Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 195 of 290
Found at i:66967452 original size:25 final size:25
Alignment explanation
Indices: 66967423--66967474 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
66967413 TGATATAATG
66967423 CTATTTACCAAGCCTCTTTGCCACC
1 CTATTTACCAAGCCTCTTTGCCACC
66967448 CTATTTACCAAGCCTCTTTGCCACC
1 CTATTTACCAAGCCTCTTTGCCACC
66967473 CT
1 CT
66967475 TACTTACACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.19, C:0.40, G:0.08, T:0.33
Consensus pattern (25 bp):
CTATTTACCAAGCCTCTTTGCCACC
Found at i:66968352 original size:94 final size:91
Alignment explanation
Indices: 66968194--66968404 Score: 225
Period size: 94 Copynumber: 2.3 Consensus size: 91
66968184 GTGCCGATGC
* *
66968194 CATGTCCCAGACATGGTCTTACACT-GACACATCTCATAGCCGATGCATGTCTCAGACATGTCTT
1 CATGTCCCAGACAT-GTCTTACACTAGACACATCTAATAGCCGATGCATATCTCAGACATGTCTT
* * *
66968258 ACACTGGCTTACGT-CTCGAGGCCAATG
65 ACACTAGCTTACATAAT-GAGGCCAATG
*
66968285 CATGTCCCAGACATGTCTTACACTAGA-AC-TCGTAATGTGGCCGATGCCATATC-CTAGACATG
1 CATGTCCCAGACATGTCTTACACTAGACACATC-TAA--TAGCCGATG-CATATCTC-AGACAT-
* * **
66968347 GTCTTACACTAGCTTTCATAATGTGGCTGATG
60 GTCTTACACTAGCTTACATAATGAGGCCAATG
66968379 CATGTCCCAGACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
66968405 CTCACACGAG
Statistics
Matches: 102, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
89 2 0.02
90 14 0.14
91 16 0.16
92 9 0.09
93 11 0.11
94 49 0.48
95 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (91 bp):
CATGTCCCAGACATGTCTTACACTAGACACATCTAATAGCCGATGCATATCTCAGACATGTCTTA
CACTAGCTTACATAATGAGGCCAATG
Found at i:66968392 original size:47 final size:46
Alignment explanation
Indices: 66968144--66968407 Score: 193
Period size: 46 Copynumber: 5.6 Consensus size: 46
66968134 GTACCAATGC
* * * *
66968144 CATGTCCTAGACATGGTCTTACACAAGTTCTAGCAT-ATCTGTGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT--CATAATGTG-GCCGATG
*
66968193 CCATGTCCCAGACATGGTCTTACACTGACACATCTCAT-A----GCCGATG
1 -CATGTCCCAGACAT-GTCTTACACT-A-GC-TCTCATAATGTGGCCGATG
* * * * * *
66968239 CATGTCTCAGACATGTCTTACACTGGCT-TACGT-CTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CATAAT-GTGGCCGATG
** *
66968285 CATGTCCCAGACATGTCTTACACTAGAACTCGTAATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGGCCGATG
* * * *
66968331 CCATATCCTAGACATGGTCTTACACTAGCTTTCATAATGTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGGCCGATG
66968379 CATGTCCCAGACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
66968408 ACACGAGTGA
Statistics
Matches: 174, Mismatches: 27, Indels: 30
0.75 0.12 0.13
Matches are distributed among these distances:
40 1 0.01
41 3 0.02
42 1 0.01
44 10 0.06
45 13 0.07
46 62 0.36
47 26 0.15
48 27 0.16
50 23 0.13
51 5 0.03
53 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGGCCGATG
Found at i:66968406 original size:46 final size:46
Alignment explanation
Indices: 66968232--66968406 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 46
66968222 ACATCTCATA
* * * * *
66968232 GCCGATGCATGTCTCAGACATGTCTTACACTGGCTTACGT-CTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTAAT-GTG
* ***
66968278 GCCAATGCATGTCCCAGACATGTCTTACACTAGAACTCGTAATGTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTAATGTG
* * *
66968324 GCCGATGCCATATCCTAGACATGGTCTTACACTAGCTTTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTTCGTAATGTG
*
66968372 GCTGATGCATGTCCCAGACATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
66968407 CACACGAGTG
Statistics
Matches: 107, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
46 55 0.51
47 25 0.23
48 27 0.25
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTAATGTG
Found at i:66972118 original size:130 final size:129
Alignment explanation
Indices: 66971852--66972109 Score: 435
Period size: 130 Copynumber: 2.0 Consensus size: 129
66971842 ACATCTTCCT
*
66971852 TTATGAAAAGTCAATCACTATTAAATAGTGATAAAGTCATCCATCACAAAGATGGACGACCCATG
1 TTATGAAAAGTCAATCACTATTAAATAGTGATAAAGTCATCCATCACAAAGATGAACGACCCATG
*
66971917 ACCACGTTTACTTTTCATCAACCAAGTAATGCCAATAAAAATATCATTTACCCATGTTTTGCCC
66 ACCACGTTTACTTTTCATCAACCAAGTAATACCAATAAAAATATCATTTACCCATGTTTTGCCC
*
66971981 TTCATGAAAAGTCAATCACTATTAAATAGTGATAAAGTCATCCATCACAAAGATGAATGACCCAT
1 TT-ATGAAAAGTCAATCACTATTAAATAGTGATAAAGTCATCCATCACAAAGATGAACGACCCAT
* **
66972046 GACCACGTTTACTTTTCATCAACCATGTAATATTAATAAAAGGATATCATTTACCCATGTTTTG
65 GACCACGTTTACTTTTCATCAACCAAGTAATACCAATAAAA--ATATCATTTACCCATGTTTTG
66972110 GGTTATGAAT
Statistics
Matches: 120, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
129 2 0.02
130 97 0.81
132 21 0.17
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.30
Consensus pattern (129 bp):
TTATGAAAAGTCAATCACTATTAAATAGTGATAAAGTCATCCATCACAAAGATGAACGACCCATG
ACCACGTTTACTTTTCATCAACCAAGTAATACCAATAAAAATATCATTTACCCATGTTTTGCCC
Found at i:66973710 original size:35 final size:36
Alignment explanation
Indices: 66973641--66973711 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
66973631 AATTGGAACT
*
66973641 TAACAATATGATTTCTTGATATTTGGGATGATTTGA
1 TAACAATATGATTTCTTGATATCTGGGATGATTTGA
66973677 TAACAATATGATTTCTTGAT-TCTGGGATGATTTGA
1 TAACAATATGATTTCTTGATATCTGGGATGATTTGA
66973712 AGTGTTTTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 14 0.41
36 20 0.59
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.44
Consensus pattern (36 bp):
TAACAATATGATTTCTTGATATCTGGGATGATTTGA
Found at i:66982418 original size:46 final size:46
Alignment explanation
Indices: 66981465--66982395 Score: 1724
Period size: 46 Copynumber: 20.2 Consensus size: 46
66981455 CCCAGATAAG
* ** * * * *
66981465 GTCTTACACTGGCTCATATCTC-AAGTCGATGCCATGTCCCAGGCAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATG-CATGTCCTAGACAT
* *
66981511 GGTCTTACACTGAC-TATCATCTCGTA-GCCGATGCATGTCCTAGACAT
1 -GTCTTACACTGGCTTA-CGTCTCG-AGGCCGATGCATGTCCTAGACAT
66981558 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66981604 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66981650 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66981696 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66981742 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66981788 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66981834 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66981880 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66981926 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66981972 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66982018 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66982064 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66982110 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66982156 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66982202 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66982248 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66982294 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66982340 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
1 GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
66982386 GTCTTACACT
1 GTCTTACACT
66982396 AACCCCCATC
Statistics
Matches: 871, Mismatches: 8, Indels: 11
0.98 0.01 0.01
Matches are distributed among these distances:
45 1 0.00
46 832 0.96
47 31 0.04
48 6 0.01
49 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.28
Consensus pattern (46 bp):
GTCTTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCTAGACAT
Found at i:67001915 original size:46 final size:46
Alignment explanation
Indices: 67001816--67002036 Score: 169
Period size: 46 Copynumber: 4.7 Consensus size: 46
67001806 CTCTCAGGTC
* * * * * * *
67001816 GATGCCATATCCCAGACATGGTCTTACATTGACTATCATCTCGTAGCCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGTCTTG-AGGCT
*
67001865 -ATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCTTGAGGCT
* ** * ** * *
67001910 GATGCATGTCCTAGACATGTCTTACACT-AATCCCCGTCTCAATGTT
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-CTCGTCTTGAGGCT
* ** *
67001956 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGTCTTGAGGCT
*
67002004 GATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTC
67002037 ACACAGGAAT
Statistics
Matches: 136, Mismatches: 29, Indels: 17
0.75 0.16 0.09
Matches are distributed among these distances:
45 5 0.04
46 68 0.50
47 40 0.29
48 22 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTTGAGGCT
Found at i:67003360 original size:49 final size:50
Alignment explanation
Indices: 67003283--67003395 Score: 165
Period size: 49 Copynumber: 2.3 Consensus size: 50
67003273 TTGCGGATTC
* * * *
67003283 TCTGAAGCTAGTGTTAGCATCATTGAACTAGC-TCTTTGAGCAACCTTGG
1 TCTGAAGCTAGTGTTAGCAACATCGAACTAGCTTATTTGAGCAACCCTGG
* *
67003332 TTTGAAGCTAGTGTTAGCAACATCGAACTGGCTTATTTGAGCAACCCTGG
1 TCTGAAGCTAGTGTTAGCAACATCGAACTAGCTTATTTGAGCAACCCTGG
67003382 TCTGAAGCTAGTGT
1 TCTGAAGCTAGTGT
67003396 AAGAAACCCG
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
49 28 0.50
50 28 0.50
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (50 bp):
TCTGAAGCTAGTGTTAGCAACATCGAACTAGCTTATTTGAGCAACCCTGG
Found at i:67031588 original size:17 final size:17
Alignment explanation
Indices: 67031512--67031567 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
67031502 TTGGTAAACT
67031512 AAAGAAATAAAAGGGAA
1 AAAGAAATAAAAGGGAA
* **
67031529 AAAGAAGTGAAAA---TC
1 AAAGAAAT-AAAAGGGAA
67031544 AAAGAAATAAAAGGGAA
1 AAAGAAATAAAAGGGAA
67031561 AAAGAAA
1 AAAGAAA
67031568 AGAAATAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
14 4 0.14
15 7 0.24
17 14 0.48
18 4 0.14
ACGTcount: A:0.70, C:0.02, G:0.21, T:0.07
Consensus pattern (17 bp):
AAAGAAATAAAAGGGAA
Found at i:67031594 original size:22 final size:22
Alignment explanation
Indices: 67031544--67031588 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
67031534 AGTGAAAATC
67031544 AAAGAAATAAAAGGGAAAAAGA
1 AAAGAAATAAAAGGGAAAAAGA
67031566 AAAGAAATAAAAGGGAAAAAGA
1 AAAGAAATAAAAGGGAAAAAGA
67031588 A
1 A
67031589 GTGAAAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.04
Consensus pattern (22 bp):
AAAGAAATAAAAGGGAAAAAGA
Found at i:67034443 original size:11 final size:10
Alignment explanation
Indices: 67034384--67034442 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
67034374 GTTATATATA
*
67034384 ATAATATAAT
1 ATAATAAAAT
67034394 ATGAATAAAAT
1 AT-AATAAAAT
**
67034405 ATAAGGAAAT
1 ATAATAAAAT
67034415 ATAATATAAA-
1 ATAATA-AAAT
67034425 ATAATAAGAAT
1 ATAATAA-AAT
67034436 ATAATAA
1 ATAATAA
67034443 GTATTTTGCA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
9 1 0.03
10 20 0.50
11 19 0.47
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (10 bp):
ATAATAAAAT
Found at i:67034500 original size:14 final size:14
Alignment explanation
Indices: 67034483--67034512 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
67034473 ATTAGTACAA
*
67034483 AATAAATAATATAT
1 AATAAAAAATATAT
67034497 AATAAAAAATATAT
1 AATAAAAAATATAT
67034511 AA
1 AA
67034513 GAAAGATAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAAAAAATATAT
Found at i:67034566 original size:18 final size:18
Alignment explanation
Indices: 67034543--67034582 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
67034533 AATATTGAAT
*
67034543 AATAAAAATATAGTATGC
1 AATAAAAATATAGTATGA
67034561 AATAAAAATATAGTATGA
1 AATAAAAATATAGTATGA
67034579 AATA
1 AATA
67034583 TAATATGGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.28
Consensus pattern (18 bp):
AATAAAAATATAGTATGA
Found at i:67034991 original size:12 final size:11
Alignment explanation
Indices: 67034919--67034992 Score: 58
Period size: 12 Copynumber: 6.4 Consensus size: 11
67034909 ACAATTTTTA
67034919 AAAATATATAT
1 AAAATATATAT
*
67034930 AAAGAAATATAT
1 AAA-ATATATAT
*
67034942 AAAATAAGATAT
1 AAAAT-ATATAT
*
67034954 ACAATATTATAT
1 AAAATA-TATAT
** *
67034966 AATTTATAGAT
1 AAAATATATAT
67034977 AAAATATATGAT
1 AAAATATAT-AT
67034989 AAAA
1 AAAA
67034993 AATAATGGAA
Statistics
Matches: 47, Mismatches: 12, Indels: 7
0.71 0.18 0.11
Matches are distributed among these distances:
11 15 0.32
12 32 0.68
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.32
Consensus pattern (11 bp):
AAAATATATAT
Found at i:67037139 original size:206 final size:206
Alignment explanation
Indices: 67036817--67037666 Score: 1389
Period size: 206 Copynumber: 4.1 Consensus size: 206
67036807 TACATAGATG
* * * * **
67036817 CCAAATCATCTTAGATTTGCTTCAG-CGTAATCATCTGAAGGTTAAATCTGCTATGTCACTGCCC
1 CCAAACCATCTTGGATCTGCTTCAGTC-TAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCC
*
67036881 TCCGTCTAATATGGAGACGCCAAACTTCGATTTGTTCTCTGAA-AATACAGAGATGCCAAATCAT
65 TCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCT-AACAATACAGAGATGCCAAATCAT
* * *
67036945 CTTAGACTTGCTTCAGCGTAAGCACGTGAAAGCTAAATCCGCTATGTCTTCGATTTGCTCCTTGT
129 CTTAGACTTGCTTCAGCGTAAGAACGCGAAAGCTAAATCAGCTATGTCTTCGATTTGCTCCTTGT
67037010 AAGCACAAGGATA
194 AAGCACAAGGATA
*
67037023 CCAAACCATCTTGGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTACTATGTGTCTGCCCT
1 CCAAACCATCTTGGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCT
* * * *
67037088 CCGTCGAATATGGAGATGCCAAAATTCGATTTTTTCTCTGACAATACAGAGATGCCAAATCATCT
66 CCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCT
*
67037153 TAGACTTGCTTCTGCGTAAGAACGCGAAAGCTAAATCAGCTATGTCTTCGATTTGCTCCTTGTAA
131 TAGACTTGCTTCAGCGTAAGAACGCGAAAGCTAAATCAGCTATGTCTTCGATTTGCTCCTTGTAA
67037218 GCACAAGGATA
196 GCACAAGGATA
* *
67037229 CCAAACCATCTTGGATCTACTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCTCT
1 CCAAACCATCTTGGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCT
67037294 CCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCT
66 CCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCT
* * * *
67037359 TAGACTTGCTTCTGCGTAAGAATGCAAAAGCTAAATCAGCTATGTCTTCGATTTGCTCATTGTAA
131 TAGACTTGCTTCAGCGTAAGAACGCGAAAGCTAAATCAGCTATGTCTTCGATTTGCTCCTTGTAA
67037424 GCACAAGGATA
196 GCACAAGGATA
*
67037435 CCAAACCATCTTGGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCTCT
1 CCAAACCATCTTGGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCT
*
67037500 CCGTCGAATATGGAGATGCCAAACTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCT
66 CCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCT
* * * * *
67037565 TAGATTTGCTTCATCGTAAGCACGTGAAAGCTAAATCAGCTATGTCTTCGATTTGTTCCTTGTAA
131 TAGACTTGCTTCAGCGTAAGAACGCGAAAGCTAAATCAGCTATGTCTTCGATTTGCTCCTTGTAA
*
67037630 GCACAAGGATG
196 GCACAAGGATA
67037641 CCAAACCATCTTGGATCTTGCTTCAG
1 CCAAACCATCTTGGATC-TGCTTCAG
67037667 CCAGATCTGC
Statistics
Matches: 603, Mismatches: 38, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
205 1 0.00
206 593 0.98
207 9 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (206 bp):
CCAAACCATCTTGGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCT
CCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCT
TAGACTTGCTTCAGCGTAAGAACGCGAAAGCTAAATCAGCTATGTCTTCGATTTGCTCCTTGTAA
GCACAAGGATA
Found at i:67045905 original size:56 final size:53
Alignment explanation
Indices: 67045782--67045977 Score: 182
Period size: 55 Copynumber: 3.6 Consensus size: 53
67045772 TTACAATTTG
**
67045782 CATGTCTCAACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
** * * *
67045835 CATACCTTGGCATGGTCTTACATGAG-A-CCTTTTGCCTTATAGTAACTTATCAATGC
1 CATGTCTTGACATGGTCTTACATG-GTATCC--TTGCCTTAT-G-AACTCACCAATGC
* *
67045891 CATGTCTTGACATGGTCTTACATGGTATCCCTGCCTTA-GAAACCTTACCAATTGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA-TGC
* * * *
67045946 CATGCCTTGGCATGGTCATACATAGTATCCTT
1 CATGTCTTGACATGGTCTTACATGGTATCCTT
67045978 AAACCCTAAT
Statistics
Matches: 116, Mismatches: 18, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
52 2 0.02
53 23 0.20
54 17 0.15
55 39 0.34
56 33 0.28
57 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
Found at i:67047070 original size:42 final size:42
Alignment explanation
Indices: 67047011--67047240 Score: 235
Period size: 43 Copynumber: 5.4 Consensus size: 42
67047001 GTTTTTTTCT
** * *
67047011 AAAAAACATCGCTAAAGACCAGGACCTTTAGCGGCACTCTTA
1 AAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTA
* * *
67047053 AAAAAATGCCGCCAAAGACCAGGACCTTTAGCGGCGTTTTTTA
1 AAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCG-CTTTTA
* * * * *
67047096 TAAAAGCGCCGCTAAAGACTAGAACCTTTAGCGGCGCTTTTTT
1 AAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGC-TTTTA
* * *
67047139 AAAAAACGCCGCTATAGACCAAGAACTTTAGCGGCGCTTTTA
1 AAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTA
* * * * *
67047181 TAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGTGCTTTTGTA
1 -AAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGC-TTT-TA
67047226 AAAAAACGCCGCTAA
1 AAAAAACGCCGCTAA
67047241 TTTGCCCAGT
Statistics
Matches: 153, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
42 35 0.23
43 99 0.65
44 17 0.11
45 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.24
Consensus pattern (42 bp):
AAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTA
Found at i:67047566 original size:21 final size:21
Alignment explanation
Indices: 67047542--67047581 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
67047532 TTCTGCTCCA
67047542 CCTCCCTCGCTGCTGCCTCAG
1 CCTCCCTCGCTGCTGCCTCAG
67047563 CCTCCCTCGCTGCTGCCTC
1 CCTCCCTCGCTGCTGCCTC
67047582 CGCTCTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.03, C:0.55, G:0.17, T:0.25
Consensus pattern (21 bp):
CCTCCCTCGCTGCTGCCTCAG
Found at i:67048177 original size:17 final size:19
Alignment explanation
Indices: 67048140--67048177 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
67048130 TACAATATAG
67048140 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTATTTAA
67048159 TAGTAAAAAT-TTA-TTAA
1 TAGTAAAAATATTATTTAA
67048176 TA
1 TA
67048178 CTTGACAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.32
18 3 0.16
19 10 0.53
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
TAGTAAAAATATTATTTAA
Found at i:67049368 original size:12 final size:12
Alignment explanation
Indices: 67049351--67049377 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
67049341 GATATTTTCA
67049351 TCTAAGTCTTGT
1 TCTAAGTCTTGT
67049363 TCTAAGTCTTGT
1 TCTAAGTCTTGT
67049375 TCT
1 TCT
67049378 GGAAAAGGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.19, G:0.15, T:0.52
Consensus pattern (12 bp):
TCTAAGTCTTGT
Found at i:67056602 original size:40 final size:40
Alignment explanation
Indices: 67056547--67056804 Score: 371
Period size: 40 Copynumber: 6.5 Consensus size: 40
67056537 CGGATGATAA
* *
67056547 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
67056587 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
67056627 CCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
67056667 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67056707 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67056747 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
67056787 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67056805 TGCTTGGTTG
Statistics
Matches: 206, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 17 0.08
40 188 0.91
41 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67060794 original size:37 final size:37
Alignment explanation
Indices: 67060735--67060873 Score: 233
Period size: 37 Copynumber: 3.8 Consensus size: 37
67060725 AGCTCAGACG
* *
67060735 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
67060772 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
67060809 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
67060846 TAATCTCCACACATAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
67060874 TAGAGCTTGG
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:67061111 original size:49 final size:49
Alignment explanation
Indices: 67060992--67061114 Score: 146
Period size: 47 Copynumber: 2.6 Consensus size: 49
67060982 CCCTTCGGGA
* * * * *
67060992 CTTATCACAT-T-TATACACTTTCACATCCTTCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCACTAGGC
* * *
67061039 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCACTAGGC
67061086 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
67061115 TATTCAAATA
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
46 1 0.02
47 42 0.68
49 19 0.31
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCACTAGGC
Found at i:67065354 original size:39 final size:40
Alignment explanation
Indices: 67065259--67065355 Score: 142
Period size: 41 Copynumber: 2.4 Consensus size: 40
67065249 GGTTATGGGA
* *
67065259 TTTTTAGTGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCCCT-G
*
67065300 TTTTTAGCGGCGTTTTACTGAAAGCGCCGCTAATGCCCT-
1 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCCCTG
*
67065339 TTTTTAGCAGCGTTTTA
1 TTTTTAGCGGCGTTTTA
67065356 GTAAAAAACG
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.31
41 36 0.69
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.37
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCCCTG
Found at i:67066399 original size:11 final size:11
Alignment explanation
Indices: 67066379--67066411 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
67066369 TGATGATGAA
67066379 AAATGATAGAT
1 AAATGATAGAT
*
67066390 AAATGGTAGAT
1 AAATGATAGAT
67066401 AAATGATAGAT
1 AAATGATAGAT
67066412 TTGCATGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.52, C:0.00, G:0.21, T:0.27
Consensus pattern (11 bp):
AAATGATAGAT
Found at i:67070073 original size:27 final size:27
Alignment explanation
Indices: 67070034--67070119 Score: 131
Period size: 27 Copynumber: 3.2 Consensus size: 27
67070024 TGTACCTGGA
67070034 CCCCTAA-TCGATAAAATGACTATTATG
1 CCCCTAAGT-GATAAAATGACTATTATG
**
67070061 CCCCTGTGTGATAAAATGACTATTATG
1 CCCCTAAGTGATAAAATGACTATTATG
67070088 -CCCTAAGTGATAAAATGACTATTATG
1 CCCCTAAGTGATAAAATGACTATTATG
67070114 CCCCTA
1 CCCCTA
67070120 TGAGATGTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 24 0.45
27 28 0.53
28 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (27 bp):
CCCCTAAGTGATAAAATGACTATTATG
Found at i:67070131 original size:26 final size:27
