Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 199 of 290
Found at i:68555843 original size:27 final size:27
Alignment explanation
Indices: 68555813--68555930 Score: 164
Period size: 27 Copynumber: 4.4 Consensus size: 27
68555803 GGGTATTTCA
* *
68555813 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * * *
68555840 GTAATTCTGTCAATTGAGGGTAAGACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
68555867 GTAATTCTATAAATCGAGGGTAAAAAG
1 GTAATTCTATAAATCGAGGGTAAAATG
68555894 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
68555921 GTAATTCTAT
1 GTAATTCTAT
68555931 CTTACAAGAG
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:68555953 original size:271 final size:267
Alignment explanation
Indices: 68555398--68556096 Score: 684
Period size: 271 Copynumber: 2.6 Consensus size: 267
68555388 ACAAATTAAG
* ** * * * **
68555398 GGTATTTCTGTAATTTTGTAAATCA-GGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGG
1 GGTATTTCAGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACAAA-CAGGGGTATTTTAG
* * * * * * **
68555462 TAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAA-CTAGGGGTGTTTTGGTAATTCTACC
65 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAATCGA-GGGTATTTTGGTAATTTTAAA
* *
68555526 CTATAGGGGTATTTCAGTAA-TTT-CACAATCGAAGGTAAAACGGTAATTTTGTAAATCAAGGGT
129 CTA-A-GGGTATTTCAGTAATTTTGTA-AATCGAAGGTAAAACGGTAATTCTGTAAATCAAGGGT
***
68555589 AAAACAGTAATTCTATAAATCGAGGGTAAAACAATAATTCTATAAAGCGAGGGTACTTTAGTAAT
191 AAAACAGTAATTCTATAAATCGAGGGTAAAACAATAATTCTATAAAGCGAGGGTAAAATAGTAAT
68555654 TTTTACAAGTCGAA
256 TTTTACAA--CGAA
* *
68555668 GGTATTTTAGTAATTTTACAAAGCAGGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAG
1 GGTATTTCAGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACAAA-CAGGGGTATTTTAG
**
68555733 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAA
65 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTGGTAA-TTT-TAA
* * * **
68555798 ACTAAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTCAATTGAGGGTAA
128 ACTAAGGGTATTTCAGTAATTTTGTAAATCGAAGGTAAAACGGTAATTCTGTAAATCAAGGGTAA
* * * * *
68555863 GACGGTAATTCTATAAATCGAGGGTAAAA-AGGTAATTCTATAAATCGAGGGTAAAATGGTAATT
193 AACAGTAATTCTATAAATCGAGGGTAAAACA-ATAATTCTATAAAGCGAGGGTAAAATAGTAA-T
68555927 CTATCTTACAA-G-A
256 -T-T-TTACAACGAA
* * * * *
68555940 -GTATTTCAGTAATTTTACAAAATC-GAGGGTATTTTAGTAATTTTGCAAACTGAAGGTA-TTTC
1 GGTATTTCAGTAATTTTAC-AAATCAGGGGGTATTTTAGTAATTTTACAAACAG-GGGTATTTTA
* * * * *
68556002 GATAATTTTACAAATC-GAGGATATTTGGGTAATTTTATAAATTG-GGGATACTTTGGTAATTTT
64 G-TAATTTTACAAACCAG-GGGTATTTTGGTAATTTTATAAATCGAGGG-TATTTTGGTAATTTT
* * *
68556065 ACAAGTCGAGGGTATTTCAGTAATTTGGTAAA
126 A-AACT-AAGGGTATTTCAGTAATTTTGTAAA
68556097 CTAAAGTATT
Statistics
Matches: 358, Mismatches: 53, Indels: 35
0.80 0.12 0.08
Matches are distributed among these distances:
269 2 0.01
270 36 0.10
271 206 0.58
272 98 0.27
273 8 0.02
274 1 0.00
275 1 0.00
276 6 0.02
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (267 bp):
GGTATTTCAGTAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACAAACAGGGGTATTTTAGT
AATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTAAACT
AAGGGTATTTCAGTAATTTTGTAAATCGAAGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAC
AGTAATTCTATAAATCGAGGGTAAAACAATAATTCTATAAAGCGAGGGTAAAATAGTAATTTTTA
CAACGAA
Found at i:68556026 original size:27 final size:28
Alignment explanation
Indices: 68555941--68556090 Score: 120
Period size: 27 Copynumber: 5.5 Consensus size: 28
68555931 CTTACAAGAG
*
68555941 TATTTC-AGTAATTTTACAAAATCGAGGG
1 TATTTCGAGTAATTTTAC-AAATCGAGGA
* *
68555969 TATTT-TAGTAATTTTGCAAA-CTGAAGG-
1 TATTTCGAGTAATTTTACAAATC-G-AGGA
68555996 TATTTCGA-TAATTTTACAAATCGAGGA
1 TATTTCGAGTAATTTTACAAATCGAGGA
* * * *
68556023 TATTT-GGGTAATTTTATAAATTGGGGA
1 TATTTCGAGTAATTTTACAAATCGAGGA
* *
68556050 TACTTT-G-GTAATTTTACAAGTCGAGGG
1 TA-TTTCGAGTAATTTTACAAATCGAGGA
68556077 TATTTC-AGTAATTT
1 TATTTCGAGTAATTT
68556091 GGTAAACTAA
Statistics
Matches: 100, Mismatches: 12, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
26 8 0.08
27 68 0.68
28 24 0.24
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (28 bp):
TATTTCGAGTAATTTTACAAATCGAGGA
Found at i:68558314 original size:30 final size:29
Alignment explanation
Indices: 68558280--68558349 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
68558270 AAGCCCACAC
* *
68558280 ATTTCATTTTTTTCACATTTTAGTCCCTCA
1 ATTTCATTTTTTTCACAATTTAATCCCT-A
**
68558310 ATTTC-TCCTTTTCACAATTTAATCCCTA
1 ATTTCATTTTTTTCACAATTTAATCCCTA
*
68558338 ATATGCATTTTT
1 AT-TTCATTTTT
68558350 ACTCAAAATC
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
28 3 0.10
29 20 0.65
30 8 0.26
ACGTcount: A:0.23, C:0.23, G:0.03, T:0.51
Consensus pattern (29 bp):
ATTTCATTTTTTTCACAATTTAATCCCTA
Found at i:68562786 original size:47 final size:47
Alignment explanation
Indices: 68562724--68562976 Score: 371
Period size: 47 Copynumber: 5.4 Consensus size: 47
68562714 GATGTACAAG
* *
68562724 GTGTATATATCTGATAAGGCCGAATGGCCAATGTGATGAATGTGACA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
68562771 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
68562818 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
68562865 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
68562912 GTGTATATATGTGATAAGGCCGAATGGCCAACGAGATGGATATGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
68562959 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
68562977 TCTCGAAGGG
Statistics
Matches: 187, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 187 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:68562807 original size:22 final size:22
Alignment explanation
Indices: 68562735--68562854 Score: 68
Period size: 22 Copynumber: 5.2 Consensus size: 22
68562725 TGTATATATC
68562735 TGATAAGGCCGAATGGCCAATG
1 TGATAAGGCCGAATGGCCAATG
* * *
68562757 TGATGAATGTGAC-AGTGTG-TATATG
1 TGAT-AA-G-GCCGAATG-GCCA-ATG
68562782 TGATAAGGCCGAATGGCCAATG
1 TGATAAGGCCGAATGGCCAATG
* * *
68562804 TGATGAATG-TGAAAGTGTG-TATATG
1 TGAT-AAGGCCG-AA-TG-GCCA-ATG
68562829 TGATAAGGCCGAATGGCCAATG
1 TGATAAGGCCGAATGGCCAATG
68562851 TGAT
1 TGAT
68562855 GAATGTGAAA
Statistics
Matches: 72, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 23 0.32
23 15 0.21
24 15 0.21
25 19 0.26
ACGTcount: A:0.31, C:0.11, G:0.32, T:0.27
Consensus pattern (22 bp):
TGATAAGGCCGAATGGCCAATG
Found at i:68566906 original size:47 final size:47
Alignment explanation
Indices: 68566837--68566940 Score: 190
Period size: 47 Copynumber: 2.2 Consensus size: 47
68566827 NNNNNNNNNN
*
68566837 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
*
68566884 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
68566931 ATGTGATGAA
1 ATGTGATGAA
68566941 CGTGGAAGTG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.36, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
Found at i:68566973 original size:47 final size:47
Alignment explanation
Indices: 68566837--68566980 Score: 166
Period size: 47 Copynumber: 3.1 Consensus size: 47
68566827 NNNNNNNNNN
* *
68566837 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAACGTGAACATGCATATATGTGAGAAGGCCGAATGGCCA
* * **
68566884 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCA
1 ATGTGATGAACGTGAACATGCATATATGTGAGAAGGCCGAATGGCCA
* * * *
68566931 ATGTGATGAACGTGGAA-GTGTATATATGTGGCGAA-GCCGAATGGCTA
1 ATGTGATGAACGT-GAACATGCATATATGT-GAGAAGGCCGAATGGCCA
68566978 ATG
1 ATG
68566981 CGAAACGTGT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
47 79 0.93
48 6 0.07
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAACGTGAACATGCATATATGTGAGAAGGCCGAATGGCCA
Found at i:68568570 original size:40 final size:40
Alignment explanation
Indices: 68568522--68569562 Score: 1850
Period size: 40 Copynumber: 26.0 Consensus size: 40
68568512 GAGTTATATA
*
68568522 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * * * *
68568562 TATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68568602 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
68568642 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68568682 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68568722 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68568762 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * *
68568802 TATCCGGGCTAAGTCCCGAAGAGCACTCGTGCT-GATGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG-TGATG
*
68568842 TATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68568882 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68568922 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68568962 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68569002 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68569042 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68569082 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68569122 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68569162 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68569202 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68569242 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68569282 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68569322 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68569362 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * *
68569402 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
68569442 TATCCGGGCTAAGTCCCGAAGAGCATTCGGGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * *
68569482 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * * * **
68569522 CATCCGGGCTAAGTCCTGAAGGGAATTCGTGCCGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
68569562 T
1 T
68569563 GTAATCAGGC
Statistics
Matches: 959, Mismatches: 40, Indels: 4
0.96 0.04 0.00
Matches are distributed among these distances:
39 1 0.00
40 957 1.00
41 1 0.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
Found at i:68572151 original size:253 final size:251
Alignment explanation
Indices: 68571694--68572153 Score: 581
Period size: 253 Copynumber: 1.8 Consensus size: 251
68571684 GACTTGGAAA
*
68571694 TTTAAGAGCAAATTGTAATAATCTGCTTAGGGCAGCAGCAGTAGCGTGATTTTTGAAAATCACCA
1 TTTAAGAGCAAATTGTAATAATCTGCTTAGGGCAGCAGCAGTAGCGTGATTTTGGAAAATCACCA
*
68571759 TAAATTGTTGGAGTGGAATTAAAGACTGAATAAAATATGTAATCAAAGCTCAATGAGTCTAGTTT
66 TAAATTGTGGGAGTGGAATTAAAGACTGAATAAAATATGTAATCAAAGCTCAATGAGTCTAGTTT
* * ** * *
68571824 CTTATAAAATAAACAGTGCAAGCAAAGGAATTTCCTATAGAGAGATATTTAAAGTTGTGTGTGAC
131 CGTATAAAAGAAACAGTGCAAGCAAAGGAATTGACGATAGAGAGATATTTAAAGTTGTGTGAGAC
*
68571889 AGTGTCAGAATGAATCNGGCATATATGATATTATGTTTTAAATATGTGAATGAGAAC
196 AGAGTCAGAATGAATC-GGCATATATGATATTATGTTTTAAATATGTGAATGAGAAC
* *
68571946 TTTACAGAGTAAATTGT-ATAAATCTGC-TAGGGACAGCAGCAGTAGCGTG-TTTTGGAAAAATT
1 TTTA-AGAGCAAATTGTAAT-AATCTGCTTAGGG-CAGCAGCAGTAGCGTGATTTTGG-AAAATC
* * * * * * **
68572008 ACCATAAATTGTGGGAGTTGAGTTAAAGGCTGAATAAATTATGTAATTAAATCTTGAT-ACGTCT
62 ACCATAAATTGTGGGAGTGGAATTAAAGACTGAATAAAATATGTAATCAAAGCTCAATGA-GTCT
* ** * * *
68572072 AGTTTCGTATAAAAGAAATC-GTGTAAGCAAAGGGGTTGACGGTA-ATGAGATTTTTAAGGTTGT
