Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 197 of 290
Found at i:67888765 original size:29 final size:29
Alignment explanation
Indices: 67888733--67888802 Score: 106
Period size: 29 Copynumber: 2.4 Consensus size: 29
67888723 GGTCGTCACC
67888733 ATCCCTTTTCATAATCGATAGCC-AAGGCT
1 ATCCCTTTTCATAATCGATAGCCGAA-GCT
* *
67888762 ATCCCTTTTCGTATTCGATAGCCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
67888791 ATCCCTTTTCAT
1 ATCCCTTTTCAT
67888803 TTTTCAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.23, C:0.29, G:0.13, T:0.36
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCGAAGCT
Found at i:67892861 original size:28 final size:28
Alignment explanation
Indices: 67892825--67892887 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
67892815 CATATATATG
*
67892825 TTATAATAACATAAATTAAACTATGTTT
1 TTATCATAACATAAATTAAACTATGTTT
67892853 TTATCATAACATAAATTAAACTATGTTT
1 TTATCATAACATAAATTAAACTATGTTT
67892881 TTATCAT
1 TTATCAT
67892888 TCTCTCTTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.44
Consensus pattern (28 bp):
TTATCATAACATAAATTAAACTATGTTT
Found at i:67896148 original size:138 final size:138
Alignment explanation
Indices: 67895966--67896499 Score: 822
Period size: 138 Copynumber: 3.9 Consensus size: 138
67895956 GGGGTGTTAC
* * * *
67895966 AATATTAATTTTCATATCTTTTATATTTTGACCGAAATTTATTAATATAACTGTTTATATTAATA
1 AATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAATATAACTGCTTATATTAATA
* * * * * *
67896031 AATTTGTTAAAATATATACAATTAATTTTTTGTATGAACCAAATTCATATATTAATTATATTATT
66 AATTCGGTAAAATATATACAAATAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTT
*
67896096 TCCA-AAAG
131 T-CAGAAAT
*
67896104 AATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAATATAACTGCTTATATTAATA
1 AATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAATATAACTGCTTATATTAATA
* * * *
67896169 AATTCGGTAAAATATATACAAATAATATTTTGCATGAATTACATTCATCTATTAATTATATTCTT
66 AATTCGGTAAAATATATACAAATAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTT
67896234 TCAGAAAT
131 TCAGAAAT
*
67896242 AATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAATATAACTGCTTATATTAATA
1 AATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAATATAACTGCTTATATTAATA
*
67896307 AATTCGGTAAAATATATACAAATAATATTTTGTATGAATTAAATTCATATATTAATTATATTCTT
66 AATTCGGTAAAATATATACAAATAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTT
67896372 TCAGAAAT
131 TCAGAAAT
* * *
67896380 AATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAATATAA-T-TTTTTATTAATA
1 AATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAATATAACTGCTTATATTAATA
* * *
67896443 AATTCAGTAAAATATATACAATTAATATATTGTATGAATCAAATTCATATATTAATT
66 AATTCGGTAAAATATATACAAATAATATTTTGTATGAATCAAATTCATATATTAATT
67896500 TTATCTATAT
Statistics
Matches: 368, Mismatches: 27, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
136 63 0.17
137 3 0.01
138 302 0.82
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (138 bp):
AATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAATATAACTGCTTATATTAATA
AATTCGGTAAAATATATACAAATAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTT
TCAGAAAT
Found at i:67896197 original size:67 final size:67
Alignment explanation
Indices: 67896126--67896338 Score: 170
Period size: 67 Copynumber: 3.1 Consensus size: 67
67896116 CATGTCTTTT
67896126 ATATTTTGACTGAAATTAATTAATATAACTGCTTATATTAATAAATTCGGTAAAATATATACAAA
1 ATATTTTGACTGAAATTAATTAATATAACTGCTTATATTAATAAATTCGGTAAAATATATACAAA
67896191 TA
66 TA
* * * ** * * *
67896193 ATATTTTG-CATG-AATTACATTCATCT-ATTAATTATATT-CT---TTCAGAAATAATATTAAT
1 ATATTTTGAC-TGAAATTA-ATTAATATAACTGCTTATATTAATAAATTCGGTAA-AATA-T-A-
* ** *
67896251 TTCCATGTCTTTT
60 -TACA----AATA
67896264 ATATTTTGACTGAAATTAATTAATATAACTGCTTATATTAATAAATTCGGTAAAATATATACAAA
1 ATATTTTGACTGAAATTAATTAATATAACTGCTTATATTAATAAATTCGGTAAAATATATACAAA
67896329 TA
66 TA
67896331 ATATTTTG
1 ATATTTTG
67896339 TATGAATTAA
Statistics
Matches: 104, Mismatches: 24, Indels: 36
0.63 0.15 0.22
Matches are distributed among these distances:
62 6 0.06
63 4 0.04
64 1 0.01
65 2 0.02
66 15 0.14
67 28 0.27
71 20 0.19
72 15 0.14
73 2 0.02
74 1 0.01
75 4 0.04
76 6 0.06
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (67 bp):
ATATTTTGACTGAAATTAATTAATATAACTGCTTATATTAATAAATTCGGTAAAATATATACAAA
TA
Found at i:67897581 original size:56 final size:56
Alignment explanation
Indices: 67897495--67897726 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
67897485 ACAAGGGATG
67897495 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
67897551 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
67897607 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
67897663 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
67897719 ATGGGCAA
1 ATGGGCAA
67897727 TAAACTAATA
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:67917152 original size:129 final size:129
Alignment explanation
Indices: 67916901--67917161 Score: 461
Period size: 128 Copynumber: 2.0 Consensus size: 129
67916891 AACAAGGTTT
* *
67916901 TAATACAAACAAGTTTTTTTAGTAAAACTACGTTTTACAAAACTCACTTCTATGTGACATCATAG
1 TAATACAAACAAGTTTTTTTAGTAAAACTACATTTTACAAAACTCACTTCTATGTGACATCATAA
67916966 ATACAGCCCTAACGTCTAGGCCGATTTGGGGTGTTACATTTAGTGGTATCAGAGCCAGGTTACA
66 ATACAGCCCTAACGTCTAGGCCGATTTGGGGTGTTACATTTAGTGGTATCAGAGCCAGGTTACA
*
67917030 TAATACAAACAAG-TTTTTTAGTAAAACTATATTTTACAAAACTCACTTCTATGTGACATCATAA
1 TAATACAAACAAGTTTTTTTAGTAAAACTACATTTTACAAAACTCACTTCTATGTGACATCATAA
* *
67917094 ATACAGCTCTAACGTCTAGGCCAGGTTTGGGGTGTTACATTTAGTGGTATCAGAGCCAGGTTACA
66 ATACAGCCCTAACGTCTAGGCC-GATTTGGGGTGTTACATTTAGTGGTATCAGAGCCAGGTTACA
67917159 TAA
1 TAA
67917162 ACTCGGCTGT
Statistics
Matches: 126, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
128 69 0.55
129 57 0.45
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (129 bp):
TAATACAAACAAGTTTTTTTAGTAAAACTACATTTTACAAAACTCACTTCTATGTGACATCATAA
ATACAGCCCTAACGTCTAGGCCGATTTGGGGTGTTACATTTAGTGGTATCAGAGCCAGGTTACA
Found at i:67924374 original size:34 final size:34
Alignment explanation
Indices: 67924277--67924374 Score: 96
Period size: 34 Copynumber: 2.9 Consensus size: 34
67924267 TATGCATTTC
67924277 TGATATTG-TAATGA-ATTGGGCTAAGGCCCACAT
1 TGATATTGCTAATGATA-TGGGCTAAGGCCCACAT
* * * *
67924310 TGTTACTGCTATTG-TAATAGGCTAAGGCCCACAT
1 TGATATTGCTAATGAT-ATGGGCTAAGGCCCACAT
*
67924344 TGATATTGCTACTGATATGGGCTTAA-GCCCA
1 TGATATTGCTAATGATATGGGC-TAAGGCCCA
67924375 GACTGTTCAG
Statistics
Matches: 52, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
33 6 0.12
34 41 0.79
35 5 0.10
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (34 bp):
TGATATTGCTAATGATATGGGCTAAGGCCCACAT
Found at i:67928019 original size:45 final size:47
Alignment explanation
Indices: 67927951--67928038 Score: 126
Period size: 45 Copynumber: 1.9 Consensus size: 47
67927941 ACCACAGTAA
* *
67927951 GAGCTTACTATTTTCAGCTCAATAGAGTTTACCATTTCAGCTCGTAT
1 GAGCTTACTAGTTTCAGCTCAATAGAGCTTACCATTTCAGCTCGTAT
**
67927998 GAGCTTACT-GTTT-AGCTCAATAGAGCTTACTGTTTCAGCTC
1 GAGCTTACTAGTTTCAGCTCAATAGAGCTTACCATTTCAGCTC
67928039 AATAAAGCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 25 0.68
46 3 0.08
47 9 0.24
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.38
Consensus pattern (47 bp):
GAGCTTACTAGTTTCAGCTCAATAGAGCTTACCATTTCAGCTCGTAT
Found at i:67928023 original size:22 final size:23
Alignment explanation
Indices: 67927950--67928064 Score: 126
Period size: 23 Copynumber: 4.9 Consensus size: 23
67927940 CACCACAGTA
*
67927950 AGAGCTTACTATTTTCAGCTCAAT
1 AGAGCTTACT-GTTTCAGCTCAAT
* ** *
67927974 AGAGTTTACCATTTCAGCTC-GT
1 AGAGCTTACTGTTTCAGCTCAAT
67927996 ATGAGCTTACTGTTT-AGCTCAAT
1 A-GAGCTTACTGTTTCAGCTCAAT
67928019 AGAGCTTACTGTTTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
*
67928042 AAAGCTTACTGTTCATCAGCTCA
1 AGAGCTTACTGTT--TCAGCTCA
67928065 GGAGGAGCTT
Statistics
Matches: 77, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
22 20 0.26
23 41 0.53
24 8 0.10
25 8 0.10
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.36
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:67928048 original size:45 final size:46
Alignment explanation
Indices: 67927952--67928064 Score: 122
Period size: 45 Copynumber: 2.4 Consensus size: 46
67927942 CCACAGTAAG
* * * *
67927952 AGCTTACTATTTTCAGCTCAATAGAGTTTACCATTTCAGCTCGTATG
1 AGCTTACT-GTTTCAGCTCAATAGAGCTTACCATTTCAGCTCATATA
**
67927999 AGCTTACTGTTT-AGCTCAATAGAGCTTACTGTTTCAGCTCA-ATAA
1 AGCTTACTGTTTCAGCTCAATAGAGCTTACCATTTCAGCTCATAT-A
67928044 AGCTTACTGTTCATCAGCTCA
1 AGCTTACTGTT--TCAGCTCA
67928065 GGAGGAGCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
44 2 0.04
45 36 0.64
46 3 0.05
47 9 0.16
48 6 0.11
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (46 bp):
AGCTTACTGTTTCAGCTCAATAGAGCTTACCATTTCAGCTCATATA
Found at i:67930806 original size:48 final size:47
Alignment explanation
Indices: 67930726--67930949 Score: 167
Period size: 48 Copynumber: 4.8 Consensus size: 47
67930716 CACATGGTAG
* *
67930726 GATGCCAATGCCATATCCCAGATATGGTCTTACATAGGATTACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGATTACATATC
* *
67930774 GATGCCAATGCCATGTCCCAGACATGGCCTTACATGGGA-T-CGTAGGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGATTACATA--TC
* * * * *
67930822 GATGCCAATTCCAAGTCCCAAACATGGTTTTACATGAGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATG-GATTACATATC
* * * * ***
67930870 GATGCCGAT---A-G-GCTAGATATGGTCTTACACAAAATTACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACA-TGGATTACATATC
* *
67930913 AATTCCAAAT-CCATGTCCCAGACATGGTCTTACATGG
1 GATGCC-AATGCCATGTCCCAGACATGGTCTTACATGG
67930950 GACCGTTCAT
Statistics
Matches: 134, Mismatches: 31, Indels: 23
0.71 0.16 0.12
Matches are distributed among these distances:
43 26 0.19
44 3 0.02
45 1 0.01
46 4 0.03
47 3 0.02
48 94 0.70
50 3 0.02
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGATTACATATC
Found at i:67932859 original size:41 final size:40
Alignment explanation
Indices: 67932801--67932889 Score: 151
Period size: 41 Copynumber: 2.2 Consensus size: 40
67932791 TGGCCAAACG
*
67932801 CACGCCCGTGTCCTGGCCAGTGTCCTTCACACGGCCTAGA
1 CACGCCCGCGTCCTGGCCAGTGTCCTTCACACGGCCTAGA
*
67932841 CACGCCCGCGTCCTTGGCCTGTGTCCTTCACACGGCCTAGA