Alignment explanation
Indices: 67070043--67070121 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 27
67070033 ACCCCTAATC
*
67070043 GATAAAATGACTATTATGCCCCTGTGT
1 GATAAAATGACTATTATGCCCCTATGT
*
67070070 GATAAAATGACTATTATG-CCCTAAGT
1 GATAAAATGACTATTATGCCCCTATGT
67070096 GATAAAATGACTATTATGCCCCTATG
1 GATAAAATGACTATTATGCCCCTATG
67070122 AGATGTATGA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 24 0.50
27 24 0.50
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (27 bp):
GATAAAATGACTATTATGCCCCTATGT
Found at i:67070771 original size:18 final size:19
Alignment explanation
Indices: 67070731--67070771 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
67070721 AATAAGGCCT
*
67070731 CTTT-GGATTTTATTTTCA
1 CTTTGGGATTTTAATTTCA
*
67070749 ATTTGGGATTTTAATTT-A
1 CTTTGGGATTTTAATTTCA
67070767 CTTTG
1 CTTTG
67070772 ATTATAACTG
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.20, C:0.07, G:0.15, T:0.59
Consensus pattern (19 bp):
CTTTGGGATTTTAATTTCA
Found at i:67080327 original size:30 final size:30
Alignment explanation
Indices: 67080293--67080359 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
67080283 GGGGCAGACT
67080293 GTGTGTCACACACGGCCTAGACACACGCCC
1 GTGTGTCACACACGGCCTAGACACACGCCC
*
67080323 GTGTGTCACACACGGCCTAGACACACGCCT
1 GTGTGTCACACACGGCCTAGACACACGCCC
67080353 GTGTGTC
1 GTGTGTC
67080360 TACCCATGTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.21, C:0.36, G:0.25, T:0.18
Consensus pattern (30 bp):
GTGTGTCACACACGGCCTAGACACACGCCC
Found at i:67098975 original size:40 final size:40
Alignment explanation
Indices: 67098917--67099051 Score: 207
Period size: 40 Copynumber: 3.4 Consensus size: 40
67098907 CTGGCCCTAT
* * *
67098917 GGGACATAGCCCGAATATAGTAACTCGCACCAATGCCTTC
1 GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC
67098957 GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC
* * * *
67098997 GGAACTTAGCCCGGATGTAATAACTGGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC
67099037 GGGACTTAGCCCGGA
1 GGGACTTAGCCCGGA
67099052 ACTAGTCACT
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC
Found at i:67122663 original size:16 final size:16
Alignment explanation
Indices: 67122642--67122674 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
67122632 TAAAACTGTC
*
67122642 TCAAACAATTCATATA
1 TCAAACAATTCAGATA
67122658 TCAAACAATTCAGATA
1 TCAAACAATTCAGATA
67122674 T
1 T
67122675 TCCACATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.18, G:0.03, T:0.30
Consensus pattern (16 bp):
TCAAACAATTCAGATA
Found at i:67126826 original size:46 final size:45
Alignment explanation
Indices: 67126724--67126838 Score: 142
Period size: 46 Copynumber: 2.5 Consensus size: 45
67126714 GCCGCTGCTG
* * *
67126724 TGTCCCAGACATGGTCTTACACTGACACATCTCACAGCCGATGCA
1 TGTCCCAGACATGGTCTTACACTAACACATCTCACAGCCAATGAA
** * *
67126769 TGTCCCAGACAT-GTCTTACACTAACTTATGTCTCGAGGCCAATGAA
1 TGTCCCAGACATGGTCTTACACTAACACATCTCAC-A-GCCAATGAA
67126815 TGTCCCAGACATGGTCTTACACTA
1 TGTCCCAGACATGGTCTTACACTA
67126839 GCTCTCATAA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
44 17 0.28
45 13 0.22
46 19 0.32
47 11 0.18
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (45 bp):
TGTCCCAGACATGGTCTTACACTAACACATCTCACAGCCAATGAA
Found at i:67138899 original size:15 final size:15
Alignment explanation
Indices: 67138879--67138908 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
67138869 CCAGTATATT
67138879 ATTTTATTTCACTTA
1 ATTTTATTTCACTTA
67138894 ATTTTATTTCACTTA
1 ATTTTATTTCACTTA
67138909 GCCTGCCTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.00, T:0.60
Consensus pattern (15 bp):
ATTTTATTTCACTTA
Found at i:67142099 original size:40 final size:40
Alignment explanation
Indices: 67142063--67142200 Score: 224
Period size: 40 Copynumber: 3.5 Consensus size: 40
67142053 ATATCCGGGT
*
67142063 TAAGTCCCGAAGAGCATTCGTGCTAGTGTTACATCCGGGC
1 TAAGTCCCGAAGAGCATTCGTGCTAGTGTTACATCCGAGC
*
67142103 TAAGTCCCGAAGAGCATTCGTGCTAGTGTTATATCCGAGC
1 TAAGTCCCGAAGAGCATTCGTGCTAGTGTTACATCCGAGC
67142143 TAAGTCCCGAAGAGCATTCGTGCT-GTTGTTACATCCGAGC
1 TAAGTCCCGAAGAGCATTCGTGCTAG-TGTTACATCCGAGC
* *
67142183 TAAGTCCTGAAGGGCATT
1 TAAGTCCCGAAGAGCATT
67142201 TGTGTCGATG
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 91 0.99
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGAGCATTCGTGCTAGTGTTACATCCGAGC
Found at i:67142413 original size:25 final size:25
Alignment explanation
Indices: 67142376--67142424 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
67142366 TGTAATAACG
67142376 AATGAATATAGGCACTATGTGTGCA
1 AATGAATATAGGCACTATGTGTGCA
*
67142401 AATGAAT-TGAGGCACTGTGTGTGC
1 AATGAATAT-AGGCACTATGTGTGC
67142425 GAATTCTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.31, C:0.12, G:0.29, T:0.29
Consensus pattern (25 bp):
AATGAATATAGGCACTATGTGTGCA
Found at i:67144471 original size:39 final size:40
Alignment explanation
Indices: 67144267--67144489 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
67144257 TTGAATGCTG
* * * * * *
67144267 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
67144307 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
67144347 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* **
67144387 TCTGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
67144427 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
67144466 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
67144490 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 35 0.22
40 116 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:67150355 original size:50 final size:50
Alignment explanation
Indices: 67150280--67150375 Score: 174
Period size: 50 Copynumber: 1.9 Consensus size: 50
67150270 AATGCTTGCA
* *
67150280 CTCCTCCATCTAATGCATGTTCTTCTCTTGTTACTTCTTCTAGCATTGTG
1 CTCCTCCACCTAATCCATGTTCTTCTCTTGTTACTTCTTCTAGCATTGTG
67150330 CTCCTCCACCTAATCCATGTTCTTCTCTTGTTACTTCTTCTAGCAT
1 CTCCTCCACCTAATCCATGTTCTTCTCTTGTTACTTCTTCTAGCAT
67150376 ATCTCTTGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.15, C:0.31, G:0.09, T:0.45
Consensus pattern (50 bp):
CTCCTCCACCTAATCCATGTTCTTCTCTTGTTACTTCTTCTAGCATTGTG
Found at i:67150385 original size:24 final size:24
Alignment explanation
Indices: 67150353--67150399 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
67150343 TCCATGTTCT
67150353 TCTCTTGTTACTTCTTCTAGCATA
1 TCTCTTGTTACTTCTTCTAGCATA
67150377 TCTCTTGTTACTTCTTCTAGCAT
1 TCTCTTGTTACTTCTTCTAGCAT
67150400 TGTGCTCCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.15, C:0.26, G:0.09, T:0.51
Consensus pattern (24 bp):
TCTCTTGTTACTTCTTCTAGCATA
Found at i:67150429 original size:74 final size:74
Alignment explanation
Indices: 67150303--67150445 Score: 259
Period size: 74 Copynumber: 1.9 Consensus size: 74
67150293 TGCATGTTCT
* * *
67150303 TCTCTTGTTACTTCTTCTAGCATTGTGCTCCTCCACCTAATCCATGTTCTTCTCTTGTTACTTCT
1 TCTCTTGTTACTTCTTCTAGCATTGTGCTCCTCCACCTAACCCATGTCCTTCTCTTATTACTTCT
67150368 TCTAGCATA
66 TCTAGCATA
67150377 TCTCTTGTTACTTCTTCTAGCATTGTGCTCCTCCACCTAACCCATGTCCTTCTCTTATTACTTCT
1 TCTCTTGTTACTTCTTCTAGCATTGTGCTCCTCCACCTAACCCATGTCCTTCTCTTATTACTTCT
67150442 TCTA
66 TCTA
67150446 AGAAATATTC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 66 1.00
ACGTcount: A:0.15, C:0.31, G:0.08, T:0.45
Consensus pattern (74 bp):
TCTCTTGTTACTTCTTCTAGCATTGTGCTCCTCCACCTAACCCATGTCCTTCTCTTATTACTTCT
TCTAGCATA
Found at i:67159731 original size:16 final size:16
Alignment explanation
Indices: 67159692--67159723 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
67159682 TTAACAGATA
67159692 GAGGTTTTGCTTTACC
1 GAGGTTTTGCTTTACC
67159708 GAGGTTTTGCTTTACC
1 GAGGTTTTGCTTTACC
67159724 TATTTTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.19, G:0.25, T:0.44
Consensus pattern (16 bp):
GAGGTTTTGCTTTACC
Found at i:67161803 original size:26 final size:24
Alignment explanation
Indices: 67161765--67161830 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
67161755 GACTCAGTGC
* *
67161765 AGCTCGTATGAGCTTATTGATATATT
1 AGCTCATAAGAGCTTATTG-T-TATT
*
67161791 AGCTCATAAGAGCTTATTGTTCTT
1 AGCTCATAAGAGCTTATTGTTATT
* *
67161815 AACTCATCAGAGCTTA
1 AGCTCATAAGAGCTTA
67161831 CAATTTCCAG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
24 17 0.49
25 1 0.03
26 17 0.49
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.38
Consensus pattern (24 bp):
AGCTCATAAGAGCTTATTGTTATT
Found at i:67161826 original size:24 final size:26
Alignment explanation
Indices: 67161774--67161830 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 26
67161764 CAGCTCGTAT
*
67161774 GAGCTTATTGATATATTAGCTCATAA
1 GAGCTTATTGATATATTAACTCATAA
* *
67161800 GAGCTTATTG-T-TCTTAACTCATCA
1 GAGCTTATTGATATATTAACTCATAA
67161824 GAGCTTA
1 GAGCTTA
67161831 CAATTTCCAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 17 0.61
25 1 0.04
26 10 0.36
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.39
Consensus pattern (26 bp):
GAGCTTATTGATATATTAACTCATAA
Found at i:67166984 original size:27 final size:27
Alignment explanation
Indices: 67166946--67167499 Score: 550
Period size: 27 Copynumber: 20.7 Consensus size: 27
67166936 TAATAAAGAG
*
67166946 AAATTACCGAAATA-CCTCCGGTTTGTA
1 AAATTACCGAAATACCCT-CGATTTGTA
* *
67166973 AAATTACCGAAATACCTTCGGTTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
67167000 AAATTACC-AAAAACCCT-AATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
67167025 AAATTATCGAAATACCCTCGATTATG--
1 AAATTACCGAAATACCCTCGATT-TGTA
**
67167051 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
67167078 AAATTATCGAAACACCCTCGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
67167105 AAATTATCGAAACACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * ** *
67167132 AAATTACCAAAACACGATTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
67167159 AAATTACCAAAACACCCTTGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
**
67167186 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
67167213 AAGTT-CTCGAAATACCCTC-AATTGTG
1 AAATTAC-CGAAATACCCTCGATTTGTA
* *
67167239 AAATTACTGAAATATCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
67167266 AAATTACCAAAATGCCCTCGATTTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
67167293 AAATTACTGAAACACCCTCGATTTTTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * * *
67167320 CAATTATCGAAACACCTTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
67167347 AAATTACCGAAACACCCTGGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
67167374 AAATTACC-ATAATACCCTCGATTTGTA
1 AAATTACCGA-AATACCCTCGATTTGTA
* *
67167401 AAATTACCAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
67167428 AAATTATCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
67167455 AAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
67167482 AAATGACCGACATACCCT
1 AAATTACCGAAATACCCT
67167500 TGTAGGGTAA
Statistics
Matches: 447, Mismatches: 68, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
25 15 0.03
26 59 0.13
27 368 0.82
28 5 0.01