126 AGTTTCGTATAAAAGAAA-CAGTGCAAGCAAAGGAATTGACGATAGA-GAGATATTTAAAGTTGT
68572135 GTGAGACAGAGTCAGAATG
189 GTGAGACAGAGTCAGAATG
68572154 GCTCCGAAAT
Statistics
Matches: 176, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
252 18 0.10
253 157 0.89
254 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (251 bp):
TTTAAGAGCAAATTGTAATAATCTGCTTAGGGCAGCAGCAGTAGCGTGATTTTGGAAAATCACCA
TAAATTGTGGGAGTGGAATTAAAGACTGAATAAAATATGTAATCAAAGCTCAATGAGTCTAGTTT
CGTATAAAAGAAACAGTGCAAGCAAAGGAATTGACGATAGAGAGATATTTAAAGTTGTGTGAGAC
AGAGTCAGAATGAATCGGCATATATGATATTATGTTTTAAATATGTGAATGAGAAC
Found at i:68572910 original size:22 final size:22
Alignment explanation
Indices: 68572885--68573007 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 22
68572875 ACATGCATAT
68572885 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ** *
68572907 ATGTGATGAATG-TGAACACGCATA
1 ATGTGAT-AAGGCCGAA-TGGC-CA
68572931 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * ** *
68572954 ATGTGATGAATG-TGAACACGCATA
1 ATGTGAT-AAGGCCGAA-TGGC-CA
68572978 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
68573001 ATGTGAT
1 ATGTGAT
68573008 GAATGTTAAC
Statistics
Matches: 71, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
22 27 0.38
23 12 0.17
24 12 0.17
25 20 0.28
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:68573054 original size:22 final size:22
Alignment explanation
Indices: 68572885--68573054 Score: 69
Period size: 22 Copynumber: 7.3 Consensus size: 22
68572875 ACATGCATAT
*
68572885 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
* ** *
68572907 ATGTGATGAATG-TGAACACGCATA
1 ATGTGAT-AAGGCTGAA-TGGC-CA
*
68572931 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
* ** *
68572954 ATGTGATGAATG-TGAACACGCATA
1 ATGTGAT-AAGGCTGAA-TGGC-CA
*
68572978 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
* * *
68573001 ATGTGATGAATGTTAACAT-G-CA
1 ATGTGAT-AAGGCTGA-ATGGCCA
68573023 TATAGCTGATAAGGCTGAATGGCCA
1 -AT-G-TGATAAGGCTGAATGGCCA
68573048 ATGTGAT
1 ATGTGAT
68573055 GAATATGAAC
Statistics
Matches: 104, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
22 33 0.32
23 22 0.21
24 23 0.22
25 26 0.25
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:68573195 original size:22 final size:22
Alignment explanation
Indices: 68573169--68573242 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
68573159 ATGCATATAC
68573169 GTGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
* * ** *
68573191 GTGATGAATG-TGAACACGCATATAT
1 GTGAT-AAGGCCGAA-TGGC-CA-AT
68573216 GTGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
68573238 GTGAT
1 GTGAT
68573243 GAATGTTAAC
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
22 15 0.41
23 6 0.16
24 6 0.16
25 10 0.27
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (22 bp):
GTGATAAGGCCGAATGGCCAAT
Found at i:68573383 original size:22 final size:22
Alignment explanation
Indices: 68573355--68573524 Score: 61
Period size: 22 Copynumber: 7.3 Consensus size: 22
68573345 ACATGCATAT
68573355 ATGTGATAAGGCCGATTGGCCA
1 ATGTGATAAGGCCGATTGGCCA
* *
68573377 ATGTGATGAATGG--GAACAT-GCATA
1 ATGTGAT-AA-GGCCG-A-TTGGC-CA
68573401 TATGTGATAAGGCCGATTGGCCA
1 -ATGTGATAAGGCCGATTGGCCA
* *
68573424 ATGTGATGAATGG--GAACAT-GCATA
1 ATGTGAT-AA-GGCCG-A-TTGGC-CA
68573448 TATGTGATAAGGCCGATTGGCCA
1 -ATGTGATAAGGCCGATTGGCCA
* *
68573471 ATGTGATGAATGG--GAACAT-GCATA
1 ATGTGAT-AA-GGCCG-A-TTGGC-CA
68573495 TATGTGATAAGGCCGATTGGCCA
1 -ATGTGATAAGGCCGATTGGCCA
68573518 ATGTGAT
1 ATGTGAT
68573525 GAATGGGAAC
Statistics
Matches: 109, Mismatches: 12, Indels: 54
0.62 0.07 0.31
Matches are distributed among these distances:
22 31 0.28
23 27 0.25
24 27 0.25
25 24 0.22
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGATTGGCCA
Found at i:68573919 original size:47 final size:47
Alignment explanation
Indices: 68572864--68573903 Score: 1699
Period size: 47 Copynumber: 22.1 Consensus size: 47
68572854 GATTTTATGA
68572864 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
68572911 GATGAATGTGAACACGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
68572958 GATGAATGTGAACACGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
68573005 GATGAATGTTAACATGCATATA-GCTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATG-TGATAAGGCCGAATGGCCAATGT
* * *
68573052 GATGAATATGAACATGCATATACGTGATAAGGCCGAATGACCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
68573099 GATGAATGTGAACATGCATATAGGTGATAAGGCCGAGTGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
68573146 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
68573193 GATGAATGTGAACACGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
68573240 GATGAATGTTAACATGCATATA-GCTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATG-TGATAAGGCCGAATGGCCAATGT
*
68573287 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
68573334 GATGAATGGGAACATGCATATATGTGATAAGGCCGATTGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
68573381 GATGAATGGGAACATGCATATATGTGATAAGGCCGATTGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
68573428 GATGAATGGGAACATGCATATATGTGATAAGGCCGATTGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
68573475 GATGAATGGGAACATGCATATATGTGATAAGGCCGATTGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
68573522 GATGAATGGGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
68573569 GATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATAT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
68573616 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
68573663 GATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATAT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
68573710 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * *
68573757 GATGAATGTGAACTTGCATATGTGTGATAAGGTCGAATCGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
68573804 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATTGG-CAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAA-TGGCCAATGT
** *
68573851 GATGAATGTGAACATGCATATATGTGATAAGGTAGATTGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
68573898 GATGAA
1 GATGAA
68573904 CGTGGAAGTG
Statistics
Matches: 936, Mismatches: 51, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
46 5 0.01
47 927 0.99
48 4 0.00
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:68574000 original size:46 final size:46
Alignment explanation
Indices: 68573927--68574053 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
68573917 ATAAGTGGCG
68573927 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
* * *
68573973 AAGTCGAATGGCTAATGCGAAACGTGTATGAGACGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
* * *
68574019 AAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
68574054 TGTATATATA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.35, C:0.09, G:0.32, T:0.24
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
Found at i:68576712 original size:18 final size:18
Alignment explanation
Indices: 68576689--68576729 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
68576679 TATATAACTT
68576689 TAGTATCAGAGAGAGTAA
1 TAGTATCAGAGAGAGTAA
68576707 TAGTATCAGAGAGAGTAA
1 TAGTATCAGAGAGAGTAA
*
68576725 AAGTA
1 TAGTA
68576730 CCAGTAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.46, C:0.05, G:0.27, T:0.22
Consensus pattern (18 bp):
TAGTATCAGAGAGAGTAA
Found at i:68591381 original size:40 final size:40
Alignment explanation
Indices: 68591351--68591560 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
68591341 GGACTAAGAT
* * * *
68591351 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
68591391 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
68591431 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
68591471 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
68591511 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
68591550 CCGAAGGCATT
1 CCGAAGGCATT
68591561 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 34 0.21
40 125 0.79
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:68591435 original size:80 final size:80
Alignment explanation
Indices: 68591298--68591560 Score: 316
Period size: 80 Copynumber: 3.3 Consensus size: 80
68591288 TTGAATGCTG
* * * * * **
68591298 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
68591361 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * *
68591378 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
68591443 GTGCGAGTTATTAAA
66 GTGCGAGTTACTAAA
* * * *
68591458 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
68591522 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
68591537 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68591561 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
79 36 0.23
80 117 0.74
81 6 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:68591512 original size:120 final size:120
Alignment explanation
Indices: 68591298--68591560 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
68591288 TTGAATGCTG
* * *
68591298 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
68591362 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * * **
68591418 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * *
68591481 TCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
68591537 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68591561 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
119 35 0.29
120 81 0.66
121 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:68591580 original size:79 final size:80
Alignment explanation
Indices: 68591351--68591595 Score: 253
Period size: 80 Copynumber: 3.1 Consensus size: 80
68591341 GGACTAAGAT
* * * * * ** * *
68591351 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCT
68591415 AAATCCGGGTTAAGTC
65 AAATCCGGGTTAAGTC
* * * ** ** *
68591431 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
68591496 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
68591511 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
68591575 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
68591589 CCGAAGG
1 CCGAAGG
68591596 TACGTGATTT
Statistics
Matches: 144, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
78 14 0.10
79 47 0.33
80 83 0.58
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:68594177 original size:46 final size:48
Alignment explanation
Indices: 68594097--68594217 Score: 126
Period size: 46 Copynumber: 2.6 Consensus size: 48
68594087 GTAGCTGATG
* * *
68594097 CATGTCCCAA-ACAT-GTCTTACACTGGC-TTACGTCTCGAGGCTGAAGC
1 CATGT-CCAAGACATGGTCTTACACTAGCACT-CGTCTCAAGGCTGAAGC
* * * *
68594144 C-TGTCCTAGACAT-GTCTTACAGTAGCACTCGTCTCAATGCTGATGC
1 CATGTCCAAGACATGGTCTTACACTAGCACTCGTCTCAAGGCTGAAGC
68594190 CATGTCCAAGACATGGTCTTACACTAGC
1 CATGTCCAAGACATGGTCTTACACTAGC
68594218 TCTGATAATG
Statistics
Matches: 61, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
45 3 0.05
46 33 0.54
47 13 0.21
48 12 0.20
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
CATGTCCAAGACATGGTCTTACACTAGCACTCGTCTCAAGGCTGAAGC
Found at i:68598550 original size:27 final size:26