1 CACGCCCGCGTCC-TGGCCAGTGTCCTTCACACGGCCTAGA
67932882 CACGCCCG
1 CACGCCCG
67932890 TGTGGTCGCC
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
40 12 0.26
41 34 0.74
ACGTcount: A:0.13, C:0.43, G:0.25, T:0.19
Consensus pattern (40 bp):
CACGCCCGCGTCCTGGCCAGTGTCCTTCACACGGCCTAGA
Found at i:67934316 original size:55 final size:52
Alignment explanation
Indices: 67934228--67934483 Score: 231
Period size: 55 Copynumber: 4.9 Consensus size: 52
67934218 CATTAGGGTT
*
67934228 TAAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAA
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAA
* * * * *
67934281 GGTAAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACT-A
1 --TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAA
* * *
67934333 TAAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAA
1 TAAGG---A--TACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAA
* *
67934389 GGCAAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA
1 --TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAA
* * *
67934441 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
67934484 GAAACCGTGT
Statistics
Matches: 168, Mismatches: 22, Indels: 28
0.77 0.10 0.13
Matches are distributed among these distances:
49 40 0.24
50 5 0.03
52 3 0.02
53 38 0.23
54 13 0.08
55 64 0.38
56 1 0.01
58 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (52 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAA
Found at i:67934435 original size:108 final size:110
Alignment explanation
Indices: 67934236--67934436 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
67934226 TTTAAGGATA
* *
67934236 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGTAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
67934301 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
67934346 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
67934408 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
67934437 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:67934578 original size:23 final size:24
Alignment explanation
Indices: 67934552--67934596 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
67934542 AAGGTAAGGT
67934552 AAGGTAAGACAAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
67934575 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
67934597 GAAGAGCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:67935261 original size:51 final size:49
Alignment explanation
Indices: 67935206--67935305 Score: 182
Period size: 51 Copynumber: 2.0 Consensus size: 49
67935196 ATGGATTTAG
67935206 ATAGTGAATGAGATATAGAATTAAATCTTATTGATTCTATTTTCATATGAA
1 ATAGTGAATGAGATATAGAATTAAATCTTATTGATTCTA--TTCATATGAA
67935257 ATAGTGAATGAGATATAGAATTAAATCTTATTGATTCTATTCATATGAA
1 ATAGTGAATGAGATATAGAATTAAATCTTATTGATTCTATTCATATGAA
67935306 GAAACATAGT
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
49 10 0.20
51 39 0.80
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (49 bp):
ATAGTGAATGAGATATAGAATTAAATCTTATTGATTCTATTCATATGAA
Found at i:67940683 original size:19 final size:19
Alignment explanation
Indices: 67940655--67940696 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
67940645 TAGAAGGTCC
*
67940655 AATTTGATATTTAGGACTA
1 AATTTAATATTTAGGACTA
*
67940674 AATTTAATATTTTGGACTA
1 AATTTAATATTTAGGACTA
67940693 AATT
1 AATT
67940697 GCAAACGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (19 bp):
AATTTAATATTTAGGACTA
Found at i:67941909 original size:53 final size:52
Alignment explanation
Indices: 67941729--67941983 Score: 225
Period size: 55 Copynumber: 4.8 Consensus size: 52
67941719 ATTAGGGTTT
* * *
67941729 AAGGATACCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTTTCTAGGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCTAAGGC
* * * *
67941784 AAGGAAATCATGTAAGACCATGTCAAGACGTGGCA-TGGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGG-TAAGTT-C--TAAGGC
* * *
67941839 AAAGG-TCCCATGTAAGACCATGCCAAGTCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTC-TAAGGC
* *
67941892 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCT-AAGGC
* * * * *
67941941 AAGGATACCACGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
67941984 GTACCCGTTT
Statistics
Matches: 169, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
49 39 0.23
51 1 0.01
52 8 0.05
53 47 0.28
54 5 0.03
55 62 0.37
56 7 0.04
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.21
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGGC
Found at i:67941935 original size:108 final size:110
Alignment explanation
Indices: 67941736--67941936 Score: 293
Period size: 108 Copynumber: 1.8 Consensus size: 110
67941726 TTTAAGGATA
* *
67941736 CCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTTTCTAGGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
67941801 CCATGTCAAGACGTGGCATGGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCATGGATAAGTTACTATAAGGCAAAGGTC
* * * *
67941846 CCATGTAAGACCATGCCAAGTCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
67941908 ACCATGTCAAGACATGGCAATGG-TAAGTT
65 ACCATGTCAAGACATGGC-ATGGATAAGTT
67941937 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
107 3 0.04
108 43 0.52
109 11 0.13
110 25 0.30
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATAGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCATGGATAAGTTACTATAAGGCAAAGGTC
Found at i:67941973 original size:49 final size:50
Alignment explanation
Indices: 67941850--67941983 Score: 155
Period size: 49 Copynumber: 2.6 Consensus size: 50
67941840 AAGGTCCCAT
* * * *
67941850 GTAAGACCATGCCAAGTCATGGCATTGGTGAGTTCATAAGGCAAGGATACCAT
1 GTAAGACCATGACAAGTCATGGCAATGGTAAGTTCA-AA-G-AAGGATACCAC
* *
67941903 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA-AAGGATACCAC
1 GTAAGACCATGACAAGTCATGGCAATGGTAAG-TTCAAAGAAGGATACCAC
*
67941952 GTAAGACCATGACAAGTCATGGAAATGGTAAG
1 GTAAGACCATGACAAGTCATGGCAATGGTAAG
67941984 GTACCCGTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
49 39 0.54
52 2 0.03
53 28 0.39
54 3 0.04
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (50 bp):
GTAAGACCATGACAAGTCATGGCAATGGTAAGTTCAAAGAAGGATACCAC
Found at i:67942078 original size:23 final size:24
Alignment explanation
Indices: 67942052--67942096 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
67942042 AAGGTAAGGT
67942052 AAGGTAAGACAAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
67942075 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
67942097 GAAGAGCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:67942196 original size:16 final size:16
Alignment explanation
Indices: 67942175--67942205 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67942165 ATAAATTTGA
67942175 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
67942191 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
67942206 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:67946257 original size:93 final size:93
Alignment explanation
Indices: 67946145--67946315 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
67946135 GCCCATAAGT
* *
67946145 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67946210 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
67946238 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
67946303 CGAGTTCGGATGC
66 CGAGCTCGGATGC
67946316 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:67946312 original size:46 final size:46
Alignment explanation
Indices: 67946137--67946312 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
67946127 TGTAACCCGC
* *
67946137 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
67946183 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
67946229 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
67946276 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
67946313 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:67946769 original size:30 final size:30
Alignment explanation
Indices: 67946735--67946794 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
67946725 ATTTAATACG
67946735 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
67946765 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
67946795 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:67949657 original size:46 final size:46
Alignment explanation
Indices: 67949607--67949871 Score: 231
Period size: 46 Copynumber: 5.7 Consensus size: 46
67949597 TGGTTGAGCA
67949607 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
67949653 TCCGAACTCGTTGAGTTGACTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
67949698 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
67949746 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
67949791 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
67949839 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
67949872 TGGGGCGGGT
Statistics
Matches: 170, Mismatches: 31, Indels: 36
0.72 0.13 0.15
Matches are distributed among these distances:
42 4 0.02
43 7 0.04
45 6 0.04
46 84 0.49
47 53 0.31
48 6 0.04
50 6 0.04
51 4 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67949717 original size:47 final size:47
Alignment explanation
Indices: 67949653--67949821 Score: 195
Period size: 47 Copynumber: 3.6 Consensus size: 47
67949643 GATGCGAATG
*
67949653 TCCGAACTCGTTGAGTTGACTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
* * * * *
67949700 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAAC---GC-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCA
*
67949747 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
*
67949793 TCCGAACTCGTTGAGTTGAGTTCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
67949822 ACTTATGGAT
Statistics
Matches: 99, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
45 4 0.04
46 26 0.26
47 53 0.54
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
Found at i:67949763 original size:93 final size:93
Alignment explanation
Indices: 67949604--67949867 Score: 483
Period size: 93 Copynumber: 2.8 Consensus size: 93
67949594 GGATGGTTGA
* * * *
67949604 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
*
67949669 TGACTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
67949697 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
