Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 200 of 290
Found at i:68865106 original size:23 final size:23
Alignment explanation
Indices: 68865052--68865170 Score: 202
Period size: 23 Copynumber: 5.1 Consensus size: 23
68865042 CCTAGCCTTT
* *
68865052 TTTAATAATTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
68865075 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
68865099 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
68865122 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
68865145 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
68865168 TTT
1 TTT
68865171 TGCACTTCCT
Statistics
Matches: 91, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
23 70 0.77
24 21 0.23
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:68865246 original size:20 final size:20
Alignment explanation
Indices: 68865221--68865285 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
68865211 ATGAATACAC
68865221 CATGTGCATATCATACATAT
1 CATGTGCATATCATACATAT
*
68865241 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAT
*
68865261 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAT
68865281 CATGT
1 CATGT
68865286 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (20 bp):
CATGTGCATATCATACATAT
Found at i:68865252 original size:11 final size:11
Alignment explanation
Indices: 68865221--68865274 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
68865211 ATGAATACAC
68865221 CATGTGCATAT
1 CATGTGCATAT
*
68865232 CA--TACATAT
1 CATGTGCATAT
68865241 CATGTGCATAT
1 CATGTGCATAT
* *
68865252 CA--TACATGT
1 CATGTGCATAT
68865261 CATGTGCATAT
1 CATGTGCATAT
68865272 CAT
1 CAT
68865275 ACATACCATG
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (11 bp):
CATGTGCATAT
Found at i:68865361 original size:25 final size:25
Alignment explanation
Indices: 68865322--68865369 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
68865312 ATATTTAAAC
* *
68865322 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
68865347 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
68865370 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:68867799 original size:19 final size:18
Alignment explanation
Indices: 68867762--68867805 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
68867752 ATACTTACAG
68867762 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
68867779 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
68867798 TACTAATT
1 TAATAATT
68867806 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:68872306 original size:27 final size:27
Alignment explanation
Indices: 68872275--68872329 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
68872265 ACTCTAAGAG
68872275 TACAAGTCTATAATCAAGAATGAACAT
1 TACAAGTCTATAATCAAGAATGAACAT
68872302 TACAAGTCTATAATCAAGAATGAACAT
1 TACAAGTCTATAATCAAGAATGAACAT
68872329 T
1 T
68872330 CTTGTGAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.27
Consensus pattern (27 bp):
TACAAGTCTATAATCAAGAATGAACAT
Found at i:68877763 original size:40 final size:40
Alignment explanation
Indices: 68877708--68878895 Score: 2295
Period size: 40 Copynumber: 29.7 Consensus size: 40
68877698 GAGCATTGGA
* *
68877708 ATATATCCGGGCTAAGACCAGAAGGCAATTATACGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68877748 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68877788 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
68877828 ATATATCCGGGCTAAGACCTGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
68877868 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68877908 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68877948 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68877988 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878028 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878068 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878108 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878148 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878188 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878228 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878268 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878308 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878348 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878388 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878428 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878468 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878508 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878548 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878588 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878628 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878668 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878708 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
68878748 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
68878788 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
68878828 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
68878868 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
68878896 ATGTGTTTGC
Statistics
Matches: 1135, Mismatches: 13, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 1135 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:68882767 original size:34 final size:34
Alignment explanation
Indices: 68882724--68882789 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
68882714 TCCTTCCCTT
*
68882724 CCTTTTAATATCTCCCATTATACACATCAATTTG
1 CCTTTTAATATCTCCCATCATACACATCAATTTG
* *
68882758 CCTTTTAATATCTCCCATCGTACTCATCAATT
1 CCTTTTAATATCTCCCATCATACACATCAATT
68882790 GGCTCATCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.27, C:0.29, G:0.03, T:0.41
Consensus pattern (34 bp):
CCTTTTAATATCTCCCATCATACACATCAATTTG
Found at i:68886561 original size:81 final size:81
Alignment explanation
Indices: 68886474--68886673 Score: 224
Period size: 81 Copynumber: 2.5 Consensus size: 81
68886464 GGGAAATTCT
* * * *
68886474 CCAAAAGAGTATCAGTAAGGAATTCGCCAATGTTTCAGTGAACTAGGGGTTCGCAT-GTACTTCG
1 CCAAAAGAGTATCAGTAAAGAATTCGCCAGTGTTTCAATGAACTAAGGGTTCG-ATAGTACTTCG
68886538 ACGAACTAGG-GAGTTCA
65 ACGAA-TAGGAGAGTTCA
* * * * * * * * *
68886555 CTAAAAGAGTATTAGTAATGAGTTTGCTAGTGTTTCAATGAACTAAGGGTTTGTTAGTACTTCGG
1 CCAAAAGAGTATCAGTAAAGAATTCGCCAGTGTTTCAATGAACTAAGGGTTCGATAGTACTTCGA
*
68886620 CGAATTGGAGAGTTCA
66 CGAATAGGAGAGTTCA
* *
68886636 CCAAAAGATTATCAATAAAGAATTCGCCAGTGTTTCAA
1 CCAAAAGAGTATCAGTAAAGAATTCGCCAGTGTTTCAA
68886674 CGTTGTACTA
Statistics
Matches: 96, Mismatches: 21, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
80 4 0.04
81 92 0.96
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (81 bp):
CCAAAAGAGTATCAGTAAAGAATTCGCCAGTGTTTCAATGAACTAAGGGTTCGATAGTACTTCGA
CGAATAGGAGAGTTCA
Found at i:68894118 original size:15 final size:14
Alignment explanation
Indices: 68894097--68894151 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 14
68894087 GTATTGTAAA
*
68894097 TTGGATTTCCTTAT
1 TTGGATTTCTTTAT
68894111 TATGGATTTCTTTAT
1 T-TGGATTTCTTTAT
68894126 CTTGGATTTCTTTAT
1 -TTGGATTTCTTTAT
*
68894141 TCTGGACTTCT
1 T-TGGATTTCT
68894152 CCATCTCAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
14 2 0.06
15 33 0.92
16 1 0.03
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.56
Consensus pattern (14 bp):
TTGGATTTCTTTAT
Found at i:68903378 original size:17 final size:18
Alignment explanation
Indices: 68903351--68903384 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
68903341 AATTAAATAT
68903351 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
68903369 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
68903385 TAAAAATAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:68909114 original size:43 final size:43
Alignment explanation
Indices: 68909067--68909223 Score: 183
Period size: 43 Copynumber: 3.7 Consensus size: 43
68909057 TCACATATCA
* * * *
68909067 ATGCCACTATCCCATACAGGGTCTTACACAAAATCGAT-TAACG
1 ATGCCAATGTCCCATACATGGTCTTACACATAATC-ATATAACG
* * *
68909110 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATATAATG
1 ATGCCAATGTCCCATACATGGTCTTACACATAATCATATAACG
* *
68909153 ATGCCAATGTCCCATACATGGTCTTACACATAATCACA-ATACA
1 ATGCCAATGTCCCATACATGGTCTTACACATAATCATATA-ACG
* *
68909196 ATGCCAATGTCCCAGACATTGTCTTACA
1 ATGCCAATGTCCCATACATGGTCTTACA
68909224 TGTAGTCTCA
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
42 3 0.03
43 95 0.97
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCATACATGGTCTTACACATAATCATATAACG
Found at i:68909200 original size:86 final size:86
Alignment explanation
Indices: 68909041--68909237 Score: 227
Period size: 86 Copynumber: 2.3 Consensus size: 86
68909031 TATCCTAGAT
* * * * *
68909041 ATGGTCTTACATGTTATCACATATCAATGCCACTATCCCATACAGGGTCTTACACAAAATCGATT
1 ATGGTCTTACACGTAATCACATATCAATGCCAATATCCCATACAGGGTCTTACACAAAATCCAAT
*
68909106 AACGATGCCAATGTCCCAGAC
66 AACAATGCCAATGTCCCAGAC
* * * * *
68909127 ATGGTCTTACACGTAATCATATAAT-GATGCCAATGTCCCATACATGGTCTTACACATAATCACA
1 ATGGTCTTACACGTAATCACAT-ATCAATGCCAATATCCCATACAGGGTCTTACACAAAATC-CA
68909191 AT-ACAATGCCAATGTCCCAGAC
64 ATAACAATGCCAATGTCCCAGAC
* * * *
68909213 ATTGTCTTACATGTAGTCTCATATC
1 ATGGTCTTACACGTAATCACATATC
68909238 GGGATCCTAA
Statistics
Matches: 92, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
85 2 0.02
86 86 0.93
87 4 0.04
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.29
Consensus pattern (86 bp):
ATGGTCTTACACGTAATCACATATCAATGCCAATATCCCATACAGGGTCTTACACAAAATCCAAT
AACAATGCCAATGTCCCAGAC
Found at i:68915779 original size:20 final size:20
Alignment explanation
Indices: 68915734--68915830 Score: 72
Period size: 20 Copynumber: 4.8 Consensus size: 20
68915724 AATGCAATAA
68915734 AGAGGCACCAAAGTGCAAAC
1 AGAGGCACCAAAGTGCAAAC
* *
68915754 ACAGGCA-CAAATGTGCAAGC
1 AGAGGCACCAAA-GTGCAAAC
* **
68915774 AGAGGCATCGTAGTGCAAATC
1 AGAGGCACCAAAGTGCAAA-C
* * * *
68915795 AGAGACATCAAAGTG-TAAT
1 AGAGGCACCAAAGTGCAAAC
*