Alignment explanation
Indices: 68598492--68598601 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 26
68598482 AAGCATCCTG
* * *
68598492 GTGGCTATGCCACAAATTATCTGATCTG
1 GTGGCTCTGCCAC--ATTATCTGTTCTA
68598520 GTGGCTCTGCCACATATATCTGTTCTA
1 GTGGCTCTGCCACAT-TATCTGTTCTA
*
68598547 GTGGCTCTGCCACGATTATCAGTATCTA
1 GTGGCTCTGCCAC-ATTATCTGT-TCTA
* *
68598575 GTGACTCTGTCACATTATCTGTTCTA
1 GTGGCTCTGCCACATTATCTGTTCTA
68598601 G
1 G
68598602 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 7 0.10
27 36 0.50
28 29 0.40
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGTTCTA
Found at i:68598583 original size:55 final size:54
Alignment explanation
Indices: 68598492--68598601 Score: 141
Period size: 55 Copynumber: 2.0 Consensus size: 54
68598482 AAGCATCCTG
* * *
68598492 GTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTA
1 GTGGCTATGCCACAAATTATCAGATCTAGTGACTCTGCCACAT-TATCTGTTCTA
* * *
68598547 GTGGCTCTGCCAC-GATTATCAGTATCTAGTGACTCTGTCACATTATCTGTTCTA
1 GTGGCTATGCCACAAATTATCAG-ATCTAGTGACTCTGCCACATTATCTGTTCTA
68598601 G
1 G
68598602 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
54 19 0.40
55 29 0.60
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (54 bp):
GTGGCTATGCCACAAATTATCAGATCTAGTGACTCTGCCACATTATCTGTTCTA
Found at i:68606361 original size:28 final size:27
Alignment explanation
Indices: 68606320--68606408 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
68606310 AGGAAGCGTC
*
68606320 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACAAA-TATCTGAT
* *
68606348 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * * *
68606375 CTAGTAGCTCTGCCACGACTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
68606403 CTGGTG
1 CTGGTG
68606409 ACTTTGTCAC
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
27 27 0.55
28 22 0.45
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:68606424 original size:27 final size:26
Alignment explanation
Indices: 68606320--68606432 Score: 93
Period size: 27 Copynumber: 4.2 Consensus size: 26
68606310 AGGAAGCGTC
* * *
68606320 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGACTCTGCCAC--ATTATCTGTT
*
68606348 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACAT-TATCTGTT
* *
68606375 CTAGT-AGCTCTGCCACGACTATCTGTAT
1 CTGGTGA-CTCTGCCAC-ATTATCTGT-T
* *
68606403 CTGGTGACTTTGTCACATTATCTGTT
1 CTGGTGACTCTGCCACATTATCTGTT
68606429 CTGG
1 CTGG
68606433 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
26 7 0.10
27 35 0.49
28 28 0.39
29 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGACTCTGCCACATTATCTGTT
Found at i:68609239 original size:52 final size:44
Alignment explanation
Indices: 68609129--68609229 Score: 168
Period size: 44 Copynumber: 2.3 Consensus size: 44
68609119 GAATGATGTG
68609129 ATTATTTCATTTTTACATACGAACTTACTAAGCTTTATAGCTTA
1 ATTATTTCATTTTTACATACGAACTTACTAAGCTTTATAGCTTA
*
68609173 ATTATTTCATTTTTACATACGAAGTTACTAAGCTTTATAGCTTA
1 ATTATTTCATTTTTACATACGAACTTACTAAGCTTTATAGCTTA
* *
68609217 TTTGTTT-ATTTTT
1 ATTATTTCATTTTT
68609230 CTATGTTTTA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 6 0.11
44 48 0.89
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.50
Consensus pattern (44 bp):
ATTATTTCATTTTTACATACGAACTTACTAAGCTTTATAGCTTA
Found at i:68610308 original size:17 final size:17
Alignment explanation
Indices: 68610263--68610310 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
68610253 TATAAGGGAT
68610263 AAATAGATTGAAT-T-TG
1 AAAT-GATTGAATGTATG
*
68610279 -AATGA-TGATTGTATG
1 AAATGATTGAATGTATG
68610294 AAATGATTGAATGTATG
1 AAATGATTGAATGTATG
68610311 TGAAAAGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
13 4 0.15
14 3 0.12
15 5 0.19
16 5 0.19
17 9 0.35
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.38
Consensus pattern (17 bp):
AAATGATTGAATGTATG
Found at i:68611986 original size:19 final size:19
Alignment explanation
Indices: 68611962--68612001 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
68611952 TGTGTCATCA
*
68611962 TAAATTCGTAGGCATAACT
1 TAAATTCATAGGCATAACT
*
68611981 TAAATTTATAGGCATAACT
1 TAAATTCATAGGCATAACT
68612000 TA
1 TA
68612002 CACATTTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGGCATAACT
Found at i:68615741 original size:49 final size:49
Alignment explanation
Indices: 68615674--68615912 Score: 289
Period size: 49 Copynumber: 4.8 Consensus size: 49
68615664 GTAGACAAGG
* *
68615674 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* * * * *
68615723 TTATCCAGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAA
1 TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
** * * * * **
68615773 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGATTGAA
1 TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA
* * *
68615823 GTTATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAA
1 -TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
68615873 TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
1 TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
68615913 CATGACCTCA
Statistics
Matches: 158, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 77 0.49
50 44 0.28
51 37 0.23
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:68616196 original size:27 final size:27
Alignment explanation
Indices: 68616166--68616219 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
68616156 TCGTACAACC
* *
68616166 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
68616193 CATGTAACAATAATTTGTCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
68616220 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:68622045 original size:27 final size:27
Alignment explanation
Indices: 68622015--68622068 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
68622005 TCATACAACC
* *
68622015 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
68622042 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
68622069 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:68630066 original size:20 final size:20
Alignment explanation
Indices: 68630016--68630067 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
68630006 ATATAGTCTC
* *
68630016 ACACGCCCATGTGGCTTGGG
1 ACACGCCCGTGTAGCTTGGG
*
68630036 ACACGCTCGTGTAGCTTGGG
1 ACACGCCCGTGTAGCTTGGG
*
68630056 ACACTCCCGTGT
1 ACACGCCCGTGT
68630068 CCTTAACTCG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.15, C:0.31, G:0.31, T:0.23
Consensus pattern (20 bp):
ACACGCCCGTGTAGCTTGGG
Found at i:68630220 original size:13 final size:13
Alignment explanation
Indices: 68630202--68630235 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
68630192 GTGCAGACTT
68630202 CACACGCCTTGCG
1 CACACGCCTTGCG
68630215 CACACGCCTTGCG
1 CACACGCCTTGCG
68630228 CACACGCC
1 CACACGCC
68630236 CATGTCCTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.18, C:0.50, G:0.21, T:0.12
Consensus pattern (13 bp):
CACACGCCTTGCG
Found at i:68631008 original size:46 final size:46
Alignment explanation
Indices: 68630943--68631122 Score: 252
Period size: 46 Copynumber: 3.9 Consensus size: 46
68630933 TTATCTTCGA
* * * ** * *
68630943 CATGATGCCATAGTCTCTTTCAAGAATGGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
*
68630989 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
* *
68631035 CATGCTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
* *
68631081 CATGTTGTCATGGTATCTTTCAACCATAGTCTTATTCATTTC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTC
68631123 TCATCATATT
Statistics
Matches: 119, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 119 1.00
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
Found at i:68631081 original size:92 final size:92
Alignment explanation
Indices: 68630943--68631167 Score: 283
Period size: 92 Copynumber: 2.4 Consensus size: 92
68630933 TTATCTTCGA
* * *
68630943 CATGATGCCATAGTCTCTTTCAAGAATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACAATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTT
*
68631008 TCAACCATGGTCTTATTCATTTCCTAT
66 TCAACCATAGTCTTATTCATTTCCTAT
* * * * * *
68631035 CATGCTGCCATGGTATCTTTCAACCATGGTCTTATTTATTTCCTGTCATGTTGTCATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACAATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTT
68631100 TCAACCATAGTCTTATTCATTT-CTCAT
66 TCAACCATAGTCTTATTCATTTCCT-AT
* * * * *
68631127 CAT-ATTTCTATAGTGTCTTTCAACTATGGTCTTACACATTT
1 CATGA-TGCCATAGTATCTTTCAACAATGGTCTTACTCATTT
68631168 GAATCGTGAT
Statistics
Matches: 112, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
91 2 0.02
92 110 0.98
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (92 bp):
CATGATGCCATAGTATCTTTCAACAATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTT
TCAACCATAGTCTTATTCATTTCCTAT
Found at i:68631146 original size:46 final size:45
Alignment explanation
Indices: 68630958--68631160 Score: 219
Period size: 46 Copynumber: 4.4 Consensus size: 45
68630948 TGCCATAGTC
** * * * *
68630958 TCTTTCAAGAATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCCTATCATGTT-TCATGGTA
**
68631004 TCTTTCAACCATGGTCTTATTCATTTCCTATCATGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCCTATCATG-TTTCATGGTA
* *
68631050 TCTTTCAACCATGGTCTTATTTATTTCCTGTCATGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCCTATCATGTT-TCATGGTA
* * * *
68631096 TCTTTCAACCATAGTCTTATTCATTT-CTCATCATATTTCTATAGTG
1 TCTTTCAACCATGGTCTTATTCATTTCCT-ATCATGTTTC-ATGGTA
*
68631142 TCTTTCAACTATGGTCTTA
1 TCTTTCAACCATGGTCTTA
68631161 CACATTTGAA
Statistics
Matches: 135, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
45 5 0.04
46 129 0.96
47 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.13, T:0.45
Consensus pattern (45 bp):
TCTTTCAACCATGGTCTTATTCATTTCCTATCATGTTTCATGGTA
Found at i:68631199 original size:45 final size:45
Alignment explanation
Indices: 68631142--68631257 Score: 178
Period size: 45 Copynumber: 2.6 Consensus size: 45
68631132 TTCTATAGTG
*
68631142 TCTTTCAACTATGGTCTTACACATTTGAATCGTGATGCCATAGCA
1 TCTTTCAACTATGGTCTTACTCATTTGAATCGTGATGCCATAGCA
* * * *
68631187 TCTTTCAGCTATGGTCTTACTCGTTTGAATTGTGATGCCATAGCG
1 TCTTTCAACTATGGTCTTACTCATTTGAATCGTGATGCCATAGCA
*
68631232 TCTTTCAATTATGGTCTTACTCATTT
1 TCTTTCAACTATGGTCTTACTCATTT
68631258 ATGGTATGAT
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.41
Consensus pattern (45 bp):
TCTTTCAACTATGGTCTTACTCATTTGAATCGTGATGCCATAGCA
Found at i:68631268 original size:45 final size:44
Alignment explanation
Indices: 68631136--68631274 Score: 149
Period size: 45 Copynumber: 3.1 Consensus size: 44
68631126 TCATATTTCT
* *
68631136 ATAGTGTCTTTCAACTATGGTCTTACACATTTGAATCG-TGATGCC
1 ATAGCGTCTTTCAACTATGGTCTTACTCATTT-AAT-GTTGATGCC
* * *
68631181 ATAGCATCTTTCAGCTATGGTCTTACTCGTTTGAAT-TGTGATGCC
1 ATAGCGTCTTTCAACTATGGTCTTACTCATTT-AATGT-TGATGCC
*
68631226 ATAGCGTCTTTCAATTATGGTCTTACTCATTT-ATGGTATGATGCC
1 ATAGCGTCTTTCAACTATGGTCTTACTCATTTAAT-GT-TGATGCC
68631271 ATAG
1 ATAG
68631275 TCCAACTAAG
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
43 2 0.03
45 78 0.98
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.40
Consensus pattern (44 bp):