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:67167500 original size:27 final size:27
Alignment explanation
Indices: 67167451--67167512 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
67167441 ACCCTCGATT
* *
67167451 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
*
67167478 TGTAAAATGACCGACATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
*
67167505 GGTAAAAT
1 TGTAAAAT
67167513 AACTGTTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCTTGTAG
Found at i:67181359 original size:23 final size:23
Alignment explanation
Indices: 67181327--67181386 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
67181317 TGTCCCAAAA
*
67181327 CACATGGGCGTGTGCATTGCCTC
1 CACACGGGCGTGTGCATTGCCTC
*
67181350 TACACGGGCGTGTGCATTGCCTC
1 CACACGGGCGTGTGCATTGCCTC
67181373 CACACGGGCGTGTG
1 CACACGGGCGTGTG
67181387 AGGCTTATCC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.13, C:0.30, G:0.33, T:0.23
Consensus pattern (23 bp):
CACACGGGCGTGTGCATTGCCTC
Found at i:67187465 original size:40 final size:40
Alignment explanation
Indices: 67187408--67187639 Score: 306
Period size: 40 Copynumber: 5.8 Consensus size: 40
67187398 TGGATGATAA
* ** * *
67187408 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
67187448 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
*
67187489 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
67187528 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * * *
67187568 CCGGGCTAAGTCCCAAAGGAAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* * *
67187608 CCGGGCTATGTCCTGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67187640 AGTTATATCC
Statistics
Matches: 170, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.02
40 160 0.94
41 6 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:67189839 original size:64 final size:64
Alignment explanation
Indices: 67189740--67189877 Score: 222
Period size: 64 Copynumber: 2.2 Consensus size: 64
67189730 CACACATGCA
* * * *
67189740 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATACG
1 ACCTAGCTACATATATCCCATAGCTCTCTTATCTACATGGTGTACACATAGTATCACCCATACG
* *
67189804 ATCTAGCTACATATATCCCATAGCTCTCTTATCTACATGGTGTACACATAGTATCACCCATGCG
1 ACCTAGCTACATATATCCCATAGCTCTCTTATCTACATGGTGTACACATAGTATCACCCATACG
67189868 ACCTAGCTAC
1 ACCTAGCTAC
67189878 CTCATAATGT
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (64 bp):
ACCTAGCTACATATATCCCATAGCTCTCTTATCTACATGGTGTACACATAGTATCACCCATACG
Found at i:67193298 original size:28 final size:28
Alignment explanation
Indices: 67193240--67193342 Score: 134
Period size: 28 Copynumber: 3.7 Consensus size: 28
67193230 ATTGCATGAC
* *
67193240 TATGAATGTGATTGGGCCAGACGTGCCA
1 TATGAATGTGATTGGGCCTGACGGGCCA
* * * *
67193268 TATAAAAGTGATTGGGCCTGATGGGCTA
1 TATGAATGTGATTGGGCCTGACGGGCCA
* *
67193296 TATGAATGTGATTAGGCCTGAGGGGCCA
1 TATGAATGTGATTGGGCCTGACGGGCCA
67193324 TATGAATGTGATTGGGCCT
1 TATGAATGTGATTGGGCCT
67193343 AAAGGGGCCA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGACGGGCCA
Found at i:67196758 original size:6 final size:6
Alignment explanation
Indices: 67196728--67196846 Score: 57
Period size: 6 Copynumber: 19.3 Consensus size: 6
67196718 AAGAAACATT
* * *
67196728 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * * *
67196777 ATCAAA ATCAAA ATTAGA ATTAG- GTGACAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A
*
67196828 A-CAGA ATTAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
67196847 GTGAATGCAA
Statistics
Matches: 86, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
5 5 0.06
6 69 0.80
7 9 0.10
8 3 0.03
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:67196785 original size:25 final size:25
Alignment explanation
Indices: 67196749--67196846 Score: 97
Period size: 25 Copynumber: 3.7 Consensus size: 25
67196739 AATCAAAATG
67196749 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* *
67196774 AGAATCAAAATCAAAATTAGAATTAGGTGAC
1 AGAATCAGAATC------AGAATCAGGTGAC
* *
67196805 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
67196830 AGAATTAGAATCAGAAT
1 AGAATCAGAATCAGAAT
67196847 GTGAATGCAA
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
25 36 0.61
31 23 0.39
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:67196796 original size:31 final size:31
Alignment explanation
Indices: 67196751--67196817 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
67196741 TCAAAATGAG
*
67196751 AATCAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAAAATCAGAATCAGGTGACAGAATCAA
* * *
67196782 AATCAAAATTAGAATTAGGTGACAGAATCAG
1 AATCAAAATCAGAATCAGGTGACAGAATCAA
67196813 AATCA
1 AATCA
67196818 GTATCAGGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.19
Consensus pattern (31 bp):
AATCAAAATCAGAATCAGGTGACAGAATCAA
Found at i:67196993 original size:26 final size:26
Alignment explanation
Indices: 67196964--67197043 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
67196954 AGCATGGCTG
* *
67196964 CCAGAACAGATACTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGGCAAAGCCA
* * *
67196990 CCAGAACAGATATTTGTGGCATAGCTA
1 CCAGAACAGATA-ATGTGGCAAAGCCA
67197017 CCAGAAACAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATAATGTGGCAAAGCCA
67197044 TTTAACAGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 12 0.26
27 26 0.57
28 8 0.17
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAAAGCCA
Found at i:67197019 original size:27 final size:26
Alignment explanation
Indices: 67196955--67197037 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
67196945 AGGATTTGCA
* * *
67196955 GCATGGCTGCCAGAACAGATACTGTG
1 GCATAGCTACCAGAACAGATAATGTG
* * *
67196981 GCAGAGCCACCAGAACAGATATTTGTG
1 GCATAGCTACCAGAACAGATA-ATGTG
67197008 GCATAGCTACCAGAAACAGATAATGTG
1 GCATAGCTACCAG-AACAGATAATGTG
67197035 GCA
1 GCA
67197038 AAGCCATTTA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 17 0.36
27 22 0.47
28 8 0.17
ACGTcount: A:0.34, C:0.22, G:0.27, T:0.18
Consensus pattern (26 bp):
GCATAGCTACCAGAACAGATAATGTG
Found at i:67197197 original size:27 final size:27
Alignment explanation
Indices: 67197167--67197218 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
67197157 AGTCATCAGC
*
67197167 AAATATGTTAGGCAC-ATAGCCATAGGT
1 AAATACGTTAGGCACGA-AGCCATAGGT
*
67197194 AAATACGTTTGGCACGAAGCCATAG
1 AAATACGTTAGGCACGAAGCCATAG
67197219 TCAAGATGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (27 bp):
AAATACGTTAGGCACGAAGCCATAGGT
Found at i:67197738 original size:27 final size:26
Alignment explanation
Indices: 67197708--67197804 Score: 88
Period size: 27 Copynumber: 3.6 Consensus size: 26
67197698 TACCCCACAG
* *
67197708 GGGTATCTCAGTAATTCTACCTTACAT
1 GGGTATTTCAGTAATTCTACC-TACAA
* * *
67197735 GGGTATTTCGGTATTTCTATGCTACAA
1 GGGTATTTCAGTAATTCTA-CCTACAA
*
67197762 GGGTATTTC-GATAATTCTACCCTACAG
1 GGGTATTTCAG-TAATTCTA-CCTACAA
*
67197789 GGGTATTTTAGTAATT
1 GGGTATTTCAGTAATT
67197805 TTGTAAAACG
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.02
27 54 0.95
28 2 0.04
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (26 bp):
GGGTATTTCAGTAATTCTACCTACAA
Found at i:67197872 original size:27 final size:27
Alignment explanation
Indices: 67197841--67197944 Score: 88
Period size: 27 Copynumber: 3.9 Consensus size: 27
67197831 TCTATAAATT
*
67197841 AGGGTACTTTG-GAAATTTTACAAGTCG
1 AGGGTA-TTTGAGAAATTTTACAAGTCA
* *
67197868 AGGGTATTTGAGTAATTTTACAGGTCA
1 AGGGTATTTGAGAAATTTTACAAGTCA
* * *
67197895 AGGGTATTTCA-ATAATTTCACAAATCA
1 AGGGTATTTGAGA-AATTTTACAAGTCA
* *
67197922 GGGGTATTTTGA-TAATTTTACAA
1 AGGGTA-TTTGAGAAATTTTACAA
67197945 ACTAGGGGTA
Statistics
Matches: 62, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
26 4 0.06
27 54 0.87
28 4 0.06
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.37
Consensus pattern (27 bp):
AGGGTATTTGAGAAATTTTACAAGTCA
Found at i:67197945 original size:27 final size:27
Alignment explanation
Indices: 67197854--67198021 Score: 155
Period size: 27 Copynumber: 6.2 Consensus size: 27
67197844 GTACTTTGGA
*
67197854 AATTTTACAAGTC-GAGGGTA-TTTGAGT
1 AATTTTACAAATCAG-GGGTATTTTGA-T
** * **
67197881 AATTTTACAGGTCAAGGGTATTTCAAT
1 AATTTTACAAATCAGGGGTATTTTGAT
*
67197908 AATTTCACAAATCAGGGGTATTTTGAT
1 AATTTTACAAATCAGGGGTATTTTGAT
67197935 AATTTTACAAA-CTAGGGGTATTTTGAT
1 AATTTTACAAATC-AGGGGTATTTTGAT
* *
67197962 AATTTTACAAACCAGGGGTATTTTGGT
1 AATTTTACAAATCAGGGGTATTTTGAT
* * * *
67197989 AATTTTGCTAAT-TGAGGGTATTTTGGT
1 AATTTTACAAATCAG-GGGTATTTTGAT
67198016 AATTTT
1 AATTTT
67198022 GCTAATCGAG
Statistics
Matches: 120, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.02
27 114 0.95
28 4 0.03
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AATTTTACAAATCAGGGGTATTTTGAT
Found at i:67198022 original size:27 final size:27
Alignment explanation
Indices: 67197923--67198037 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 27
67197913 CACAAATCAG
* * * *
67197923 GGGTATTTTGATAATTTTAC-AAACTA
1 GGGTATTTTGGTAATTTTGCTAATCGA
* * * *
67197949 GGGGTATTTTGATAATTTTAC-AAACCA
1 -GGGTATTTTGGTAATTTTGCTAATCGA
*
67197976 GGGGTATTTTGGTAATTTTGCTAATTGA
1 -GGGTATTTTGGTAATTTTGCTAATCGA
67198004 GGGTATTTTGGTAATTTTGCTAATCGA
1 GGGTATTTTGGTAATTTTGCTAATCGA
67198031 GGGTATT
1 GGGTATT
67198038 CAGTAATTTT
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 77 0.96
28 3 0.04
ACGTcount: A:0.27, C:0.07, G:0.23, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGCTAATCGA
Found at i:67198062 original size:26 final size:25
Alignment explanation
Indices: 67198033--67198090 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 25
67198023 CTAATCGAGG
*
67198033 GTATTCAGTAATTTTGTAAACCAAGA
1 GTATTCAGTAATTTGGTAAACCAA-A
* *
67198059 GTATTTTAGTAATTTGGTAAACTAAA
1 GTA-TTCAGTAATTTGGTAAACCAAA
67198085 GTATTC
1 GTATTC
67198091 TAAACAGGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 2 0.07
26 7 0.26
27 18 0.67
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.40
Consensus pattern (25 bp):
GTATTCAGTAATTTGGTAAACCAAA
Found at i:67198078 original size:27 final size:26
Alignment explanation
Indices: 67198039--67198089 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
67198029 GAGGGTATTC
*
67198039 AGTAATTTTGTAAACCAAGAGTATTTT
1 AGTAATTTGGTAAACCAA-AGTATTTT
*
67198066 AGTAATTTGGTAAACTAAAGTATT
1 AGTAATTTGGTAAACCAAAGTATT
67198090 CTAAACAGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (26 bp):
AGTAATTTGGTAAACCAAAGTATTTT
Found at i:67209289 original size:32 final size:32
Alignment explanation
Indices: 67209245--67209338 Score: 84
Period size: 32 Copynumber: 2.8 Consensus size: 32
67209235 TCAAGCCCAT
*
67209245 TGGGCCTAAGCCC-ATTCAGATAACAGTGATAC
1 TGGGCC-AAGCCCTATTCAGATAACAGTGAAAC
* * *
67209277 TGGGCCAGAGCCCTTTTCAGATTACA-TTAAAC
1 TGGGCCA-AGCCCTATTCAGATAACAGTGAAAC
*
67209309 TGGGCCTTAGCCCCTTATTCAGATAACAGT
1 TGGGCC-AAG-CCC-TATTCAGATAACAGT
67209339 ATGGCCCATA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
31 1 0.02
32 23 0.47
33 13 0.27
34 11 0.22
35 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (32 bp):
TGGGCCAAGCCCTATTCAGATAACAGTGAAAC