68915814 AGAGGCACCGAAGTGCA
1 AGAGGCACCAAAGTGCA
68915831 TAATATAGGC
Statistics
Matches: 58, Mismatches: 15, Indels: 8
0.72 0.19 0.10
Matches are distributed among these distances:
19 16 0.28
20 27 0.47
21 15 0.26
ACGTcount: A:0.40, C:0.21, G:0.27, T:0.12
Consensus pattern (20 bp):
AGAGGCACCAAAGTGCAAAC
Found at i:68915809 original size:21 final size:20
Alignment explanation
Indices: 68915734--68915809 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
68915724 AATGCAATAA
*
68915734 AGAGGCACCAAAGTGCAAAC
1 AGAGGCATCAAAGTGCAAAC
* *
68915754 ACAGGCA-CAAATGTGCAAGC
1 AGAGGCATCAAA-GTGCAAAC
**
68915774 AGAGGCATCGTAGTGCAAATC
1 AGAGGCATCAAAGTGCAAA-C
*
68915795 AGAGACATCAAAGTG
1 AGAGGCATCAAAGTG
68915810 TAATAGAGGC
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
19 4 0.09
20 25 0.57
21 15 0.34
ACGTcount: A:0.41, C:0.21, G:0.26, T:0.12
Consensus pattern (20 bp):
AGAGGCATCAAAGTGCAAAC
Found at i:68915840 original size:21 final size:21
Alignment explanation
Indices: 68915810--68915851 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
68915800 CATCAAAGTG
68915810 TAATAGAGGCACCGAAGTGCA
1 TAATAGAGGCACCGAAGTGCA
* * *
68915831 TAATATAGGCACTGAATTGCA
1 TAATAGAGGCACCGAAGTGCA
68915852 AATCTCGTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (21 bp):
TAATAGAGGCACCGAAGTGCA
Found at i:68920343 original size:18 final size:18
Alignment explanation
Indices: 68920320--68920354 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
68920310 TTGGCCCATT
68920320 TCAGTAA-TAGTAGCAGTG
1 TCAGTAATTAGT-GCAGTG
68920338 TCAGTAATTAGTGCAGT
1 TCAGTAATTAGTGCAGT
68920355 AACCATGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.31, C:0.11, G:0.26, T:0.31
Consensus pattern (18 bp):
TCAGTAATTAGTGCAGTG
Found at i:68920383 original size:18 final size:19
Alignment explanation
Indices: 68920339--68920388 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
68920329 GTAGCAGTGT
*
68920339 CAGTAATTAGTGCAGTAAC
1 CAGTAATCAGTGCAGTAAC
* *
68920358 CA-TGATCAATGCAGTAA-
1 CAGTAATCAGTGCAGTAAC
68920375 CAGTAATCAGTGCA
1 CAGTAATCAGTGCA
68920389 AAATGCAAAC
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 2 0.08
18 21 0.84
19 2 0.08
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (19 bp):
CAGTAATCAGTGCAGTAAC
Found at i:68920986 original size:27 final size:27
Alignment explanation
Indices: 68920801--68920987 Score: 186
Period size: 27 Copynumber: 7.0 Consensus size: 27
68920791 TATTTTACAA
* *
68920801 GGGTATTACAGTCATTTTACCCTACAG
1 GGGTATTTCAGTCATTTTACCCTATAG
* * * *
68920828 AGGTATTACAGTCATTTTACCTTACAG
1 GGGTATTTCAGTCATTTTACCCTATAG
* * *
68920855 AGGTATTACAGTCATTTTATCCTAT-G
1 GGGTATTTCAGTCATTTTACCCTATAG
*
68920881 AGGGTATTAT-AGTCA-TTTACCCTATGG
1 -GGGTATT-TCAGTCATTTTACCCTATAG
68920908 GGGTATTAT-AGTCATTTTACCCTATAG
1 GGGTATT-TCAGTCATTTTACCCTATAG
* *
68920935 GGGTATTT-TGATCATTTTACCCTATGG
1 GGGTATTTCAG-TCATTTTACCCTATAG
*
68920962 GGGTATTTCGGTCATTTTACCCTATA
1 GGGTATTTCAGTCATTTTACCCTATA
68920988 ATGGTAAAAT
Statistics
Matches: 141, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
26 26 0.18
27 114 0.81
28 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTCAGTCATTTTACCCTATAG
Found at i:68920986 original size:54 final size:54
Alignment explanation
Indices: 68920801--68920987 Score: 218
Period size: 54 Copynumber: 3.5 Consensus size: 54
68920791 TATTTTACAA
* * ** * **
68920801 GGGTATTACAGTCATTTTACCCTACAGAGGTATTACAGTCATTTTACCTTACAG
1 GGGTATTACAGTCATTTTACCCTATAGGGGTATTTTAGTCATTTTACCCTATGG
* * *
68920855 AGGTATTACAGTCATTTTATCCTAT-GAGGGTATTATAGTCA-TTTACCCTATGG
1 GGGTATTACAGTCATTTTACCCTATAG-GGGTATTTTAGTCATTTTACCCTATGG
*
68920908 GGGTATTATAGTCATTTTACCCTATAGGGGTATTTT-GATCATTTTACCCTATGG
1 GGGTATTACAGTCATTTTACCCTATAGGGGTATTTTAG-TCATTTTACCCTATGG
* *
68920962 GGGTATTTCGGTCATTTTACCCTATA
1 GGGTATTACAGTCATTTTACCCTATA
68920988 ATGGTAAAAT
Statistics
Matches: 114, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
52 1 0.01
53 43 0.38
54 70 0.61
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.40
Consensus pattern (54 bp):
GGGTATTACAGTCATTTTACCCTATAGGGGTATTTTAGTCATTTTACCCTATGG
Found at i:68920993 original size:27 final size:27
Alignment explanation
Indices: 68920781--68920993 Score: 161
Period size: 27 Copynumber: 7.9 Consensus size: 27
68920771 GTAGAACAAA
*** *
68920781 TCAGTCATTTTATTTTACAAGGGTATT
1 TCAGTCATTTTACCCTATAAGGGTATT
* *
68920808 ACAGTCATTTTACCCTA-CAGAGGTATT
1 TCAGTCATTTTACCCTATAAG-GGTATT
*
68920835 ACAGTCATTTTA-CCT-TACAGAGGTATT
1 TCAGTCATTTTACCCTATA-AG-GGTATT
* * *
68920862 ACAGTCATTTTATCCTATGAGGGTATT
1 TCAGTCATTTTACCCTATAAGGGTATT
**
68920889 AT-AGTCA-TTTACCCTATGGGGGTATT
1 -TCAGTCATTTTACCCTATAAGGGTATT
*
68920915 AT-AGTCATTTTACCCTATAGGGGTATT
1 -TCAGTCATTTTACCCTATAAGGGTATT
* **
68920942 T-TGATCATTTTACCCTATGGGGGTATT
1 TCAG-TCATTTTACCCTATAAGGGTATT
* *
68920969 TCGGTCATTTTACCCTATAATGGTA
1 TCAGTCATTTTACCCTATAAGGGTA
68920994 AAATCATCAT
Statistics
Matches: 160, Mismatches: 17, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
26 31 0.19
27 122 0.76
28 6 0.04
29 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.40
Consensus pattern (27 bp):
TCAGTCATTTTACCCTATAAGGGTATT
Found at i:68921003 original size:54 final size:54
Alignment explanation
Indices: 68920801--68921061 Score: 165
Period size: 54 Copynumber: 4.9 Consensus size: 54
68920791 TATTTTACAA
* * ** * **
68920801 GGGTATTACAGTCATTTTACCCTA-CAGAGGTATTA-CAGTCATTTTACCTTACAG
1 GGGTATTATAGTCATTTTACCCTATAAG-GGTAAAATCA-TCATTTTACCCTATGG
* * * * **
68920855 AGGTATTACAGTCATTTTATCCTATGAGGGTATTAT-AGTCA-TTTACCCTATGG
1 GGGTATTATAGTCATTTTACCCTATAAGGGTAAAATCA-TCATTTTACCCTATGG
* *** *
68920908 GGGTATTATAGTCATTTTACCCTATAGGGGTATTTTGATCATTTTACCCTATGG
1 GGGTATTATAGTCATTTTACCCTATAAGGGTAAAATCATCATTTTACCCTATGG
* * * * **
68920962 GGGTATT-TCGGTCATTTTACCCTATAATGGTAAAATCATCATTTTATCATATAA
1 GGGTATTAT-AGTCATTTTACCCTATAAGGGTAAAATCATCATTTTACCCTATGG
* * * * * *
68921016 GGGCAATATCGTCATTTTATCAC-ATAAGGGCAATATCATCATTTTA
1 GGGTATTATAGTCATTTTA-CCCTATAAGGGTAAAATCATCATTTTA
68921062 TCATATGAGG
Statistics
Matches: 170, Mismatches: 30, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
53 43 0.25
54 122 0.72
55 5 0.03
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (54 bp):
GGGTATTATAGTCATTTTACCCTATAAGGGTAAAATCATCATTTTACCCTATGG
Found at i:68921004 original size:107 final size:107
Alignment explanation
Indices: 68920801--68921005 Score: 234
Period size: 107 Copynumber: 1.9 Consensus size: 107
68920791 TATTTTACAA
*
68920801 GGGTATTACAGTCATTTTACCCTACAGAGGTATTACAGTCATTTTACCTTACAGAGGTATTACAG
1 GGGTATTACAGTCATTTTACCCTACAGAGGTATTACAGTCATTTTACCCTACAGAGGTATTACAG
* * **
68920866 TCATTTTATCCTATGAGGGTATTATAGTCATTTACCCTATGG
66 TCATTTTACCCTATAAGGGTAAAATAGTCATTTACCCTATGG
* * * ** ** * * *
68920908 GGGTATTATAGTCATTTTACCCTATAGGGGTATT-TTGATCATTTTACCCTATGGGGGTATTTCG
1 GGGTATTACAGTCATTTTACCCTACAGAGGTATTACAG-TCATTTTACCCTACAGAGGTATTACA
*
68920972 GTCATTTTACCCTATAATGGTAAAATCA-TCATTT
65 GTCATTTTACCCTATAAGGGTAAAAT-AGTCATTT
68921006 TATCATATAA
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
106 1 0.01
107 78 0.98
108 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.40
Consensus pattern (107 bp):
GGGTATTACAGTCATTTTACCCTACAGAGGTATTACAGTCATTTTACCCTACAGAGGTATTACAG
TCATTTTACCCTATAAGGGTAAAATAGTCATTTACCCTATGG
Found at i:68921072 original size:27 final size:27
Alignment explanation
Indices: 68920973--68921072 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
68920963 GGTATTTCGG
* * * * *
68920973 TCATTTTACCCTATAATGGTAAAATCA
1 TCATTTTATCATATAAGGGCAATATCA
*
68921000 TCATTTTATCATATAAGGGCAATATCG
1 TCATTTTATCATATAAGGGCAATATCA
*
68921027 TCATTTTATCACATAAGGGCAATATCA
1 TCATTTTATCATATAAGGGCAATATCA
*
68921054 TCATTTTATCATATGAGGG
1 TCATTTTATCATATAAGGG
68921073 TTCAGGTATG
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (27 bp):
TCATTTTATCATATAAGGGCAATATCA
Found at i:68922502 original size:12 final size:11
Alignment explanation
Indices: 68922485--68922527 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 11
68922475 TCCCCTTAAT
68922485 TCTCTCCTCATA
1 TCTCTCCTCA-A
68922497 TCTCTCCTCAA
1 TCTCTCCTCAA
*
68922508 CTCCCTCCTACAA
1 -TCTCTCCT-CAA
68922521 TCTCTCC
1 TCTCTCC
68922528 ATGACCAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 1 0.04
12 23 0.85
13 3 0.11
ACGTcount: A:0.16, C:0.49, G:0.00, T:0.35
Consensus pattern (11 bp):
TCTCTCCTCAA
Found at i:68944817 original size:17 final size:19
Alignment explanation
Indices: 68944787--68944823 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
68944777 TTAACAATAA
68944787 TTTTATCTCAAAAA-TATT
1 TTTTATCTCAAAAAGTATT
*
68944805 TTTTAT-TCTAAAAGTATT
1 TTTTATCTCAAAAAGTATT
68944823 T
1 T
68944824 CTGAAAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.35, C:0.08, G:0.03, T:0.54
Consensus pattern (19 bp):
TTTTATCTCAAAAAGTATT
Found at i:68947187 original size:18 final size:17
Alignment explanation
Indices: 68947157--68947190 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
68947147 CTGATTATCT
68947157 AATTAAATTTTAAATAA
1 AATTAAATTTTAAATAA
*
68947174 AATTTAATTATTAAATA
1 AATTAAATT-TTAAATA
68947191 TAATAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTAAATTTTAAATAA
Found at i:68947442 original size:321 final size:318
Alignment explanation
Indices: 68947056--68947634 Score: 955
Period size: 321 Copynumber: 1.8 Consensus size: 318
68947046 ATTATTGATA
68947056 ATATATAAATAAATATTTAAGTTAAATCAAATGGATAATTATCTAATTAATTTTCTTATTTAATT
1 ATATATAAATAAATATTTAAGTTAAATCAAATGGATAATTATCTAATTAATTTTCTTATTTAATT
* *
68947121 AAACATTTACCTAAATTTTAAAAATTCTGATTATCTAATT-AAATTTTAAATAAAATTTAATTAT
66 AAACATTTACCTAAAATCTAAAAATTCTGATTATCTAATTAAAATTTT-AATAAAATTTAATTAT
*
68947185 TAAATATAATAATTATCCAAATTATTATATTTAATTTTATTATTTAATT-AATTAATATTTTTAT
130 TAAATATAATAATTATCCAAATTATTATATTTAA-TTTATTATTTAATTAAATAAATA-TTTTAT
* ** * *
68947249 AATCAAATGGATAATATATAAAAATTTTGAAAATGTAATTTTTACTTACATTTTAATTTTACTTA