67949762 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
67949790 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
67949855 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67949868 ACTTTGGGGC
Statistics
Matches: 166, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 166 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:67970032 original size:21 final size:21
Alignment explanation
Indices: 67969998--67970049 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 21
67969988 TTAAGTGTTC
67969998 TTTTACATTAACTTTACTACCA
1 TTTT-CATTAACTTTACTACCA
*
67970020 TTTTCATTCACTTTACTACCA
1 TTTTCATTAACTTTACTACCA
67970041 TTTTCATTA
1 TTTTCATTA
67970050 TCTCTGAGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTTCATTAACTTTACTACCA
Found at i:67975949 original size:15 final size:15
Alignment explanation
Indices: 67975929--67975971 Score: 63
Period size: 14 Copynumber: 3.0 Consensus size: 15
67975919 GAACCAAGTG
67975929 TTTTTCTTTTCTTTT
1 TTTTTCTTTTCTTTT
67975944 TTTTTCTTTT-TTTT
1 TTTTTCTTTTCTTTT
*
67975958 TTTTT-TTTGCTTTT
1 TTTTTCTTTTCTTTT
67975972 CAAACTTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 3 0.12
14 13 0.50
15 10 0.38
ACGTcount: A:0.00, C:0.09, G:0.02, T:0.88
Consensus pattern (15 bp):
TTTTTCTTTTCTTTT
Found at i:67975971 original size:10 final size:10
Alignment explanation
Indices: 67975929--67975965 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
67975919 GAACCAAGTG
67975929 TTTTTCTTTTC
1 TTTTT-TTTTC
67975940 TTTTTTTTTC
1 TTTTTTTTTC
67975950 TTTTTTTTT-
1 TTTTTTTTTC
67975959 TTTTTTT
1 TTTTTTT
67975966 GCTTTTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 7 0.27
10 14 0.54
11 5 0.19
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:67976542 original size:19 final size:17
Alignment explanation
Indices: 67976501--67976541 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
67976491 GAAAAGAATA
67976501 ATAAAAGAAAAGGGGAG
1 ATAAAAGAAAAGGGGAG
*
67976518 ATAAAAGAGAAGGGGAG
1 ATAAAAGAAAAGGGGAG
67976535 ATTAAAA
1 A-TAAAA
67976542 ATAAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.59, C:0.00, G:0.32, T:0.10
Consensus pattern (17 bp):
ATAAAAGAAAAGGGGAG
Found at i:67980045 original size:9 final size:9
Alignment explanation
Indices: 67980024--67980089 Score: 61
Period size: 9 Copynumber: 7.7 Consensus size: 9
67980014 TAAAATATGT
67980024 TTTTTATAA
1 TTTTTATAA
67980033 --TTT-TAA
1 TTTTTATAA
*
67980039 TTTTTTTAA
1 TTTTTATAA
*
67980048 TTTTTAAAAA
1 TTTTT-ATAA
67980058 GTTTTTATAA
1 -TTTTTATAA
67980068 TTTTTATAA
1 TTTTTATAA
67980077 -TTTTA-AA
1 TTTTTATAA
67980084 TTTTTA
1 TTTTTA
67980090 AAAATTAAGT
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
6 3 0.06
7 5 0.10
8 13 0.27
9 17 0.35
10 5 0.10
11 5 0.10
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTTATAA
Found at i:67980073 original size:36 final size:37
Alignment explanation
Indices: 67980001--67980094 Score: 104
Period size: 36 Copynumber: 2.5 Consensus size: 37
67979991 TTTAATTTAC
*
67980001 TTTTTAAGTTTTTTAAAATATGTTTTTTATAATTTTA-ATT
1 TTTTTAA--TTTTTAAAA-ATGTTTTTTATAATTTTATA-A
67980041 TTTTTAATTTTTAAAAA-G-TTTTTATAATTTTTATAA
1 TTTTTAATTTTTAAAAATGTTTTTTATAA-TTTTATAA
*
67980077 TTTTAAATTTTTAAAAAT
1 TTTTTAATTTTTAAAAAT
67980095 TAAGTAAATA
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
35 9 0.18
36 22 0.45
37 2 0.04
38 9 0.18
40 7 0.14
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (37 bp):
TTTTTAATTTTTAAAAATGTTTTTTATAATTTTATAA
Found at i:67985028 original size:41 final size:40
Alignment explanation
Indices: 67984968--67985135 Score: 160
Period size: 41 Copynumber: 4.1 Consensus size: 40
67984958 CCTTGAGTCC
67984968 AGCAAGCTTCGTG-CTAGTGTATATTATTAGGCTTTGTGCCT
1 AGCAAGCTTCGTGTC-AGTGTAT-TTATTAGGCTTTGTGCCT
* *
67985009 AGTAAGCTTCGTGTCAGTGTATTATATCAGGCTTTGTGCCT
1 AGCAAGCTTCGTGTCAGTGTATT-TATTAGGCTTTGTGCCT
* * * * * *
67985050 AACAGGCTTCGTGTCGGTGTATCGTAATAGGCTTTGAGCCT
1 AGCAAGCTTCGTGTCAGTGTAT-TTATTAGGCTTTGTGCCT
* * * *
67985091 AGCAGGCTTCGTGTC-GATGTATTATAATAAGCTTTATGCCT
1 AGCAAGCTTCGTGTCAG-TGTATT-TATTAGGCTTTGTGCCT
67985132 AGCA
1 AGCA
67985136 GGTTTCATGC
Statistics
Matches: 107, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
40 2 0.02
41 104 0.97
42 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (40 bp):
AGCAAGCTTCGTGTCAGTGTATTTATTAGGCTTTGTGCCT
Found at i:67985112 original size:82 final size:81
Alignment explanation
Indices: 67984995--67985203 Score: 201
Period size: 82 Copynumber: 2.6 Consensus size: 81
67984985 TGTATATTAT
* * * *
67984995 TAGGCTTTGTGCCTAGTAAGCTTCGTGTC-AGTGTATTATATCAGGCTTTGTGCCTAACAGGCTT
1 TAGGCTTTGAGCCTAGCAGGCTTCGTGTCGA-TGTATTATATCAGGCTTTATGCCTAACAGGCTT
* *
67985059 CGTG-TCGGTGTATCGTAA
65 CATGCT-GATGTATCGT-A
* * *
67985077 TAGGCTTTGAGCCTAGCAGGCTTCGTGTCGATGTATTATAAT-AAGCTTTATGCCTAGCAGGTTT
1 TAGGCTTTGAGCCTAGCAGGCTTCGTGTCGATGTATTAT-ATCAGGCTTTATGCCTAACAGGCTT
* *
67985141 CATGCTGATGTGTTGTA
65 CATGCTGATGTATCGTA
* * * *
67985158 TCAGG-TCTTGAACCTAGCAGTCTTTGTGTCGATGTATTGTATCAGG
1 T-AGGCT-TTGAGCCTAGCAGGCTTCGTGTCGATGTATTATATCAGG
67985204 TAAGTTGTAC
Statistics
Matches: 105, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
81 5 0.05
82 96 0.91
83 4 0.04
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.37
Consensus pattern (81 bp):
TAGGCTTTGAGCCTAGCAGGCTTCGTGTCGATGTATTATATCAGGCTTTATGCCTAACAGGCTTC
ATGCTGATGTATCGTA
Found at i:67988452 original size:18 final size:18
Alignment explanation
Indices: 67988406--67988453 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 18
67988396 AGGTGTGTTT
* **
67988406 CATAATCAGATACAGATG
1 CATAATCAGATTCAGACA
* *
67988424 CATATTTAGATTCAGACA
1 CATAATCAGATTCAGACA
67988442 CATAATCAGATT
1 CATAATCAGATT
67988454 TAGATGCAAA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (18 bp):
CATAATCAGATTCAGACA
Found at i:67988661 original size:20 final size:20
Alignment explanation
Indices: 67988636--67988676 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
67988626 CCAGACAGTT
67988636 ATTGCAGT-TTAACCGCCAAA
1 ATTGCAGTATT-ACCGCCAAA
*
67988656 ATTGCAGTATTACTGCCAAA
1 ATTGCAGTATTACCGCCAAA
67988676 A
1 A
67988677 AACACTTCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.27
Consensus pattern (20 bp):
ATTGCAGTATTACCGCCAAA
Found at i:67996567 original size:20 final size:21
Alignment explanation
Indices: 67996522--67996567 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
67996512 CCATACAGAC
* *
67996522 CATATCTTAACATATTATAAT
1 CATATCATAACATATCATAAT
*
67996543 -GTATCATAACATATCAT-AT
1 CATATCATAACATATCATAAT
67996562 CATATC
1 CATATC
67996568 GAATCATAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 3
0.74 0.15 0.11
Matches are distributed among these distances:
19 2 0.10
20 18 0.90
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.39
Consensus pattern (21 bp):
CATATCATAACATATCATAAT
Found at i:67996814 original size:13 final size:14
Alignment explanation
Indices: 67996796--67996832 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
67996786 AAACACAAGC
67996796 ATATCATAAT-CAT
1 ATATCATAATACAT
67996809 ATATCATACATACAT
1 ATATCATA-ATACAT
67996824 ATATCATAA
1 ATATCATAA
67996833 ATTGTAATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.36
14 3 0.14
15 11 0.50
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (14 bp):
ATATCATAATACAT
Found at i:68006416 original size:19 final size:19
Alignment explanation
Indices: 68006394--68006430 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
68006384 TCGGTTTGAT
68006394 AATGTGTGAACAATTCTAA
1 AATGTGTGAACAATTCTAA
68006413 AATGTGTGAACAATTCTA
1 AATGTGTGAACAATTCTA
68006431 GCGAATAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (19 bp):
AATGTGTGAACAATTCTAA
Found at i:68010633 original size:24 final size:24
Alignment explanation
Indices: 68010606--68010654 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
68010596 CTACGCCAAG
* *
68010606 CTGATCCGAATACGACTGGAAAAC
1 CTGATCCAAATACCACTGGAAAAC
68010630 CTGATCCAAATACCACTGGAAAAC
1 CTGATCCAAATACCACTGGAAAAC
68010654 C
1 C
68010655 CAGTTCATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.39, C:0.29, G:0.16, T:0.16
Consensus pattern (24 bp):
CTGATCCAAATACCACTGGAAAAC
Found at i:68015286 original size:27 final size:27
Alignment explanation
Indices: 68015256--68015433 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68015246 ATATTGAGCC
* * * *
68015256 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
68015283 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68015310 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
68015338 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
68015365 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
68015392 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68015419 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68015434 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:68015395 original size:82 final size:81
Alignment explanation
Indices: 68015277--68015432 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68015267 TGCTATATAA
* *
68015277 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
68015342 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
68015359 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
68015423 CACTTAGTGC
65 CACTTAGTGC
68015433 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:68020567 original size:20 final size:20
Alignment explanation
Indices: 68020523--68020567 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
68020513 TCAATTAATT
* *
68020523 TTTTAAAAACATATTTCTTC
1 TTTTAAAAACAAATTGCTTC
68020543 TTTTAAAAA-AAATTGCTTC
1 TTTTAAAAACAAATTGCTTC
68020562 TGTTTA
1 T-TTTA
68020568 TGATTAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.36, C:0.11, G:0.04, T:0.49
Consensus pattern (20 bp):
TTTTAAAAACAAATTGCTTC
Found at i:68026214 original size:22 final size:22
Alignment explanation
Indices: 68026189--68026231 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
68026179 ACTCCTCATT
68026189 CCTTAAT-TTCCTCACCAAAATC
1 CCTTAATCTT-CTCACCAAAATC
*
68026211 CCTTAATCTTCTCGCCAAAAT
1 CCTTAATCTTCTCACCAAAAT
68026232 TGTCCACCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.30, C:0.35, G:0.02, T:0.33
Consensus pattern (22 bp):