ATAGCGTCTTTCAACTATGGTCTTACTCATTTAATGTTGATGCC
Found at i:68631321 original size:33 final size:33
Alignment explanation
Indices: 68631284--68631422 Score: 104
Period size: 33 Copynumber: 4.2 Consensus size: 33
68631274 GTCCAACTAA
* *
68631284 GGTCTTACACGTGTATTGCCATGGCCCAGCCAT
1 GGTCTTACACATGTATTGCCATAGCCCAGCCAT
* ** * * **
68631317 GGTCTTGCAC-TCGTGGTGCCATATCCTAGATAT
1 GGTCTTACACAT-GTATTGCCATAGCCCAGCCAT
* *
68631350 GGTCTTATCATCATG-A-TGCCATAGCCTAGCTAT
1 GGTCTTA-CA-CATGTATTGCCATAGCCCAGCCAT
* * *
68631383 GGTCTTACACATATATTGCCATGGCCCAACCAT
1 GGTCTTACACATGTATTGCCATAGCCCAGCCAT
68631416 GGTCTTA
1 GGTCTTA
68631423 TCCGTCAATT
Statistics
Matches: 83, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
31 3 0.04
32 4 0.05
33 71 0.86
34 2 0.02
35 2 0.02
36 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.31
Consensus pattern (33 bp):
GGTCTTACACATGTATTGCCATAGCCCAGCCAT
Found at i:68633229 original size:30 final size:29
Alignment explanation
Indices: 68633193--68633264 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
68633183 CATCCTTAAA
**
68633193 ATATTTACTCTATTAGTCCTTCAAATTTTC
1 ATATTTACTCT-TTAACCCTTCAAATTTTC
* * *
68633223 ATATTTACACTTTAACCCTTCAAGTTTTG
1 ATATTTACTCTTTAACCCTTCAAATTTTC
68633252 AGTATTTACTCTT
1 A-TATTTACTCTT
68633265 GTGCACCAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 15 0.43
30 20 0.57
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.49
Consensus pattern (29 bp):
ATATTTACTCTTTAACCCTTCAAATTTTC
Found at i:68635173 original size:27 final size:27
Alignment explanation
Indices: 68635143--68635320 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68635133 ATATTGAGTC
* * * *
68635143 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
68635170 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68635197 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
68635225 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
68635252 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
68635279 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68635306 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68635321 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:68635282 original size:82 final size:81
Alignment explanation
Indices: 68635164--68635319 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68635154 TGCTATATAA
* *
68635164 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
68635229 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
68635246 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
68635310 CACTTAGTGC
65 CACTTAGTGC
68635320 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:68643237 original size:27 final size:27
Alignment explanation
Indices: 68643207--68643384 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68643197 ATATTGAGTC
* * * *
68643207 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
68643234 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68643261 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
68643289 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
68643316 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
68643343 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
68643370 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68643385 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:68643346 original size:82 final size:81
Alignment explanation
Indices: 68643228--68643383 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68643218 TGCTATATAA
* *
68643228 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
68643293 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
68643310 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
68643374 CACTTAGTGC
65 CACTTAGTGC
68643384 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:68646101 original size:42 final size:41
Alignment explanation
Indices: 68646052--68646163 Score: 118
Period size: 43 Copynumber: 2.7 Consensus size: 41
68646042 AGAATCATAC
*
68646052 CAATGCCATATCCCAGATATGGTCTTACATTGGA-TCTCACAT
1 CAATGCCATATCCCAGATATGGTCTTACA--CGATTCTCACAT
** * *
68646094 TGATGCCAATAGCCCAGCTATGGTCTTACACGATTCTCACAT
1 CAATGCC-ATATCCCAGATATGGTCTTACACGATTCTCACAT
* * *
68646136 CAATGCCATGTTCCAGACATGGTCTTAC
1 CAATGCCATATCCCAGATATGGTCTTAC
68646164 TCGAAATCTC
Statistics
Matches: 56, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
41 18 0.32
42 18 0.32
43 20 0.36
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (41 bp):
CAATGCCATATCCCAGATATGGTCTTACACGATTCTCACAT
Found at i:68648987 original size:40 final size:41
Alignment explanation
Indices: 68648906--68649127 Score: 235
Period size: 40 Copynumber: 5.6 Consensus size: 41
68648896 AATGATGTCT
* * *
68648906 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATATCC
* *
68648946 GGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTAAT-TCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATATCC
* *
68648986 GGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAA-ATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCC
* * *
68649025 GGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCC
* *
68649065 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCC
* * *
68649105 AGGTTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
68649128 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 18, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
39 34 0.22
40 113 0.72
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (41 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCC
Found at i:68649141 original size:40 final size:38
Alignment explanation
Indices: 68648910--68649160 Score: 179
Period size: 40 Copynumber: 6.3 Consensus size: 38
68648900 ATGTCTGGGC
* * * *
68648910 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAACCGG-T
* * *
68648950 TAAGAT-CCGAAGGCATTTGTGCAAGTTACTA-ATTCCGGGC
1 TAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-ACC-GGT
* *
68648990 TAAG-CCTGAAGGCATTGGTGCGAGTTACTA-AATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA-CC-GGT
* *
68649029 TAAGTCCCGAAGGCATTTGTGTGAGTTACTATAACCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAG-TACTATAACC-GGT
68649069 TAAGTCCCGAAGGCATTTGTGCGAGTCACTATAACCAGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAACC-GGT
* ** *
68649109 TATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAACCGGT
* *
68649148 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
68649161 TACGTGATTT
Statistics
Matches: 180, Mismatches: 20, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
39 48 0.27
40 119 0.66
41 13 0.07
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (38 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCGGT
Found at i:68649149 original size:119 final size:119
Alignment explanation
Indices: 68648910--68649160 Score: 260
Period size: 119 Copynumber: 2.1 Consensus size: 119
68648900 ATGTCTGGGC
*
68648910 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCAAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGTGCAAG
* * * * **
68648975 TTACTAATTCCGGGCTAAGCCTGAAGGCATTGGTGCGAGTTACTAAATCCGGGT
66 TCACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGGGT
* * * * *
68649029 TAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTGTGCA
* * * *
68649092 AGTCACT-ATAACCAGGTTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGT
64 AGTCACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAATCCGGGT
* *
68649148 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
68649161 TACGTGATTT
Statistics
Matches: 109, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
118 3 0.03
119 77 0.71
120 29 0.27
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGTGCAAG
TCACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGGGT
Found at i:68651072 original size:55 final size:55
Alignment explanation
Indices: 68650988--68651095 Score: 207
Period size: 55 Copynumber: 2.0 Consensus size: 55
68650978 TGGATAAATA
68650988 ATTTGATGTAGTTACAAGTGTTACTTACCTAAAAAACCATAATCTTGAGAGTATC
1 ATTTGATGTAGTTACAAGTGTTACTTACCTAAAAAACCATAATCTTGAGAGTATC
*
68651043 ATTTGATGTAGTTACAAGTGTTACTTACCTAAATAACCATAATCTTGAGAGTA
1 ATTTGATGTAGTTACAAGTGTTACTTACCTAAAAAACCATAATCTTGAGAGTA
68651096 AAGCCAAAGC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (55 bp):
ATTTGATGTAGTTACAAGTGTTACTTACCTAAAAAACCATAATCTTGAGAGTATC
Found at i:68667723 original size:40 final size:40
Alignment explanation
Indices: 68667674--68667935 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
68667664 GCTCCTCGTT
* *
68667674 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
68667714 CAAACGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
68667754 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
68667793 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
68667832 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
68667871 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
68667912 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68667936 CATCATTCAA
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 126 0.63
40 62 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:68676092 original size:39 final size:40
Alignment explanation
Indices: 68675895--68676236 Score: 443
Period size: 40 Copynumber: 8.7 Consensus size: 40
68675885 GCTCCTCGTT
* *
68675895 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
68675935 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * *
68675975 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * *
68676015 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
68676055 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
68676094 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
68676133 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
68676172 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
68676213 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68676237 CATCATTCAA
Statistics
Matches: 285, Mismatches: 9, Indels: 17
0.92 0.03 0.05
Matches are distributed among these distances:
38 2 0.01
39 128 0.45
40 144 0.51
41 11 0.04
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:68678026 original size:38 final size:38
Alignment explanation
Indices: 68677893--68678034 Score: 153
Period size: 38 Copynumber: 3.7 Consensus size: 38
68677883 GGCTTAAAGA
* * * *
68677893 CCCGCAGGCTATA-TGCTGGAAATATATCCAGGTTAAAT
1 CCCGCAGGCT-TAGTACTGGTATTATATCCGGGTTAAAT
** * *
68677931 CTTGCAGGCTTCGTACTGGTACTATATCCGGGTTAAAT
1 CCCGCAGGCTTAGTACTGGTATTATATCCGGGTTAAAT
* *
68677969 CTCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTAGTACTGGTATTATATCCGGGTTAAAT
*
68678007 CCCGCAGGAC-TAGTGCTGGTATTATATC
1 CCCGCAGG-CTTAGTACTGGTATTATATC
68678035 TAAGCTTAAA
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
37 1 0.01
38 88 0.98
39 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (38 bp):
CCCGCAGGCTTAGTACTGGTATTATATCCGGGTTAAAT
Found at i:68690487 original size:27 final size:26
Alignment explanation
Indices: 68690454--68690631 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 26
