA
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
23 19 0.35
24 36 0.65
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (24 bp):
TTGTGGCCAAGCCACTCAATAACA
Found at i:66076248 original size:83 final size:83
Alignment explanation
Indices: 66076109--66076275 Score: 280
Period size: 83 Copynumber: 2.0 Consensus size: 83
66076099 CCCAAAAATC
* * *
66076109 CCTACACAAGATAATTATGTTTTTTAGGGAAATTAAGTGTATTTGTCCTAGTCAAACTCTAGGGA
1 CCTACACAAGATAATTATGTTATTGAGGGAAATTAAGTGTATTTGTCCTAGTCAAACTCTAAGGA
*
66076174 CTTCATTAACAGTTTAGG
66 CTTCAATAACAGTTTAGG
* *
66076192 CCTACACGAGATAATTATGTTATTGAGGGAAATTAGGTGTATTTGTCCTAGTCAAACTCTAAGGA
1 CCTACACAAGATAATTATGTTATTGAGGGAAATTAAGTGTATTTGTCCTAGTCAAACTCTAAGGA
66076257 CTTCAATAACAGTTTAGG
66 CTTCAATAACAGTTTAGG
66076275 C
1 C
66076276 ACTTTAATAT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 78 1.00
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (83 bp):
CCTACACAAGATAATTATGTTATTGAGGGAAATTAAGTGTATTTGTCCTAGTCAAACTCTAAGGA
CTTCAATAACAGTTTAGG
Found at i:66077343 original size:42 final size:43
Alignment explanation
Indices: 66077297--66077383 Score: 122
Period size: 42 Copynumber: 2.0 Consensus size: 43
66077287 AATCTACAAG
* *
66077297 GTCAGCATGCTTAACATGCAAATCATGTTT-AAAATCAACATA
1 GTCAGCATGCTTAACATGAAAATCATGTTTCAAAATCAAAATA
* * *
66077339 GTCAGCATGTTTAACATGAAAATCATTTTTCAATATCAAAATA
1 GTCAGCATGCTTAACATGAAAATCATGTTTCAAAATCAAAATA
66077382 GT
1 GT
66077384 GGCATGATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 27 0.69
43 12 0.31
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.32
Consensus pattern (43 bp):
GTCAGCATGCTTAACATGAAAATCATGTTTCAAAATCAAAATA
Found at i:66083098 original size:42 final size:42
Alignment explanation
Indices: 66083035--66083125 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
66083025 TCATTTACTT
* *
66083035 GATGCCATAGTCCGACAATGGTCTTACACGAAGTCTCATATC
1 GATGCCATAGTCCGACAATGGTCTTACACGAAATCACATATC
* *
66083077 GATGCCAT-GTCCTAGAC-ATGGTCTTGCACGAAATCACATTTC
1 GATGCCATAGTCC--GACAATGGTCTTACACGAAATCACATATC
66083119 GATGCCA
1 GATGCCA
66083126 ATACCATATC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 4 0.09
42 36 0.84
43 3 0.07
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (42 bp):
GATGCCATAGTCCGACAATGGTCTTACACGAAATCACATATC
Found at i:66083169 original size:48 final size:48
Alignment explanation
Indices: 66083109--66083200 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 48
66083099 CTTGCACGAA
* *
66083109 ATCACATTTCGATGCCAATACCATATCCCAGATATGGTCTTACAAAGG
1 ATCACATATCGATGCCAATACCATATCCCAGACATGGTCTTACAAAGG
* * *
66083157 ATCACATATCGATGTCAATGCCATATCCCAGACATGGTTTTACA
1 ATCACATATCGATGCCAATACCATATCCCAGACATGGTCTTACA
66083201 TGTCATTATG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (48 bp):
ATCACATATCGATGCCAATACCATATCCCAGACATGGTCTTACAAAGG
Found at i:66087089 original size:91 final size:91
Alignment explanation
Indices: 66086934--66087103 Score: 250
Period size: 91 Copynumber: 1.9 Consensus size: 91
66086924 CGCCCCTAAG
* ***
66086934 TGAACTCGGACTCAACTCAACAAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
* *
66086999 ACGAGTTCGGATGCCTAGTTACATCA
66 ACAAGCTCGGATGCCTAGTTACATCA
* * * *
66087025 TGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
66087090 ACAAGCTCGGATGC
66 ACAAGCTCGGATGC
66087104 TCAACCATCC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
91 69 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (91 bp):
TGAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCA
Found at i:66087119 original size:46 final size:45
Alignment explanation
Indices: 66086932--66087119 Score: 120
Period size: 46 Copynumber: 4.1 Consensus size: 45
66086922 CCCGCCCCTA
* * * *
66086932 AGTGAACTCGGACTCAACTCAACAAGCTCGGGTGTTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACAAGCTCGGATG--CTCAACCATCT
* * *
66086978 AATGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC-
1 AGTGAACTCGGACTCAACTCAACAAGCTCGGATGCTC-A---ACCATCT
* * * * * *
66087024 A-TGAACTCGGACTCAACTCAACGAGTTCAGACAT-TTGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACAAGCTC-G-GATGCT-CAACCATCT
66087069 AGTGAACTCGGACTCAACTCAACAAGCTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACAAGCTCGGATGCTCAACCAT-CT
66087115 AGTGA
1 AGTGA
66087120 CATGTCACTT
Statistics
Matches: 113, Mismatches: 14, Indels: 30
0.72 0.09 0.19
Matches are distributed among these distances:
43 1 0.01
44 10 0.09
45 33 0.29
46 65 0.58
47 3 0.03
48 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACAAGCTCGGATGCTCAACCATCT
Found at i:66093732 original size:20 final size:19
Alignment explanation
Indices: 66093688--66093728 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
66093678 CAATACCATC
*
66093688 CATCAATTGAAAAACTACA
1 CATCAATTGAAAAACTAAA
66093707 CATCAATTGAAAAACTAAA
1 CATCAATTGAAAAACTAAA
66093726 CAT
1 CAT
66093729 TCAAATTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.54, C:0.20, G:0.05, T:0.22
Consensus pattern (19 bp):
CATCAATTGAAAAACTAAA
Found at i:66097909 original size:23 final size:23
Alignment explanation
Indices: 66097878--66097962 Score: 89
Period size: 24 Copynumber: 3.6 Consensus size: 23
66097868 ACGTTGTGGA
66097878 CAAGCCACTCAATAACATTGTGC
1 CAAGCCACTCAATAACATTGTGC
* * * *
66097901 CAAACCACTCAATAGCATTATGGT
1 CAAGCCACTCAATAACATTGT-GC
* *
66097925 CAAGCCACTTAATAACGTTGTGAC
1 CAAGCCACTCAATAACATTGTG-C
*
66097949 CTAGCCACTCAATA
1 CAAGCCACTCAATA
66097963 TTGCAATAAA
Statistics
Matches: 48, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
23 19 0.40
24 29 0.60
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.24
Consensus pattern (23 bp):
CAAGCCACTCAATAACATTGTGC
Found at i:66102747 original size:42 final size:42
Alignment explanation
Indices: 66102684--66102811 Score: 133
Period size: 42 Copynumber: 3.1 Consensus size: 42
66102674 TCATTTACTT
* *
66102684 GATGCCATAGTCCAACAATGGTCTTACACGAAGTCTCATATC
1 GATGCCATAGTCCAACAATGGTCTTACACGAAATCACATATC
66102726 GATGCCAT-GTCCTAGAC-ATGGTCTTACACGAAATCACATATC
1 GATGCCATAGTCC-A-ACAATGGTCTTACACGAAATCACATATC
* * *
66102768 GATGCCA-A-CCCAA-ATATGGTCTTACA-TAGGATCACATATC
1 GATGCCATAGTCCAACA-ATGGTCTTACACGA-AATCACATATC
66102808 GATG
1 GATG
66102812 TCAATGCCAT
Statistics
Matches: 75, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
39 2 0.03
40 26 0.35
41 6 0.08
42 39 0.52
43 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
GATGCCATAGTCCAACAATGGTCTTACACGAAATCACATATC
Found at i:66102872 original size:37 final size:37
Alignment explanation
Indices: 66102831--66102913 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
66102821 TGTCACAGAC
* *
66102831 ATGGTTTTACATGGGATCACAATGCCATAGCCCAGCT
1 ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
* * ** *
66102868 ATGGTCTTACATGTCATTATGATGCCATAGCCTAGCT
1 ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
66102905 ATGGTCTTA
1 ATGGTCTTA