CCTTAATCTTCTCACCAAAATC
Found at i:68027177 original size:40 final size:40
Alignment explanation
Indices: 68027128--68027203 Score: 152
Period size: 40 Copynumber: 1.9 Consensus size: 40
68027118 TTTTAAGCTA
68027128 ATACGAACTTCACAACTTCTTCGATTTAAGCTAATAATAT
1 ATACGAACTTCACAACTTCTTCGATTTAAGCTAATAATAT
68027168 ATACGAACTTCACAACTTCTTCGATTTAAGCTAATA
1 ATACGAACTTCACAACTTCTTCGATTTAAGCTAATA
68027204 CGGTTTATGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (40 bp):
ATACGAACTTCACAACTTCTTCGATTTAAGCTAATAATAT
Found at i:68039633 original size:20 final size:20
Alignment explanation
Indices: 68039608--68039674 Score: 98
Period size: 20 Copynumber: 3.3 Consensus size: 20
68039598 TTGTACGAAA
68039608 TTTGCACTTCGATGCCCCTG
1 TTTGCACTTCGATGCCCCTG
68039628 TTTGCACTTCGATGCCCCTG
1 TTTGCACTTCGATGCCCCTG
* * *
68039648 TCTGCACTTTGGTGCCCCTG
1 TTTGCACTTCGATGCCCCTG
68039668 TTATGCA
1 TT-TGCA
68039675 TCTGTGATGC
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
20 38 0.90
21 4 0.10
ACGTcount: A:0.10, C:0.33, G:0.21, T:0.36
Consensus pattern (20 bp):
TTTGCACTTCGATGCCCCTG
Found at i:68047926 original size:47 final size:44
Alignment explanation
Indices: 68047857--68048212 Score: 154
Period size: 47 Copynumber: 7.5 Consensus size: 44
68047847 TTTGTGTGCT
*
68047857 AGTGTAAGACATGTCTGGGACATGCATCAGACACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGACGAGAGCC
* * *
68047903 AGTGTAAGACCGTGTCTGAGACATGGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACATT--GACGAGAGCC
* * *
68047951 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACATTGACGA-G--AGCC
* * *
68047997 AATATAAGACATGTCTGGGACATGGCATCGGCACA-T-AC-AGAGGTTC
1 AGTGTAAGACATGTCTGGGACAT-GCATC-G-ACATTGACGAGA-G-CC
* *
68048043 AGTGTAAGACTATGTCTAGGACATGACATCGGCACGGATATGTA--AGAGCT
1 AGTGTAAGAC-ATGTCTGGGACATG-CATC-G-AC--AT-TG-ACGAGAGCC
* * * * * *
68048093 AGTGTAAGACCATGTCTGAGACATGGCGTCAGCCTCTATT-TCGATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-G--AC-ATTGACGAGAGCC
* *
68048142 AGTGTAAGAACATGTCTGGGACATGGCATCGAC-TTGATGGATGAACC
1 AGTGTAAG-ACATGTCTGGGACAT-GCATCGACATTGA-CGA-GAGCC
*
68048189 AGTGTAAAACCATGTCTGGGACAT
1 AGTGTAAGA-CATGTCTGGGACAT
68048213 AACATCGGTA
Statistics
Matches: 238, Mismatches: 40, Indels: 63
0.70 0.12 0.18
Matches are distributed among these distances:
43 2 0.01
44 6 0.03
45 6 0.03
46 56 0.24
47 76 0.32
48 23 0.10
49 32 0.13
50 27 0.11
51 6 0.03
52 3 0.01
53 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATTGACGAGAGCC
Found at i:68050720 original size:45 final size:43
Alignment explanation
Indices: 68050609--68050743 Score: 128
Period size: 43 Copynumber: 3.1 Consensus size: 43
68050599 GCACACAATG
* *
68050609 TGCATCATCGAATAAACAAAAGCAACTATACTGACACATACAA
1 TGCATCATTGAATAAACAAAAGCAACTATACTGGCACATACAA
* * * * *
68050652 TGCATCATTGAATAAATAGAAGCAGCTATACTGGCACATGCGCAG
1 TGCATCATTGAATAAACAAAAGCAACTATACTGGCACAT--ACAA
* * * * *
68050697 TGCATCATT-AGATAAACCAAAGCAAATATATTGGCACACACAG
1 TGCATCATTGA-ATAAACAAAAGCAACTATACTGGCACATACAA
68050740 TGCA
1 TGCA
68050744 GCATCATATA
Statistics
Matches: 74, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
43 41 0.55
44 1 0.01
45 32 0.43
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (43 bp):
TGCATCATTGAATAAACAAAAGCAACTATACTGGCACATACAA
Found at i:68051458 original size:19 final size:19
Alignment explanation
Indices: 68051405--68051454 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
68051395 GATAACATAC
*
68051405 AACATGGGTTCGCAT-AAT
1 AACATGGGTTTGCATAAAT
*
68051423 AACATGAGTTTGCATAAAT
1 AACATGGGTTTGCATAAAT
68051442 -ACATGGGTTTGCA
1 AACATGGGTTTGCA
68051455 ATAAGAAGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 25 0.89
19 3 0.11
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (19 bp):
AACATGGGTTTGCATAAAT
Found at i:68055135 original size:11 final size:11
Alignment explanation
Indices: 68055119--68055177 Score: 52
Period size: 11 Copynumber: 5.5 Consensus size: 11
68055109 TTATATATAC
68055119 TAATAAAATAA
1 TAATAAAATAA
68055130 TAATAAAATAA
1 TAATAAAATAA
* *
68055141 TAA-AATATCA
1 TAATAAAATAA
68055151 TAA-AAAATCAA
1 TAATAAAAT-AA
* *
68055162 -ATTAAAATAT
1 TAATAAAATAA
68055172 TAATAA
1 TAATAA
68055178 CTAATATTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
10 14 0.37
11 24 0.63
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:68055446 original size:31 final size:30
Alignment explanation
Indices: 68055411--68055469 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
68055401 CACCCTTAAA
68055411 ATATTTACACTATT-AGCCCTTCAAATTTTTC
1 ATATTTACACT-TTAAGCCC-TCAAATTTTTC
* *
68055442 ATATTTATACTTTAATCCCTCAAATTTT
1 ATATTTACACTTTAAGCCCTCAAATTTT
68055470 AAGTATTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.31, C:0.20, G:0.02, T:0.47
Consensus pattern (30 bp):
ATATTTACACTTTAAGCCCTCAAATTTTTC
Found at i:68056197 original size:20 final size:20
Alignment explanation
Indices: 68056172--68056214 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
68056162 CGACAATGAA
68056172 AGAGAACGAAAATTGAATGT
1 AGAGAACGAAAATTGAATGT
*
68056192 AGAGAATGAAAATTGAATGT
1 AGAGAACGAAAATTGAATGT
68056212 AGA
1 AGA
68056215 CTGCGGAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.02, G:0.26, T:0.21
Consensus pattern (20 bp):
AGAGAACGAAAATTGAATGT
Found at i:68058323 original size:24 final size:24
Alignment explanation
Indices: 68058296--68058354 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
68058286 ATATTTTTTT
**
68058296 GTCCATTTTGAACTTTACAACTAG
1 GTCCATTTTGAACTAGACAACTAG
*
68058320 GTCCATTTTGAACTAGATAACTAG
1 GTCCATTTTGAACTAGACAACTAG
68058344 GTCCATTTTGA
1 GTCCATTTTGA
68058355 TTCTTAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (24 bp):
GTCCATTTTGAACTAGACAACTAG
Found at i:68060844 original size:15 final size:15
Alignment explanation
Indices: 68060824--68060875 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
68060814 ACTACAAAAA
68060824 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
68060839 ATTTATAAGTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
68060858 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
68060873 ATT
1 ATT
68060876 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:68060939 original size:16 final size:14
Alignment explanation
Indices: 68060908--68060948 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
68060898 ATGTGAAGAA
68060908 TATTA-TTTAAAAT
1 TATTATTTTAAAAT
*
68060921 TATTATTTTAAAAA
1 TATTATTTTAAAAT
68060935 T-TTATTATTAAAAT
1 TATTATT-TTAAAAT
68060949 AAAATTGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 10 0.42
14 14 0.58
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TATTATTTTAAAAT
Found at i:68062656 original size:21 final size:20
Alignment explanation
Indices: 68062623--68062664 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
68062613 TAAATAAAAC
68062623 AAAAGAAATAAAGAAA-AGA
1 AAAAGAAATAAAGAAACAGA
68062642 AAAAGAGAATGAAAGAAACAGA
1 AAAAGA-AAT-AAAGAAACAGA
68062664 A
1 A
68062665 TGTTTAAACG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 3 0.15
21 7 0.35
22 4 0.20
ACGTcount: A:0.74, C:0.02, G:0.19, T:0.05
Consensus pattern (20 bp):
AAAAGAAATAAAGAAACAGA
Found at i:68063713 original size:6 final size:6
Alignment explanation
Indices: 68063702--68063733 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
68063692 TCTGTACTTG
*
68063702 ACTGTT ACTGTT ACTGCT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT AC
68063734 CATTACGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.44
Consensus pattern (6 bp):
ACTGTT
Found at i:68068866 original size:127 final size:127
Alignment explanation
Indices: 68068708--68068962 Score: 492
Period size: 127 Copynumber: 2.0 Consensus size: 127
68068698 ATGGGTGTTC
*
68068708 ACTTTCCCATTCCCTCTCCAGACAAAGGTCTTTTCGTTTGCATTTAGTTAAGTTCATAGTTTCAA
1 ACTTTCCCATGCCCTCTCCAGACAAAGGTCTTTTCGTTTGCATTTAGTTAAGTTCATAGTTTCAA
68068773 TGTGGCTCACATGCACAGGCACAAACTCACTATGTTTATACATATTTTTCTTCTTTATGATT
66 TGTGGCTCACATGCACAGGCACAAACTCACTATGTTTATACATATTTTTCTTCTTTATGATT
68068835 ACTTTCCCATGCCCTCTCCAGACAAAGGTCTTTTCGTTTGCATTTAGTTAAGTTCATAGTTTCAA
1 ACTTTCCCATGCCCTCTCCAGACAAAGGTCTTTTCGTTTGCATTTAGTTAAGTTCATAGTTTCAA
*
68068900 TGTGGCTCACATGCACAGGCACAAACTTACTATGTTTATACATATTTTTCTTCTTTATGATT
66 TGTGGCTCACATGCACAGGCACAAACTCACTATGTTTATACATATTTTTCTTCTTTATGATT
68068962 A
1 A
68068963 AACTGGTTTC
Statistics
Matches: 126, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
127 126 1.00
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (127 bp):
ACTTTCCCATGCCCTCTCCAGACAAAGGTCTTTTCGTTTGCATTTAGTTAAGTTCATAGTTTCAA
TGTGGCTCACATGCACAGGCACAAACTCACTATGTTTATACATATTTTTCTTCTTTATGATT
Found at i:68072500 original size:97 final size:97
Alignment explanation
Indices: 68072388--68072659 Score: 517
Period size: 97 Copynumber: 2.8 Consensus size: 97
68072378 TAGGGTGCCC
68072388 TATTTCTGTAGGATTTCCATTTTTTGCTACTTTAAGAATCTTTAATTTTTCATTTTTTACTGAAA
1 TATTTCTGTAGGATTTCCATTTTTTGCTACTTTAAGAATCTTTAATTTTTCATTTTTTACTGAAA
68072453 CTTTACCTCTCCTCTAATACGAGCTAGGGCCT
66 CTTTACCTCTCCTCTAATACGAGCTAGGGCCT
68072485 TATTTCTGTAGGATTTCCATTTTTTGCTACTTTAAGAATCTTTAATTTTTCATTTTTTACTGAAA
1 TATTTCTGTAGGATTTCCATTTTTTGCTACTTTAAGAATCTTTAATTTTTCATTTTTTACTGAAA
68072550 CTTTACCTCTCCTCTAATACGAGCTAGGGCCT
66 CTTTACCTCTCCTCTAATACGAGCTAGGGCCT
*
68072582 TATTTCTGTAGGATTTCCATTTTTTGCTACTTTAAGAATCTTTAATTTTTCATTTTTTACTTAAA
1 TATTTCTGTAGGATTTCCATTTTTTGCTACTTTAAGAATCTTTAATTTTTCATTTTTTAC-TGAA
*
68072647 ACTTTACTTCTCC
65 ACTTTACCTCTCC
68072660 AATATTAGCT
Statistics
Matches: 172, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
97 157 0.91
98 15 0.09
ACGTcount: A:0.23, C:0.19, G:0.10, T:0.49
Consensus pattern (97 bp):
TATTTCTGTAGGATTTCCATTTTTTGCTACTTTAAGAATCTTTAATTTTTCATTTTTTACTGAAA
CTTTACCTCTCCTCTAATACGAGCTAGGGCCT
Found at i:68073641 original size:32 final size:29
Alignment explanation
Indices: 68073567--68073648 Score: 94
Period size: 29 Copynumber: 2.7 Consensus size: 29
68073557 AGGTGTTCTA
68073567 AAAGGTCAATAAATTTAGAACTTTTGTAC
1 AAAGGTCAATAAATTTAGAACTTTTGTAC
***
68073596 ATTTGTCAATAAATTTAGAACTTCATT-TAGTC
1 AAAGGTCAATAAATTTAGAACTT--TTGTA--C
68073628 AAAGGTCAATAAATTTAGAAC
1 AAAGGTCAATAAATTTAGAAC
68073649 CTGAGTTGGT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