193 AATCAAATGGATAATATACAAAAAAATT--AAATGTAAATTGTACTTACATTTTAATTTTACTTA
68947314 AATTATCCAAATTACATAATTAATTTTTTTAAATTGTTTAAATTAAAATTTAAAATAGATAAT
256 AATTATCCAAATTACATAATTAATTTTTTTAAATTGTTTAAATTAAAATTTAAAATAGATAAT
* *
68947377 ATATATAAATAAATATTTAAGTTAAATCAAATGGTTAATTATCTAATTAATTTTTTTATTTAATT
1 ATATATAAATAAATATTTAAGTTAAATCAAATGGATAATTATCTAATTAATTTTCTTATTTAATT
* * *
68947442 AAATATTTATCTAAAATCTAAAGATTCTGATTATCTAATTAAAATTTTAATAAAATTTAATTATT
66 AAACATTTACCTAAAATCTAAAAATTCTGATTATCTAATTAAAATTTTAATAAAATTTAATTATT
*
68947507 AAATATAATAATTATCCAAATTATTATATTTAATTTCTTATTTAATTAAATAAATATTTTATAAT
131 AAATATAATAATTATCCAAATTATTATATTTAATTTATTATTTAATTAAATAAATATTTTATAAT
* *
68947572 CAAATGGATAATATACAAAAAAATTATATGTAAATTGTACTTATATTTTAATTTTACTTAAAT
196 CAAATGGATAATATACAAAAAAATTAAATGTAAATTGTACTTACATTTTAATTTTACTTAAAT
68947635 CATCTAAAAT
Statistics
Matches: 240, Mismatches: 16, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
318 34 0.14
320 44 0.18
321 155 0.65
322 7 0.03
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.46
Consensus pattern (318 bp):
ATATATAAATAAATATTTAAGTTAAATCAAATGGATAATTATCTAATTAATTTTCTTATTTAATT
AAACATTTACCTAAAATCTAAAAATTCTGATTATCTAATTAAAATTTTAATAAAATTTAATTATT
AAATATAATAATTATCCAAATTATTATATTTAATTTATTATTTAATTAAATAAATATTTTATAAT
CAAATGGATAATATACAAAAAAATTAAATGTAAATTGTACTTACATTTTAATTTTACTTAAATTA
TCCAAATTACATAATTAATTTTTTTAAATTGTTTAAATTAAAATTTAAAATAGATAAT
Found at i:68948796 original size:20 final size:20
Alignment explanation
Indices: 68948771--68948810 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
68948761 AAATTTACTA
68948771 AAATAATATTACA-TATTTTT
1 AAATAA-ATTACATTATTTTT
*
68948791 AAATAAGTTACATTATTTTT
1 AAATAAATTACATTATTTTT
68948811 TTAACAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (20 bp):
AAATAAATTACATTATTTTT
Found at i:68949180 original size:17 final size:16
Alignment explanation
Indices: 68949158--68949190 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
68949148 GTTTCAAACC
68949158 TTATATTTTATTATTTA
1 TTATATTTTA-TATTTA
68949175 TTATATTTTATATTTA
1 TTATATTTTATATTTA
68949191 AATGCACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATATTTTATATTTA
Found at i:68956831 original size:17 final size:17
Alignment explanation
Indices: 68956806--68956844 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
68956796 AAACACACAA
68956806 TTTTATCTTCTTCTTTT
1 TTTTATCTTCTTCTTTT
* *
68956823 TTTTTTCTTTTTCTTTT
1 TTTTATCTTCTTCTTTT
68956840 TTTTA
1 TTTTA
68956845 ATTTTCCCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTATCTTCTTCTTTT
Found at i:68956910 original size:33 final size:33
Alignment explanation
Indices: 68956872--68956934 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
68956862 CTCTCTTTCC
*
68956872 AATAATTTAATATAATAATACATTAAATATTTA
1 AATAATTTAATATAATAATACATAAAATATTTA
* * *
68956905 AATAATTTAGTATAATGATATATAAAATAT
1 AATAATTTAATATAATAATACATAAAATAT
68956935 ATCAATTTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (33 bp):
AATAATTTAATATAATAATACATAAAATATTTA
Found at i:68958547 original size:36 final size:36
Alignment explanation
Indices: 68958500--68958572 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
68958490 TTGTGAAAGG
68958500 TGTTAGCATGAAAACACCTAAAAGGATTATTTTGCA
1 TGTTAGCATGAAAACACCTAAAAGGATTATTTTGCA
68958536 TGTTAGCATGAAAACACCTAAAAGGATTATTTTGCA
1 TGTTAGCATGAAAACACCTAAAAGGATTATTTTGCA
68958572 T
1 T
68958573 AAATTGCAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (36 bp):
TGTTAGCATGAAAACACCTAAAAGGATTATTTTGCA
Found at i:68959290 original size:45 final size:45
Alignment explanation
Indices: 68959189--68959305 Score: 123
Period size: 45 Copynumber: 2.6 Consensus size: 45
68959179 GAGAGCTAGT
*
68959189 GTAAGACATGTCT-GGACATGCATCGGCCTCGAGACGTAAGCCAAT
1 GTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGT-AGCCAAC
* * * *
68959234 GTAAGAAATGTCTGGGACATGCATCGG-CTACTAGATGT-GTCAAC
1 GTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTAGCCAAC
*
68959278 GTAAGACTATGTCTGAGACATGGCATCG
1 GTAAGAC-ATGTCTGGGACAT-GCATCG
68959306 ACACATATAT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
44 10 0.16
45 26 0.43
46 25 0.41
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (45 bp):
GTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAGCCAAC
Found at i:68967709 original size:25 final size:25
Alignment explanation
Indices: 68967672--68967721 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
68967662 TTGTAAATCA
68967672 GAAAAATATCTTTAGA-AATTTTCT
1 GAAAAATATCTTTAGAGAATTTTCT
*
68967696 GAAATAATCTCTTTAGAGAATTTTCT
1 GAAA-AATATCTTTAGAGAATTTTCT
68967722 CTCTACAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.17
25 11 0.48
26 8 0.35
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (25 bp):
GAAAAATATCTTTAGAGAATTTTCT
Found at i:68967955 original size:37 final size:36
Alignment explanation
Indices: 68967893--68967968 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
68967883 GATAATCAAT
*
68967893 TTAATATTAATTTAATAAAATACTATTAAGATAAATA
1 TTAATATTAATTTAATAAAATACTATTAAAAT-AATA
*
68967930 TTAA-ATTAAATTTAATATTAA-ACTATTAAAATAATA
1 TTAATATT-AATTTAATA-AAATACTATTAAAATAATA
68967966 TTA
1 TTA
68967969 TTTCTGGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 10 0.29
37 23 0.66
38 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (36 bp):
TTAATATTAATTTAATAAAATACTATTAAAATAATA
Found at i:68975048 original size:25 final size:25
Alignment explanation
Indices: 68975002--68975070 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
68974992 CACAGCTCTT
* * *
68975002 ATGAGCTTCCCAATACGT-AGCTCGC
1 ATGAGCTTCCCATTA-TTCAGCTCAC
* *
68975027 ATGAGCTTTCCGTTATTCAGCTCAC
1 ATGAGCTTCCCATTATTCAGCTCAC
68975052 ATGAGCTTCCCATTATTCA
1 ATGAGCTTCCCATTATTCA
68975071 ACTGGGAAGA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 1 0.03
25 35 0.97
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (25 bp):
ATGAGCTTCCCATTATTCAGCTCAC
Found at i:68976332 original size:162 final size:162
Alignment explanation
Indices: 68976047--68976360 Score: 441
Period size: 162 Copynumber: 1.9 Consensus size: 162
68976037 CATGTGTCAT
* *
68976047 TGTATATTTAAACTTGTGCAAGTCAGTATGCTCAACACGGCCTAGCACACGAGCATGTGACTTGG
1 TGTATATTTAAAATTGTGCAAGTCAGTATGCTCAACACGGCCTAGCACACGAGCATGTGACTTGA
* * * * *
68976112 CCGTATGACCCAAGTTATGGAGTTACACGGGCAAGAACATGGGCTGAGACATGGCCGTGTGTCCC
66 CCGTATGACCCAAGTCAGGGAGTTACACAGGCAAGAACACGGGCTGAGACACGGCCGTGTGTCCC
* *
68976177 TATTTTGATTGCCCACACGGCCGTGTGTCTCC
131 TATTTCGAATGCCCACACGGCCGTGTGTCTCC
* * *
68976209 TGTATCTTTAAAATTGTGCAAG-CTAGTATGCTCAACACGGCCTAGCACACGGGCGTGTGACTTG
1 TGTATATTTAAAATTGTGCAAGTC-AGTATGCTCAACACGGCCTAGCACACGAGCATGTGACTTG
* * * * * * *
68976273 ACTGTGTGACCTAAGTCAGGGAGTTACACAGGTACGGACACGGGCTGAGACACGGCCGTGTGTTC
65 ACCGTATGACCCAAGTCAGGGAGTTACACAGGCAAGAACACGGGCTGAGACACGGCCGTGTGTCC
68976338 CTATTTCGAATGCCCACACGGCC
130 CTATTTCGAATGCCCACACGGCC
68976361 TGAGACACTA
Statistics
Matches: 132, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
161 1 0.01
162 131 0.99
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (162 bp):
TGTATATTTAAAATTGTGCAAGTCAGTATGCTCAACACGGCCTAGCACACGAGCATGTGACTTGA
CCGTATGACCCAAGTCAGGGAGTTACACAGGCAAGAACACGGGCTGAGACACGGCCGTGTGTCCC
TATTTCGAATGCCCACACGGCCGTGTGTCTCC
Found at i:68983835 original size:40 final size:40
Alignment explanation
Indices: 68983751--68983937 Score: 220
Period size: 40 Copynumber: 4.7 Consensus size: 40
68983741 TTTGAATGAT
* * * *
68983751 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA
** *
68983791 ATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAA
68983831 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
*
68983871 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA-A
* *
68983912 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGTTAAGTCCCGAAGGCATTTG
68983938 AACGAGGAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
39 1 0.01
40 118 0.89
41 12 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
Found at i:68983951 original size:40 final size:39
Alignment explanation
Indices: 68983753--68983970 Score: 167
Period size: 40 Copynumber: 5.5 Consensus size: 39
68983743 TGAATGATAT
* * * *
68983753 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAG-GACTATAA
** * *
68983793 CCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTA-AA
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAG-GACTATAA
*
68983832 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AA
1 -CCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-GACTATAA
*
68983872 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-GACTATAA
* * ** *
68983913 CCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGGA-CTATAA
* *
68983953 CC-GGTTAAATTCCGAAGG
1 CCGGGTTAAGTCCCGAAGG
68983971 TACGTGATTT
Statistics
Matches: 152, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
39 15 0.10
40 127 0.84
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGGACTATAA
Found at i:68983955 original size:80 final size:79
Alignment explanation
Indices: 68983805--68983970 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 79
68983795 GGACTAAGAT
* * **
68983805 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGATACTA
*
68983870 AATCCGGGTTAAGTC
66 AATCC-GGTTAAATC
* * *
68983885 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGGA-GC
1 CCGAAGGCATTTGTGCGAGATACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGA-GATAC
* *
68983948 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
68983964 CCGAAGG
1 CCGAAGG
68983971 TACGTGATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
79 14 0.19
80 56 0.76
81 4 0.05
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGATACTA
AATCCGGTTAAATC
Found at i:68985743 original size:5 final size:5
Alignment explanation
Indices: 68985733--68985758 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
68985723 ATTAAGTGAT
68985733 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
68985759 AACCTATTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:68986232 original size:50 final size:49