66102914 TACGTACTCA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (37 bp):
ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
Found at i:66107904 original size:41 final size:41
Alignment explanation
Indices: 66107820--66107968 Score: 196
Period size: 42 Copynumber: 3.6 Consensus size: 41
66107810 AAATCAACTA
* * *
66107820 TATATGTGGCACTTAGTGTGC--GATTCGACATAGCTTCGTC
1 TATATATGGCACTTAGTGTGCGAGATT-GAGATAGCTTCGGC
66107860 TATATATGGCA-TTGAGTGTGCGAGATTGAGATAGCTTCGGC
1 TATATATGGCACTT-AGTGTGCGAGATTGAGATAGCTTCGGC
*
66107901 TATATATGGCACTTAGTGTGCTAGATTTGAGATAGCTTCGGC
1 TATATATGGCACTTAGTGTGCGAGA-TTGAGATAGCTTCGGC
**
66107943 TATATACAGCACTTAGTGTGCGAGAT
1 TATATATGGCACTTAGTGTGCGAGAT
66107969 ATCGATTATG
Statistics
Matches: 97, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
39 2 0.02
40 17 0.18
41 34 0.35
42 44 0.45
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (41 bp):
TATATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGC
Found at i:66111385 original size:20 final size:20
Alignment explanation
Indices: 66111360--66111405 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
66111350 GTTGGGCCTT
66111360 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
66111380 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
66111399 GCCCATA
1 GCCCATA
66111406 ACAAAGCAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:66113886 original size:62 final size:59
Alignment explanation
Indices: 66113811--66113927 Score: 171
Period size: 62 Copynumber: 1.9 Consensus size: 59
66113801 ATTGATTATC
* * * *
66113811 TTAATATTTAATTTAATTTAATGTTTATCTTGTAGATAAATATTATATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAATATTATATTAATTTAATAAGAT
66113873 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
66113928 TTAAAGTGAC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 23 0.45
60 1 0.02
61 1 0.02
62 26 0.51
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAAGAT
Found at i:66114881 original size:16 final size:16
Alignment explanation
Indices: 66114862--66114894 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
66114852 TTTTCTTTTA
66114862 TATTTTA-TACATATTT
1 TATTTTATTACA-ATTT
66114878 TATTTTATTACAATTT
1 TATTTTATTACAATTT
66114894 T
1 T
66114895 TAATATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (16 bp):
TATTTTATTACAATTT
Found at i:66122696 original size:40 final size:40
Alignment explanation
Indices: 66122651--66122840 Score: 263
Period size: 40 Copynumber: 4.8 Consensus size: 40
66122641 CAAGCTCAAT
* * * *
66122651 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* *
66122691 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
66122731 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* * * **
66122771 CGCCGTCGGGTCTTAGCCCGAATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
66122811 TGCCTTCGGGTCTTATCCCGGATATATCAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA
66122841 TTCGATCCCG
Statistics
Matches: 132, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
Found at i:66122850 original size:20 final size:20
Alignment explanation
Indices: 66122825--66122864 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
66122815 TTCGGGTCTT
66122825 ATCCCGGATATATCAATTCG
1 ATCCCGGATATATCAATTCG
66122845 ATCCCGGATATATCAATTCG
1 ATCCCGGATATATCAATTCG
66122865 CACAAACGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (20 bp):
ATCCCGGATATATCAATTCG