68690444 TAAATTGTAC
68690454 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * * *
68690481 TGTACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
68690507 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
68690535 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* * *
68690563 AGCACTAAGTGTTCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
68690590 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
68690617 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68690632 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 99 0.80
28 24 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:68690572 original size:82 final size:81
Alignment explanation
Indices: 68690455--68690610 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
68690445 AAATTGTACA
* * * *
68690455 GCACTAAGTGTGCGATTCGACTATGTTGTACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68690519 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
68690536 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTTCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68690601 TGCGAGTTGA
65 TGCGAATTGA
68690611 TTATATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 46 0.72
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68690622 original size:82 final size:81
Alignment explanation
Indices: 68690451--68690631 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
68690441 GATTAAATTG
* * * *
68690451 TACAGCACTAAGTGTGCGATTCGACTATGTTGTACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68690516 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
68690532 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTTCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68690596 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68690614 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68690632 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 20 0.25
82 61 0.75
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68690642 original size:27 final size:27
Alignment explanation
Indices: 68690536--68690642 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
68690526 TGACCATGCG
* * *
68690536 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
* ** * * **
68690564 GCACTAAGTGTTCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
68690591 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
68690618 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
68690643 CATTCGTGAA
Statistics
Matches: 65, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
27 51 0.78
28 14 0.22
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:68692158 original size:328 final size:328
Alignment explanation
Indices: 68691555--68692210 Score: 1231
Period size: 328 Copynumber: 2.0 Consensus size: 328
68691545 CTCCGACTTT
68691555 GGAAATTCAATATAAATTAACCAGAGATAATTAGGGGTCGTACCATATATGTACAGATTCCTCTC
1 GGAAATTCAATATAAATTAACCAGAGATAATTAGGGGTCGTACCATATATGTACAGATTCCTCTC
*
68691620 TGAGTCTAGTTTTCATAGAAACAAACGGCATCAGTATTGAAGCCCCGTGCAGGGAGATATCCAGG
66 TGAGTCTAGTTTTCATAGAAACAAACGGCATCAGTATTGAAGCCCCGTGCAGGGAGATATCCAAG
68691685 TCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACATGGGAGACTTTGACTAATAAACTGT
131 TCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACATGGGAGACTTTGACTAATAAACTGT
* * * *
68691750 ACTAATTGGCCCGACCAAAAATTCTAGAAAACAATACATGGATGGGCACATGAGTCTAGTTTCTG
196 ACTAATTGACCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTTTCTG
68691815 GGAAAAATCACGAAACTGATTTTCGAGTTACGAAACTCAAGATATGATTTTTAAAACGACTAGTA
261 GGAAAAATCACGAAACTGATTTTCGAGTTACGAAACTCAAGATATGATTTTTAAAACGACTAGTA
68691880 CAC
326 CAC
*
68691883 GGAAATTCATTATAAATTAACCAGAGATAATTAGGGGTCGTACCATATATGTACAGATTCCTCTC
1 GGAAATTCAATATAAATTAACCAGAGATAATTAGGGGTCGTACCATATATGTACAGATTCCTCTC
68691948 TGAGTCTAGTTTTCATAGAAACAAACGGCATCAGTATTGAAGCCCCGTGCAGGGAGATATCCAAG
66 TGAGTCTAGTTTTCATAGAAACAAACGGCATCAGTATTGAAGCCCCGTGCAGGGAGATATCCAAG
*
68692013 TCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGAGACTTTGACTAATAAACTGT
131 TCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACATGGGAGACTTTGACTAATAAACTGT
*
68692078 ACTAATTGACCCAACCAAAAATTCTAGAAAAAAATACATAGATGGTCACATGAGTCTAGTTTCTG
196 ACTAATTGACCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTTTCTG
*
68692143 GGAAAAATTACGAAACTGATTTTCGAGTTACGAAACTCAAGATATGATTTTTAAAACGACTAGTA
261 GGAAAAATCACGAAACTGATTTTCGAGTTACGAAACTCAAGATATGATTTTTAAAACGACTAGTA
68692208 CAC
326 CAC
68692211 AGATTGGGCA
Statistics
Matches: 319, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
328 319 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (328 bp):
GGAAATTCAATATAAATTAACCAGAGATAATTAGGGGTCGTACCATATATGTACAGATTCCTCTC
TGAGTCTAGTTTTCATAGAAACAAACGGCATCAGTATTGAAGCCCCGTGCAGGGAGATATCCAAG
TCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACATGGGAGACTTTGACTAATAAACTGT
ACTAATTGACCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTTTCTG
GGAAAAATCACGAAACTGATTTTCGAGTTACGAAACTCAAGATATGATTTTTAAAACGACTAGTA
CAC
Found at i:68694696 original size:12 final size:12
Alignment explanation
Indices: 68694679--68694704 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68694669 AAAATAGGGC
68694679 TTTAGCGGCGTT
1 TTTAGCGGCGTT
68694691 TTTAGCGGCGTT
1 TTTAGCGGCGTT
68694703 TT
1 TT
68694705 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:68694774 original size:41 final size:41
Alignment explanation
Indices: 68694729--68694895 Score: 151
Period size: 41 Copynumber: 4.1 Consensus size: 41
68694719 CAAAATTTTT
* *
68694729 AAAATACAGAGCAATAGTGGCG-TTTTAAAAAAATGCCGCTA
1 AAAATA-AGAGCAATAGCGGCGCTTTTAAAAAAACGCCGCTA
* * *
68694770 AAAATAA-AGCAACAACGGCGTTTTAGTAAAAAAACGCCGCTA
1 AAAATAAGAGCAATAGCGGCGCTTT--TAAAAAAACGCCGCTA
* ***
68694812 AAAAT-AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
1 AAAATAAGAGCAATAGCGGCGCTTTTAAAAAAACGCCGCTA
** * * **
68694852 AAAACCAGAGCATTAGCGGCACTTTTAGTAAAACGCCGCTA
1 AAAATAAGAGCAATAGCGGCGCTTTTAAAAAAACGCCGCTA
68694893 AAA
1 AAA
68694896 GTCATATAAC
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
39 10 0.09
40 21 0.20
41 43 0.40
42 33 0.31
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (41 bp):
AAAATAAGAGCAATAGCGGCGCTTTTAAAAAAACGCCGCTA
Found at i:68694810 original size:42 final size:43
Alignment explanation
Indices: 68694754--68694855 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 43
68694744 AGTGGCGTTT
*
68694754 TAAAAAAATGCCGCTAAAAATAAAGCAACAACGGCG-TTTTAG
1 TAAAAAAACGCCGCTAAAAATAAAGCAACAACGGCGCTTTTAG
* ** * *
68694796 TAAAAAAACGCCGCTAAAAATAGAGCATTAGCGGCGCTTTTGG
1 TAAAAAAACGCCGCTAAAAATAAAGCAACAACGGCGCTTTTAG
68694839 T---AAAACGCCGCTAAAAA
1 TAAAAAAACGCCGCTAAAAA
68694856 CCAGAGCATT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
40 16 0.30
42 31 0.58
43 6 0.11
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (43 bp):
TAAAAAAACGCCGCTAAAAATAAAGCAACAACGGCGCTTTTAG
Found at i:68695075 original size:14 final size:14
Alignment explanation
Indices: 68695053--68695097 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
68695043 TTAATTATCA
*
68695053 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
68695067 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
68695081 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
68695095 TTA
1 TTA
68695098 AGCAGGTTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:68695958 original size:15 final size:15
Alignment explanation
Indices: 68695938--68695979 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
68695928 TTTAATTTAG
*
68695938 AAGATAAATGTATAT
1 AAGATAAATATATAT
68695953 AAGATAAATATATAT
1 AAGATAAATATATAT
*
68695968 AA-ATATATATAT
1 AAGATAAATATAT
68695980 GAAAAGTGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:68699328 original size:22 final size:20
Alignment explanation
Indices: 68699286--68699325 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
68699276 GGTGATTCCA
*
68699286 TTTTGGTTTTTTAGATGTTC
1 TTTTGGTTTTTTACATGTTC
*
68699306 TTTTGGTCTTTTTTCATGTT
1 TTTTGGT-TTTTTACATGTT
68699326 TCTATCCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.07, C:0.07, G:0.17, T:0.68
Consensus pattern (20 bp):
TTTTGGTTTTTTACATGTTC
Found at i:68700870 original size:10 final size:10
Alignment explanation
Indices: 68700857--68700890 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
68700847 TTATTATTTG
68700857 AAGTATGAAT
1 AAGTATGAAT
68700867 AAGTATGAAT
1 AAGTATGAAT
68700877 AAGTATGAAT
1 AAGTATGAAT
68700887 AAGT
1 AAGT
68700891 TTTTATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (10 bp):
AAGTATGAAT
Found at i:68707133 original size:21 final size:21
Alignment explanation
Indices: 68707109--68707156 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
68707099 TCAACTTAGA
* *
68707109 GCGGAGACAGCAGGGCGAGAG
1 GCGGAGACAGCAGCGAGAGAG
* *
68707130 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGACAGCAGCGAGAGAG
68707151 GCGGAG
1 GCGGAG
68707157 CAAAACATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.56, T:0.00
Consensus pattern (21 bp):
GCGGAGACAGCAGCGAGAGAG
Found at i:68707530 original size:42 final size:43
Alignment explanation
Indices: 68707450--68707741 Score: 396
Period size: 42 Copynumber: 6.7 Consensus size: 43
68707440 ATTACGAAAA
* *
68707450 TTAGCGGCGTTTTTATAAAACAAGCGCCGCTAAAAGTCCTGTTCT
1 TTAGCGGCGTTTTTCT-AAA-AAGCGCCGCTAAAAGTCCTGGTCT
* *
68707495 TTAGCGGTGTTTTTCT-AAAAGCGCCGCTAAAAGTCCTTGTCT
1 TTAGCGGCGTTTTTCTAAAAAGCGCCGCTAAAAGTCCTGGTCT
*
68707537 TTAGCGGCGTTTTTCT-AAAGGCGCCGCTAAAAGTCCTGGTCT
1 TTAGCGGCGTTTTTCTAAAAAGCGCCGCTAAAAGTCCTGGTCT
68707579 TTAGCGGCGTTTTT-TAAAGAAAGCGCCGCTAAAAGTCCTGGTCT
1 TTAGCGGCGTTTTTCT-AA-AAAGCGCCGCTAAAAGTCCTGGTCT
* *
68707623 TTAGCGGCGTTTGTTTTAAAAAGACGCTGCTAAAAGTCCTGGTCT
1 TTAGCGGCGTTT-TTCTAAAAAG-CGCCGCTAAAAGTCCTGGTCT
* * *
68707668 TCAACGGCGTTTTTCT-AAAAGCGCCGCTAAAAGTCCTCGTCT
1 TTAGCGGCGTTTTTCTAAAAAGCGCCGCTAAAAGTCCTGGTCT
68707710 TTAGCGGCGTTTTT-TAAAAAAGCGCCGCTAAA
1 TTAGCGGCGTTTTTCT-AAAAAGCGCCGCTAAA
68707742 GACGAGGACT
Statistics
Matches: 223, Mismatches: 16, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
41 2 0.01
42 106 0.48
43 23 0.10
44 43 0.19
45 48 0.22
46 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (43 bp):
TTAGCGGCGTTTTTCTAAAAAGCGCCGCTAAAAGTCCTGGTCT
Found at i:68707684 original size:131 final size:127
Alignment explanation
Indices: 68707450--68707741 Score: 449
Period size: 131 Copynumber: 2.3 Consensus size: 127
68707440 ATTACGAAAA
* *
68707450 TTAGCGGCGTTTTTATAAAACAAGCGCCGCTAAAAGTCCTGTTCTTTAGCGGTGTTTTTCTAAAA
1 TTAGCGGCGTTTTT-TAAAA-AAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTTTTCTAAAA
* * * * *
68707515 GCGCCGCTAAAAGTCCTTGTCTTTAGCGGCGTTTTTCTAAAGGCGCCGCTAAAAGTCCTGGTCT
64 GCGCCGCTAAAAGTCCTGGTCTTCAACGGCGTTTTTCTAAAAGCGCCGCTAAAAGTCCTCGTCT
*
68707579 TTAGCGGCGTTTTTTAAAGAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTTGTTTTAAAA
1 TTAGCGGCGTTTTTTAAA-AAAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTT-TTCT-AAA
*
68707644 AGACGCTGCTAAAAGTCCTGGTCTTCAACGGCGTTTTTCTAAAAGCGCCGCTAAAAGTCCTCGTC
63 AG-CGCCGCTAAAAGTCCTGGTCTTCAACGGCGTTTTTCTAAAAGCGCCGCTAAAAGTCCTCGTC