Alignment explanation
Indices: 68986150--68986254 Score: 120
Period size: 50 Copynumber: 2.1 Consensus size: 49
68986140 CACAGCTCTT
** * * * * * *
68986150 ATGAGCTTCCCGATACTCAGTTTAGATTAGCTTTCTGTTATTTAGCTCGC
1 ATGAGCTTCCCGATACTCAACTCACATGAGCTTCCCGTT-TATAGCTCGC
*
68986200 ATGAGCTTCCCGATACTCAACTCACATGAGCTTCCCGTTTATAGCTCGT
1 ATGAGCTTCCCGATACTCAACTCACATGAGCTTCCCGTTTATAGCTCGC
68986249 ATGAGC
1 ATGAGC
68986255 ATACATGTAC
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
49 14 0.30
50 32 0.70
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (49 bp):
ATGAGCTTCCCGATACTCAACTCACATGAGCTTCCCGTTTATAGCTCGC
Found at i:68986543 original size:32 final size:32
Alignment explanation
Indices: 68986507--68986606 Score: 77
Period size: 32 Copynumber: 3.2 Consensus size: 32
68986497 CTTTTGGCCA
68986507 AAATGGTTTGGATATGTTTATATGCTTGCCTT
1 AAATGGTTTGGATATGTTTATATGCTTGCCTT
* * *
68986539 AAATGTGATTAAATGG-TAAG-TTA-A--ATTGCC-A
1 AAATG-G-TT---TGGATATGTTTATATGCTTGCCTT
*
68986570 AAATGGTTTGGATATGTTTATATGCTTACCTT
1 AAATGGTTTGGATATGTTTATATGCTTGCCTT
68986602 AAATG
1 AAATG
68986607 TGATTAAATG
Statistics
Matches: 50, Mismatches: 7, Indels: 22
0.63 0.09 0.28
Matches are distributed among these distances:
26 3 0.06
27 3 0.06
28 3 0.06
29 3 0.06
30 1 0.02
31 9 0.18
32 15 0.30
33 1 0.02
34 3 0.06
35 3 0.06
36 3 0.06
37 3 0.06
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (32 bp):
AAATGGTTTGGATATGTTTATATGCTTGCCTT
Found at i:68986580 original size:63 final size:63
Alignment explanation
Indices: 68986503--68986628 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
68986493 TAGGCTTTTG
*
68986503 GCCAAAATGGTTTGGATATGTTTATATGCTTGCCTTAAATGTGATTAAATGGTAAGTTAAATT
1 GCCAAAATGGTTTGGATATGTTTATATGCTTACCTTAAATGTGATTAAATGGTAAGTTAAATT
68986566 GCCAAAATGGTTTGGATATGTTTATATGCTTACCTTAAATGTGATTAAATGGTAAGTTAAATT
1 GCCAAAATGGTTTGGATATGTTTATATGCTTACCTTAAATGTGATTAAATGGTAAGTTAAATT
68986629 ATGTATTATA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.40
Consensus pattern (63 bp):
GCCAAAATGGTTTGGATATGTTTATATGCTTACCTTAAATGTGATTAAATGGTAAGTTAAATT
Found at i:68991299 original size:20 final size:20
Alignment explanation
Indices: 68991271--68991327 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
68991261 AAGATTATGA
*
68991271 ACCACTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
68991291 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* **
68991311 TCCATTTTATTTACTTA
1 ACCATTCCATTTACTTA
68991328 GCATAAACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.25, C:0.28, G:0.00, T:0.47
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:68991313 original size:15 final size:16
Alignment explanation
Indices: 68991285--68991317 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
68991275 CTCCATTTAC
68991285 TTACTTACCATTCCAT
1 TTACTTACCATTCCAT
*
68991301 TTACTTA-CTTTCCAT
1 TTACTTACCATTCCAT
68991316 TT
1 TT
68991318 TATTTACTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.21, C:0.27, G:0.00, T:0.52
Consensus pattern (16 bp):
TTACTTACCATTCCAT
Found at i:68997916 original size:20 final size:20
Alignment explanation
Indices: 68997848--68997916 Score: 67
Period size: 20 Copynumber: 3.5 Consensus size: 20
68997838 TTCAACTATG
*
68997848 ATTAAACTTAATCACTTTAAT
1 ATTAAA-TTAATCACATTAAT
68997869 ATTAAATT--T-A-ATTTAAT
1 ATTAAATTAATCACA-TTAAT
68997886 ATTAAGA-TAATCACATTAAT
1 ATTAA-ATTAATCACATTAAT
68997906 ATTAAATTAAT
1 ATTAAATTAAT
68997917 AAAAAAATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 15
0.71 0.02 0.27
Matches are distributed among these distances:
17 12 0.30
18 2 0.05
19 2 0.05
20 17 0.43
21 7 0.17
ACGTcount: A:0.48, C:0.07, G:0.01, T:0.43
Consensus pattern (20 bp):
ATTAAATTAATCACATTAAT
Found at i:69000533 original size:21 final size:21
Alignment explanation
Indices: 69000506--69000564 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
69000496 AAAAATAATG
*
69000506 GTAGTGGTGAGATTAGTTACT
1 GTAGTGGTGAGATTAGATACT
*
69000527 TTAGTGGTGAGATTAGATACT
1 GTAGTGGTGAGATTAGATACT
* *
69000548 GTAGCGATGAGATTAGA
1 GTAGTGGTGAGATTAGA
69000565 AATAGCGGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.29, C:0.05, G:0.32, T:0.34
Consensus pattern (21 bp):
GTAGTGGTGAGATTAGATACT
Found at i:69000704 original size:18 final size:18
Alignment explanation
Indices: 69000668--69000710 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
69000658 TTATAATAAA
*
69000668 ATAAATAATTAAATTTAT
1 ATAAATAATTAAATATAT
69000686 ATAAAT-ATTAAATA-AT
1 ATAAATAATTAAATATAT
69000702 ATAACATAA
1 ATAA-ATAA
69000711 AATAAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 6 0.27
17 9 0.41
18 7 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAAATAATTAAATATAT
Found at i:69007644 original size:17 final size:16
Alignment explanation
Indices: 69007617--69007675 Score: 75
Period size: 17 Copynumber: 3.6 Consensus size: 16
69007607 ATGACATGCC
*
69007617 AATAAATAATTTTAAA
1 AATAAAAAATTTTAAA
69007633 ATATAAAAAATTTTAAGA
1 A-ATAAAAAATTTTAA-A
*
69007651 AATAAAAAA-TTAAAA
1 AATAAAAAATTTTAAA
69007666 AATAAAAAAT
1 AATAAAAAAT
69007676 CATGAAAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
15 10 0.26
16 5 0.13
17 21 0.55
18 2 0.05
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (16 bp):
AATAAAAAATTTTAAA
Found at i:69007663 original size:15 final size:15
Alignment explanation
Indices: 69007628--69007675 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
69007618 ATAAATAATT
*
69007628 TTAAAATATAAAAAA
1 TTAAAAAATAAAAAA
*
69007643 TTTTAAGAAATAAAAAA
1 --TTAAAAAATAAAAAA
69007660 TTAAAAAATAAAAAA
1 TTAAAAAATAAAAAA
69007675 T
1 T
69007676 CATGAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 15 0.54
17 13 0.46
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (15 bp):
TTAAAAAATAAAAAA
Found at i:69007883 original size:80 final size:80
Alignment explanation
Indices: 69007797--69007946 Score: 300
Period size: 80 Copynumber: 1.9 Consensus size: 80
69007787 TTTTTTTAAA
69007797 AGATTGATGATAAAATTTAACTCTTTTTAAAAATTAAGAGTAATTTAATTTAAAAAAATATTGAC
1 AGATTGATGATAAAATTTAACTCTTTTTAAAAATTAAGAGTAATTTAATTTAAAAAAATATTGAC
69007862 TAAATAGCGGTATTC
66 TAAATAGCGGTATTC
69007877 AGATTGATGATAAAATTTAACTCTTTTTAAAAATTAAGAGTAATTTAATTTAAAAAAATATTGAC
1 AGATTGATGATAAAATTTAACTCTTTTTAAAAATTAAGAGTAATTTAATTTAAAAAAATATTGAC
69007942 TAAAT
66 TAAAT
69007947 TAATAAAAAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 70 1.00
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (80 bp):
AGATTGATGATAAAATTTAACTCTTTTTAAAAATTAAGAGTAATTTAATTTAAAAAAATATTGAC
TAAATAGCGGTATTC
Found at i:69010627 original size:83 final size:83
Alignment explanation
Indices: 69010431--69010629 Score: 319
Period size: 84 Copynumber: 2.4 Consensus size: 83
69010421 ATGAGAAATT
69010431 AAATTAAATAAAATCTGTTTCCGGATTTATTCCCACCGATTAACAAAATTTTATTTGATTTTATT
1 AAATTAAATAAAATCTGTTT-CGGATTTATTCCCACCGATTAACAAAATTTTATTTGATTTTATT
*
69010496 TTGTTTTCAAATTAGAATA
65 TTGTTTCCAAATTAGAATA
* *
69010515 AAATTAAATAAAATCTGTTTCGGGATTTATTCCTACCGTTTAACAAAATTTTATTTGATTTTATT
1 AAATTAAATAAAATCTGTTTC-GGATTTATTCCCACCGATTAACAAAATTTTATTTGATTTTATT
69010580 TT-TTTCCAAATTAGAATA
65 TTGTTTCCAAATTAGAATA
* *
69010598 GAATTAAATAAAATATGTTTCGAGATTTATTC
1 AAATTAAATAAAATCTGTTTCG-GATTTATTC
69010630 TCGTCATTTA
Statistics
Matches: 108, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
82 1 0.01
83 44 0.41
84 63 0.58
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.44
Consensus pattern (83 bp):
AAATTAAATAAAATCTGTTTCGGATTTATTCCCACCGATTAACAAAATTTTATTTGATTTTATTT
TGTTTCCAAATTAGAATA
Found at i:69010649 original size:83 final size:81
Alignment explanation
Indices: 69010431--69010669 Score: 284
Period size: 83 Copynumber: 2.9 Consensus size: 81
69010421 ATGAGAAATT
*
69010431 AAATTAAATAAAATCTGTTTCCGGATTTATTCC-CACCGATTAACAAAATTTTATTTGATTTTAT
1 AAATTAAATAAAATCTGTTT-CGGATTTATTCCTCA---TTTAACAAAATTTTATTTGATTTTAT
*
69010495 TTTGTTTTCAAATTAGAATA
62 TTTGTTTCCAAATTAGAATA
*
69010515 AAATTAAATAAAATCTGTTTCGGGATTTATTCCTACCGTTTAACAAAATTTTATTTGATTTTATT
1 AAATTAAATAAAATCTGTTTC-GGATTTATTCCT--CATTTAACAAAATTTTATTTGATTTTATT
69010580 TT-TTTCCAAATTAGAATA
63 TTGTTTCCAAATTAGAATA
* * * * * * *
69010598 GAATTAAATAAAATATGTTTCGAGATTTATTCTCGTCATTTATCAAGATTTTATTCGATATTGTT
1 AAATTAAATAAAATCTGTTTCG-GATTTATTC-C-TCATTTAACAAAATTTTATTTGATTTTATT
69010663 TTGTTTC
63 TTGTTTC
69010670 TAAACCAAGA
Statistics
Matches: 136, Mismatches: 11, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
82 1 0.01
83 69 0.51
84 64 0.47
85 1 0.01
87 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.46
Consensus pattern (81 bp):
AAATTAAATAAAATCTGTTTCGGATTTATTCCTCATTTAACAAAATTTTATTTGATTTTATTTTG
TTTCCAAATTAGAATA
Found at i:69012748 original size:493 final size:493
Alignment explanation
Indices: 69011781--69012766 Score: 1767
Period size: 493 Copynumber: 2.0 Consensus size: 493
69011771 AATTAAATGA
69011781 TTTATATGTTTAATTATAAAGGTTAAATTTGTAATTCATAAAATAAACATGAATTAAGTAAAAAT
1 TTTATATGTTTAATTATAAAGGTTAAATTTGTAATTCATAAAATAAACATGAATTAAGTAAAAAT
* *
69011846 AAACCAAAATTTTCCTCCATTTTCATCTTCTACCACTGAAAATAAGAAAGAAAAAAGAAAAGCAT
66 AAACCAAAATTTTCCTCCATTTTCATCTTCTACCACCGAAAATAAGAAAGAAAAAAGAAAAACAT
* *
69011911 CCATGGGAGGTTTTTAGGGTTCGGCCACTTTATGATTTAATTGTAAGTCCGTTTTTGTCTCCTTT
131 CCATGGGAGGTTTTTAGGGTTCGGCCACTTTATGATCTAATTGTAAGTCCGTTTTTGTCCCCTTT
69011976 TTAATGATTTCTATGTTTTTGTGATCATTGCAACTAGTACTAGCTAGCCCAGGGACTATTTTGCA
196 TTAATGATTTCTATGTTTTTGTGATCATTGCAACTAGTACTAGCTAGCCCAGGGACTATTTTGCA
* * *
69012041 AAACTTTTTAAAGATTTTTAATGATGCCATTGATGAATATGTATGAGTTTTGAAGTTTCTTGATA
261 AAACTTGTTAAAGATTTTGAATGATGCCATTGATGAATATATATGAGTTTTGAAGTTTCTTGATA
* *
69012106 GATTTTGATTGCTTGTTGATAGATATACAAGTTTGGTTTAGTGATTTTTAGTGAAAATGCAAAAT
326 GATTTTGATTGCTTGTTGATAGATATACAAGTTTGGTTAAGTGATTTTTAATGAAAATGCAAAAT
* *
69012171 AGGGATTAAATTGAAAAATGTTAAAACTTTGTGGTTAAAATGTGAAATAAATGAAAAATATGGGT
391 AGGGATTAAATTGAAAAATGTTAAAACTTTGTGGTTAAAATGTGAAATAAATGAAAAAAATGGGC