Found at i:66122885 original size:60 final size:60
Alignment explanation
Indices: 66122787--66122904 Score: 209
Period size: 60 Copynumber: 2.0 Consensus size: 60
66122777 CGGGTCTTAG
* *
66122787 CCCGAATATATCAGTTCGCACAAATGCCTTCGGGTCTTATCCCGGATATATCAATTCGAT
1 CCCGAATATATCAATTCGCACAAACGCCTTCGGGTCTTATCCCGGATATATCAATTCGAT
*
66122847 CCCGGATATATCAATTCGCACAAACGCCTTCGGGTCTTATCCCGGATATATCAATTCG
1 CCCGAATATATCAATTCGCACAAACGCCTTCGGGTCTTATCCCGGATATATCAATTCG
66122905 CACAAATGCC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (60 bp):
CCCGAATATATCAATTCGCACAAACGCCTTCGGGTCTTATCCCGGATATATCAATTCGAT
Found at i:66122900 original size:40 final size:40
Alignment explanation
Indices: 66122845--66122935 Score: 164
Period size: 40 Copynumber: 2.3 Consensus size: 40
66122835 TATCAATTCG
66122845 ATCCCGGATATATCAATTCGCACAAACGCCTTCGGGTCTT
1 ATCCCGGATATATCAATTCGCACAAACGCCTTCGGGTCTT
*
66122885 ATCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTT
1 ATCCCGGATATATCAATTCGCACAAACGCCTTCGGGTCTT
*
66122925 AGCCCGGATAT
1 ATCCCGGATAT
66122936 CATTCAAATG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (40 bp):
ATCCCGGATATATCAATTCGCACAAACGCCTTCGGGTCTT
Found at i:66122920 original size:100 final size:100
Alignment explanation
Indices: 66122747--66122935 Score: 333
Period size: 100 Copynumber: 1.9 Consensus size: 100
66122737 CGGGTCTTAG
*
66122747 CCCGGATATATCAATTCGCACAAACGCCGTCGGGTCTTAGCCCGAATATATCAGTTCGCACAAAT
1 CCCGGATATATCAATTCGCACAAACGCCGTCGGGTCTTAGCCCGAATATATCAATTCGCACAAAT
*
66122812 GCCTTCGGGTCTTATCCCGGATATATCAATTCGAT
66 GCCTTCGGGTCTTAGCCCGGATATATCAATTCGAT
* * *
66122847 CCCGGATATATCAATTCGCACAAACGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAAT
1 CCCGGATATATCAATTCGCACAAACGCCGTCGGGTCTTAGCCCGAATATATCAATTCGCACAAAT
66122912 GCCTTCGGGTCTTAGCCCGGATAT
66 GCCTTCGGGTCTTAGCCCGGATAT
66122936 CATTCAAATG
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (100 bp):
CCCGGATATATCAATTCGCACAAACGCCGTCGGGTCTTAGCCCGAATATATCAATTCGCACAAAT
GCCTTCGGGTCTTAGCCCGGATATATCAATTCGAT
Found at i:66125278 original size:35 final size:35
Alignment explanation
Indices: 66125174--66125278 Score: 81
Period size: 35 Copynumber: 3.0 Consensus size: 35
66125164 AACCACTTTT
* *
66125174 GAGGTGTTGCTCTGTAGGACCTATATACATTCATC
1 GAGGTGTTGCTCTATAGGACCTATAAACATTCATC
* * ** * *
66125209 -ATGATGTTGCCCTATA-GAGCCTGCAGA-TTGTCATC
1 GA-GGTGTTGCTCTATAGGA-CCTATAAACAT-TCATC
*
66125244 GAGGTGTTGCTCTATAGGACCTATAAACCTTCATC
1 GAGGTGTTGCTCTATAGGACCTATAAACATTCATC
66125279 ACAATGTCGC
Statistics
Matches: 51, Mismatches: 13, Indels: 12
0.67 0.17 0.16
Matches are distributed among these distances:
34 4 0.08
35 43 0.84
36 4 0.08
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (35 bp):
GAGGTGTTGCTCTATAGGACCTATAAACATTCATC
Found at i:66142158 original size:17 final size:17
Alignment explanation
Indices: 66142136--66142171 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
66142126 CCAACTAATG
66142136 AATGACATATGATGAAC
1 AATGACATATGATGAAC
66142153 AATGACATATGATGAAC
1 AATGACATATGATGAAC
66142170 AA
1 AA
66142172 GCAGAACTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.50, C:0.11, G:0.17, T:0.22
Consensus pattern (17 bp):
AATGACATATGATGAAC
Found at i:66155365 original size:7 final size:7
Alignment explanation
Indices: 66155326--66155364 Score: 69
Period size: 7 Copynumber: 5.6 Consensus size: 7
66155316 GTTTAATACC
66155326 TAGGGTT
1 TAGGGTT
66155333 TAGGGTT