68707709 T
127 T
68707710 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAA
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAA
68707742 GACGAGGACT
Statistics
Matches: 150, Mismatches: 9, Indels: 7
0.90 0.05 0.04
Matches are distributed among these distances:
128 38 0.25
129 18 0.12
130 19 0.13
131 75 0.50
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (127 bp):
TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTCCTGGTCTTTAGCGGCGTTTTTCTAAAAGC
GCCGCTAAAAGTCCTGGTCTTCAACGGCGTTTTTCTAAAAGCGCCGCTAAAAGTCCTCGTCT
Found at i:68708522 original size:18 final size:18
Alignment explanation
Indices: 68708499--68708533 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
68708489 ACCCTCGTGG
68708499 TAACGAGTTCAACCATTA
1 TAACGAGTTCAACCATTA
68708517 TAACGAGTTCAACCATT
1 TAACGAGTTCAACCATT
68708534 GTTTAGCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (18 bp):
TAACGAGTTCAACCATTA
Found at i:68723332 original size:16 final size:16
Alignment explanation
Indices: 68723313--68723343 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68723303 CTTCTTCACT
68723313 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
68723329 TACTTACTTACTTAA
1 TACTCACTTACTTAA
68723344 TAAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:68723349 original size:20 final size:20
Alignment explanation
Indices: 68723310--68723349 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
68723300 AAACTTCTTC
* *
68723310 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATAAAAT
*
68723330 ACTTACTTACTTAATAAAAT
1 ACTTACTCACTTAATAAAAT
68723350 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATAAAAT
Found at i:68723661 original size:53 final size:54
Alignment explanation
Indices: 68723534--68723788 Score: 220
Period size: 55 Copynumber: 4.8 Consensus size: 54
68723524 ACACGGGTAC
* * * * * *
68723534 CTTACCATTGCCATGACTTGTCATGGTCTCACGTGGTATCC-T---TT-TGACA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
68723583 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
68723636 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * *
68723691 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
68723744 CCTTTCCAATTTCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
68723789 AAACCCTAAT
Statistics
Matches: 167, Mismatches: 28, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
49 36 0.22
50 1 0.01
52 2 0.01
53 48 0.29
54 9 0.05
55 69 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:68723724 original size:55 final size:53
Alignment explanation
Indices: 68723573--68723725 Score: 200
Period size: 53 Copynumber: 2.8 Consensus size: 53
68723563 CACGTGGTAT
* * *
68723573 CCTTTTGACACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTG
1 CCTTATGA-ACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCCTTG
* * *
68723627 CCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTG
1 CCTTATGAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCC-TTG
*
68723680 CCTTATAGTAACTTATCAATGCCATGTCTTGACATGGTCTTACATG
1 CCTTAT-G-AACTTACCAATGCCATGTCTTGACATGGTCTTACATG
68723726 ATTTCCTTAC
Statistics
Matches: 86, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
52 2 0.02
53 43 0.50
54 8 0.09
55 33 0.38
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
CCTTATGAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCCTTG
Found at i:68723725 original size:108 final size:110
Alignment explanation
Indices: 68723582--68723778 Score: 283
Period size: 108 Copynumber: 1.8 Consensus size: 110
68723572 TCCTTTTGAC
* * *
68723582 ACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA-
1 ACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTACCTTA-GAAACCTCACCAAT
68723644 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTA
65 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTA
* ** **
68723690 ACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTAGAAACCTTTCCAATT
1 ACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTACCTTAGAAACCTCACCAATT
*
68723755 TCCATGCCTTGGCATGGTCTTACA
66 GCCATGCCTTGGCATGGTCTTACA
68723779 CGGTATCCTT
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 46 0.60
109 6 0.08
110 24 0.31
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (110 bp):
ACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTACCTTAGAAACCTCACCAATT
GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTA
Found at i:68731729 original size:31 final size:31
Alignment explanation
Indices: 68731686--68731769 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
68731676 TTAGTCTTGA
68731686 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
68731716 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
68731747 CATTTCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
68731770 ACTGTAAACG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
30 5 0.10
31 47 0.90
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:68731840 original size:42 final size:42
Alignment explanation
Indices: 68731793--68731884 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
68731783 TGGCCCATAG
* *** *
68731793 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAAAACCAATGAATGTATGCAA
*
68731835 GCCCATTTCAATATCATATGAAAAACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAAAACCAATGAATGTATGCAA
68731877 GCCCATTT
1 GCCCATTT
68731885 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAAAACCAATGAATGTATGCAA
Found at i:68732101 original size:26 final size:26
Alignment explanation
Indices: 68732017--68732152 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
68732007 CTGGAGGCCT
68732017 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
68732041 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
68732066 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
68732092 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
68732118 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
68732144 AGCCTTTTT
1 AGCCCTTTT
68732153 GCACTTCCTC
Statistics
Matches: 100, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 33 0.33
26 57 0.57
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:68732141 original size:52 final size:51
Alignment explanation
Indices: 68732017--68732152 Score: 224
Period size: 52 Copynumber: 2.7 Consensus size: 51
68732007 CTGGAGGCCT
68732017 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
68732066 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-A
*
68732118 AGCCCTTTTCAATAAACTGGGGCATAAGCCTTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
68732153 GCACTTCCTC
Statistics
Matches: 82, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 10 0.12
51 25 0.30
52 35 0.43
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (51 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
Found at i:68732227 original size:20 final size:20
Alignment explanation
Indices: 68732202--68732288 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
68732192 TTATGAATAC
68732202 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
68732222 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
68732242 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
68732262 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
68732282 ATCATGT
1 ATCATGT
68732289 ATATCATATC
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:68733025 original size:27 final size:27
Alignment explanation
Indices: 68732995--68733059 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
68732985 GGGCATATTC
68732995 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
68733022 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
* *
68733049 ATCTTTTTACC
1 GTCATTTTACC
68733060 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:68733216 original size:27 final size:27
Alignment explanation
Indices: 68733203--68733354 Score: 200
Period size: 27 Copynumber: 5.6 Consensus size: 27
68733193 TGTAAATTAA
*
68733203 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
68733229 AGGGTACTTCGGTAATTTTACAAACTAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
68733257 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
68733284 GGGTGTTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* **
68733311 GGGTATTTTGGTAATTCTATCCTAC-AG
1 GGGTATTTTGGTAATTTTA-CAAACTAG
*
68733338 GGGTATTTTAGTAATTT
1 GGGTATTTTGGTAATTT
68733355 CAAAATCGAG
Statistics
Matches: 111, Mismatches: 12, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
27 106 0.95
28 5 0.05
ACGTcount: A:0.27, C:0.09, G:0.23, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:68733477 original size:81 final size:81
Alignment explanation
Indices: 68733347--68733555 Score: 255
Period size: 81 Copynumber: 2.6 Consensus size: 81
68733337 GGGGTATTTT
* * * * *
68733347 AGTAATTTCA-AAATCGAGGGTAAAAC-GGTAATTTTGTAAA-CTGAAGGTAAAATGGTAATTTT
1 AGTAATTCCATAAATCGAGGGT-AAACTGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTT
68733409 GTAAATT-GAGGATAAAAC
64 GT-AATTCGAGGATAAAAC
* **
68733427 GGTAATTCTGTAAATCGAGGGTAAACTGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGT
1 AGTAATTCCATAAATCGAGGGTAAACTGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGT
* *
68733492 AATTCGAGGGTGAAAC
66 AATTCGAGGATAAAAC
* *
68733508 AGTAATTCCATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AGTAATTCCATAAATCGAGGGTAAACTGGTAATTCTATAAATCGAGGG
68733556 CATTTTAGTA
Statistics
Matches: 110, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
80 14 0.13
81 95 0.86
82 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (81 bp):
AGTAATTCCATAAATCGAGGGTAAACTGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGT
AATTCGAGGATAAAAC
Found at i:68733542 original size:27 final size:27
Alignment explanation
Indices: 68733357--68733555 Score: 213
Period size: 27 Copynumber: 7.4 Consensus size: 27
68733347 AGTAATTTCA
* *
68733357 AAATCGAGGGTAAAACGGTAATTTTGT
1 AAATCGAGGGTAAAACGGTAATTCTAT
* * * *
68733384 AAA-CTGAAGGTAAAATGGTAATTTTGT
1 AAATC-GAGGGTAAAACGGTAATTCTAT
* * *
68733411 AAATTGAGGATAAAACGGTAATTCTGT
1 AAATCGAGGGTAAAACGGTAATTCTAT
68733438 AAATCGAGGGT-AAACTGGTAATTCTAT
1 AAATCGAGGGTAAAAC-GGTAATTCTAT
* *
68733465 AAATCGAGGGTAAAACGGTAATTTTGT
1 AAATCGAGGGTAAAACGGTAATTCTAT
* * * *
68733492 AATTCGAGGGTGAAACAGTAATTCCAT
1 AAATCGAGGGTAAAACGGTAATTCTAT
* *
68733519 AAATCGAGGGTAAAATGGTAATTCTAC
1 AAATCGAGGGTAAAACGGTAATTCTAT
68733546 AAATCGAGGG
1 AAATCGAGGG
68733556 CATTTTAGTA
Statistics
Matches: 144, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
26 5 0.03
27 135 0.94
28 4 0.03
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
AAATCGAGGGTAAAACGGTAATTCTAT
Found at i:68737618 original size:17 final size:17
Alignment explanation
Indices: 68737596--68737631 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
68737586 CATAACTCCA
68737596 ATTCAAAGAGTTCATTC
1 ATTCAAAGAGTTCATTC
68737613 ATTCAAAGAGTTCATTC
1 ATTCAAAGAGTTCATTC
68737630 AT
1 AT
68737632 CGTTCAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (17 bp):
ATTCAAAGAGTTCATTC
Found at i:68740969 original size:40 final size:39