* *
69012236 TACTAGAGGTATTTGGTAATTCGGCTAAGCATGGGTGT
456 TACTAGAGGTATATGGTAATTCGACTAAGCATGGGTGT
69012274 TTTATATGTTTAATTATAAAGGTTAAATTTGTAATTCATAAAATAAACATGAATTAAGTAAAAAT
1 TTTATATGTTTAATTATAAAGGTTAAATTTGTAATTCATAAAATAAACATGAATTAAGTAAAAAT
69012339 AAACCAAAATTTTCCTCCATTTTCATCTTCTACCACCGAAAATAAGAAAGAAAAAAGAAAAACAT
66 AAACCAAAATTTTCCTCCATTTTCATCTTCTACCACCGAAAATAAGAAAGAAAAAAGAAAAACAT
69012404 CCATGGGAGGTTTTTAGGGTTCGGCCACTTTATGATCTAATTGTAAGTCCGTTTTTGTCCCCTTT
131 CCATGGGAGGTTTTTAGGGTTCGGCCACTTTATGATCTAATTGTAAGTCCGTTTTTGTCCCCTTT
* *
69012469 TTAATGATTTCTATGTTTTTGTGATCATTGCAACTAGTACTAGCTAGCCCAGTGACTGTTTTGCA
196 TTAATGATTTCTATGTTTTTGTGATCATTGCAACTAGTACTAGCTAGCCCAGGGACTATTTTGCA
*
69012534 AAAC-TGTTAAAGATTTTGAATGATGTCATTGATGAATATATATGAGTTTTGAAGTTTCTTGATA
261 AAACTTGTTAAAGATTTTGAATGATGCCATTGATGAATATATATGAGTTTTGAAGTTTCTTGATA
* *
69012598 GATTTTTATTGCTTGTTGTTAGATATACAAGTTTGGTTAAGTGATTTTTAATGAAAATGCAAAAT
326 GATTTTGATTGCTTGTTGATAGATATACAAGTTTGGTTAAGTGATTTTTAATGAAAATGCAAAAT
* *
69012663 AGGGATTAAATTGAGAAATGTTGAAACTTTGTGGTTAAAATGTGAAATAAATGAAAAAAATGGGC
391 AGGGATTAAATTGAAAAATGTTAAAACTTTGTGGTTAAAATGTGAAATAAATGAAAAAAATGGGC
*
69012728 TACTAGAGGTATAATGGTAATTTGACTAAGCATGGGTGT
456 TACTAGAGGTAT-ATGGTAATTCGACTAAGCATGGGTGT
69012767 CTAGCATGGG
Statistics
Matches: 471, Mismatches: 21, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
492 190 0.40
493 281 0.60
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.37
Consensus pattern (493 bp):
TTTATATGTTTAATTATAAAGGTTAAATTTGTAATTCATAAAATAAACATGAATTAAGTAAAAAT
AAACCAAAATTTTCCTCCATTTTCATCTTCTACCACCGAAAATAAGAAAGAAAAAAGAAAAACAT
CCATGGGAGGTTTTTAGGGTTCGGCCACTTTATGATCTAATTGTAAGTCCGTTTTTGTCCCCTTT
TTAATGATTTCTATGTTTTTGTGATCATTGCAACTAGTACTAGCTAGCCCAGGGACTATTTTGCA
AAACTTGTTAAAGATTTTGAATGATGCCATTGATGAATATATATGAGTTTTGAAGTTTCTTGATA
GATTTTGATTGCTTGTTGATAGATATACAAGTTTGGTTAAGTGATTTTTAATGAAAATGCAAAAT
AGGGATTAAATTGAAAAATGTTAAAACTTTGTGGTTAAAATGTGAAATAAATGAAAAAAATGGGC
TACTAGAGGTATATGGTAATTCGACTAAGCATGGGTGT
Found at i:69012774 original size:13 final size:13
Alignment explanation
Indices: 69012756--69012781 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69012746 AATTTGACTA
69012756 AGCATGGGTGTCT
1 AGCATGGGTGTCT
69012769 AGCATGGGTGTCT
1 AGCATGGGTGTCT
69012782 TGAAATTTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.38, T:0.31
Consensus pattern (13 bp):
AGCATGGGTGTCT
Found at i:69022706 original size:42 final size:40
Alignment explanation
Indices: 69022642--69022724 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 40
69022632 TGAATGGAAT
69022642 GTAGGGAAAGGTTTGGGGGTTGATTTTTAGAGAGATAATA
1 GTAGGGAAAGGTTTGGGGGTTGATTTTTAGAGAGATAATA
*
69022682 GNNTAGGGAAAGGTTTGGGTGTTGATTTTTAGAGAGATAATA
1 G--TAGGGAAAGGTTTGGGGGTTGATTTTTAGAGAGATAATA
69022724 G
1 G
69022725 GGTGCAGGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
40 1 0.03
42 39 0.98
ACGTcount: A:0.29, C:0.00, G:0.36, T:0.33
Consensus pattern (40 bp):
GTAGGGAAAGGTTTGGGGGTTGATTTTTAGAGAGATAATA
Found at i:69032744 original size:20 final size:20
Alignment explanation
Indices: 69032719--69032756 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
69032709 TATAATAAAT
69032719 TTTAG-ATTTAGTTAGTTATA
1 TTTAGAATTTA-TTAGTTATA
69032739 TTTAGAATTTATTAGTTA
1 TTTAGAATTTATTAGTTA
69032757 GTCCTAAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (20 bp):
TTTAGAATTTATTAGTTATA
Found at i:69033685 original size:22 final size:22
Alignment explanation
Indices: 69033660--69033705 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
69033650 AGACAGTGAT
69033660 AATTTAAAGTGAAATTATACAA
1 AATTTAAAGTGAAATTATACAA
69033682 AATTTAAAGTGAAATTATACAA
1 AATTTAAAGTGAAATTATACAA
69033704 AA
1 AA
69033706 CGATTCTAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.57, C:0.04, G:0.09, T:0.30
Consensus pattern (22 bp):
AATTTAAAGTGAAATTATACAA
Found at i:69036900 original size:16 final size:16
Alignment explanation
Indices: 69036879--69036923 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
69036869 CGACAACTTG
*
69036879 GCTCAATGAAAAGCTA
1 GCTCAAGGAAAAGCTA
*
69036895 GCTCAAGGAAAATCTA
1 GCTCAAGGAAAAGCTA
69036911 GCTCAAGGAAAAG
1 GCTCAAGGAAAAG
69036924 GTAGATTGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (16 bp):
GCTCAAGGAAAAGCTA
Found at i:69038930 original size:26 final size:26
Alignment explanation
Indices: 69038901--69038956 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
69038891 TGGTACAAAT
69038901 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
69038927 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69038953 TGAT
1 TGAT
69038957 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:69044882 original size:40 final size:39
Alignment explanation
Indices: 69044784--69045046 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
69044774 TCCTCGTTCA
* * * *
69044784 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
69044823 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
69044862 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
69044902 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
69044942 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
69044982 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
69045023 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
69045047 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:69045006 original size:120 final size:119
Alignment explanation
Indices: 69044784--69045046 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
69044774 TCCTCGTTCA
* * *
69044784 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
69044849 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
69044902 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
69044967 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
69045023 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
69045047 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:69045055 original size:41 final size:41
Alignment explanation
Indices: 69044978--69045055 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
69044968 TTTGTATCTC
* * *
69044978 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
69045019 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
69045056 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:69052824 original size:40 final size:39
Alignment explanation
Indices: 69052733--69052839 Score: 142
Period size: 39 Copynumber: 2.7 Consensus size: 39
69052723 TCCTCGTTCA
* * * **
69052733 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCACAC
**
69052772 AATGCCTTCGGGACTTAACCCGGATTTAACAACTTGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCACAC
69052811 GAATGCCTTCGGGACTTAACCCGGATTTA
1 -AATGCCTTCGGGACTTAACCCGGATTTA
69052840 GTATCTCGCA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
39 32 0.53
40 28 0.47
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCACAC
Found at i:69052834 original size:79 final size:80
Alignment explanation
Indices: 69052733--69052915 Score: 212
Period size: 80 Copynumber: 2.3 Consensus size: 80
69052723 TCCTCGTTCA
* * *
69052733 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGGCCTTC-GGATCTTAACCCGGA
*
69052796 TTTA-ACAACTT-GCAC
65 TATATAC-ACTTAGCAC
* * * **
69052811 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTTAGTCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGGCCTTCGGATCTTAACCCGGA
*
69052876 TATATTCACTTAGCAC
65 TATATACACTTAGCAC
*
69052892 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
69052916 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
79 37 0.42
80 46 0.52
81 5 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGGCCTTCGGATCTTAACCCGGAT
ATATACACTTAGCAC
Found at i:69052859 original size:40 final size:40
Alignment explanation
Indices: 69052731--69052915 Score: 187
Period size: 40 Copynumber: 4.7 Consensus size: 40
69052721 GCTCCTCGTT
* * *
69052731 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* ** *
69052771 C-AATGCCTTCGGGACTTAACCCGGATTTAACAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
69052810 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
69052850 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69052891 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69052916 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 35 0.29
40 74 0.62
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69052924 original size:41 final size:41
Alignment explanation
Indices: 69052847--69052924 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
69052837 TTAGTATCTC
* * *
69052847 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
69052888 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
69052925 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:69057919 original size:26 final size:26
Alignment explanation
Indices: 69057890--69057997 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
69057880 TGGTACAAAT
69057890 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
69057916 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69057942 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
69057968 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69057994 TGAT
1 TGAT
69057998 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:69064156 original size:30 final size:30
Alignment explanation
Indices: 69064122--69064184 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
69064112 GCTTAACAAG
69064122 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
** *
69064152 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
69064182 CAA
1 CAA
69064185 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.59, C:0.14, G:0.02, T:0.25
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:69064235 original size:14 final size:14
Alignment explanation
Indices: 69064218--69064244 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
69064208 CAAACAATAA
69064218 CAACATAATAGTAG
1 CAACATAATAGTAG