Found at i:67209657 original size:26 final size:26
Alignment explanation
Indices: 67209611--67209663 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
67209601 TCAAACATGC
*
67209611 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
67209637 ATTTCGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
67209663 A
1 A
67209664 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:67215668 original size:47 final size:47
Alignment explanation
Indices: 67215599--67215692 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
67215589 CGTCCCGCAG
67215599 TAAGGACACTGCCCCTTTTAACTTTTGCTCCACTAAGCAGTCTAGGT
1 TAAGGACACTGCCCCTTTTAACTTTTGCTCCACTAAGCAGTCTAGGT
*
67215646 TAAGGACACTGCCCCTTTTAACTTTTGCTCCACTGAGCAGTCTAGGT
1 TAAGGACACTGCCCCTTTTAACTTTTGCTCCACTAAGCAGTCTAGGT
67215693 CATCCATAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (47 bp):
TAAGGACACTGCCCCTTTTAACTTTTGCTCCACTAAGCAGTCTAGGT
Found at i:67226621 original size:40 final size:40
Alignment explanation
Indices: 67226547--67226767 Score: 270
Period size: 40 Copynumber: 5.6 Consensus size: 40
67226537 AACCCAAGTA
* * *
67226547 CCTTCGGGATTTAG-CCAGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
67226586 CCTTCGGGTCTTAGCACGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * **
67226626 CCTTTGGGACTTAGCCCGGATATAG-CAACTCGCACAAACA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
67226666 CCTTCGGGACTTAGTCCGGATATAGTCAATAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
67226706 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
67226745 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
67226768 CATCCGAATA
Statistics
Matches: 155, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
39 38 0.25
40 115 0.74
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:67234193 original size:28 final size:27
Alignment explanation
Indices: 67234132--67234195 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 27
67234122 ATTTACTAAA
* *
67234132 ATACCCCTAAGTATGACAATTACCATT
1 ATACCCCTAAGTATGAAAATGACCATT
67234159 ATACCCCTAAGTATGCAAAATGACCATT
1 ATACCCCTAAGTATG-AAAATGACCATT
67234187 ATACCCCTA
1 ATACCCCTA
67234196 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 15 0.44
28 19 0.56
ACGTcount: A:0.38, C:0.28, G:0.08, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGTATGAAAATGACCATT
Found at i:67234335 original size:28 final size:26
Alignment explanation
Indices: 67234298--67234413 Score: 160
Period size: 27 Copynumber: 4.3 Consensus size: 26
67234288 ATGGAGGAAG
67234298 TGTTCTGGTGGCTATGCCACAATTATC
1 TGTTCTGGTGGCTATGCCACAA-TATC
67234325 TGTTTCTGGTGGCTATGCCACAGATATC
1 TG-TTCTGGTGGCTATGCCACA-ATATC
*
67234353 TGTTCTGGTGGCTCTGCCACAATATC
1 TGTTCTGGTGGCTATGCCACAATATC
* * *
67234379 TGTATCTGGTGACTCTGTCACAATATC
1 TGT-TCTGGTGGCTATGCCACAATATC
67234406 TGTTCTGG
1 TGTTCTGG
67234414 CAGCCATGCT
Statistics
Matches: 83, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
26 13 0.16
27 44 0.53
28 25 0.30
29 1 0.01
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.37
Consensus pattern (26 bp):
TGTTCTGGTGGCTATGCCACAATATC
Found at i:67254566 original size:42 final size:42
Alignment explanation
Indices: 67254504--67254659 Score: 188
Period size: 42 Copynumber: 3.7 Consensus size: 42
67254494 ACTAAGACTA
* * *
67254504 CGTGTAATACCATATTTGGGATATGGCATCAATATGAGATTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
* * *
67254546 TGTGTAAGACTATATCTGGGATATGGCATCGATATGAGACTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
* * * *
67254588 CGTGTAAGACCATAGCT-AGACTATTGGCATCGATACGAGATTA
1 CGTGTAAGACCATATCTGGGA-TA-TGGCATCGATATGAGATTT
*
67254631 CATGTAAGACCATATCTGGGATATGGCAT
1 CGTGTAAGACCATATCTGGGATATGGCAT
67254660 TGGTACGGTA
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.02
42 58 0.61
43 33 0.35
44 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
Found at i:67263765 original size:79 final size:82
Alignment explanation
Indices: 67263654--67263838 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
67263644 GCTACTCGTT
* *
67263654 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
67263717 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
67263734 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
67263797 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
67263814 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67263839 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:67263838 original size:40 final size:40
Alignment explanation
Indices: 67263635--67263838 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
67263625 CGGAATTTAA
** *
67263635 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67263675 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
67263715 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67263754 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
67263794 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
67263834 CCGGA
1 CCGGA
67263839 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67266545 original size:43 final size:43
Alignment explanation
Indices: 67266462--67266593 Score: 113
Period size: 45 Copynumber: 3.0 Consensus size: 43
67266452 ATATCGAACA
* * * * ** * *
67266462 ATGCCAACGTCCCAAACTTGGTCTTACATGCTATCTCATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACATATCG
*
67266505 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAAACACATATATCG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGAAAACAC--ATATCG
* * * *
67266550 ATTCCAATGTCCCAGACGTGGTCTTTCACGTAAGCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACATATCG
67266593 A
1 A
67266594 AATCCTACGG
Statistics
Matches: 71, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
43 34 0.48
44 1 0.01
45 36 0.51
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACATATCG
Found at i:67266562 original size:45 final size:45
Alignment explanation
Indices: 67266499--67266590 Score: 123
Period size: 45 Copynumber: 2.0 Consensus size: 45
67266489 ATGCTATCTC
*
67266499 ATATCGATGCCACTGTCCCAGACAG-GGTCTTACACGAAAACACAT
1 ATATCGATGCCAATGTCCCAGAC-GTGGTCTTACACGAAAACACAT
* * * *
67266544 ATATCGATTCCAATGTCCCAGACGTGGTCTTTCACGTAAGCACAT
1 ATATCGATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACAT
67266589 AT
1 AT
67266591 CGAAATCCTA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
44 1 0.02
45 40 0.98
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (45 bp):
ATATCGATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACAT
Found at i:67269404 original size:15 final size:15
Alignment explanation
Indices: 67269381--67269411 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
67269371 TCAAAAATTC
67269381 CAATACAAAACATAT
1 CAATACAAAACATAT
*
67269396 CAATCCAAAACATAT
1 CAATACAAAACATAT
67269411 C
1 C
67269412 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:67283686 original size:24 final size:24
Alignment explanation
Indices: 67283650--67283697 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
67283640 AAACATATTA
* *
67283650 AATGTCTATTCAAATGACTTATGT
1 AATGTCTACTCAAATGAATTATGT
67283674 AATGTCTACTCAAATGAATTATGT
1 AATGTCTACTCAAATGAATTATGT
67283698 GCAGACTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (24 bp):
AATGTCTACTCAAATGAATTATGT
Found at i:67300884 original size:43 final size:43
Alignment explanation
Indices: 67300794--67300933 Score: 160
Period size: 43 Copynumber: 3.3 Consensus size: 43
67300784 TGTGATTATG
*
67300794 TGTAAGACCATGTCTAGAACATTGGCATCATT-T-TGCAATTACA
1 TGTAAGACCATGTCTAGGACATTGGCATCATTATATG--ATTACA
* * *
67300837 TGTAAGACCATGCCTAGGACATTGGCAT-AGTTATATGATTTCG
1 TGTAAGACCATGTCTAGGACATTGGCATCA-TTATATGATTACA
* * * *
67300880 TGTAAGACCATGTTTGGGACATTGGCATCAATATATGATAACA
1 TGTAAGACCATGTCTAGGACATTGGCATCATTATATGATTACA
67300923 TGTAAGACCAT
1 TGTAAGACCAT
67300934 ATCTGGGTTA
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
42 1 0.01
43 77 0.94
44 2 0.02
45 2 0.02
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACATTGGCATCATTATATGATTACA
Found at i:67307942 original size:27 final size:27
Alignment explanation
Indices: 67307875--67307942 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
67307865 GTTATACATA
* * *
67307875 TCATAGGGGTATATCAATCATTTTACC
1 TCATAGAGGTATAACAATCACTTTACC
*
67307902 TCATA-AGGGCATAACAATCACTTTACC
1 TCATAGA-GGTATAACAATCACTTTACC
67307929 TCATAGAGGTATAA
1 TCATAGAGGTATAA
67307943 TAGTTATTTC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (27 bp):
TCATAGAGGTATAACAATCACTTTACC
Found at i:67310499 original size:86 final size:84
Alignment explanation
Indices: 67310386--67310559 Score: 269
Period size: 86 Copynumber: 2.0 Consensus size: 84
67310376 AACTTTATCC
* *
67310386 TATATTTCTGAAATCAATTCAGGACCCAG-ATCACGCCACTCACCCAACTCAGTCCCACACGAAG
1 TATATTTCTGAAATCAATTCACGACCCAGAAT-ACGCCACTCACCCAACTCAGTCCAACACGAAG
* *
67310450 GAGTATGACACCTATGACCA
65 GAGTACGACACCTACGACCA
*
67310470 TATATTTCCTCGAAATCAATTCACGACCCAGAATATGCCACTCACCCAACTCAGTCCAACACGAA
1 TATATTT-CT-GAAATCAATTCACGACCCAGAATACGCCACTCACCCAACTCAGTCCAACACGAA
67310535 GGAGTACGACACCTACGACCA
64 GGAGTACGACACCTACGACCA
67310556 TATA
1 TATA
67310560 GTGCCTTGTA
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
84 7 0.09
85 2 0.02
86 71 0.87
87 2 0.02
ACGTcount: A:0.34, C:0.32, G:0.13, T:0.20
Consensus pattern (84 bp):
TATATTTCTGAAATCAATTCACGACCCAGAATACGCCACTCACCCAACTCAGTCCAACACGAAGG
AGTACGACACCTACGACCA
Found at i:67315569 original size:46 final size:46
Alignment explanation
Indices: 67315422--67315682 Score: 176
Period size: 46 Copynumber: 5.6 Consensus size: 46
67315412 TATTTGTGCA
* * **
67315422 CCAGTGCAAGACATGTCTGGGACATGCATCGACCACATTATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGACCTCAAGATGAGAG
* * * * ** *
67315468 CTAGTGTAAGACCATGTCTTGGAAATGGCATC-AGCATTGAGACGAGAG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGA-CCTCAAGATGAGAG
** *
67315516 CTGGTGTAAGACATGTCTAGGACATGCATCGACCTCAAGATGTA-AG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGACCTCAAGATG-AGAG
* *
67315562 CCAGTGTAAGACATGTCTGGGACATGCATCG-GCTACAAGAT-A-TG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGACCT-CAAGATGAGAG
** * * *
67315606 TTAGTGCAAGACCATGTCTGGGACATGGCATCGACATGGATATG-TGAGAG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCT-CA-A-GATGAGAG
67315656 CCAGTGTAAGACCATGT-TAGGGACATG
1 CCAGTGTAAGA-CATGTCT-GGGACATG
67315683 TTGTCGGCCT
Statistics
Matches: 167, Mismatches: 34, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
44 10 0.06
45 16 0.10
46 62 0.37
47 29 0.17
48 24 0.14
49 4 0.02
50 22 0.13
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGACCTCAAGATGAGAG
Found at i:67321050 original size:27 final size:27
Alignment explanation
Indices: 67320990--67321051 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
67320980 CATACATATC
*
67320990 ATAGGGGTATAACAGTCACTTTACCAC
1 ATAGGGGTATAACAGTCACTTTACCAA
* *
67321017 ATAGGGGTATAATAGTCA-TTTCATCAA
1 ATAGGGGTATAACAGTCACTTT-ACCAA
*
67321044 ATTGGGGT
1 ATAGGGGT