1 TAGGGTT
66155340 TAGGGTT
1 TAGGGTT
66155347 TAGGGTT
1 TAGGGTT
*
66155354 TAGGATT
1 TAGGGTT
66155361 TAGG
1 TAGG
66155365 AATTTATTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.18, C:0.00, G:0.41, T:0.41
Consensus pattern (7 bp):
TAGGGTT
Found at i:66155503 original size:34 final size:35
Alignment explanation
Indices: 66155465--66155531 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
66155455 ATTTTTTTTT
*
66155465 AAATTAATTAAATTAGGGTTTAA-AGTTTTTAAGA
1 AAATTAATTAAATTAGAGTTTAAGAGTTTTTAAGA
*
66155499 AAATTAATTAAATTAGAGTTTAAGGGTTTTTAA
1 AAATTAATTAAATTAGAGTTTAAGAGTTTTTAA
66155532 AAATAATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 22 0.73
35 8 0.27
ACGTcount: A:0.43, C:0.00, G:0.15, T:0.42
Consensus pattern (35 bp):
AAATTAATTAAATTAGAGTTTAAGAGTTTTTAAGA
Found at i:66155873 original size:126 final size:125
Alignment explanation
Indices: 66155633--66156130 Score: 694
Period size: 126 Copynumber: 4.0 Consensus size: 125
66155623 GTAGTTTCTG
* * * *
66155633 AAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAGTGACAAAAATGCTTCAAGCA-GATGCATT
1 AAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATGTCAAAAACGCTTCAAGCAGGATGCACT
* * * *
66155697 GTTAGCAAAAATACTAAAAAAAGCTCCCAGTTGGACACTCTTTTTCTACAGTAGTTCTTAA
66 GTCAGCAAAAATACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTACAGTAGTTCTT-A
* *
66155758 AAAAATAATTTTGAGAAGACGGTTTTGAAAAAATAATGAT-AAAAACGCTTCAAGCAGGATGCAC
1 AAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATG-TCAAAAACGCTTCAAGCAGGATGCAC
* **
66155822 TGTCAGCAAAAATACTGAAAGAAGCTCCCACTTATACGCTCTTTTTCTACAGTAGTTCTTGA
65 TGTCAGCAAAAATACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTACAGTAGTTCTT-A
** *
66155884 AAAAATAATTTTGAGAAGACAGTTCCCAAAAAATAATGTCAAAAACGCTTCAAGCAGGATGCATT
1 AAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATGTCAAAAACGCTTCAAGCAGGATGCACT
* * * *
66155949 GTCAGCAAAAGTACTGAAAAAAGCTCTCACTTGGATGCTCTTTTTCTACAGTAGTTCCTA
66 GTCAGCAAAAATACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTACAGTAGTTCTTA
* * ** *
66156009 AAAAATAATTTTGAGAAGACAGTTCTGAAAGAATAGTGTCAAAAATACTTCAAACAGGATGCACT
1 AAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATGTCAAAAACGCTTCAAGCAGGATGCACT
* * * *
66156074 GTCAGCAAAAGTACTGAAAAAAACTCTCACGTGGACGCTCTTTTTCTACAGTAGTTC
66 GTCAGCAAAAATACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTACAGTAGTTC
66156131 CTGCTTGGCC
Statistics
Matches: 333, Mismatches: 37, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
125 163 0.49
126 170 0.51
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (125 bp):
AAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATGTCAAAAACGCTTCAAGCAGGATGCACT
GTCAGCAAAAATACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTACAGTAGTTCTTA
Found at i:66156076 original size:251 final size:251
Alignment explanation
Indices: 66155633--66156130 Score: 721
Period size: 251 Copynumber: 2.0 Consensus size: 251
66155623 GTAGTTTCTG
** * *
66155633 AAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAGTGACAAAAATGCTTCAAGCAGATGCATTG
1 AAAAATAATTTTGAGAAGACAGTTCCCAAAAAATAATGACAAAAACGCTTCAAGCAGATGCATTG
* * *
66155698 TTAGCAAAAATACTAAAAAAAGCTCCCAGTTGGACACTCTTTTTCTACAGTAGTTCTTAAAAAAA
66 TCAGCAAAAATACTAAAAAAAGCTCCCACTTGGACACTCTTTTTCTACAGTAGTTCCTAAAAAAA
* * * *
66155763 TAATTTTGAGAAGACGGTTTTGAAAAAATAATGATAAAAACGCTTCAAGCAGGATGCACTGTCAG
131 TAATTTTGAGAAGACAGTTCTGAAAAAATAATGATAAAAACACTTCAAACAGGATGCACTGTCAG