Alignment explanation
Indices: 68740877--68741023 Score: 170
Period size: 41 Copynumber: 3.6 Consensus size: 39
68740867 AAGGGTACCA
68740877 AAGTACAAACAGGGACACATATGTGCAATTCAGGGGGTGATG
1 AAGTACAAACAGGG-CACATATGTGCAATTCA-GGGGT-ATG
* *
68740919 AAGTACAAACAAGGGCA-TTATGTGCAATTCATGGGTACTG
1 AAGTACAAAC-AGGGCACATATGTGCAATTCAGGGGTA-TG
*
68740959 AAGTACAAACAGTGGCACAGATGTGCAATTCAGGGGTATCG
1 AAGTACAAACAG-GGCACATATGTGCAATTCAGGGGTAT-G
* *
68741000 AAGTACGAACAAGGGCACGTATGT
1 AAGTACAAAC-AGGGCACATATGT
68741024 ATAGTTCAAC
Statistics
Matches: 91, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
39 3 0.03
40 21 0.23
41 49 0.54
42 14 0.15
43 4 0.04
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (39 bp):
AAGTACAAACAGGGCACATATGTGCAATTCAGGGGTATG
Found at i:68740983 original size:82 final size:80
Alignment explanation
Indices: 68740859--68741016 Score: 221
Period size: 82 Copynumber: 1.9 Consensus size: 80
68740849 GGGTACAAAA
*
68740859 GTGCATTCAAGGGTACCAAAGTACAAACAGGGACACATATGTGCAATTCAGGGGGTGAT-GAAGT
1 GTGCATTCAAGGGTACCAAAGTACAAACAGGGACACAGATGTGCAATTCA-GGGGT-ATCGAAGT
68740923 ACAAACAAGGGCATTAT
64 ACAAACAAGGGCATTAT
* **
68740940 GTGCAATTCATGGGTACTGAAGTACAAACAGTGG-CACAGATGTGCAATTCAGGGGTATCGAAGT
1 GTGC-ATTCAAGGGTACCAAAGTACAAACAG-GGACACAGATGTGCAATTCAGGGGTATCGAAGT
*
68741004 ACGAACAAGGGCA
64 ACAAACAAGGGCA
68741017 CGTATGTATA
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
80 2 0.03
81 26 0.38
82 39 0.57
83 2 0.03
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.20
Consensus pattern (80 bp):
GTGCATTCAAGGGTACCAAAGTACAAACAGGGACACAGATGTGCAATTCAGGGGTATCGAAGTAC
AAACAAGGGCATTAT
Found at i:68742442 original size:46 final size:48
Alignment explanation
Indices: 68742349--68742451 Score: 120
Period size: 46 Copynumber: 2.2 Consensus size: 48
68742339 TACATGAATT
* *
68742349 ATTCCTGTCTCCAATGCCATATATATATAATATGGGCTTACACGGCTC
1 ATTCCTGTCTCCAAAGCCATATATATATAATATGGACTTACACGGCTC
* * * * *
68742397 ATTCCTGTCTCTAAAGCCATATA-A-CTGATATGGACTTATATGGCTC
1 ATTCCTGTCTCCAAAGCCATATATATATAATATGGACTTACACGGCTC
*
68742443 ATTTCTGTC
1 ATTCCTGTC
68742452 CTGTCCTGTC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
46 25 0.53
47 1 0.02
48 21 0.45
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (48 bp):
ATTCCTGTCTCCAAAGCCATATATATATAATATGGACTTACACGGCTC
Found at i:68758232 original size:46 final size:47
Alignment explanation
Indices: 68758177--68758296 Score: 154
Period size: 46 Copynumber: 2.6 Consensus size: 47
68758167 GTAACCAATG
* * *
68758177 ATGTCCCAGACATGTCTTACACTGGCT-TATATCTCGAGGCCGATG-C
1 ATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAAGGCCGATGTC
* *
68758223 ATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGTC
1 ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATGTC
*
68758270 ATGTCCCAAACATGGTCTTACACTAGC
1 ATGTCCCAGACAT-GTCTTACACTAGC
68758297 ACACAAATAA
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 38 0.58
47 14 0.22
48 13 0.20
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCGATGTC
Found at i:68759771 original size:68 final size:68
Alignment explanation
Indices: 68759662--68759796 Score: 261
Period size: 68 Copynumber: 2.0 Consensus size: 68
68759652 AAGTGGCCCT
68759662 TTAATATATGTGGGAAAGTGTTTGTCCTTGCATGTCAAATTAGCCAAATTAAAGCATAGTGGCTG
1 TTAATATATGTGGGAAAGTGTTTGTCCTTGCATGTCAAATTAGCCAAATTAAAGCATAGTGGCTG
68759727 GCA
66 GCA
*
68759730 TTAATATATGTGGGAAAGTGTTTGTCCTTGCATGTCAAATTAGCTAAATTAAAGCATAGTGGCTG
1 TTAATATATGTGGGAAAGTGTTTGTCCTTGCATGTCAAATTAGCCAAATTAAAGCATAGTGGCTG
68759795 GC
66 GC
68759797 CATGCTATGG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (68 bp):
TTAATATATGTGGGAAAGTGTTTGTCCTTGCATGTCAAATTAGCCAAATTAAAGCATAGTGGCTG
GCA
Found at i:68761141 original size:27 final size:27
Alignment explanation
Indices: 68761110--68761287 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68761100 TAAATTGTAC
68761110 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68761137 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68761163 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68761191 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68761219 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68761246 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68761273 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68761288 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68761224 original size:82 final size:81
Alignment explanation
Indices: 68761111--68761266 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68761101 AAATTGTACA
* *
68761111 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68761175 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68761192 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68761257 TGCGAGTTGA
65 TGCGAATTGA
68761267 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68761278 original size:82 final size:81
Alignment explanation
Indices: 68761107--68761287 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
68761097 GATTAAATTG
* *
68761107 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68761172 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68761188 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68761252 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68761270 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68761288 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68762220 original size:67 final size:67
Alignment explanation
Indices: 68762112--68762247 Score: 254
Period size: 67 Copynumber: 2.0 Consensus size: 67
68762102 TGTTTTCATG
*
68762112 AGGAAGTAACGAAAAGATCATATGGGCAGTATATTAAGAGATAATCAGATTTTTGTGCTACAGGG
1 AGGAAGTAACGAAAAGATCATATGGGCAGTATATTAAGAGATAATCAGATTTTTGTGCGACAGGG
68762177 CC
66 CC
*
68762179 AGGAAGTAACGAAAAGATCATATGGGCAGTATATTAAGAGATAATCAGATTTTTGTGGGACAGGG
1 AGGAAGTAACGAAAAGATCATATGGGCAGTATATTAAGAGATAATCAGATTTTTGTGCGACAGGG
68762244 CC
66 CC
68762246 AG
1 AG
68762248 AACGGTTTCT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.38, C:0.11, G:0.27, T:0.24
Consensus pattern (67 bp):
AGGAAGTAACGAAAAGATCATATGGGCAGTATATTAAGAGATAATCAGATTTTTGTGCGACAGGG
CC
Found at i:68762514 original size:72 final size:72
Alignment explanation
Indices: 68762397--68762540 Score: 270
Period size: 72 Copynumber: 2.0 Consensus size: 72
68762387 CCGTGCAGGG
*
68762397 AGATATCCAGGTCGTAATGGGCAAAGGTCATTGTAGTCGACCCCTGCAAAATGGGAGACTTTGAC
1 AGATATCCAGGTCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAAAATGGGAGACTTTGAC
68762462 TAATAAA
66 TAATAAA
*
68762469 AGATATCCAGGTCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACATGGGAGACTTTGAC
1 AGATATCCAGGTCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAAAATGGGAGACTTTGAC
68762534 TAATAAA
66 TAATAAA
68762541 CTGTACTAAT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.23
Consensus pattern (72 bp):
AGATATCCAGGTCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAAAATGGGAGACTTTGAC
TAATAAA
Found at i:68768430 original size:27 final size:27
Alignment explanation
Indices: 68768399--68768576 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
68768389 TAAATTGTAC
68768399 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
68768426 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68768452 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
68768480 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
68768508 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
68768535 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
68768562 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68768577 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:68768513 original size:82 final size:81
Alignment explanation
Indices: 68768400--68768555 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
68768390 AAATTGTACA
* *
68768400 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68768464 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68768481 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68768546 TGCGAGTTGA
65 TGCGAATTGA
68768556 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68768567 original size:82 final size:81
Alignment explanation
Indices: 68768396--68768576 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
68768386 GATTAAATTG
* *
68768396 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68768461 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68768477 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68768541 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68768559 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68768577 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68772839 original size:42 final size:42
Alignment explanation
Indices: 68772792--68772876 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
68772782 GAGGATGAAT
* *
68772792 ACTTAGCGTTGTTAGAAGCTAATCAAAAGGGATTTAATCCGC
1 ACTTAGCGTTGTTAGAAGCTAAACAAAAGAGATTTAATCCGC
68772834 ACTTAGCGTTGTTAGAAGCTAAACAAAAGAGATTTAATCCGC
1 ACTTAGCGTTGTTAGAAGCTAAACAAAAGAGATTTAATCCGC
68772876 A
1 A
68772877 ATCCCGTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.27
Consensus pattern (42 bp):
ACTTAGCGTTGTTAGAAGCTAAACAAAAGAGATTTAATCCGC
Found at i:68776246 original size:22 final size:19
Alignment explanation
Indices: 68776213--68776259 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
68776203 AAAGATGATA
68776213 ATTATTAATATATAATTATATCT
1 ATTA-TAATATAT-ATTA-AT-T
68776236 ATTATAATATATATTAATT
1 ATTATAATATATATTAATT
68776255 ATTAT
1 ATTAT
68776260 CAACTTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 4 0.17
22 8 0.33
23 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTATAATATATATTAATT
Found at i:68776255 original size:16 final size:15
Alignment explanation
Indices: 68776215--68776256 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
68776205 AGATGATAAT
68776215 TATTAATATATAATTA
1 TATTAAT-TATAATTA
68776231 TATCT-ATTATAATATA
1 TAT-TAATTATAAT-TA
68776247 TATTAATTAT
1 TATTAATTAT
68776257 TATCAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 15 0.65
17 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:68776858 original size:25 final size:26
Alignment explanation
Indices: 68776830--68776886 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
68776820 TTCTCCTAAA
* * *
68776830 TTTTAATTTTATTTAATTATT-TAAT
1 TTTTAAGTTTATTGAATCATTATAAT
*
68776855 TTTTTAGTTTATTGAATCATTAATAAT
1 TTTTAAGTTTATTGAATCATT-ATAAT
68776882 TTTTA
1 TTTTA
68776887 TTTAATTAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 17 0.68
27 8 0.32
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.63
Consensus pattern (26 bp):
TTTTAAGTTTATTGAATCATTATAAT
Found at i:68794297 original size:16 final size:16
Alignment explanation
Indices: 68794276--68794317 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
68794266 ATGTATCGGC
68794276 AAAAGTCGAAATGCCG
1 AAAAGTCGAAATGCCG
* *
68794292 AAAAGTAGAAATGTCG
1 AAAAGTCGAAATGCCG
*
68794308 AAAAGCCGAA
1 AAAAGTCGAA
68794318 GGTTTGGCTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.24, T:0.12