67321052 CTAGGTATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.10
27 27 0.90
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.31
Consensus pattern (27 bp):
ATAGGGGTATAACAGTCACTTTACCAA
Found at i:67326599 original size:15 final size:14
Alignment explanation
Indices: 67326578--67326616 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
67326568 GTAAAATGTT
*
67326578 AATAATAAAAATAA
1 AATAATAAAAAGAA
*
67326592 GATAAATAAAAAGAA
1 AAT-AATAAAAAGAA
67326607 AATAATAAAA
1 AATAATAAAA
67326617 TGGTGTCCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (14 bp):
AATAATAAAAAGAA
Found at i:67339481 original size:22 final size:22
Alignment explanation
Indices: 67339454--67339503 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
67339444 ATCAACATAT
67339454 CATAAACAACACAACAATTATG
1 CATAAACAACACAACAATTATG
* *
67339476 TATAAACAACATAACAATTATG
1 CATAAACAACACAACAATTATG
67339498 CATAAA
1 CATAAA
67339504 ATCAAGCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.56, C:0.18, G:0.04, T:0.22
Consensus pattern (22 bp):
CATAAACAACACAACAATTATG
Found at i:67342069 original size:96 final size:96
Alignment explanation
Indices: 67341905--67342094 Score: 274
Period size: 96 Copynumber: 2.0 Consensus size: 96
67341895 GTGCCTGAGG
* * * * *
67341905 AAGTCTGTCATCAATGGAAATGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCAGTCATCAAAGGAAATGATAGAGCAGACAAGAAGCCCAAGAAGCTTGGTTCAAGCAAGGG
*
67341970 -AAAAGCTAAAGCCAAGAGGGCAAAGAGGAAC
66 AAAAATC-AAAGCCAAGAGGGCAAAGAGGAAC
* *
67342001 AAGTCAGTCATCAAAGGGAATGATAGAGTAGACAAGAAGCCCAAGAAGCTTGGTTCAAGCAAGGG
1 AAGTCAGTCATCAAAGGAAATGATAGAGCAGACAAGAAGCCCAAGAAGCTTGGTTCAAGCAAGGG
* *
67342066 AAAAATCGAAGCCAAGAGGGTAAAGAGGA
66 AAAAATCAAAGCCAAGAGGGCAAAGAGGA
67342095 GCAAAAAGAA
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 78 0.94
97 5 0.06
ACGTcount: A:0.42, C:0.15, G:0.31, T:0.13
Consensus pattern (96 bp):
AAGTCAGTCATCAAAGGAAATGATAGAGCAGACAAGAAGCCCAAGAAGCTTGGTTCAAGCAAGGG
AAAAATCAAAGCCAAGAGGGCAAAGAGGAAC
Found at i:67349516 original size:4 final size:4
Alignment explanation
Indices: 67349507--67349539 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
67349497 AAGATGTGAT
67349507 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
67349540 GATTCATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:67361989 original size:384 final size:384
Alignment explanation
Indices: 67361268--67362039 Score: 1490
Period size: 384 Copynumber: 2.0 Consensus size: 384
67361258 AGGCTTCATT
67361268 CCTCAACAGTGATACTGCACCTTTAAATTTTTGCTCAAAGGTGCAGTCGAGGTTGTCCATGATCC
1 CCTCAACAGTGATACTGCACCTTTAAATTTTTGCTCAAAGGTGCAGTCGAGGTTGTCCATGATCC
*
67361333 TATCTGTAGGATCGATCCAATATTCAGCCACATTAGGGGCAACTCTAGTACTACCCCGAAAATCT
66 TATCTGTAGGATCGATCCAATATTCAGCCACATTAGGGGCAACTCTAGTAATACCCCGAAAATCT
67361398 CTGCCCTATTAGATCTGAGTCATTCCGTAATTGACCCACGGCCCACATTACCAGTACCAGGCCTA
131 CTGCCCTATTAGATCTGAGTCATTCCGTAATTGACCCACGGCCCACATTACCAGTACCAGGCCTA
*
67361463 GCAACCTTTTCCAGAATCCTCAACATTGCCTGGGACAGTACGTTGTCCCTAGCTACTCGATTTTG
196 GCAACCTTTTCCAGAATCCTCAACATTGCCTAGGACAGTACGTTGTCCCTAGCTACTCGATTTTG
67361528 TGACCTAGTCTCAACCATAGGTGAAGCTGGTGCCTCTCTAACTTCTTCGTTAGGCTAGTGTCCAG
261 TGACCTAGTCTCAACCATAGGTGAAGCTGGTGCCTCTCTAACTTCTTCGTTAGGCTAGTGTCCAG
67361593 AAGACAAAGACCCAGCCCTGGCACCTCCACGGCCTCTGCCACGGCCTCTACCACGAGTA
326 AAGACAAAGACCCAGCCCTGGCACCTCCACGGCCTCTGCCACGGCCTCTACCACGAGTA
* *
67361652 CCTCAATAGTGATACTGCACCTTTAAATTTTTGCTCAGAGGTGCAGTCGAGGTTGTCCATGATCC
1 CCTCAACAGTGATACTGCACCTTTAAATTTTTGCTCAAAGGTGCAGTCGAGGTTGTCCATGATCC
67361717 TATCTGTAGGATCGATCCAATATTCAGCCACATTAGGGGCAACTCTAGTAATACCCCGAAAATCT
66 TATCTGTAGGATCGATCCAATATTCAGCCACATTAGGGGCAACTCTAGTAATACCCCGAAAATCT
*
67361782 CTGCCGTATTAGATCTGAGTCATTCCGTAATTGACCCACGGCCCACATTACCAGTACCAGGCCTA
131 CTGCCCTATTAGATCTGAGTCATTCCGTAATTGACCCACGGCCCACATTACCAGTACCAGGCCTA
67361847 GCAACCTTTTCCAGAATCCTCAACATTGCCTAGGACAGTACGTTGTCCCTAGCTACTCGATTTTG
196 GCAACCTTTTCCAGAATCCTCAACATTGCCTAGGACAGTACGTTGTCCCTAGCTACTCGATTTTG
67361912 TGACCTAGTCTCAACCATAGGTGAAGCTGGTGCCTCTCTAACTTCTTCGTTAGGCTAGTGTCCAG
261 TGACCTAGTCTCAACCATAGGTGAAGCTGGTGCCTCTCTAACTTCTTCGTTAGGCTAGTGTCCAG
*
67361977 AAGACGAAGACCCAGCCCTGGCACCTCCACGGCCTCTGCCACGGCCTCTACCACGAGTA
326 AAGACAAAGACCCAGCCCTGGCACCTCCACGGCCTCTGCCACGGCCTCTACCACGAGTA
67362036 CCTC
1 CCTC
67362040 TAGTGCTTAT
Statistics
Matches: 382, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
384 382 1.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (384 bp):
CCTCAACAGTGATACTGCACCTTTAAATTTTTGCTCAAAGGTGCAGTCGAGGTTGTCCATGATCC
TATCTGTAGGATCGATCCAATATTCAGCCACATTAGGGGCAACTCTAGTAATACCCCGAAAATCT
CTGCCCTATTAGATCTGAGTCATTCCGTAATTGACCCACGGCCCACATTACCAGTACCAGGCCTA
GCAACCTTTTCCAGAATCCTCAACATTGCCTAGGACAGTACGTTGTCCCTAGCTACTCGATTTTG
TGACCTAGTCTCAACCATAGGTGAAGCTGGTGCCTCTCTAACTTCTTCGTTAGGCTAGTGTCCAG
AAGACAAAGACCCAGCCCTGGCACCTCCACGGCCTCTGCCACGGCCTCTACCACGAGTA
Found at i:67366837 original size:38 final size:38
Alignment explanation
Indices: 67366786--67366859 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
67366776 TGGCTAGTAG
* *
67366786 ACACGCCCTTGTCTTAGACCATGTGAAAATAAGGCAAA
1 ACACGCCCATGTCTTAGACCACGTGAAAATAAGGCAAA
* *
67366824 ACACGCCCATGTCTTAGACCGCGTGAAAATAGGGCA
1 ACACGCCCATGTCTTAGACCACGTGAAAATAAGGCA
67366860 TAAATACTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.34, C:0.26, G:0.22, T:0.19
Consensus pattern (38 bp):
ACACGCCCATGTCTTAGACCACGTGAAAATAAGGCAAA
Found at i:67368176 original size:23 final size:23
Alignment explanation
Indices: 67368147--67368270 Score: 128
Period size: 23 Copynumber: 5.4 Consensus size: 23
67368137 GCTGAAGAAC
*
67368147 AGTAAGCTCTATTGAGCTGAATT
1 AGTAAGCTCTATTGAGCTGAAAT
*
67368170 AGTAAGCTCTATTAAGCTGAAACT
1 AGTAAGCTCTATTGAGCTGAAA-T
*
67368194 -GTAAGCTCTATCGAGCT-AAAT
1 AGTAAGCTCTATTGAGCTGAAAT
* *
67368215 AGTAAGCTC-ATACGAGCTGAAAC
1 AGTAAGCTCTAT-TGAGCTGAAAT
* * * *
67368238 GGTAAGCTCCAATGAGCTAAAAT
1 AGTAAGCTCTATTGAGCTGAAAT
67368261 AGTAAGCTCT
1 AGTAAGCTCT
67368271 TATGAACTGA
Statistics
Matches: 84, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
21 3 0.04
22 17 0.20
23 62 0.74
24 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (23 bp):
AGTAAGCTCTATTGAGCTGAAAT
Found at i:67368233 original size:45 final size:45
Alignment explanation
Indices: 67368134--67368296 Score: 145
Period size: 46 Copynumber: 3.5 Consensus size: 45
67368124 AGGCTTCTCC
* * *
67368134 TAAGCTGAAGAACAGTAAGCTCTATTGAGCTGAATTAGTAAGCTCTAT
1 TAAGCTG-A-AACGGTAAGCTCTA-TGAGCTAAAATAGTAAGCTCTAT
*
67368182 TAAGCTGAAACTGTAAGCTCTATCGAGCT-AAATAGTAAGCTC-A-
1 TAAGCTGAAACGGTAAGCTCTAT-GAGCTAAAATAGTAAGCTCTAT
*
67368225 TACGAGCTGAAACGGTAAGCTCCAATGAGCTAAAATAGTAAGCTCTTAT
1 TA--AGCTGAAACGGTAAGCT-CTATGAGCTAAAATAGTAAGCTC-TAT
*
67368274 GAA-CTGATATATCGGTAAGCTCT
1 TAAGCTGA-A-A-CGGTAAGCTCT
67368297 TACGAGCTGT
Statistics
Matches: 98, Mismatches: 6, Indels: 22
0.78 0.05 0.17
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 34 0.35
46 38 0.39
47 3 0.03
48 10 0.10
49 10 0.10
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (45 bp):
TAAGCTGAAACGGTAAGCTCTATGAGCTAAAATAGTAAGCTCTAT
Found at i:67370198 original size:28 final size:28
Alignment explanation
Indices: 67370155--67370341 Score: 252
Period size: 28 Copynumber: 6.7 Consensus size: 28
67370145 CGGCCCCTTT
*
67370155 AGGCCCAATCACATTCATATGGCCCCTC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
67370183 -GATCCCAGTCACATTCATATGGCCCATC
1 AG-GCCCAATCACATTCATATGGCCCATC
* *
67370211 AGGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
67370239 AGGCCCAATCACATTCATATGGCCCCTC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
67370267 -GATCCCAGTCACATTCATATGGCCCATC
1 AG-GCCCAATCACATTCATATGGCCCATC
* *
67370295 AGGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
67370323 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
67370342 ATCATGCAGT
Statistics
Matches: 138, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
27 2 0.01
28 134 0.97
29 2 0.01
ACGTcount: A:0.25, C:0.36, G:0.15, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:67370281 original size:84 final size:84
Alignment explanation
Indices: 67370155--67370341 Score: 374
Period size: 84 Copynumber: 2.2 Consensus size: 84
67370145 CGGCCCCTTT
67370155 AGGCCCAATCACATTCATATGGCCCCTCGATCCCAGTCACATTCATATGGCCCATCAGGCCCAAT
1 AGGCCCAATCACATTCATATGGCCCCTCGATCCCAGTCACATTCATATGGCCCATCAGGCCCAAT
67370220 CACTTTCATATGGCCCGTC
66 CACTTTCATATGGCCCGTC
67370239 AGGCCCAATCACATTCATATGGCCCCTCGATCCCAGTCACATTCATATGGCCCATCAGGCCCAAT
1 AGGCCCAATCACATTCATATGGCCCCTCGATCCCAGTCACATTCATATGGCCCATCAGGCCCAAT
67370304 CACTTTCATATGGCCCGTC
66 CACTTTCATATGGCCCGTC
67370323 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
67370342 ATCATGCAGT
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 103 1.00
ACGTcount: A:0.25, C:0.36, G:0.15, T:0.24
Consensus pattern (84 bp):
AGGCCCAATCACATTCATATGGCCCCTCGATCCCAGTCACATTCATATGGCCCATCAGGCCCAAT
CACTTTCATATGGCCCGTC
Found at i:67374947 original size:28 final size:28
Alignment explanation
Indices: 67374906--67375009 Score: 156
Period size: 28 Copynumber: 3.7 Consensus size: 28
67374896 TGGCCCCTTT
* *
67374906 AGGCCCAATCACATTCATATTGCCCCTC
1 AGGCCCAATCACATTCATATGGCCCATC
67374934 -GAGCCCAATCACATTCATATGGCCCATC
1 AG-GCCCAATCACATTCATATGGCCCATC
* *
67374962 AGGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
67374990 AGGCCCAATCACATTCATAT
1 AGGCCCAATCACATTCATAT
67375010 TCATGCAATG
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
27 1 0.01
28 67 0.97
29 1 0.01
ACGTcount: A:0.27, C:0.36, G:0.13, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:67379564 original size:27 final size:27
Alignment explanation
Indices: 67379517--67379711 Score: 187
Period size: 27 Copynumber: 7.2 Consensus size: 27
67379507 GGGCAAAATG
* * * *
67379517 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
67379544 GTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
67379570 GATATTTCAACCCTACAAGGGTATTTC-
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * * *
67379597 GATAATTCTACCTTATAAGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
67379625 GTAATTCTACCTTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
67379652 GTAATTATACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
67379679 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
67379706 GTAATT
1 GTAATT
67379712 TTACAAACCA
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 139 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:67379673 original size:81 final size:81
Alignment explanation
Indices: 67379517--67379711 Score: 232
Period size: 81 Copynumber: 2.4 Consensus size: 81
67379507 GGGCAAAATG
* * * *
67379517 GTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTATAGGGGTATTTCGATATTTCAACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGATAATTCAACC
67379582 CTACAAGGGTATTTCGA
66 CTACAAGGGTATTT-GA
* * * * *
67379599 -TAATTCTACCTTATAAGGGTATTTTAGTAATTCTACCTTATAGGGGTATTTCGGTAATT-ATAC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGATAATTCA-AC