69064232 CAACATAATAGTA
1 CAACATAATAGTA
69064245 AAATGGTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.11, T:0.22
Consensus pattern (14 bp):
CAACATAATAGTAG
Found at i:69065940 original size:53 final size:54
Alignment explanation
Indices: 69065883--69065996 Score: 128
Period size: 53 Copynumber: 2.1 Consensus size: 54
69065873 ATAAATGTTA
69065883 GTTATATAAAATAATATATATTATTATATAC-ATCT-T-TATAAATTTTATTATAT
1 GTTATATAAAATAATATATATTATT-TATACTAT-TATGTATAAATTTTATTATAT
*** * * *
69065936 GTTATAT-TTTTAATATATATTATTTATTCTATTATGTTTATATTTTATTATAT
1 GTTATATAAAATAATATATATTATTTATACTATTATGTATAAATTTTATTATAT
69065989 GTTATATA
1 GTTATATA
69065997 TTTTTACTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
51 5 0.10
52 17 0.33
53 29 0.57
ACGTcount: A:0.37, C:0.03, G:0.04, T:0.57
Consensus pattern (54 bp):
GTTATATAAAATAATATATATTATTTATACTATTATGTATAAATTTTATTATAT
Found at i:69065984 original size:21 final size:19
Alignment explanation
Indices: 69065918--69066000 Score: 93
Period size: 18 Copynumber: 4.6 Consensus size: 19
69065908 ATATACATCT
*
69065918 TTATAAATTTTATTATATG
1 TTATATATTTTATTATATG
* *
69065937 TTATAT-TTTTAATATATA
1 TTATATATTTTATTATATG
* *
69065955 TTATTTATTCTA-T-TATG
1 TTATATATTTTATTATATG
69065972 TT-TATATTTTATTATATG
1 TTATATATTTTATTATATG
69065990 TTATATATTTT
1 TTATATATTTT
69066001 TACTATATAT
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
16 7 0.13
17 6 0.12
18 22 0.42
19 17 0.33
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.64
Consensus pattern (19 bp):
TTATATATTTTATTATATG
Found at i:69066016 original size:53 final size:53
Alignment explanation
Indices: 69065896--69066018 Score: 151
Period size: 55 Copynumber: 2.3 Consensus size: 53
69065886 ATATAAAATA
69065896 ATATATATTATTATATACATCTTTATAAATTTTATTATATGTTATATTTTTAAT
1 ATATATATTATTATATACATCTTTAT-AATTTTATTATATGTTATATTTTTAAT
* * * *
69065950 ATATATTATTTATTCTAT-TATGTTTAT-ATTTTATTATATGTTATATATTTTTACT
1 ATATA-TA-TTATTATATACATCTTTATAATTTTATTATATG-T-TATATTTTTAAT
69066005 ATATATATTATTAT
1 ATATATATTATTAT
69066019 TTATTTTACC
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
53 19 0.32
54 8 0.13
55 25 0.42
56 8 0.13
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.60
Consensus pattern (53 bp):
ATATATATTATTATATACATCTTTATAATTTTATTATATGTTATATTTTTAAT
Found at i:69066036 original size:53 final size:53
Alignment explanation
Indices: 69065924--69066036 Score: 135
Period size: 53 Copynumber: 2.1 Consensus size: 53
69065914 ATCTTTATAA
* *
69065924 ATTTTATTATATGTTATATTTTTAATATATATTATTTATTCTATTATGTTTAT
1 ATTTTATTATATGTTATATTTTTAATATATATTATTTATTATATTATGTTTAC
*
69065977 ATTTTATTATATGTTATATATTTTTACTATATA-TA-TTATTAT-TTAT-TTTACC
1 ATTTTATTATATG-T-TATATTTTTAATATATATTATTTATTATATTATGTTTA-C
69066029 ATATTTAT
1 AT-TTTAT
69066037 ATGTAAAATA
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
51 4 0.08
52 6 0.11
53 24 0.45
54 3 0.06
55 16 0.30
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.63
Consensus pattern (53 bp):
ATTTTATTATATGTTATATTTTTAATATATATTATTTATTATATTATGTTTAC
Found at i:69066036 original size:60 final size:53
Alignment explanation
Indices: 69065894--69066038 Score: 134
Period size: 60 Copynumber: 2.6 Consensus size: 53
69065884 TTATATAAAA
* *
69065894 TAATATATATTA-TTA-TATA-CATCTTTATAAATTTTATTATATGTTATATTTT
1 TAATATATATTATTTATTCTACCATATTTAT--ATTTTATTATATGTTATATTTT
** *
69065946 TAATATATATTATTTATTCTATTATGTTTATATTTTATTATATGTTATATATTTTT
1 TAATATATATTATTTATTCTACCATATTTATATTTTATTATATG-T-TATA-TTTT
*
69066002 ACTATATATATTATTATTTATTTTACCATATTTATAT
1 --TA-ATATA-TATTATTTATTCTACCATATTTATAT
69066039 GTAAAATATT
Statistics
Matches: 76, Mismatches: 7, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
52 12 0.16
53 16 0.21
54 4 0.05
55 11 0.14
56 4 0.05
58 2 0.03
59 5 0.07
60 22 0.29
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (53 bp):
TAATATATATTATTTATTCTACCATATTTATATTTTATTATATGTTATATTTT
Found at i:69066104 original size:24 final size:22
Alignment explanation
Indices: 69066062--69066109 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
69066052 TATATCATTT
* *
69066062 TTATTATTTTATACTTTATCTA
1 TTATTATTTTATACATTATATA
69066084 TTATATATTTTATATCATTATATA
1 TTAT-TATTTTATA-CATTATATA
69066108 TT
1 TT
69066110 TTGTTTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 4 0.18
23 9 0.41
24 9 0.41
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (22 bp):
TTATTATTTTATACATTATATA
Found at i:69066105 original size:17 final size:16
Alignment explanation
Indices: 69065930--69066111 Score: 74
Period size: 16 Copynumber: 11.1 Consensus size: 16
69065920 ATAAATTTTA
* *
69065930 TTATATGTTATATTTT
1 TTATATATTATATATT
*
69065946 TAATATATATTATTTATT
1 T--TATATATTATATATT
* *
69065964 CTAT-TATGTTTATATT
1 TTATATAT-TATATATT
69065980 TTATTATATGTTATATATT
1 TTA-TATA--TTATATATT
69065999 TT-TACTA-TATATATT
1 TTATA-TATTATATATT
* * *
69066014 ATTATTTATTTTACCATAT
1 -TTATATATTATA-TAT-T
* * *
69066033 TTATATGTAAAATA-T
1 TTATATATTATATATT
69066048 TTAT-TA-TATCAT-TT
1 TTATATATTAT-ATATT
* *
69066062 TTAT-TATTTTATACT
1 TTATATATTATATATT
*
69066077 TTATCTATTATATATT
1 TTATATATTATATATT
69066093 TTATATCATTATATATT
1 TTATAT-ATTATATATT
69066110 TT
1 TT
69066112 GTTTATAAAT
Statistics
Matches: 122, Mismatches: 25, Indels: 37
0.66 0.14 0.20
Matches are distributed among these distances:
13 1 0.01
14 12 0.10
15 23 0.19
16 30 0.25
17 20 0.16
18 25 0.20
19 10 0.08
20 1 0.01
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (16 bp):
TTATATATTATATATT
Found at i:69066772 original size:31 final size:31
Alignment explanation
Indices: 69066734--69066797 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
69066724 CCTTTTCTTA
69066734 TTTCATATTTCATATCACTGGGCCGAAGCCT
1 TTTCATATTTCATATCACTGGGCCGAAGCCT
*
69066765 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATCACTGGGCCGAAGCCT
69066796 TT
1 TT
69066798 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATCACTGGGCCGAAGCCT
Found at i:69067042 original size:23 final size:24
Alignment explanation
Indices: 69067005--69067061 Score: 89
Period size: 23 Copynumber: 2.4 Consensus size: 24
69066995 CTGGAGGTCT
*
69067005 AGCCTCTTTTTATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
69067029 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
69067053 AGCCCTTTT
1 AGCCCTTTT
69067062 TCACTTCCTC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 17 0.55
24 14 0.45
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:69067136 original size:20 final size:20
Alignment explanation
Indices: 69067111--69067177 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
69067101 TTATGATTAC
69067111 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
69067131 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
69067151 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
69067171 ACCATGT
1 ATCATGT
69067178 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:69067142 original size:11 final size:11
Alignment explanation
Indices: 69067111--69067166 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
69067101 TTATGATTAC
69067111 ATCATGTGCAT
1 ATCATGTGCAT
*
69067122 ATCA--TACAT
1 ATCATGTGCAT
69067131 ATCATGTGCAT
1 ATCATGTGCAT
*
69067142 ATCA--TACAT
1 ATCATGTGCAT
*
69067151 GTCATGTGCAT
1 ATCATGTGCAT
69067162 ATCAT
1 ATCAT
69067167 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:69067260 original size:25 final size:25
Alignment explanation
Indices: 69067214--69067261 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
69067204 ATACATAAAC
* * * *
69067214 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
69067239 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69067262 CATGTTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:69073509 original size:37 final size:37
Alignment explanation
Indices: 69073450--69073632 Score: 321
Period size: 37 Copynumber: 4.9 Consensus size: 37
69073440 AGCTCAGACG
* *
69073450 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
*
69073487 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
69073524 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
*
69073561 AAATATCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
*
69073598 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGA
69073633 ATATATTTCC
Statistics
Matches: 139, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 139 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
Found at i:69073903 original size:47 final size:47
Alignment explanation
Indices: 69073841--69074084 Score: 335
Period size: 47 Copynumber: 5.1 Consensus size: 47
69073831 ACACGTTTCG
* * *
69073841 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
69073888 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
69073935 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
**
69073982 CATTGGCCATTCGGCCTTATCACGCATATATATATATAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATGCAT--GTTCACATTCATCA
* * *
69074035 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
69074082 CAT
1 CAT
69074085 AAAATCCTAA
Statistics
Matches: 175, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
47 125 0.71
49 7 0.04
51 7 0.04
53 36 0.21
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:69073952 original size:94 final size:97
Alignment explanation
Indices: 69073841--69074084 Score: 359
Period size: 100 Copynumber: 2.5 Consensus size: 97
69073831 ACACGTTTCG
* * * **
69073841 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
69073906 AT-CTC-ATATATGCAT-GTTCACATTCATCA
66 ATACGCAATATATACATAGTTCACATTCATCA
69073935 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
69074000 ATCACGCATATATATATATAGGTTCACATTCATCA
66 AT-ACGCA-ATATATACATA-GTTCACATTCATCA
*
69074035 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
69074085 AAAATCCTAA
Statistics
Matches: 135, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
94 62 0.46
96 2 0.01
98 8 0.06
100 63 0.47