29 20 0.47
30 2 0.05
31 2 0.05
32 19 0.44
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.35
Consensus pattern (29 bp):
AAAGGTCAATAAATTTAGAACTTTTGTAC
Found at i:68076481 original size:106 final size:106
Alignment explanation
Indices: 68076296--68076507 Score: 352
Period size: 106 Copynumber: 2.0 Consensus size: 106
68076286 ATCACATTTG
* * * *
68076296 CCATTGCATGATTTTATATGATTCTTGGTTGTCGTTTTTCTATTTGTTGTTCTTAGCCCTTGCAT
1 CCATTGCATGATTTTAAATGATTCTTGCTTGTCATTTTTCTATTTGTTGTTCTTACCCCTTGCAT
* * *
68076361 TCCAGGAAGATGAACCGTTGCCACTAACTTGCAGGTTGCAA
66 TCCAGGAAGATGAACCATTGCCACGAACTTGCAGGTCGCAA
*
68076402 CCATTGCATGATTTTAAATTATTCTTGCTTGTCATTTTTCTATTTGTTGTTCTTACCCCTTGCAT
1 CCATTGCATGATTTTAAATGATTCTTGCTTGTCATTTTTCTATTTGTTGTTCTTACCCCTTGCAT
68076467 TCCAGGAAGATGAACCATTGCCACGAACTTGCAGGTCGCAA
66 TCCAGGAAGATGAACCATTGCCACGAACTTGCAGGTCGCAA
68076508 ATTACGCATG
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
106 98 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (106 bp):
CCATTGCATGATTTTAAATGATTCTTGCTTGTCATTTTTCTATTTGTTGTTCTTACCCCTTGCAT
TCCAGGAAGATGAACCATTGCCACGAACTTGCAGGTCGCAA
Found at i:68077628 original size:18 final size:19
Alignment explanation
Indices: 68077595--68077631 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
68077585 AAAATATTTT
*
68077595 TAAAATTATTAAAAAAATA
1 TAAAATTATCAAAAAAATA
68077614 TAAAATTA-CAAAAAAATA
1 TAAAATTATCAAAAAAATA
68077632 AATTTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (19 bp):
TAAAATTATCAAAAAAATA
Found at i:68093503 original size:43 final size:42
Alignment explanation
Indices: 68093437--68093554 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 42
68093427 AGCTCGTACA
68093437 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATTAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATTAAATAT-G
***
68093480 ATGCC-ACTGTCCCAGACAG-GGTCTTACACAAAATTAAATATG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATTAAATATG
* *
68093522 ATGCCAACGTCCCAGATGTGGTCTTACTTGTAA
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAA
68093555 ATCATAAATG
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
41 1 0.02
42 26 0.41
43 35 0.56
44 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.27
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATTAAATATG
Found at i:68114971 original size:20 final size:19
Alignment explanation
Indices: 68114925--68114962 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
68114915 CAAAAAAATC
68114925 TTCATTTTTCTCATACTATT
1 TTCATTTTTCTCATA-TATT
68114945 TTCATTTTTCTCAT-TATT
1 TTCATTTTTCTCATATATT
68114963 CTATCATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
20 14 0.78
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.63
Consensus pattern (19 bp):
TTCATTTTTCTCATATATT
Found at i:68128024 original size:27 final size:27
Alignment explanation
Indices: 68127993--68128170 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68127983 TAAATTGTAC
68127993 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68128020 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68128046 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68128074 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68128102 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68128129 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68128156 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68128171 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68128107 original size:82 final size:81
Alignment explanation
Indices: 68127994--68128149 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68127984 AAATTGTACA
* *
68127994 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68128058 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68128075 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68128140 TGCGAGTTGA
65 TGCGAATTGA
68128150 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68128161 original size:82 final size:81
Alignment explanation
Indices: 68127990--68128170 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
68127980 GATTAAATTG
* *
68127990 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68128055 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68128071 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68128135 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68128153 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68128171 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68130704 original size:17 final size:17
Alignment explanation
Indices: 68130682--68130717 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
68130672 AATAGAGTTA
68130682 AAGTTTGAGTCTATGCC
1 AAGTTTGAGTCTATGCC
68130699 AAGTTTGAGTCTATGCC
1 AAGTTTGAGTCTATGCC
68130716 AA
1 AA
68130718 TAGTATGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (17 bp):
AAGTTTGAGTCTATGCC
Found at i:68159714 original size:28 final size:28
Alignment explanation
Indices: 68159668--68159736 Score: 111
Period size: 28 Copynumber: 2.4 Consensus size: 28
68159658 CTATAATTTC
*
68159668 TAAGGTGAAATTTCGATTAGGCTTGGAA
1 TAAGGAGAAATTTCGATTAGGCTTGGAA
*
68159696 TAGGGAGAAATTTCGATTAGGCTTGGAA
1 TAAGGAGAAATTTCGATTAGGCTTGGAA
68159724 TAAGGAGTAAATT
1 TAAGGAG-AAATT
68159737 GCATAAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
28 32 0.86
29 5 0.14
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (28 bp):
TAAGGAGAAATTTCGATTAGGCTTGGAA
Found at i:68160249 original size:22 final size:21
Alignment explanation
Indices: 68160210--68160250 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
68160200 GCTTGATAAT
**
68160210 GTTTGAAAAATGTTAAATCCC
1 GTTTGAAAAATGAAAAATCCC
68160231 GTTTGAATAAATGAAAAATC
1 GTTTGAA-AAATGAAAAATC
68160251 GATGGATATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.32
Consensus pattern (21 bp):
GTTTGAAAAATGAAAAATCCC
Found at i:68162856 original size:8 final size:8
Alignment explanation
Indices: 68162843--68162871 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
68162833 AACCTTAAAC
68162843 CCTAAAAT
1 CCTAAAAT
68162851 CCT-AAAT
1 CCTAAAAT
68162858 CCTAAAAT
1 CCTAAAAT
68162866 CCTAAA
1 CCTAAA
68162872 CCCCAAATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (8 bp):
CCTAAAAT
Found at i:68162861 original size:15 final size:15
Alignment explanation
Indices: 68162838--68162874 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
68162828 ACCTAAACCT
68162838 TAAACCCTAAAATCC
1 TAAACCCTAAAATCC
*
68162853 TAAATCCTAAAATCC
1 TAAACCCTAAAATCC
68162868 TAAACCC
1 TAAACCC
68162875 CAAATGGTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (15 bp):
TAAACCCTAAAATCC
Found at i:68166639 original size:13 final size:13
Alignment explanation
Indices: 68166630--68166654 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68166620 TCGTTCTCTT
68166630 TTTCTTTTCTTTA
1 TTTCTTTTCTTTA
68166643 TTTCTTTTCTTT
1 TTTCTTTTCTTT
68166655 TCTTTCATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTCTTTTCTTTA
Found at i:68166652 original size:18 final size:19
Alignment explanation
Indices: 68166629--68166664 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
68166619 TTCGTTCTCT
68166629 TTTTCTTTTCTTT-ATTTC
1 TTTTCTTTTCTTTCATTTC
68166647 TTTTCTTTTCTTTCATTT
1 TTTTCTTTTCTTTCATTT
68166665 ACTATTATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTCTTTTCTTTCATTTC
Found at i:68166920 original size:138 final size:135
Alignment explanation
Indices: 68166676--68166925 Score: 308
Period size: 137 Copynumber: 1.8 Consensus size: 135
68166666 CTATTATGTT
* *
68166676 TTAATTAAATTATAATATAATATTATTCTTAAATAATAAGTAAGTATACATGTATATTACAAACG
1 TTAATTAAATTATAAAATAATAATATTCTTAAATAATAAGTAAGTATACATG-ATATTACAAACG
* *
68166741 TATATATATCATTGGTACACATATAAATTATTATTACCACACACTTGTTTTTATTTAATTATTTA
65 TATATAAATCATTAGTACACATATAAATTATTATTACCACACACTTGTTTTTATTTAATTATTTA
68166806 CTTTAA
130 CTTTAA
*
68166812 TTAATT-AATTATAAAATAATAATATTTACTTAAATAATAAGTAATTACATACATG-TATTACAA
1 TTAATTAAATTATAAAATAATAATA-TT-CTTAAATAATAAGTAAGT--ATACATGATATTACAA
* * * ** * *
68166875 ATGTATGTACAAT-ATTTATTACACATATATTTTATTTTTATCACACACTTG
62 ACGTATATA-AATCA-TTAGTACACATATAAATTATTATTACCACACACTTG
68166926 GCATTCACTT
Statistics
Matches: 96, Mismatches: 12, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
135 16 0.17
136 8 0.08
137 33 0.34
138 32 0.33
139 7 0.07
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.44
Consensus pattern (135 bp):
TTAATTAAATTATAAAATAATAATATTCTTAAATAATAAGTAAGTATACATGATATTACAAACGT
ATATAAATCATTAGTACACATATAAATTATTATTACCACACACTTGTTTTTATTTAATTATTTAC
TTTAA
Found at i:68170731 original size:12 final size:12
Alignment explanation
Indices: 68170714--68170797 Score: 50
Period size: 12 Copynumber: 6.6 Consensus size: 12
68170704 TAAGATATGT
68170714 ATATAAATAATA
1 ATATAAATAATA
68170726 ATATAAAT-ATA
1 ATATAAATAATA
68170737 TATATAATGTATAATA
1 -ATATAA---ATAATA
68170753 CATA-AAATAAT-
1 -ATATAAATAATA
68170764 ATATGAAAAGTAATA
1 ATAT--AAA-TAATA
68170779 ATATAGAA-AATA
1 ATATA-AATAATA
*
68170791 AAATAAA
1 ATATAAA
68170798 ACAATCTTTA
Statistics
Matches: 59, Mismatches: 2, Indels: 23
0.70 0.02 0.27
Matches are distributed among these distances:
10 3 0.05
11 5 0.08
12 27 0.46
13 4 0.07
14 6 0.10
15 8 0.14
16 6 0.10
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:68170795 original size:17 final size:18
Alignment explanation
Indices: 68170754--68170796 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
68170744 TGTATAATAC
68170754 ATAAAATAATATATGAAA
1 ATAAAATAATATATGAAA
68170772 AGT--AATAATATA-GAAA
1 A-TAAAATAATATATGAAA
68170788 ATAAAATAA
1 ATAAAATAA
68170797 AACAATCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
15 1 0.05
16 5 0.23
17 14 0.64
18 1 0.05
19 1 0.05
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (18 bp):
ATAAAATAATATATGAAA
Found at i:68172129 original size:25 final size:25
Alignment explanation
Indices: 68172096--68172154 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
68172086 CTTCATGAGT
68172096 TTTGGGTCTTGTAAGGGTTT-TTGGG
1 TTTGGGTCTTGTAA-GGTTTATTGGG
68172121 TTTGGGTCTTGTAAGGTTTATTGGG
1 TTTGGGTCTTGTAAGGTTTATTGGG
68172146 TTTGGGTCT
1 TTTGGGTCT
68172155 GCTGTAGGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 5 0.15