* * *
67379662 CTTACAGGGGTATTTTA
65 CCTACAAGGGTATTTGA
* *
67379679 GTAATTCTACCCTACAGGGGTATTTCGGTAATT
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATT
67379712 TTACAAACCA
Statistics
Matches: 94, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
80 2 0.02
81 92 0.98
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.37
Consensus pattern (81 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGATAATTCAACC
CTACAAGGGTATTTGA
Found at i:67379723 original size:27 final size:27
Alignment explanation
Indices: 67379516--67379736 Score: 131
Period size: 27 Copynumber: 8.2 Consensus size: 27
67379506 AGGGCAAAAT
* ** * *
67379516 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTATACCATACAGGGGTATTTC
* * * *
67379543 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTATACCATACAGGGGTATTTC
* * * *
67379570 GATATTTCA-ACCCTACAAGGGTATTTC
1 GGTAATT-ATACCATACAGGGGTATTTC
* * * * * *
67379597 GATAATTCTACCTTATAAGGGTATTTT
1 GGTAATTATACCATACAGGGGTATTTC
* * * *
67379624 AGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTATACCATACAGGGGTATTTC
* *
67379651 GGTAATTATACCTTACAGGGGTATTTT
1 GGTAATTATACCATACAGGGGTATTTC
* * *
67379678 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTATACCATACAGGGGTATTTC
* * *
67379705 GGTAATTTTA-CAAACCAGGGGTATTTT
1 GGTAATTATACCATA-CAGGGGTATTTC
67379732 GGTAA
1 GGTAA
67379737 ATTTGTTAAT
Statistics
Matches: 157, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
26 2 0.01
27 155 0.99
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTATACCATACAGGGGTATTTC
Found at i:67379724 original size:54 final size:54
Alignment explanation
Indices: 67379517--67379736 Score: 183
Period size: 54 Copynumber: 4.1 Consensus size: 54
67379507 GGGCAAAATG
* * * * * * ** * *
67379517 GTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTATAGGGGTA-TTTC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTATACCAAACAGGGGTATTTTA
* * * * * ** * *
67379570 GATATTTCAACCCTACAAGGGTATTTCGATAATTCTACCTTATAAGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTCGGTAATTATACCAAACAGGGGTATTTTA
* * **
67379625 GTAATTCTACCTTATAGGGGTATTTCGGTAATTATACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTATACCAAACAGGGGTATTTTA
* *
67379679 GTAATTCTACCCTACAGGGGTATTTCGGTAATTTTA-CAAACCAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTATACCAAA-CAGGGGTATTTTA
67379733 GTAA
1 GTAA
67379737 ATTTGTTAAT
Statistics
Matches: 139, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
53 3 0.02
54 132 0.95
55 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTATACCAAACAGGGGTATTTTA
Found at i:67379809 original size:53 final size:54
Alignment explanation
Indices: 67379696--67379819 Score: 171
Period size: 53 Copynumber: 2.3 Consensus size: 54
67379686 TACCCTACAG
* * *
67379696 GGGTATTTCGGTAATTTTACAAACCAGGGGTATTTTGGTAAATTTGTTAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTGGTAAATTTGCTAATCGA
* * *
67379750 GGGTATTTTGGTAATTTTACTAATC-GAAGGTA-TTTGGTAATTTTGCTAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAG-AGGTATTTTGGTAAATTTGCTAATCGA
67379803 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
67379820 GGTAAACTAA
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
53 37 0.59
54 26 0.41
ACGTcount: A:0.26, C:0.07, G:0.24, T:0.43
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAGAGGTATTTTGGTAAATTTGCTAATCGA
Found at i:67379820 original size:26 final size:27
Alignment explanation
Indices: 67379696--67379819 Score: 153
Period size: 27 Copynumber: 4.6 Consensus size: 27
67379686 TACCCTACAG
* * * *
67379696 GGGTATTTCGGTAATTTTAC-AAACCA
1 GGGTATTTTGGTAATTTTGCTAATCGA
* *
67379722 GGGGTATTTTGGTAAATTTGTTAATCGA
1 -GGGTATTTTGGTAATTTTGCTAATCGA
*
67379750 GGGTATTTTGGTAATTTTACTAATCGA
1 GGGTATTTTGGTAATTTTGCTAATCGA
*
67379777 AGGTA-TTTGGTAATTTTGCTAATCGA
1 GGGTATTTTGGTAATTTTGCTAATCGA
67379803 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
67379820 GGTAAACTAA
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 24 0.29
27 55 0.66
28 4 0.05
ACGTcount: A:0.26, C:0.07, G:0.24, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGCTAATCGA
Found at i:67382535 original size:27 final size:27
Alignment explanation
Indices: 67382506--67382674 Score: 196
Period size: 27 Copynumber: 6.3 Consensus size: 27
67382496 GGGGCAAAAT
* * *
67382506 GGTAATTTTACCCCACAAGGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
*
67382533 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
67382560 AGTATTTCTACCCTCCAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
67382587 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
67382614 AGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
67382641 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
67382668 GGTAATT
1 GGTAATT
67382675 TTACAAACCA
Statistics
Matches: 121, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 2 0.02
27 119 0.98
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:67382689 original size:27 final size:27
Alignment explanation
Indices: 67382659--67382756 Score: 135
Period size: 27 Copynumber: 3.6 Consensus size: 27
67382649 TACCCTACAG
* *
67382659 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
67382686 GGGTATTTTGGTAATTTTTCTAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
67382713 -GGTCATTTTGGTAATTTTGCAAATCGA
1 GGGT-ATTTTGGTAATTTTACAAATCGA
67382740 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
67382757 GGTAAACTAA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
26 3 0.05
27 57 0.90
28 3 0.05
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:67382690 original size:54 final size:54
Alignment explanation
Indices: 67382521--67382701 Score: 188
Period size: 54 Copynumber: 3.4 Consensus size: 54
67382511 TTTTACCCCA
* ***
67382521 CAAGGGTATCTT-GGTAATTCTACCCTATAGGGGTATTTCAGT-ATTTCTACCCTC
1 CAAGGGTAT-TTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTT-TACAAAC
* * **
67382575 CAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCTTA-
1 CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTA-CAAAC
* * * **
67382629 TAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACAAAC
*
67382683 CAAGGGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATT
67382702 TTTCTAATCG
Statistics
Matches: 104, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
53 4 0.04
54 96 0.92
55 4 0.04
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACAAAC
Found at i:67382700 original size:81 final size:81
Alignment explanation
Indices: 67382506--67382701 Score: 241
Period size: 81 Copynumber: 2.4 Consensus size: 81
67382496 GGGGCAAAAT
* ** * *
67382506 GGTAATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTATAGGGGTATTTCAGTATTTCTAC
1 GGTAATTCTACCAAACAAGGGTATTTTGGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTAC
*
67382571 CCTCCAAGGGTATTTC
66 CCTACAAGGGTATTTC
** * ** *
67382587 GGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCTTATAGGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCAAACAAGGGTATTTTGGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTAC
* *
67382652 CCTACAGGGGTATTTT
66 CCTACAAGGGTATTTC
*
67382668 GGTAATTTTA-CAAACCAAGGGTATTTTGGTAATT
1 GGTAATTCTACCAAA-CAAGGGTATTTTGGTAATT
67382702 TTTCTAATCG
Statistics
Matches: 96, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
80 2 0.02
81 94 0.98
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (81 bp):
GGTAATTCTACCAAACAAGGGTATTTTGGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTAC
CCTACAAGGGTATTTC
Found at i:67384519 original size:27 final size:27
Alignment explanation
Indices: 67384472--67384629 Score: 192
Period size: 27 Copynumber: 5.9 Consensus size: 27
67384462 GGGCAAAATG
* * * *
67384472 GTAATTTTACCCCACAAGGGTATCTT-G
1 GTAATTCTACCCTACAGGGGTAT-TTCA
*
67384499 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
67384526 GTATTTCTACCCTCCAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
67384553 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
67384580 GTAATTCTACCTTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
67384607 GTAATTCTACCCTACAGGGGTAT
1 GTAATTCTACCCTACAGGGGTAT
67384630 NNNNNNNNNN
Statistics
Matches: 112, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
26 2 0.02
27 110 0.98
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:67385026 original size:19 final size:20
Alignment explanation
Indices: 67384989--67385026 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
67384979 ATAAGTTGGT
67384989 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
67385009 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
67385027 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:67394459 original size:23 final size:23
Alignment explanation
Indices: 67394403--67394451 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
67394393 TTATTGGAGT
67394403 TTACCGTTTCAACTCGATAGAGC
1 TTACCGTTTCAACTCGATAGAGC
*
67394426 TTACCGTTTCAACTCTATAGAGC
1 TTACCGTTTCAACTCGATAGAGC
67394449 TTA
1 TTA
67394452 TTGTTTCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (23 bp):
TTACCGTTTCAACTCGATAGAGC
Found at i:67401978 original size:27 final size:27
Alignment explanation
Indices: 67401974--67402183 Score: 312
Period size: 27 Copynumber: 7.8 Consensus size: 27
67401964 TTATCGTTTG
* * *
67401974 ACCCTTGATTTACAGAATTACCGTTTT
1 ACCCTCGATTTATAGAATTACCATTTT
67402001 ACCCTCGATTTATAGAATTACCATTTT
1 ACCCTCGATTTATAGAATTACCATTTT
67402028 ACCCTCGATTTATAGAATTACCATTTT
1 ACCCTCGATTTATAGAATTACCATTTT
*
67402055 ACCCTCGATTTACAGAATTACCATTTT
1 ACCCTCGATTTATAGAATTACCATTTT
67402082 ACCCTCGATTTATAGAATTACCATTTT
1 ACCCTCGATTTATAGAATTACCATTTT
*
67402109 ACCCTCGATTTATAGAATTACCGTTTT
1 ACCCTCGATTTATAGAATTACCATTTT
* * * *
67402136 ACCCTCAATTTACATAATTACCGTTTT
1 ACCCTCGATTTATAGAATTACCATTTT
* * *
67402163 ACCCTTGATTTACAAAATTAC
1 ACCCTCGATTTATAGAATTAC
67402184 TAAAATACCC
Statistics
Matches: 171, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 171 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
ACCCTCGATTTATAGAATTACCATTTT
Found at i:67402070 original size:81 final size:81
Alignment explanation
Indices: 67401974--67402183 Score: 348
Period size: 81 Copynumber: 2.6 Consensus size: 81
67401964 TTATCGTTTG
*
67401974 ACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTT
1 ACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTT
67402039 ATAGAATTACCATTTT
66 ATAGAATTACCATTTT
*
67402055 ACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTT
1 ACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTT
*
67402120 ATAGAATTACCGTTTT
66 ATAGAATTACCATTTT
* * * * *
67402136 ACCCTCAATTTACATAATTACCGTTTTACCCTTGATTTACAAAATTAC
1 ACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTAC
67402184 TAAAATACCC
Statistics
Matches: 120, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 120 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
ACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTT
ATAGAATTACCATTTT
Found at i:67402193 original size:81 final size:81