Consensus pattern (16 bp):
AAAAGTCGAAATGCCG
Found at i:68794588 original size:29 final size:29
Alignment explanation
Indices: 68794529--68794643 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
68794519 GTGAGCATGA
* ***
68794529 ATATGAATGTGA-CTGGGCCTAGCAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
68794557 ATATGAATGTGATTTGGTCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
68794586 ATATAAAGGTCATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* **
68794615 ATATGAATATGA-TTGGGATTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
68794643 A
1 A
68794644 GAAACAGGTA
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
28 27 0.38
29 44 0.62
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:68795721 original size:17 final size:18
Alignment explanation
Indices: 68795689--68795722 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68795679 TTTAAGAAGG
68795689 GTTTTCAATGAAAACACA
1 GTTTTCAATGAAAACACA
*
68795707 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
68795723 TTCAATGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (18 bp):
GTTTTCAATGAAAACACA
Found at i:68798283 original size:58 final size:59
Alignment explanation
Indices: 68798172--68798291 Score: 170
Period size: 58 Copynumber: 2.1 Consensus size: 59
68798162 CGGAATGGAA
* * *
68798172 ATGGGAAAGAGTTACCATGGACTTTGTAACGAGATTTCTTTTATCACAAAAAAA-AAAG
1 ATGGGAAAGAGTTACCATGGACTTTATAACGAGATTACCTTTATCACAAAAAAAGAAAG
* * **
68798230 ATGGGAAAGAGTTACCATGGACTTTATAACGGGATTACCTTTATCCCCGAAAAAGAAAG
1 ATGGGAAAGAGTTACCATGGACTTTATAACGAGATTACCTTTATCACAAAAAAAGAAAG
68798289 ATG
1 ATG
68798292 CGATTGAGGT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 47 0.87
59 7 0.13
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (59 bp):
ATGGGAAAGAGTTACCATGGACTTTATAACGAGATTACCTTTATCACAAAAAAAGAAAG
Found at i:68804856 original size:28 final size:28
Alignment explanation
Indices: 68804816--68804879 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
68804806 TAGGAAGTAG
*
68804816 TTGGGCCTGATGGGCCATATGAACGAGA
1 TTGGGCCTGATGGGCCATATAAACGAGA
*
68804844 TTGGGCCTGATGGGCCATGTAAACGAGA
1 TTGGGCCTGATGGGCCATATAAACGAGA
68804872 TTGGGCCT
1 TTGGGCCT
68804880 AAAGGGGCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.22, C:0.19, G:0.36, T:0.23
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATAAACGAGA
Found at i:68806447 original size:39 final size:40
Alignment explanation
Indices: 68806402--68806573 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
68806392 GCTCCTCGTT
* * *
68806402 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
68806442 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
68806481 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
68806521 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
68806561 CAAATGCCTTCGG
1 CAAATGCCTTCGG
68806574 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:68806502 original size:40 final size:39
Alignment explanation
Indices: 68806404--68806626 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
68806394 TCCTCGTTCA
* * * *
68806404 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
68806443 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
68806482 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
68806522 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
68806562 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
68806603 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
68806627 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:68806586 original size:80 final size:79
Alignment explanation
Indices: 68806402--68806626 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
68806392 GCTCCTCGTT
* * * * *
68806402 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
68806466 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
68806481 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
68806546 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
68806561 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
68806625 GA
63 GA
68806627 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:68806635 original size:41 final size:41
Alignment explanation
Indices: 68806558--68806635 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
68806548 TTTGTATCTC
* * *
68806558 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
68806599 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
68806636 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:68808382 original size:27 final size:27
Alignment explanation
Indices: 68808351--68808430 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
68808341 GATAAATTAT
*
68808351 AGAAATACCCTTGTAGTGTAAAATTAC
1 AGAAATACCCTTGTAGTGTAAAATGAC
*
68808378 CGAAATACCCTTGTAGTGTAAAATGAC
1 AGAAATACCCTTGTAGTGTAAAATGAC
* * *
68808405 AGACATACCCCTATAGTGTAAAATGA
1 AGAAATACCCTTGTAGTGTAAAATGA
68808431 TTGTTTTGCC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.26
Consensus pattern (27 bp):
AGAAATACCCTTGTAGTGTAAAATGAC
Found at i:68815861 original size:68 final size:68
Alignment explanation
Indices: 68815783--68815919 Score: 256
Period size: 68 Copynumber: 2.0 Consensus size: 68
68815773 TATGAAGATT
*
68815783 ATGTTAATAATAAGCATTAGAGATAAGTAAAATAGAAGTGAAAGGAGTAAACAAACGCTAAGGGA
1 ATGTTAATAATAAGCATTAGAGATAAGTAAAATAGAAGTGAAAGGAGTAAACAAACGCTAAAGGA
68815848 AAG
66 AAG
*
68815851 ATGTTAATAATAAGCATTAGAGATAAGTAAAATAGAAGTGAAAGGAGTAAACAAATGCTAAAGGA
1 ATGTTAATAATAAGCATTAGAGATAAGTAAAATAGAAGTGAAAGGAGTAAACAAACGCTAAAGGA
68815916 AAG
66 AAG
68815919 A
1 A
68815920 GATTGAGCGT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.53, C:0.05, G:0.23, T:0.20
Consensus pattern (68 bp):
ATGTTAATAATAAGCATTAGAGATAAGTAAAATAGAAGTGAAAGGAGTAAACAAACGCTAAAGGA
AAG
Found at i:68822410 original size:30 final size:30
Alignment explanation
Indices: 68822374--68822435 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
68822364 AATCAGAAGT
68822374 TTTGGCACTAAGTGTACGATTTAAACTAGC
1 TTTGGCACTAAGTGTACGATTTAAACTAGC
*
68822404 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTACGATTTAAACTAGC
68822434 TT
1 TT
68822436 CGACTACTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35
Consensus pattern (30 bp):
TTTGGCACTAAGTGTACGATTTAAACTAGC
Found at i:68829561 original size:30 final size:30
Alignment explanation
Indices: 68829527--68829588 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
68829517 AATTGGAAGT
68829527 TTTGGCACTAAGTGTACAATTTAAACTAGC
1 TTTGGCACTAAGTGTACAATTTAAACTAGC
* * *
68829557 TTTGGCACTAAGTGTGCGATTTAAGCTAGC
1 TTTGGCACTAAGTGTACAATTTAAACTAGC
68829587 TT
1 TT
68829589 CGGCTACTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35
Consensus pattern (30 bp):
TTTGGCACTAAGTGTACAATTTAAACTAGC
Found at i:68834087 original size:40 final size:40
Alignment explanation
Indices: 68834009--68834192 Score: 214
Period size: 40 Copynumber: 4.5 Consensus size: 40
68833999 ACCCAAGTAT
* *
68834009 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
* **
68834048 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
* *
68834088 CTTCGGGACTTAGCTCGGATATAGTC-ACTAGCACAAATGT
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
*
68834128 CTTCGGGACTTAGCCCGCG-TATAGCAACTACTCTCACAAATGC
1 CTTCGGGACTTAGCCCG-GATATAGCAACTA---GCACAAATGC
68834171 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
68834193 CATCCGAATA
Statistics
Matches: 124, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 12 0.10
40 81 0.65
41 2 0.02
42 1 0.01
43 28 0.23
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:68836520 original size:40 final size:40
Alignment explanation
Indices: 68836474--68836660 Score: 213
Period size: 39 Copynumber: 4.7 Consensus size: 40
68836464 ACTACTTGCT
68836474 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAGTAACTCGCA
* *
68836514 CAAATGCCTTCGAGACTTAGCCCGGTTCA-A-TAACTGGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-ATAGTAACTCGCA
* * *
68836553 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * * *
68836593 CAATTGCCTTCAGG-TTTAGCCCGG-AATTAGTTACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
68836632 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
68836661 CATCCGAATA
Statistics
Matches: 122, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 63 0.52
40 54 0.44
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:68836577 original size:79 final size:78
Alignment explanation
Indices: 68836474--68836660 Score: 243
Period size: 79 Copynumber: 2.4 Consensus size: 78
68836464 ACTACTTGCT
*
68836474 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAATAACTCGCACAAATGCCTTC-AGACTTAGCCCG
*
68836538 G-TTCAATAACTGGCA
64 GATT-AATAACTAGCA
* * * **
68836553 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTGCCTTCAGGTTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCAGACTTAGCCCGG-
* *
68836618 ATTAGTTACTAGCA
65 ATTAATAACTAGCA
68836632 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
68836661 CATCCGAATA
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
78 11 0.12
79 80 0.85
80 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATGCCTTCAGACTTAGCCCGGA
TTAATAACTAGCA
Found at i:68840328 original size:43 final size:43
Alignment explanation
Indices: 68840280--68840449 Score: 123
Period size: 43 Copynumber: 4.0 Consensus size: 43
68840270 TTTATCGAGA
68840280 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
* * * * * *
68840323 TGTGATTACGTGTAAGACCATGTTTGGTACATCGGCATCGTTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATTG-TAT
** * * * * * * **
68840367 T-CAATTTCGTGTAAGACCCTGTCTAGGACAGTGGCA-TCAAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
* *
68840408 ATGTGATAACATGTAAGACCATATCT-CGA-ATATGGCATTGTA
1 -TGTGATTACATGTAAGACCATATCTGGGACAT-TGGCATTGTA
68840450 CGAGCTATTG
Statistics
Matches: 93, Mismatches: 29, Indels: 10
0.70 0.22 0.08
Matches are distributed among these distances:
41 3 0.03
42 8 0.09
43 78 0.84
44 4 0.04
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
Found at i:68860547 original size:23 final size:23
Alignment explanation
Indices: 68860493--68860588 Score: 165
Period size: 23 Copynumber: 4.1 Consensus size: 23
68860483 CCTAGCCTCT
*
68860493 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
68860516 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
68860540 TTTAATAACTGGGGCATAAACCC
1 TTTAATAACTGGGGCATAAGCCC
68860563 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
68860586 TTT
1 TTT
68860589 TGCACTTCCT
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
23 47 0.68
24 22 0.32
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:68860682 original size:20 final size:20
Alignment explanation
Indices: 68860637--68860683 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
68860627 TTTTGAATAC
68860637 ACCATGTGCATATCATACAT
1 ACCATGTGCATATCATACAT
**
68860657 GTCATGTGCATATCATACAT
1 ACCATGTGCATATCATACAT
68860677 ACCATGT
1 ACCATGT
68860684 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (20 bp):
ACCATGTGCATATCATACAT
Done.