* * * *
66155828 CAAAAATACTGAAAGAAGCTCCCACTTATACGCTCTTTTTCTACAGTAGTTCTTGA
196 CAAAAATACTGAAAAAAACTCCCACGTAGACGCTCTTTTTCTACAGTAGTTCTTGA
*
66155884 AAAAATAATTTTGAGAAGACAGTTCCCAAAAAATAATGTCAAAAACGCTTCAAGCAGGATGCATT
1 AAAAATAATTTTGAGAAGACAGTTCCCAAAAAATAATGACAAAAACGCTTCAAGCA-GATGCATT
* * * **
66155949 GTCAGCAAAAGTACTGAAAAAAGCTCTCACTTGGATGCTCTTTTTCTACAGTAGTTCCT-AAAAA
65 GTCAGCAAAAATACTAAAAAAAGCTCCCACTTGGACACTCTTTTTCTACAGTAGTTCCTAAAAAA
* * *
66156013 ATAATTTTGAGAAGACAGTTCTGAAAGAATAGTG-TCAAAAATACTTCAAACAGGATGCACTGTC
130 ATAATTTTGAGAAGACAGTTCTGAAAAAATAATGAT-AAAAACACTTCAAACAGGATGCACTGTC
* * *
66156077 AGCAAAAGTACTGAAAAAAACTCTCACGTGGACGCTCTTTTTCTACAGTAGTTC
194 AGCAAAAATACTGAAAAAAACTCCCACGTAGACGCTCTTTTTCTACAGTAGTTC
66156131 CTGCTTGGCC
Statistics
Matches: 218, Mismatches: 27, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
250 1 0.00
251 158 0.72
252 59 0.27
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (251 bp):
AAAAATAATTTTGAGAAGACAGTTCCCAAAAAATAATGACAAAAACGCTTCAAGCAGATGCATTG
TCAGCAAAAATACTAAAAAAAGCTCCCACTTGGACACTCTTTTTCTACAGTAGTTCCTAAAAAAA
TAATTTTGAGAAGACAGTTCTGAAAAAATAATGATAAAAACACTTCAAACAGGATGCACTGTCAG
CAAAAATACTGAAAAAAACTCCCACGTAGACGCTCTTTTTCTACAGTAGTTCTTGA
Found at i:66156131 original size:125 final size:126
Alignment explanation
Indices: 66155633--66156132 Score: 659
Period size: 125 Copynumber: 4.0 Consensus size: 126
66155623 GTAGTTTCTG
* * * *
66155633 AAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAGTGACAAAAATGCTTCAAGCA-GATGCATT
1 AAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATGTCAAAAACGCTTCAAGCAGGATGCACT
* * *
66155697 GTTAGCAAAAATACT-AAAAAAAGCTCCCA-GTTGGACACTCTTTTTCTACAGTAGTTCTTAA
66 GTCAGCAAAAATACTGAAAAAAA-CTCCCACG-TGGACGCTCTTTTTCTACAGTAGTTCCTAA
* *
66155758 AAAAATAATTTTGAGAAGACGGTTTTGAAAAAATAATGAT-AAAAACGCTTCAAGCAGGATGCAC
1 AAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATG-TCAAAAACGCTTCAAGCAGGATGCAC
* * * ** * *
66155822 TGTCAGCAAAAATACTGAAAGAAGCTCCCACTTATACGCTCTTTTTCTACAGTAGTTCTTGA
65 TGTCAGCAAAAATACTGAAAAAAACTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTAA
** *
66155884 AAAAATAATTTTGAGAAGACAGTTCCCAAAAAATAATGTCAAAAACGCTTCAAGCAGGATGCATT
1 AAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATGTCAAAAACGCTTCAAGCAGGATGCACT
* * * * *
66155949 GTCAGCAAAAGTACTGAAAAAAGCTCTCACTTGGATGCTCTTTTTCTACAGTAGTTCCT-A
66 GTCAGCAAAAATACTGAAAAAAACTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTAA
* * ** *
66156009 AAAAATAATTTTGAGAAGACAGTTCTGAAAGAATAGTGTCAAAAATACTTCAAACAGGATGCACT
1 AAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATGTCAAAAACGCTTCAAGCAGGATGCACT
* *
66156074 GTCAGCAAAAGTACTGAAAAAAACTCTCACGTGGACGCTCTTTTTCTACAGTAGTTCCT
66 GTCAGCAAAAATACTGAAAAAAACTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCT
66156133 GCTTGGCCTT
Statistics
Matches: 333, Mismatches: 37, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
125 165 0.50
126 163 0.49
127 5 0.02
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (126 bp):
AAAAATAATTTTGAGAAGACAGTTCTGAAAAAATAATGTCAAAAACGCTTCAAGCAGGATGCACT
GTCAGCAAAAATACTGAAAAAAACTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTAA
Found at i:66159534 original size:29 final size:27
Alignment explanation
Indices: 66159516--66159585 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
66159506 ATATTAAGTC
66159516 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