25 28 0.85
ACGTcount: A:0.08, C:0.05, G:0.37, T:0.49
Consensus pattern (25 bp):
TTTGGGTCTTGTAAGGTTTATTGGG
Found at i:68172958 original size:132 final size:132
Alignment explanation
Indices: 68172719--68173457 Score: 1205
Period size: 132 Copynumber: 5.6 Consensus size: 132
68172709 ATCTGTTATG
* * * *
68172719 TCTTCAATTTGTTCCCTATAAACAC-GAGGATGCCAAATCTACTATCTTCAACTTGTTCCCTATA
1 TCTTCGATCTGTTCCCTATAAACACAG-GGATGCCAAATCTGCTATCTTCAACTTGTTCCCAATA
* * * * * **
68172783 AACACAGGGATGCCATGTTAAAATCTTTGATCTGTTTCGCTGTAAGCACAGGAACGTCAGATCTG
65 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTG
68172848 CTA
130 CTA
68172851 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTAT-TCTCAACTTGTTCCCAATA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCT-TCAACTTGTTCCCAATA
* * *
68172915 AACACGGGGATGCCATGCTGAAATCTTCGATCTGTTTTACTGTAAGCACAGGAGTGTCAGATCTG
65 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTG
68172980 CTA
130 CTA
68172983 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCAATAA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCAATAA
* * *
68173048 ACATAGGGATGCCATGTTGAAATCTTCGATCTGCTTCACTGTAAGCACATGAGTGTCAGATCTGC
66 ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTGC
68173113 TA
131 TA
*
68173115 TCTTCGATCTGTTCCCTATAACCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCAATAA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCAATAA
* * *
68173180 ACACAGAGATGCCATTCTAAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTGC
66 ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTGC
68173245 TA
131 TA
68173247 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTAT-TCTCAACTTGTTCCCAATA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCT-TCAACTTGTTCCCAATA
* * *
68173311 AACACAGGGATGCCATGCTGAAATCTTCAATCTGCTTCGCTGTAAGAACAGGAGTGTCAGATCTG
65 AACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTG
68173376 CTA
130 CTA
*
68173379 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATTTGCTATCTTCAACTTGTTCCCAATAA
1 TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCAATAA
68173444 ACACAGGGATGCCA
66 ACACAGGGATGCCA
68173458 AATCTTTTTT
Statistics
Matches: 569, Mismatches: 33, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
131 2 0.00
132 564 0.99
133 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (132 bp):
TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCAATAA
ACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTGC
TA
Found at i:68172965 original size:88 final size:87
Alignment explanation
Indices: 68172850--68173457 Score: 324
Period size: 88 Copynumber: 6.9 Consensus size: 87
68172840 CAGATCTGCT
*
68172850 ATCTTCGATCTGTTCCCTATAAACACAGG-GATGCCAAATCTGCTAT-TCTCAA-CTTGTTCCCA
1 ATCTTCGATCTGTTCACTATAAACACAGGAG-TGCCAAATCTGCTATCT-TCAATC-TGTTCCCA
*
68172912 ATAAACACGGGGATGCCATGCTGAA
63 ATAAACACAGGGATGCCATGCTGAA
* * * * * * *
68172937 ATCTTCGATCTGTTTTACTGTAAGCACAGGAGTGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTG-TTCACTATAAACACAGGAGTGCCAAATCTGCTATCTTCAATCTGTTCCCAAT
**
68173002 AAACACAGGGATGCCAAAT-CTGCT
65 AAACACAGGGATGCC--ATGCTGAA
* * * * ** ** * * *
68173026 ATCTTC-AACTTGTTCCCAATAAACATAGG-GATGCCATGT-TGAAATCTTCGATCTGCTTCACT
1 ATCTTCGATC-TGTTCACTATAAACACAGGAG-TGCCAAATCTGCTATCTTCAATCTG-TTCCCA
* * * * **
68173088 GTAAGCACA-TGAGTGTCA-GATCTGCT
63 ATAAACACAGGGA-TGCCATG--CTGAA
* *
68173114 ATCTTCGATCTGTTCCCTATAACCACAGG-GATGCCAAATCTGCTATCTTCAA-CTTGTTCCCAA
1 ATCTTCGATCTGTTCACTATAAACACAGGAG-TGCCAAATCTGCTATCTTCAATC-TGTTCCCAA
* * *
68173177 TAAACACAGAGATGCCATTCTAAA
64 TAAACACAGGGATGCCATGCTGAA
* * * * * *
68173201 ATCTTCGATCTGCTTCACTGTAAGCACAGGAGTGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTG-TTCACTATAAACACAGGAGTGCCAAATCTGCTATCTTCAATCTGTTCCCAAT
**
68173266 AAACACAGGGATGCCAAAT-CTGCT
65 AAACACAGGGATGCC--ATGCTGAA
* * * ** *
68173290 AT-TCTC-AACTTGTTCCCAATAAACACAGG-GATGCC--ATGCTGAAATCTTCAATCTGCTTCG
1 ATCT-TCGATC-TGTTCACTATAAACACAGGAG-TGCCAAAT-CTGCTATCTTCAATCTG-TTCC
** * **
68173350 CTGTAAGA-ACA-GGAGTGTCA-GATCTGCT
61 CAATAA-ACACAGGGA-TGCCATG--CTGAA
* *
68173378 ATCTTCGATCTGTTCCCTATAAACACAGG-GATGCCAAATTTGCTATCTTCAA-CTTGTTCCCAA
1 ATCTTCGATCTGTTCACTATAAACACAGGAG-TGCCAAATCTGCTATCTTCAATC-TGTTCCCAA
68173441 TAAACACAGGGATGCCA
64 TAAACACAGGGATGCCA
68173458 AATCTTTTTT
Statistics
Matches: 402, Mismatches: 79, Indels: 79
0.72 0.14 0.14
Matches are distributed among these distances:
86 4 0.01
87 62 0.15
88 272 0.68
89 58 0.14
90 6 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (87 bp):
ATCTTCGATCTGTTCACTATAAACACAGGAGTGCCAAATCTGCTATCTTCAATCTGTTCCCAATA
AACACAGGGATGCCATGCTGAA
Found at i:68174367 original size:6 final size:6
Alignment explanation
Indices: 68174356--68174388 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
68174346 CATTTATTTA
68174356 TTTATT TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTT
68174389 CCTTTTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:68174394 original size:18 final size:18
Alignment explanation
Indices: 68174356--68174394 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
68174346 CATTTATTTA
*
68174356 TTTATTTTTATTTTTATT
1 TTTATTTTTATTTTTACT
*
68174374 TTTATTTTTATTTTTCCT
1 TTTATTTTTATTTTTACT
68174392 TTT
1 TTT
68174395 TTTAAATAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.13, C:0.05, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTATTTTTATTTTTACT
Found at i:68178216 original size:16 final size:14
Alignment explanation
Indices: 68178175--68178227 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 14
68178165 TCTATAATTT
68178175 TGAATGCAAATG-A
1 TGAATGCAAATGCA
68178188 TGCAATG-AAATGCTA
1 TG-AATGCAAATGC-A
68178203 TGAGATGCAAATGCA
1 TGA-ATGCAAATGCA
68178218 TGAATGCAAA
1 TGAATGCAAA
68178228 AGGTATCGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 7 0.20
14 12 0.34
15 10 0.29
16 6 0.17
ACGTcount: A:0.43, C:0.11, G:0.23, T:0.23
Consensus pattern (14 bp):
TGAATGCAAATGCA
Found at i:68178298 original size:50 final size:50
Alignment explanation
Indices: 68178233--68178332 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
68178223 GCAAAAGGTA
68178233 TCGATCTCGATTCAATCTCATTTAAAAAACTTCATTTAGAAAAAGAATAT
1 TCGATCTCGATTCAATCTCATTTAAAAAACTTCATTTAGAAAAAGAATAT
68178283 TCGATCTCGATTCAATCTCATTTAAAAAACTTCATTTAGAAAAAGAATAT
1 TCGATCTCGATTCAATCTCATTTAAAAAACTTCATTTAGAAAAAGAATAT
68178333 CTTTACATAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.34
Consensus pattern (50 bp):
TCGATCTCGATTCAATCTCATTTAAAAAACTTCATTTAGAAAAAGAATAT
Found at i:68193184 original size:40 final size:40
Alignment explanation
Indices: 68193084--68193338 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
68193074 GGATGATAAT
* *
68193084 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTCACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATC
68193124 CGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
68193163 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
68193203 CGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATATC
*
68193243 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
68193283 CGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
**
68193322 C-GGCTAAACCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
68193339 TACTTGGTTG
Statistics
Matches: 201, Mismatches: 9, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
38 17 0.08
39 46 0.23
40 136 0.68
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:68201441 original size:40 final size:40
Alignment explanation
Indices: 68201334--68201589 Score: 362
Period size: 40 Copynumber: 6.5 Consensus size: 40
68201324 TGGATGATAA
* * *
68201334 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
68201374 CCGGGC-AAGTCCCGAAGACATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
68201413 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
68201453 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
*
68201493 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
68201533 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
68201572 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
68201590 TACTTGGTTG
Statistics
Matches: 199, Mismatches: 12, Indels: 12
0.89 0.05 0.05
Matches are distributed among these distances:
38 17 0.09
39 44 0.22
40 136 0.68
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:68205164 original size:25 final size:25
Alignment explanation
Indices: 68205131--68205189 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
68205121 CTTCATGAGT
*
68205131 TTTGGGTCTTGTAAGGGTTT-TTGGG
1 TTTGGGTCTTGTAA-GGTTTATTAGG
68205156 TTTGGGTCTTGTAAGGTTTATTAGG
1 TTTGGGTCTTGTAAGGTTTATTAGG
68205181 TTTGGGTCT
1 TTTGGGTCT
68205190 GCTGTAGGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 5 0.16
25 27 0.84
ACGTcount: A:0.10, C:0.05, G:0.36, T:0.49
Consensus pattern (25 bp):
TTTGGGTCTTGTAAGGTTTATTAGG
Found at i:68210310 original size:43 final size:43
Alignment explanation
Indices: 68210261--68210346 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
68210251 AGGGTAAATC
* * * *
68210261 CAACAACCCATGTTTATCTTTTCCTCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTATTTTTT
*
68210304 CAACAACCCAAGATTATCTTCTCCTCTTTTTTAATTATTTTTT
1 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTATTTTTT
68210347 TAGGATAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.23, C:0.23, G:0.02, T:0.51
Consensus pattern (43 bp):
CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTATTTTTT
Found at i:68210801 original size:3 final size:3
Alignment explanation
Indices: 68210795--68211624 Score: 1660
Period size: 3 Copynumber: 276.7 Consensus size: 3
68210785 CTTTTTTTCT