Alignment explanation
Indices: 67401928--67402194 Score: 302
Period size: 81 Copynumber: 3.3 Consensus size: 81
67401918 AATACTTTAG
* * * * * * * *
67401928 TTTACCAAATTA-CAGAAATGCCCTCAATTTGTAAAATTATCGTTTGACCCTTGATTTACAGAAT
1 TTTACAAAATTACCA-AAATACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAAT
67401992 TACCGTTTTACCCTCGA
65 TACCGTTTTACCCTCGA
* * *** *
67402009 TTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATT
1 TTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATT
*
67402074 ACCATTTTACCCTCGA
66 ACCGTTTTACCCTCGA
* * *** * *
67402090 TTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACATAATT
1 TTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATT
*
67402155 ACCGTTTTACCCTTGA
66 ACCGTTTTACCCTCGA
*
67402171 TTTACAAAATTACTAAAATACCCT
1 TTTACAAAATTACCAAAATACCCT
67402195 TGGTTTACAA
Statistics
Matches: 159, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
81 157 0.99
82 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (81 bp):
TTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATT
ACCGTTTTACCCTCGA
Found at i:67402337 original size:27 final size:27
Alignment explanation
Indices: 67402162--67402369 Score: 195
Period size: 27 Copynumber: 7.7 Consensus size: 27
67402152 ATTACCGTTT
* ** *
67402162 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCCTGATTTGTAAAATTACCAAAA
* * ** *
67402189 TACCCTTGGTTTACAAAATTGCCAAAA
1 TACCCCTGATTTGTAAAATTACCAAAA
* *
67402216 TA-CCCTCAATTAGTAAAATTACCAAAA
1 TACCCCT-GATTTGTAAAATTACCAAAA
* * *
67402243 TACCGCTGGTTTGTAAAATTACTAAAA
1 TACCCCTGATTTGTAAAATTACCAAAA
*
67402270 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCCTGATTTGTAAAATTACCAAAA
**
67402297 TACCCCTGGCTTGTAAAATTACCAAAA
1 TACCCCTGATTTGTAAAATTACCAAAA
* * *
67402324 TACCCCTGATTTGTGAAATTATCGAAA
1 TACCCCTGATTTGTAAAATTACCAAAA
*
67402351 TA-CTCTCGATTTGTAAAAT
1 TACCCCT-GATTTGTAAAAT
67402370 ATCGAAATAC
Statistics
Matches: 153, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
26 6 0.04
27 144 0.94
28 3 0.02
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TACCCCTGATTTGTAAAATTACCAAAA
Found at i:67402353 original size:81 final size:81
Alignment explanation
Indices: 67402162--67402344 Score: 233
Period size: 81 Copynumber: 2.3 Consensus size: 81
67402152 ATTACCGTTT
* ** * *
67402162 TACCCTTGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTGCCAAAATACCCTCAATT
1 TACCCCTGATTTGTAAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCAATT
67402227 AGTAAAATTACCAAAA
66 AGTAAAATTACCAAAA
* * ** ***
67402243 TACCGCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGCT
1 TACCCCTGATTTGTAAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATA-CCCTCAAT
67402308 T-GTAAAATTACCAAAA
65 TAGTAAAATTACCAAAA
*
67402324 TACCCCTGATTTGTGAAATTA
1 TACCCCTGATTTGTAAAATTA
67402345 TCGAAATACT
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 80 0.93
82 6 0.07
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (81 bp):
TACCCCTGATTTGTAAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCAATT
AGTAAAATTACCAAAA
Found at i:67402413 original size:27 final size:27
Alignment explanation
Indices: 67402372--67402723 Score: 551
Period size: 27 Copynumber: 13.0 Consensus size: 27
67402362 TGTAAAATAT
*
67402372 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
67402399 CGAAATACCCCTGTAAGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
67402426 CAAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** *
67402453 TAAAATAACCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
67402480 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
67402507 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
67402534 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
67402561 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
67402588 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
67402615 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
67402642 TGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
67402669 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
67402696 CGAGATACCCTTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
67402723 C
1 C
67402724 ATTTTGCCCC
Statistics
Matches: 300, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 300 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:67403002 original size:24 final size:25
Alignment explanation
Indices: 67402926--67402995 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
67402916 AGGAAGTGCT
* ** * *
67402926 AAAAGGGCTATGCCTTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
67402951 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
67402976 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
67402996 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:67403008 original size:24 final size:24
Alignment explanation
Indices: 67402951--67403022 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
67402941 TAGTTTACCG
67402951 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
67402975 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
67402999 AAAAGAGGCTAAGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
67403023 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:67404987 original size:38 final size:38
Alignment explanation
Indices: 67404896--67405099 Score: 230
Period size: 38 Copynumber: 5.3 Consensus size: 38
67404886 CGAGGTATAA
* * * *
67404896 AACCCGAACATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGA-TTT
* * * * *
67404935 AAACTCAGATATAATACCAGCACTAGGCCTGGGGGATTT
1 -AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
67404974 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* *
67405012 AACCCAGATATATTACCAGCACGAAGCCTGCGGGATTT
1 AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
* * *
67405050 AACCCGGATATAATTCCAGCA-TATAGCCTGCGGGTCTTT
1 AACCCGGATATAATACCAGCACGA-AGCCTGCGGG-ATTT
67405089 AAGCCCGGATA
1 AA-CCCGGATA
67405100 CACATCAAAT
Statistics
Matches: 140, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
37 1 0.01
38 97 0.69
39 8 0.06
40 34 0.24
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (38 bp):
AACCCGGATATAATACCAGCACGAAGCCTGCGGGATTT
Found at i:67419060 original size:20 final size:18
Alignment explanation
Indices: 67419017--67419051 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67419007 TTCCTGTCAG
**
67419017 AAAATAATTAATTTTTAT
1 AAAATAATTAAAGTTTAT
67419035 AAAATAATTAAAGTTTA
1 AAAATAATTAAAGTTTA
67419052 CTTAAAATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
AAAATAATTAAAGTTTAT
Found at i:67422230 original size:28 final size:28
Alignment explanation
Indices: 67422194--67422247 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
67422184 TTCACATACA
*
67422194 CTCAAAT-AAGCAAGTTAGTCATATAATT
1 CTCAAATAAAGCAAGTAAG-CATATAATT
* *
67422222 CTCATATAAATCAAGTAAGCATATAA
1 CTCAAATAAAGCAAGTAAGCATATAA
67422248 ACTTTTAGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 13 0.59
29 9 0.41
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.30
Consensus pattern (28 bp):
CTCAAATAAAGCAAGTAAGCATATAATT
Found at i:67424218 original size:87 final size:86
Alignment explanation
Indices: 67424072--67424237 Score: 296
Period size: 87 Copynumber: 1.9 Consensus size: 86
67424062 AAGTGCGAAA
* *
67424072 GACAAAAAGCATATAAATATAATGTTCATCGTCACATTATATTAGATTCTTGGAGTTTTTTTACA
1 GACAAAAAGCATATAAATATAACGTTCATCGTCACATTATATTAAATTCTTGGA-TTTTTTTACA
67424137 TTTATTGGAACATTTATTTAGT
65 TTTATTGGAACATTTATTTAGT
*
67424159 GACAAAAAGCATATAAATGTAACGTTCATCGTCACATTATATTAAATTCTTGGATTTTTTTACAT
1 GACAAAAAGCATATAAATATAACGTTCATCGTCACATTATATTAAATTCTTGGATTTTTTTACAT
67424224 TTATTGGAACATTT
66 TTATTGGAACATTT
67424238 GATTGCTTCA
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
86 25 0.33
87 51 0.67
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (86 bp):
GACAAAAAGCATATAAATATAACGTTCATCGTCACATTATATTAAATTCTTGGATTTTTTTACAT
TTATTGGAACATTTATTTAGT
Found at i:67428428 original size:65 final size:65
Alignment explanation
Indices: 67428324--67428454 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
67428314 CATGATATCC
67428324 TTTAAAAATTTGGCGTATTTTGGGACTTTCTCAATTAGTTCAATTAATGGTAGGTTAACATTCAA
1 TTTAAAAATTTGGCGTATTTTGGGACTTTCTCAATTAGTTCAATTAATGGTAGGTTAACATTCAA
* *
67428389 TTTAAAATTTTGGCGTATTTTGGGACTTTCTCAATTAGTTCAATTTATGGTAGGTTAACATTCAA
1 TTTAAAAATTTGGCGTATTTTGGGACTTTCTCAATTAGTTCAATTAATGGTAGGTTAACATTCAA
67428454 T
1 T
67428455 GTTTTAAATA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.44
Consensus pattern (65 bp):
TTTAAAAATTTGGCGTATTTTGGGACTTTCTCAATTAGTTCAATTAATGGTAGGTTAACATTCAA
Found at i:67431572 original size:23 final size:23
Alignment explanation
Indices: 67431546--67431593 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
67431536 AAACGGCTAT
67431546 GATTCGACTAAAGAAGTAAAGAA
1 GATTCGACTAAAGAAGTAAAGAA
* * * *
67431569 GATTCGGCTAGATAAGTGAAGAA
1 GATTCGACTAAAGAAGTAAAGAA
67431592 GA
1 GA
67431594 ATACGTACAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.46, C:0.08, G:0.27, T:0.19
Consensus pattern (23 bp):
GATTCGACTAAAGAAGTAAAGAA
Found at i:67434073 original size:27 final size:27
Alignment explanation
Indices: 67434042--67434166 Score: 115
Period size: 27 Copynumber: 4.6 Consensus size: 27
67434032 ACATAGGGGT
* *
67434042 AAAACAGTCATCTTACCATAAAAGGGC
1 AAAACAGTCATTTTACCACAAAAGGGC
* *
67434069 AAAACAGTCATTTTACCACATAATGGC
1 AAAACAGTCATTTTACCACAAAAGGGC
* * * *
67434096 AAAACAATCATTTTACCTCATAAGGAC
1 AAAACAGTCATTTTACCACAAAAGGGC
** * * *
67434123 AAAACAACCATTTTACCTCATAATGGC
1 AAAACAGTCATTTTACCACAAAAGGGC
* *
67434150 AAAATAGTTATTTTACC
1 AAAACAGTCATTTTACC
67434167 GATTAAGGGT
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.42, C:0.22, G:0.10, T:0.26
Consensus pattern (27 bp):
AAAACAGTCATTTTACCACAAAAGGGC
Found at i:67434090 original size:54 final size:54
Alignment explanation
Indices: 67434031--67434153 Score: 131
Period size: 54 Copynumber: 2.3 Consensus size: 54
67434021 AAACATACAT
* * * * **
67434031 CACATAGGGGTAAAACAGTCATCTTACCAT-AAAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAATCATCTTACC-TCAAAAGGACAAAACAACCATTTTAC
* * *
67434085 CACATAATGGCAAAACAATCATTTTACCTCATAAGGACAAAACAACCATTTTAC
1 CACATAAGGGCAAAACAATCATCTTACCTCAAAAGGACAAAACAACCATTTTAC
* *
67434139 CTCATAATGGCAAAA
1 CACATAAGGGCAAAA
67434154 TAGTTATTTT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.02
54 57 0.98
ACGTcount: A:0.43, C:0.22, G:0.12, T:0.23
Consensus pattern (54 bp):
CACATAAGGGCAAAACAATCATCTTACCTCAAAAGGACAAAACAACCATTTTAC
Found at i:67437233 original size:18 final size:18
Alignment explanation
Indices: 67437210--67437262 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
67437200 TAGCCCATTA
* *
67437210 CAGTAACAATAAATAGTG
1 CAGTAACAGTAAACAGTG
*
67437228 CAGTAACAGTAAGCAGTG
1 CAGTAACAGTAAACAGTG
*
67437246 AAGTAACAGTAAACAGT
1 CAGTAACAGTAAACAGT
67437263 ATGCAAGTCC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.19
Consensus pattern (18 bp):
CAGTAACAGTAAACAGTG
Done.