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (97 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATACGCAATATATACATAGTTCACATTCATCA
Found at i:69077613 original size:57 final size:58
Alignment explanation
Indices: 69077544--69077654 Score: 161
Period size: 57 Copynumber: 1.9 Consensus size: 58
69077534 GTGCCCACTG
** *
69077544 ATCGATCTCGCACACATAGTGCTTGGTT-GAAGAACTCGCACACACAGTGCCTCAATT
1 ATCGATCTCGCACACATAGTGCTCAGTTAAAAGAACTCGCACACACAGTGCCTCAATT
* * *
69077601 ATCGATTTCGCACACATAGTGCTCAGTTAAAAGAATTTGCACACACAGTGCCTC
1 ATCGATCTCGCACACATAGTGCTCAGTTAAAAGAACTCGCACACACAGTGCCTC
69077655 TAATCATTCG
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 25 0.53
58 22 0.47
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (58 bp):
ATCGATCTCGCACACATAGTGCTCAGTTAAAAGAACTCGCACACACAGTGCCTCAATT
Found at i:69077615 original size:29 final size:31
Alignment explanation
Indices: 69077579--69077654 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 31
69077569 GTTGAAGAAC
**
69077579 TCGCACACACAGTGCCTCAATT-ATCG-ATT
1 TCGCACACACAGTGCCTCAATTAAAAGAATT
* *
69077608 TCGCACACATAGTG-CTCAGTTAAAAGAATT
1 TCGCACACACAGTGCCTCAATTAAAAGAATT
69077638 T-GCACACACAGTGCCTC
1 TCGCACACACAGTGCCTC
69077655 TAATCATTCG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.15
29 26 0.67
30 7 0.18
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (31 bp):
TCGCACACACAGTGCCTCAATTAAAAGAATT
Found at i:69077898 original size:40 final size:40
Alignment explanation
Indices: 69077866--69078977 Score: 1909
Period size: 40 Copynumber: 27.8 Consensus size: 40
69077856 CCAGCATGAT
* * *
69077866 TGCTCCTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
69077906 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * * *
69077946 TGCTCTTTGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
69077986 TGCTCCTCGGGACTTAGCCCAGATATATCACTAGCAAGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
69078026 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078066 TGCTCCTCGAGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078106 TGCTCCTCGGGACTTAGCCCGGATATACCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
69078146 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
69078186 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078226 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078266 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078306 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078346 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078386 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078426 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078466 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078506 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078546 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078586 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
69078626 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
69078666 TGCTCCTCGGGACTTAGCCCAGATATATCACTAGCAAGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
69078706 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078746 TGCTCCTCGAGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078786 TGCTCCTCGGGACTTAGCCCGGATATACCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
69078826 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078866 TGCTCCTCGGGACTTAGCCCAGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
69078906 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
69078946 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCCTCGGGACTTAGCCCGGATATATCACT
69078978 CTCAATTCTC
Statistics
Matches: 1030, Mismatches: 42, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 1030 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:69080595 original size:47 final size:47
Alignment explanation
Indices: 69080533--69081005 Score: 847
Period size: 47 Copynumber: 10.1 Consensus size: 47
69080523 ACACGTTTCG
* * ** **
69080533 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
* **
69080580 CATTGGCCATTCGGCCTTATCTCATATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
69080627 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
69080674 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
69080721 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
69080768 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
69080815 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
69080862 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
69080909 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
* *
69080956 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
69081003 CAT
1 CAT
69081006 AAAATCCTAA
Statistics
Matches: 416, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 416 1.00
ACGTcount: A:0.24, C:0.32, G:0.14, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACGCATACGCATGTTCACATTCATCA
Found at i:69085575 original size:158 final size:158
Alignment explanation
Indices: 69085296--69085606 Score: 444
Period size: 158 Copynumber: 2.0 Consensus size: 158
69085286 CCATCATCCT
* * * **
69085296 TTTTTTTTTCTTATCTGAAGATGTGAAACCATCTTGGTTTGGCTTTGGCAGTTGTGATTGTGTAA
1 TTTTTTTTTCTTATCTGAAAATATGAAACCATCTTGGTTTGGCTTCGGCAGTTGCAATTGTGTAA
* *
69085361 ATGAGACATCCATCTCATCCAAGGAAACATCATATTCGCATCCACGGTAATGGTTTC-TTTCTTC
66 ATGAAACATCCATCTCATCCAAGGAAACATCATATTCGCATCCAAGGTAATGGTTTCATTT-TTC
69085425 AAGATTATTTGCAATAGCTACATCAACAA
130 AAGATTATTTGCAATAGCTACATCAACAA
* * * * *
69085454 TTTTTTTTTCTTCTTTGAAAATATGGAACCATCTTGGTTTGGCTTCGGCGGTTGCAATTGTGTAG
1 TTTTTTTTTCTTATCTGAAAATATGAAACCATCTTGGTTTGGCTTCGGCAGTTGCAATTGTGTAA
* * * *
69085519 TTGAAACATCCATCTCATCCAAGGAAACATCATCTTTGCATCCAAGGTAATTGTTTCATTTTTCA
66 ATGAAACATCCATCTCATCCAAGGAAACATCATATTCGCATCCAAGGTAATGGTTTCATTTTTCA
**
69085584 AGATTATTTGCTGTAGCTACATC
131 AGATTATTTGCAATAGCTACATC
69085607 CTCAACATCT
Statistics
Matches: 134, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
158 131 0.98
159 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (158 bp):
TTTTTTTTTCTTATCTGAAAATATGAAACCATCTTGGTTTGGCTTCGGCAGTTGCAATTGTGTAA
ATGAAACATCCATCTCATCCAAGGAAACATCATATTCGCATCCAAGGTAATGGTTTCATTTTTCA
AGATTATTTGCAATAGCTACATCAACAA
Found at i:69088291 original size:18 final size:18
Alignment explanation
Indices: 69088268--69088302 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
69088258 ACAAATAGAG
69088268 GACATTATAATTTTTGAA
1 GACATTATAATTTTTGAA
69088286 GACATTATAATTTTTGA
1 GACATTATAATTTTTGA
69088303 GGTAGTAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.46
Consensus pattern (18 bp):
GACATTATAATTTTTGAA
Found at i:69091292 original size:6 final size:6
Alignment explanation
Indices: 69091254--69091283 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
69091244 TTCATATTTG
69091254 ATAAAT -TAAAT ATAAAT ATAAAT ATAAAT A
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT A
69091284 ATTATAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
ATAAAT
Found at i:69109825 original size:48 final size:47
Alignment explanation
Indices: 69109695--69110147 Score: 383
Period size: 48 Copynumber: 9.4 Consensus size: 47
69109685 TTTAGGTGAA
* * * * * * *
69109695 ATGCCGATGTCATGTTCCAAACATGGTCTTACATTGGCTCACATGTC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC
* *
69109742 GAAATGCTGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-
1 ---ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATC
* * * * *
69109792 GTGACCGATGCTATGCCCCAAACATGGTCTTACACTAG-TGCACATATC
1 ATG-CCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-CTCATATC
* *
69109840 AATGCTGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-
1 -ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATC
* * * * *
69109888 GTGACCGATGCTATGCCCCAAACATGGTCTTACACTAG-TGCACATATC
1 ATG-CCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-CTCATATC
* * * *
69109936 AATGCTGACGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATC
1 -ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC
* * * * *
69109984 AATGCCGATGCCATGTCCCAGACATGGTCCTATACTGGCTCTCACAAC
1 -ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC
* * * * *
69110032 ATCGCTGATGTCATGTTCCAAACATGGTCTTACACTGGCTCTCATATC
1 AT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC
* * *
69110080 GTGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATC
1 AT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC
**
69110128 AATGTTGATGCCATGTCCCA
1 -ATGCCGATGCCATGTCCCA
69110148 TCATTAGTTA
Statistics
Matches: 323, Mismatches: 66, Indels: 30
0.77 0.16 0.07
Matches are distributed among these distances:
47 12 0.04
48 266 0.82
49 8 0.02
50 36 0.11
51 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (47 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC
Found at i:69109867 original size:96 final size:96
Alignment explanation
Indices: 69109711--69110147 Score: 519
Period size: 96 Copynumber: 4.5 Consensus size: 96
69109701 ATGTCATGTT
* * *
69109711 CCAAACATGGTCTTACATTGGCT-CACATGTCGAAATGCTGACGCCATGTCCCAGACATGGTCTT
1 CCAAACATGGTCTTACACTAG-TGCACATATC--AATGCTGACGCCATGTCCCAGACATGGTCTT
*
69109775 ACACTAGCTCTCATAAT-GTGACCGATGCTATGCC
63 ACACTAGCTCTCAT-ATCGTGACCGATGCCATGCC
69109809 CCAAACATGGTCTTACACTAGTGCACATATCAATGCTGACGCCATGTCCCAGACATGGTCTTACA
1 CCAAACATGGTCTTACACTAGTGCACATATCAATGCTGACGCCATGTCCCAGACATGGTCTTACA
*
69109874 CTAGCTCTCATAAT-GTGACCGATGCTATGCC
66 CTAGCTCTCAT-ATCGTGACCGATGCCATGCC
69109905 CCAAACATGGTCTTACACTAGTGCACATATCAATGCTGACGCCATGTCCCAGACATGGTCTTACA
1 CCAAACATGGTCTTACACTAGTGCACATATCAATGCTGACGCCATGTCCCAGACATGGTCTTACA
* * * *
69109970 CTAGCGCACATATCAATG-CCGATGCCATGTC
66 CTAGCTCTCATATC-GTGACCGATGCCATGCC
* * * * * * * * *
69110001 CCAGACATGGTCCTATACTGGCTCTCACA-A-C-ATCGCTGATGTCATGTTCCAAACATGGTCTT
1 CCAAACATGGTCTTACACTAG-T-GCACATATCAAT-GCTGACGCCATGTCCCAGACATGGTCTT
* * *
69110063 ACACTGGCTCTCATATCGTGGCCGATGCCATGTC
63 ACACTAGCTCTCATATCGTGACCGATGCCATGCC
* * * *
69110097 CCAGACATGGTCTTACACTAGCGCACATATCAATGTTGATGCCATGTCCCA