68210795 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68210843 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68210891 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68210939 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68210987 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68211035 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68211083 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68211131 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68211179 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68211227 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68211275 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68211323 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68211371 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68211419 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68211467 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68211515 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68211563 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68211611 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
68211625 CTTTTTCTTT
Statistics
Matches: 827, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 827 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:68213389 original size:29 final size:29
Alignment explanation
Indices: 68213333--68213392 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
68213323 TTTCTGAGCC
* *
68213333 TTAGGGCAAAAGTGTAAATATGTAAAAGT
1 TTAGGGAAAAAGTGTAAATATGCAAAAGT
* * *
68213362 TTAGGGAAAAAGTGTAATTTTGCCAAAGT
1 TTAGGGAAAAAGTGTAAATATGCAAAAGT
68213391 TT
1 TT
68213393 GAGTCAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.32
Consensus pattern (29 bp):
TTAGGGAAAAAGTGTAAATATGCAAAAGT
Found at i:68213911 original size:53 final size:53
Alignment explanation
Indices: 68213729--68213983 Score: 241
Period size: 55 Copynumber: 4.8 Consensus size: 53
68213719 ATTAGGGTTT
* * * * *
68213729 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-GTTTATAAGGC
* * *
68213784 AAAGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTAACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGT--TTATAAGGC
* * * *
68213839 AAAGG-TCCCATGTAAGACCATGTCGAGGCATGGCATTGGTGAGTTTATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTATAAGGC
* * *
68213892 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTT-CAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTATAAGGC
* * * * * *
68213941 AAGGATACCACGTAAGGCCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
68213984 GTACCTGTGT
Statistics
Matches: 170, Mismatches: 26, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
49 37 0.22
52 6 0.04
53 47 0.28
54 7 0.04
55 70 0.41
56 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTATAAGGC
Found at i:68213935 original size:108 final size:110
Alignment explanation
Indices: 68213739--68213935 Score: 299
Period size: 108 Copynumber: 1.8 Consensus size: 110
68213729 AAGGATACCG
* *
68213739 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGTAAAGATACCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGCAAAGATACCATGTAAGACCA
*
68213804 TGTCAAGACATGGCATTGATAAGTAACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTAACTATAAGGCAAAGGTCCCA
* * * *
68213849 TGTAAGACCATGTCGAGGCATGGC-ATTGGTGA-GTTTATAAGGCAAGGATACCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGCAAAGATACCATGTAAGACCA
* *
68213912 TGTCGAGACATGGCAATGGTAAGT
66 TGTCAAGACATGGCAATGATAAGT
68213936 TTCAAAAGGA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
108 49 0.63
109 7 0.09
110 22 0.28
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGCAAAGATACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTAACTATAAGGCAAAGGTCCCA
Found at i:68214078 original size:23 final size:24
Alignment explanation
Indices: 68214052--68214099 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
68214042 AAGGTAAGGT
*
68214052 AAGGTAAGACGAGTT-ATACTAGA
1 AAGGTAAGACAAGTTCATACTAGA
* *
68214075 AAGGTATGACAAGTTCATGCTAGA
1 AAGGTAAGACAAGTTCATACTAGA
68214099 A
1 A
68214100 CAGTAAAAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.42, C:0.10, G:0.25, T:0.23
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATACTAGA
Found at i:68214196 original size:16 final size:16
Alignment explanation
Indices: 68214175--68214205 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68214165 ATAAATTTGA
68214175 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
68214191 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
68214206 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:68221387 original size:55 final size:53
Alignment explanation
Indices: 68221266--68221520 Score: 202
Period size: 55 Copynumber: 4.8 Consensus size: 53
68221256 ATTAGGGTTT
* **
68221266 AAGGATACCATGTAAGACCATG-CAAAGGCATGAAAATTGGTAAGGCTTC-TAA-GA
1 AAGGATACCATGTAAGACCATGTC-AAGACATG-GCATTGGTAA-G-TTCATAAGGA
*
68221320 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAA
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGG-A
* * * * *
68221377 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGA
* ** * *
68221429 AAGGATACCATATAAGACCATGTTGAGACATGGCAATGGTAAGTT--TCA--A
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGA
* * * * * *
68221478 AAGGATACCACGTGAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
68221521 GTACCCTTGT
Statistics
Matches: 165, Mismatches: 28, Indels: 20
0.77 0.13 0.09
Matches are distributed among these distances:
49 35 0.21
51 2 0.01
52 6 0.04
53 40 0.24
54 8 0.05
55 67 0.41
56 6 0.04
57 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGA
Found at i:68221472 original size:108 final size:110
Alignment explanation
Indices: 68221273--68221473 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
68221263 TTTAAGGATA
*
68221273 CCATGTAAGACCATGCAAAGGCATGAAAATTGGTAAGGCTTCTAAGACAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCAAAGGCATGAAAATTGGTAAGGCTTCTAAGACAAGGATACCATATAAGA
*
68221338 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAGGTC
* ** * *
68221383 CCATGTAAGACCATGCCAAGGCATG-GCATTGGTGA-G-TTCATAAGGCAAGGATACCATATAAG
1 CCATGTAAGACCATGCAAAGGCATGAAAATTGGTAAGGCTTC-TAAGACAAGGATACCATATAAG
** *
68221445 ACCATGTTGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
68221474 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 24 0.30
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCAAAGGCATGAAAATTGGTAAGGCTTCTAAGACAAGGATACCATATAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAGGTC
Found at i:68226792 original size:40 final size:40
Alignment explanation
Indices: 68226702--68226848 Score: 206
Period size: 40 Copynumber: 3.6 Consensus size: 40
68226692 GATATCTCGT
* **
68226702 ACACTAAGTGCCATTACATAGCCGAATCTAT-TTTAATCTCGC
1 ACACTAAGTGCCA-TACATAGCCGAAGCTATCTCGAA--TCGC
*
68226744 ACGCTAAGTGCCATACATAGCCGAAGCTATCTCGAATCGC
1 ACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCGC
*
68226784 ACACTAAGTGCCATACATAGCCAAAGCTATCTCGAATCGC
1 ACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCGC
*
68226824 ACACTAAGTGCCATATATAGCCGAA
1 ACACTAAGTGCCATACATAGCCGAA
68226849 CCATTGTCAA
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 65 0.68
41 16 0.17
42 15 0.16
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (40 bp):
ACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCGC
Found at i:68227357 original size:21 final size:20
Alignment explanation
Indices: 68227333--68227372 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
68227323 ACTTGTTTAA
68227333 CTATCAACAAACATTCAAAAT
1 CTATCAACAAACA-TCAAAAT
* *
68227354 CTATCATCAATCATCAAAA
1 CTATCAACAAACATCAAAA
68227373 ATCATACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (20 bp):
CTATCAACAAACATCAAAAT
Found at i:68229200 original size:59 final size:59
Alignment explanation
Indices: 68229108--68229227 Score: 222
Period size: 59 Copynumber: 2.0 Consensus size: 59
68229098 AATTGATCAA
*
68229108 GTAAATAACTAAGAATGATATGGTAAAGATACAATGACAAAAAATAAAGGATATATGAT
1 GTAAATAACTAAGAATGATATGGTAAAGATACAACGACAAAAAATAAAGGATATATGAT
*
68229167 GTAAATAACTAAGAATGATATGGTAAAGATACAACGACAAAGAATAAAGGATATATGAT
1 GTAAATAACTAAGAATGATATGGTAAAGATACAACGACAAAAAATAAAGGATATATGAT
68229226 GT
1 GT
68229228 TGATTTTGAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.53, C:0.06, G:0.18, T:0.23
Consensus pattern (59 bp):
GTAAATAACTAAGAATGATATGGTAAAGATACAACGACAAAAAATAAAGGATATATGAT
Found at i:68229961 original size:40 final size:43
Alignment explanation
Indices: 68229916--68229999 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
68229906 AGGGTAAATC
* * *
68229916 CAACAAACCATGTTTATC-T-T-CTCTTTTTAAATTCTTTTTT
1 CAACAAACCAAGATTATCTTCTCCTCTTTTTAAATTCATTTTT
*
68229956 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCATTTTT
1 CAACAAACCAAGATTATCTTCTCCTCTTTTTAAATTCATTTTT
68229999 C
1 C
68230000 TAGGATAAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
40 15 0.41
41 1 0.03
42 1 0.03
43 20 0.54
ACGTcount: A:0.26, C:0.24, G:0.02, T:0.48
Consensus pattern (43 bp):
CAACAAACCAAGATTATCTTCTCCTCTTTTTAAATTCATTTTT
Found at i:68232067 original size:30 final size:30
Alignment explanation
Indices: 68232031--68232100 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
68232021 TATGTGGTAG
*
68232031 CCGTGTGTCTCACACGGCCAAGTCACACTC
1 CCGTGTGTCTCACACGACCAAGTCACACTC
68232061 CCGTGTGTCTCACACGACCAAGTCACACTC
1 CCGTGTGTCTCACACGACCAAGTCACACTC
68232091 CCGTGTGTCT
1 CCGTGTGTCT
68232101 AGTCGTGTGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.19, C:0.39, G:0.20, T:0.23
Consensus pattern (30 bp):
CCGTGTGTCTCACACGACCAAGTCACACTC
Found at i:68256634 original size:15 final size:14
Alignment explanation
Indices: 68256616--68256645 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
68256606 TTCTTTTTGG
68256616 TCTTTCTTGTTTTTT
1 TCTTTCTT-TTTTTT
68256631 TCTTTCTTTTTTTT
1 TCTTTCTTTTTTTT
68256645 T
1 T
68256646 GAACAAGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.83
Consensus pattern (14 bp):
TCTTTCTTTTTTTT
Found at i:68257352 original size:21 final size:21
Alignment explanation
Indices: 68257328--68257407 Score: 79
Period size: 21 Copynumber: 3.8 Consensus size: 21
68257318 GTCCCTGGTC
* *
68257328 CACATGGGCATGTGCCTTAGT
1 CACACGGGCATGTGCCTTAAT
* *
68257349 CACACGGCCATGTGCCTTACTT
1 CACACGGGCATGTGCCTTA-AT
* * *
68257371 CACATGGGCGTGTGCCTCAAT
1 CACACGGGCATGTGCCTTAAT
*
68257392 CACACGGGCGTGTGCC
1 CACACGGGCATGTGCC
68257408 CCTCCTCATT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
21 33 0.67
22 16 0.33
ACGTcount: A:0.17, C:0.31, G:0.28, T:0.24
Consensus pattern (21 bp):
CACACGGGCATGTGCCTTAAT
Found at i:68260406 original size:30 final size:30
Alignment explanation
Indices: 68260372--68260465 Score: 172
Period size: 30 Copynumber: 3.2 Consensus size: 30