66159543 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
66159571 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
66159586 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:66159579 original size:28 final size:28
Alignment explanation
Indices: 66159516--66159613 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
66159506 ATATTAAGTC
*
66159516 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
66159543 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
66159571 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
66159600 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66159614 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:66162652 original size:16 final size:16
Alignment explanation
Indices: 66162631--66162661 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
66162621 GATTGAAATC
66162631 GAATAGATTTGTAATG
1 GAATAGATTTGTAATG
66162647 GAATAGATTTGTAAT
1 GAATAGATTTGTAAT
66162662 CATTAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.23, T:0.39
Consensus pattern (16 bp):
GAATAGATTTGTAATG
Found at i:66162900 original size:21 final size:22
Alignment explanation
Indices: 66162876--66162922 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
66162866 TTTATATTAA
*
66162876 ATTATATTAAAT-ATTTAAAAT
1 ATTATATTAAATGATGTAAAAT
* *
66162897 ATTATATTTAATGATGTAATAT
1 ATTATATTAAATGATGTAAAAT
66162919 ATTA
1 ATTA
66162923 AAATATTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (22 bp):
ATTATATTAAATGATGTAAAAT
Found at i:66162902 original size:31 final size:30
Alignment explanation
Indices: 66162867--66162930 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
66162857 ATAATTATTT
* *
66162867 TTATATTAAATTATATTAA-ATATTTAAAATA
1 TTATATTAAATGAT-GTAATATA-TTAAAATA
*
66162898 TTATATTTAATGATGTAATATATTAAAATA
1 TTATATTAAATGATGTAATATATTAAAATA
66162928 TTA
1 TTA
66162931 ATAATTCAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 14 0.48
31 15 0.52
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (30 bp):
TTATATTAAATGATGTAATATATTAAAATA
Found at i:66163023 original size:41 final size:39
Alignment explanation
Indices: 66162978--66163062 Score: 91
Period size: 41 Copynumber: 2.1 Consensus size: 39
66162968 TTACGTATTA
*
66162978 TCCCCATTTA-CTACTCAATTATCTTTTTTCAATTCTCTCCT
1 TCCCCATTTATCT-CTC-ATTATCTTTTTTCAATGCTCT-CT
* * *
66163019 TCCCCGTTTATTCTTTCATTTTCTTTTTTCAATGCTCTCT
1 TCCCCATTTA-TCTCTCATTATCTTTTTTCAATGCTCTCT
66163059 TCCC
1 TCCC
66163063 TTGCCAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
40 6 0.16
41 28 0.74
42 2 0.05
43 2 0.05
ACGTcount: A:0.14, C:0.32, G:0.02, T:0.52
Consensus pattern (39 bp):
TCCCCATTTATCTCTCATTATCTTTTTTCAATGCTCTCT
Found at i:66165802 original size:227 final size:227
Alignment explanation
Indices: 66165407--66165850 Score: 888
Period size: 227 Copynumber: 2.0 Consensus size: 227
66165397 GCATGAGCAT
66165407 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGA
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGA
66165472 AGGCAATTGTGCTTGCGGTTATATCCGGCTAAATTTCGAAGAGACTTGGGTTTGAATGTGAGCGT
66 AGGCAATTGTGCTTGCGGTTATATCCGGCTAAATTTCGAAGAGACTTGGGTTTGAATGTGAGCGT
66165537 TTTGTGCTGTAACTAATTCAATTAATACGCTCGACTAACCCGAACGATAAGGTATGTTTGCATGT
131 TTTGTGCTGTAACTAATTCAATTAATACGCTCGACTAACCCGAACGATAAGGTATGTTTGCATGT
66165602 GCTTCGGAAAAGTCGATTCGTTATTATGCAAG
196 GCTTCGGAAAAGTCGATTCGTTATTATGCAAG
66165634 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGA
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGA
66165699 AGGCAATTGTGCTTGCGGTTATATCCGGCTAAATTTCGAAGAGACTTGGGTTTGAATGTGAGCGT
66 AGGCAATTGTGCTTGCGGTTATATCCGGCTAAATTTCGAAGAGACTTGGGTTTGAATGTGAGCGT
66165764 TTTGTGCTGTAACTAATTCAATTAATACGCTCGACTAACCCGAACGATAAGGTATGTTTGCATGT
131 TTTGTGCTGTAACTAATTCAATTAATACGCTCGACTAACCCGAACGATAAGGTATGTTTGCATGT
66165829 GCTTCGGAAAAGTCGATTCGTT
196 GCTTCGGAAAAGTCGATTCGTT
66165851 TTAAATAGTA
Statistics
Matches: 217, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
227 217 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (227 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGA
AGGCAATTGTGCTTGCGGTTATATCCGGCTAAATTTCGAAGAGACTTGGGTTTGAATGTGAGCGT
TTTGTGCTGTAACTAATTCAATTAATACGCTCGACTAACCCGAACGATAAGGTATGTTTGCATGT
GCTTCGGAAAAGTCGATTCGTTATTATGCAAG
Found at i:66169499 original size:29 final size:29
Alignment explanation
Indices: 66169454--66169572 Score: 145
Period size: 29 Copynumber: 4.2 Consensus size: 29
66169444 GTGAGCATGA
*
66169454 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
66169482 ATATGAATGTGAATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
*
66169511 ATAAGAATATGAATTGGGCC-AGATGGGCC
1 ATATGAATATGAATTGGGCCTA-ATGGGCC
* * *
66169540 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
66169568 ATATG
1 ATATG
66169573 CATGTATGTA
Statistics
Matches: 77, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
28 23 0.30
29 54 0.70
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:66169522 original size:58 final size:57
Alignment explanation
Indices: 66169458--66169570 Score: 165
Period size: 58 Copynumber: 2.0 Consensus size: 57
66169448 GCATGAATAT
* **
66169458 AATATGATTTGGGCCTA-ATGGGCCATATGAATGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCC-AGATGGGCCATATGAATAAG-ATTGGGCCTAGTGGGCCATAAG
*
66169516 AATATGAATTGGGCCAGATGGGCCATTTGAATAAGATTGGGCCTAGTGGGCCATA
1 AATATGAATTGGGCCAGATGGGCCATATGAATAAGATTGGGCCTAGTGGGCCATA
66169571 TGCATGTATG
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
57 21 0.42
58 29 0.58
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (57 bp):
AATATGAATTGGGCCAGATGGGCCATATGAATAAGATTGGGCCTAGTGGGCCATAAG
Found at i:66175467 original size:39 final size:39
Alignment explanation
Indices: 66175424--66175498 Score: 89
Period size: 39 Copynumber: 1.9 Consensus size: 39
66175414 CAGGCTACGT
*
66175424 GCTGGAAATATGTCCGGG-CTAAAGTCCCGCAGGCTTTGA
1 GCTGGAAATATAT-CGGGTCTAAAGTCCCGCAGGCTTTGA
* * * *
66175463 GCTGGTATTATATCGGGTTTAAATTCCCGCAGGCTT
1 GCTGGAAATATATCGGGTCTAAAGTCCCGCAGGCTT
66175499 GTGCTGGTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
38 4 0.13
39 26 0.87
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
GCTGGAAATATATCGGGTCTAAAGTCCCGCAGGCTTTGA
Found at i:66186600 original size:5 final size:5
Alignment explanation
Indices: 66186590--66186621 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
66186580 TTGTGTGTTC
66186590 TTTAT TTTAT TTTA- TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
66186622 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:66186609 original size:14 final size:14
Alignment explanation
Indices: 66186590--66186620 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
66186580 TTGTGTGTTC
66186590 TTTATTTTATTTTA
1 TTTATTTTATTTTA
66186604 TTTATTTTATTTTA
1 TTTATTTTATTTTA
66186618 TTT
1 TTT
66186621 TTCACAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Done.