68260362 ATGAATTGGA
68260372 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAAACT
68260402 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAAACT
*
68260432 AGCTTTGGCACTAAGTGTGCGATTT-ATCT
1 AGCTTTGGCACTAAGTGTGCGATTTAAACT
68260461 AGCTT
1 AGCTT
68260466 CGGCTACTTG
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
29 8 0.13
30 55 0.87
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (30 bp):
AGCTTTGGCACTAAGTGTGCGATTTAAACT
Found at i:68265885 original size:153 final size:154
Alignment explanation
Indices: 68265607--68265914 Score: 537
Period size: 153 Copynumber: 2.0 Consensus size: 154
68265597 TGCTTTTAAA
*
68265607 AACAAGATTTTCTAAGGTTCATATATGTTCTGGCCATTGCAAATATCTCCTAGCTTACTCAGTTC
1 AACAAGATTTTCTAAGGTTCATATATGTCCTGGCCATTGCAAATATCTCCTAGCTTACTCAGTTC
*
68265672 ATTTATTACCCAAACTCAGGTCACTCCTGCTTTAAGCATACATGTACAAGCTTAATATTTTTTTA
66 ATTTATTACCCAAACTCAGGTCACTCCTACTTTAAGCATACATGTACAAGCTTAATATTTTTTTA
*
68265737 GATAAAATATATGTATATT-AGGG
131 AATAAAATATATGTATATTAAGGG
* *
68265760 AACAAGATTTTCTAAGGTTCATTTATGTCCTGGCCATTGCACATATCTCCTAGCTTACTCAGTTC
1 AACAAGATTTTCTAAGGTTCATATATGTCCTGGCCATTGCAAATATCTCCTAGCTTACTCAGTTC
* *
68265825 ATTTATTACCCAAACTCAGGTCACTCCTACTTTAAGCATACATGTACAATCTTACTATTTTTTTA
66 ATTTATTACCCAAACTCAGGTCACTCCTACTTTAAGCATACATGTACAAGCTTAATATTTTTTTA
*
68265890 AATAAATTATATGTATATTAAGGG
131 AATAAAATATATGTATATTAAGGG
68265914 A
1 A
68265915 TTAAACATGT
Statistics
Matches: 146, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
153 141 0.97
154 5 0.03
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (154 bp):
AACAAGATTTTCTAAGGTTCATATATGTCCTGGCCATTGCAAATATCTCCTAGCTTACTCAGTTC
ATTTATTACCCAAACTCAGGTCACTCCTACTTTAAGCATACATGTACAAGCTTAATATTTTTTTA
AATAAAATATATGTATATTAAGGG
Found at i:68266688 original size:20 final size:20
Alignment explanation
Indices: 68266659--68266699 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
68266649 TTTTTACAAC
68266659 AAATGACATGGCAAAAGAAA
1 AAATGACATGGCAAAAGAAA
* *
68266679 AAATGCCATGGCACAAGAAA
1 AAATGACATGGCAAAAGAAA
68266699 A
1 A
68266700 TGATATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.56, C:0.15, G:0.20, T:0.10
Consensus pattern (20 bp):
AAATGACATGGCAAAAGAAA
Found at i:68267044 original size:24 final size:24
Alignment explanation
Indices: 68267012--68267065 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
68267002 CAACTAATGT
* *
68267012 TTGAGTAGGTGCCTCGGTAGTAGG
1 TTGAGTAGGTGCCTCAGTAGTAGC
* *
68267036 TTGAGTAGGTGCTTTAGTAGTAGC
1 TTGAGTAGGTGCCTCAGTAGTAGC
68267060 TTGAGT
1 TTGAGT
68267066 GGGCTCCTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.19, C:0.09, G:0.37, T:0.35
Consensus pattern (24 bp):
TTGAGTAGGTGCCTCAGTAGTAGC
Found at i:68269211 original size:5 final size:5
Alignment explanation
Indices: 68269198--68269254 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
68269188 CAAATTTAAC
* *
68269198 AAAG- AAAGG AAAGG AAAGA AAAGA AAAGA AAAGA AAAGAA AGAAGA AAAGA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAG-A A-AAGA AAAGA
68269249 AGAAGA
1 A-AAGA
68269255 TAGTCATGCA
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
4 4 0.08
5 33 0.69
6 8 0.17
7 3 0.06
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:68269476 original size:12 final size:12
Alignment explanation
Indices: 68269459--68269483 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68269449 AAAATAGGGC
68269459 TTTAGCGGCGTT
1 TTTAGCGGCGTT
68269471 TTTAGCGGCGTT
1 TTTAGCGGCGTT
68269483 T
1 T
68269484 ATCAAAAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.32, T:0.44
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:68269769 original size:40 final size:41
Alignment explanation
Indices: 68269538--68269797 Score: 328
Period size: 41 Copynumber: 6.4 Consensus size: 41
68269528 CGTTTTACCA
* * * * *
68269538 AAAACGTCGCTAAAAA-TAGAGCAATAGCGGCGCTTTTTGTT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGC-TTTCGAT
*
68269579 AAAACGCCGCTAAAAATCAGAGCATTAGCGGCGCTTTCGAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGAT
* *
68269620 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGAT
* *
68269661 AAAACGCCGCTAAAAACCAGAGCATTAACTGCGCTTTCGAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGAT
* * *
68269702 AAAACGCCGCTAAAAACTAGAGAATTAGCGGCCCTTTCGAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGAT
* *
68269743 -AAATGCCACTAAAAACCAGAGCATTAGCGGCGCTTTC-AGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGA-T
* *
68269783 AAAACGTCGTTAAAA
1 AAAACGCCGCTAAAA
68269798 GTCATATAAT
Statistics
Matches: 190, Mismatches: 26, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 33 0.17
41 141 0.74
42 15 0.08
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGAT
Found at i:68274250 original size:11 final size:11
Alignment explanation
Indices: 68274234--68274264 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
68274224 TGCTTGGATG
68274234 TTGGTTTTGGT
1 TTGGTTTTGGT
68274245 TTGGTTTTGGT
1 TTGGTTTTGGT
*
68274256 TTAGTTTTG
1 TTGGTTTTG
68274265 TTCTTTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.03, C:0.00, G:0.32, T:0.65
Consensus pattern (11 bp):
TTGGTTTTGGT
Found at i:68275411 original size:43 final size:43
Alignment explanation
Indices: 68275344--68275446 Score: 152
Period size: 43 Copynumber: 2.4 Consensus size: 43
68275334 ATATATATGG
* * * *
68275344 TCTTTAGTGGCGTTTTTGGGGAAAGAGCCGCTAAAGGTCATGA
1 TCTTTAGCGGCGTTTTTAGAGAAAGAGCCGCTAAAAGTCATGA
*
68275387 TCTTTAGCGGCGTTTTTAGAGAAAGCGCCGCTAAAAGTCATGA
1 TCTTTAGCGGCGTTTTTAGAGAAAGAGCCGCTAAAAGTCATGA
*
68275430 CCTTTAGCGGCGTTTTT
1 TCTTTAGCGGCGTTTTT
68275447 TTCTCAAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.32
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTTTAGAGAAAGAGCCGCTAAAAGTCATGA
Found at i:68276570 original size:43 final size:43
Alignment explanation
Indices: 68276522--68276607 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
68276512 TATGCGATTG
68276522 ATATTGAAATGGAAAAAATGAGAAATGAATATGAGATGAGAAA
1 ATATTGAAATGGAAAAAATGAGAAATGAATATGAGATGAGAAA
* * *
68276565 ATATTGAAATGGAAAATATGAGATATGATTATGAGATGAGAAA
1 ATATTGAAATGGAAAAAATGAGAAATGAATATGAGATGAGAAA
68276608 TGAAATATGA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.52, C:0.00, G:0.23, T:0.24
Consensus pattern (43 bp):
ATATTGAAATGGAAAAAATGAGAAATGAATATGAGATGAGAAA
Found at i:68276579 original size:15 final size:15
Alignment explanation
Indices: 68276522--68276583 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 15
68276512 TATGCGATTG
68276522 ATATTGAAATGGAAA
1 ATATTGAAATGGAAA
* *
68276537 AAATGAGAAAT-G--A
1 ATAT-TGAAATGGAAA
*
68276550 ATA-TGAGATGAGAAA
1 ATATTGAAATG-GAAA
68276565 ATATTGAAATGGAAA
1 ATATTGAAATGGAAA
68276580 ATAT
1 ATAT
68276584 GAGATATGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 12
0.66 0.11 0.23
Matches are distributed among these distances:
11 4 0.11
13 4 0.11
15 16 0.46
16 11 0.31
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (15 bp):
ATATTGAAATGGAAA
Found at i:68281735 original size:138 final size:138
Alignment explanation
Indices: 68281487--68281764 Score: 475
Period size: 138 Copynumber: 2.0 Consensus size: 138
68281477 CTGTTTTTTG
*
68281487 AGACAAAATCAACATAAGCAATTGGAAAAATCCTACTTGAAGTAAGTCTAAACATACATAAAGAT
1 AGACAAAATCAACAAAAGCAATTGGAAAAATCCTACTTGAAGTAAGTCTAAACATACATAAAGAT
*
68281552 CAGCATCCATTTACAAGCTTTTTAACAGTATACAATAAAATCAAGCTTCTGCTAATAGAGAAAAC
66 CAGCATCCATTTACAAGCTTTTTAACAGTAAACAATAAAATCAAGCTTCTGCTAATAGAGAAAAC
*
68281617 ATTCTATA
131 ATCCTATA
* *
68281625 AGACAAAATCAACAAAAGCAATTGGAAAAATCCTACTTGAAGTACGTCTAAACATACTTAAAGAT
1 AGACAAAATCAACAAAAGCAATTGGAAAAATCCTACTTGAAGTAAGTCTAAACATACATAAAGAT
* * * *
68281690 CAGCATCCGTTTACAAGCTTTTTGACAGTAAACAATAAAATCAAGCTTCTGTTAATAGAGAAATC
66 CAGCATCCATTTACAAGCTTTTTAACAGTAAACAATAAAATCAAGCTTCTGCTAATAGAGAAAAC
68281755 ATCCTATA
131 ATCCTATA
68281763 AG
1 AG
68281765 CGACGTAATA
Statistics
Matches: 131, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
138 131 1.00
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.26
Consensus pattern (138 bp):
AGACAAAATCAACAAAAGCAATTGGAAAAATCCTACTTGAAGTAAGTCTAAACATACATAAAGAT
CAGCATCCATTTACAAGCTTTTTAACAGTAAACAATAAAATCAAGCTTCTGCTAATAGAGAAAAC
ATCCTATA
Found at i:68291290 original size:38 final size:38
Alignment explanation
Indices: 68291247--68291348 Score: 143
Period size: 38 Copynumber: 2.7 Consensus size: 38
68291237 CTTAAAAACT
* *
68291247 CGCAGGCTTTATGCTGGAATTATATCCGGGTTAAATCC
1 CGCAGGCTTTATGCTGGTATTATATCCCGGTTAAATCC
**
68291285 CGCAGGCTTCGTGCTGGTATTATATCCCGGTTAAATCC
1 CGCAGGCTTTATGCTGGTATTATATCCCGGTTAAATCC
*
68291323 CGCAGGC-CTAGTGCTGGTATTATATC
1 CGCAGGCTTTA-TGCTGGTATTATATC
68291349 TGAGTTTAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
38 56 1.00
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.31
Consensus pattern (38 bp):
CGCAGGCTTTATGCTGGTATTATATCCCGGTTAAATCC
Found at i:68293220 original size:58 final size:57
Alignment explanation
Indices: 68293147--68293257 Score: 134
Period size: 57 Copynumber: 1.9 Consensus size: 57
68293137 CGAATGATTA
* *
68293147 GAGGCACTATGTGTGCAAATTCTTTTAA-CTAAGCACTATGTGTGCGAAATCGGTAATT
1 GAGGCACTATATGTGCAAATTC-TTCAATC-AAGCACTATGTGTGCGAAATCGGTAATT
* * * * *
68293205 GAGGCACTGTATGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTATATGTGCAAATTCTTCAATCAAGCACTATGTGTGCGAAATCGGT
68293258 CAGTGGGCAC
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
57 26 0.58
58 19 0.42
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (57 bp):
GAGGCACTATATGTGCAAATTCTTCAATCAAGCACTATGTGTGCGAAATCGGTAATT
Found at i:68293267 original size:28 final size:28
Alignment explanation
Indices: 68293179--68293275 Score: 81
Period size: 28 Copynumber: 3.4 Consensus size: 28
68293169 TTTTAACTAA
*
68293179 GCACTATGTGTGCGAAATCGGT-AATTGAG
1 GCACTATGTGTGCGAGATCGGTCAA-TG-G
* * * * *
68293208 GCACTGTATGTGCGAGTTC-TTCAATCGA
1 GCACTATGTGTGCGAGATCGGTCAAT-GG
*
68293236 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAATGG
*
68293264 GCACTAAGTGTG
1 GCACTATGTGTG
68293276 TGAAATGAGA
Statistics
Matches: 52, Mismatches: 13, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
28 30 0.58
29 22 0.42
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAATGG
Done.