1 CCAAACATGGTCTTACACTAGTGCACATATCAATGCTGACGCCATGTCCCA
69110148 TCATTAGTTA
Statistics
Matches: 300, Mismatches: 29, Indels: 22
0.85 0.08 0.06
Matches are distributed among these distances:
94 4 0.01
95 7 0.02
96 252 0.84
97 7 0.02
98 30 0.10
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (96 bp):
CCAAACATGGTCTTACACTAGTGCACATATCAATGCTGACGCCATGTCCCAGACATGGTCTTACA
CTAGCTCTCATATCGTGACCGATGCCATGCC
Found at i:69109967 original size:144 final size:144
Alignment explanation
Indices: 69109755--69110147 Score: 465
Period size: 144 Copynumber: 2.7 Consensus size: 144
69109745 ATGCTGACGC
* * * * * * *
69109755 CATGTCCCAGACATGGTCTTACACTAGCTCTCATA--ATGTGACCGATGCTATGCCCCAAACATG
1 CATGCCCCAAACATGGTCTTACACTAGCTCACATATCATG-G-CCGACGCCATGTCCCAGACATG
* * *
69109818 GTCTTACACTAGTGCACATATCAATGCTGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTC
64 GTCTTACACTAGCGCACATATCAATGCTGATGCCATGTCCCAGACATGGTCCTACACTAGCTCTC
* **
69109883 ATAATGT-GACCGATG-
129 ACAACATCG-CCGATGT
*
69109898 CTATGCCCCAAACATGGTCTTACACTAG-TGCACATATCAAT-GCTGACGCCATGTCCCAGACAT
1 C-ATGCCCCAAACATGGTCTTACACTAGCT-CACATATC-ATGGCCGACGCCATGTCCCAGACAT
* * *
69109961 GGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCAGACATGGTCCTATACTGGCTCT
63 GGTCTTACACTAGCGCACATATCAATGCTGATGCCATGTCCCAGACATGGTCCTACACTAGCTCT
*
69110026 CACAACATCGCTGATGT
128 CACAACATCGCCGATGT
** * * * *
69110043 CATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAGACATGGT
1 CATGCCCCAAACATGGTCTTACACTAGCTCACATATCATGGCCGACGCCATGTCCCAGACATGGT
*
69110108 CTTACACTAGCGCACATATCAATGTTGATGCCATGTCCCA
66 CTTACACTAGCGCACATATCAATGCTGATGCCATGTCCCA
69110148 TCATTAGTTA
Statistics
Matches: 214, Mismatches: 27, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
143 3 0.01
144 205 0.96
145 4 0.02
147 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (144 bp):
CATGCCCCAAACATGGTCTTACACTAGCTCACATATCATGGCCGACGCCATGTCCCAGACATGGT
CTTACACTAGCGCACATATCAATGCTGATGCCATGTCCCAGACATGGTCCTACACTAGCTCTCAC
AACATCGCCGATGT
Found at i:69111854 original size:145 final size:144
Alignment explanation
Indices: 69111592--69111877 Score: 500
Period size: 145 Copynumber: 2.0 Consensus size: 144
69111582 TCGATCAACT
*
69111592 ATGACCTAAACAACATCTTTCTTTCTGAGTGAAACGACAATCACATCACAAAATCCATGGTAATA
1 ATGACCCAAACAACATCTTTCTTTCTGAGTGAAACGACAATCACATCACAAAATCCATGGTAATA
* *
69111657 CGATCCTATCTCCATTCAGGAACCATTACAGGCTAAAGTAAACCTGAAGGTACTTGGTGCTCGGC
66 CGATCCTATCTCCATTCAGGAACCATCACAGGCTAAAGTAAACCTGAAGGTACTTGGTGCTCGAC
69111722 GTTCACTTGTTGAC
131 GTTCACTTGTTGAC
*
69111736 ATGACCCAAACAACATCTTTCTTTCTGAGTGACAACGACAATCCCATCACAAAATCCATGGTAAT
1 ATGACCCAAACAACATCTTTCTTTCTGAGTGA-AACGACAATCACATCACAAAATCCATGGTAAT
* *
69111801 ACGATCCTATCTCCATTCAGGAACCATCATAGGCTGAAGTAAACCTGAAGGTACTTGGTGCTCGA
65 ACGATCCTATCTCCATTCAGGAACCATCACAGGCTAAAGTAAACCTGAAGGTACTTGGTGCTCGA
*
69111866 CTTTCACTTGTT
130 CGTTCACTTGTT
69111878 ACCAAATTCA
Statistics
Matches: 134, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
144 31 0.23
145 103 0.77
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (144 bp):
ATGACCCAAACAACATCTTTCTTTCTGAGTGAAACGACAATCACATCACAAAATCCATGGTAATA
CGATCCTATCTCCATTCAGGAACCATCACAGGCTAAAGTAAACCTGAAGGTACTTGGTGCTCGAC
GTTCACTTGTTGAC
Found at i:69114806 original size:51 final size:51
Alignment explanation
Indices: 69114725--69114826 Score: 186
Period size: 51 Copynumber: 2.0 Consensus size: 51
69114715 ACGAACTCAC
*
69114725 GCTCATACTCTGTTATAGTCATTCGACCTTTCTTCAATTTTAGAAATTCTT
1 GCTCATACTCTGTTACAGTCATTCGACCTTTCTTCAATTTTAGAAATTCTT
*
69114776 GCTCATACTCTGTTACAGTCATTCGGCCTTTCTTCAATTTTAGAAATTCTT
1 GCTCATACTCTGTTACAGTCATTCGACCTTTCTTCAATTTTAGAAATTCTT
69114827 TCCTCTTCTG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.44
Consensus pattern (51 bp):
GCTCATACTCTGTTACAGTCATTCGACCTTTCTTCAATTTTAGAAATTCTT
Found at i:69121159 original size:48 final size:48
Alignment explanation
Indices: 69121102--69121522 Score: 815
Period size: 48 Copynumber: 8.8 Consensus size: 48
69121092 TGTTACAACA
69121102 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
69121150 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
69121198 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
69121246 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
69121294 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
69121342 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
69121390 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
69121438 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
69121486 TTCACATTAGCCATTCGGCTTCACCACACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
69121523 ATTTATCTTG
Statistics
Matches: 370, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 370 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:69128492 original size:67 final size:64
Alignment explanation
Indices: 69128352--69128535 Score: 185
Period size: 64 Copynumber: 2.8 Consensus size: 64
69128342 ATATAGTTCG
* * * * * * *
69128352 GCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACAT-AGAACCACCCATGCGACCTAGCTACATATACCCCGT
69128414 A
64 A
* * *
69128415 GCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACGCATGCGACCTAGCTACATATACCCCG
1 GCTCTCTTGTCTACATGGTG---TACACATAGAACCACCCATGCGACCTAGCTACATATACCCCG
69128480 TA
63 TA
* * *
69128482 GCTCTTTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACAT
69128536 CATAATGTCT
Statistics
Matches: 100, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 29 0.29
66 23 0.23
67 29 0.29
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATATACCCCGTA
Found at i:69129305 original size:30 final size:30
Alignment explanation
Indices: 69129271--69129331 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
69129261 TCATTAACTC
69129271 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
69129301 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
69129331 A
1 A
69129332 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:69131663 original size:77 final size:77
Alignment explanation
Indices: 69131536--69131690 Score: 310
Period size: 77 Copynumber: 2.0 Consensus size: 77
69131526 CTAGGGTTTT
69131536 TCAAGCTTCCAAGCTCGATTGTAAGTCCATTTTAGCCCCGTTTTTAATGTTATTTACGTTTTTGG
1 TCAAGCTTCCAAGCTCGATTGTAAGTCCATTTTAGCCCCGTTTTTAATGTTATTTACGTTTTTGG
69131601 AGTCCCGATAAC
66 AGTCCCGATAAC
69131613 TCAAGCTTCCAAGCTCGATTGTAAGTCCATTTTAGCCCCGTTTTTAATGTTATTTACGTTTTTGG
1 TCAAGCTTCCAAGCTCGATTGTAAGTCCATTTTAGCCCCGTTTTTAATGTTATTTACGTTTTTGG
69131678 AGTCCCGATAAC
66 AGTCCCGATAAC
69131690 T
1 T
69131691 TGATTAAGCT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (77 bp):
TCAAGCTTCCAAGCTCGATTGTAAGTCCATTTTAGCCCCGTTTTTAATGTTATTTACGTTTTTGG
AGTCCCGATAAC
Found at i:69135264 original size:48 final size:48
Alignment explanation
Indices: 69135208--69135461 Score: 262
Period size: 48 Copynumber: 5.3 Consensus size: 48
69135198 GTGAATTGCT
* * * * *
69135208 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAGGCC
* * *
69135256 GATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCATAAT-GTGACC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCGAGGCC
* * * *
69135304 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAAC-ATCGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGA-GGCC
* * * *
69135352 GATGCCATGTTCCAAACACT-GTCTTACACTGGCTCTCATATCGTGGCC
1 GATGCCATGTCCCAGACA-TGGTCTTACACTAGCTCTCATATCGAGGCC
* * ** * *
69135400 GATGCCATGTCCCAGACATAGTCTTACACTAGCGCAAATATCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAGGCC
69135448 GATGCCATGTCCCA
1 GATGCCATGTCCCA
69135462 TCATTAGTTG
Statistics
Matches: 168, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
47 2 0.01
48 164 0.98
49 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAGGCC
Found at i:69135452 original size:96 final size:95
Alignment explanation
Indices: 69135208--69135461 Score: 296
Period size: 96 Copynumber: 2.6 Consensus size: 95
69135198 GTGAATTGCT
* * * * * * *
69135208 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAGAT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC-ATGCCGATGCCATGTCCCAAAC
69135273 ATGGTCTTACACTAGCTCTCATAATGTGACC
65 ATGGTCTTACACTAGCTCTCATAATGTGACC
* * * * *
69135304 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAACATCGCTGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAT-GCCGATGCCATGTCCCAAAC
* *
69135369 ACT-GTCTTACACTGGCTCTCAT-ATCGTGGCC
65 A-TGGTCTTACACTAGCTCTCATAAT-GTGACC
* * *
69135400 GATGCCATGTCCCAGACATAGTCTTACACTAGCGCAAATATCAATGCCGATGCCATGTCCCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC-ATGCCGATGCCATGTCCCA
69135462 TCATTAGTTG
Statistics
Matches: 132, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
95 3 0.02
96 126 0.95
97 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (95 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCATGCCGATGCCATGTCCCAAACA
TGGTCTTACACTAGCTCTCATAATGTGACC
Found at i:69137462 original size:88 final size:88
Alignment explanation
Indices: 69137289--69137730 Score: 208
Period size: 88 Copynumber: 5.2 Consensus size: 88
69137279 TTTTGTTCCC
* * * *
69137289 AAATTAAAAGTAAATAAAATTCATTTCGAGATTTATTCTCGCCGTTCAACGGATTTTATTTCATA
1 AAATTAAAAGTAAATAAAATTCATTTCGAGATTGATTCTCACCGTTCAACGGATTTTATTCCAAA
*
69137354 TTTTGATTTTAGTTCCAAAAAGG
66 TTTTGATTTTAGTTCAAAAAAGG
* *
69137377 AAATT-AAAGATAAATAAAATTCAATTT-GGGATTGATTC-CTACCGTTCAA-TGATTTTATTCC
1 AAATTAAAAG-TAAATAAAATTC-ATTTCGAGATTGATTCTC-ACCGTTCAACGGATTTTATTCC
* *
69137438 AAATTTT-ATTTTATTTTCGAAAAA--
63 AAATTTTGATTTTA-GTTCAAAAAAGG
* * * * *
69137462 AAAGT---A--AAATAAAATCCGTTTC-AGTATTGATTC-CTGCCGTTCAAC-GATTTTATTCTA
1 AAATTAAAAGTAAATAAAATTCATTTCGAG-ATTGATTCTC-ACCGTTCAACGGATTTTATTCCA
* *
69137519 AATTTTG-TTTTA-TTGCCAAAAATG
64 AATTTTGATTTTAGTT-CAAAAAAGG
* * * * *
69137543 --AGT---A--AAATAAAATTCGTTTCGGGATTGATTCCCGCCGTTCAAC-GATTTTATTCC-AA
1 AAATTAAAAGTAAATAAAATTCATTTCGAGATTGATTCTCACCGTTCAACGGATTTTATTCCAAA
* * * **
69137599 TTTTTATTTTATTTCCAAAATCG
66 TTTTGATTTTAGTTCAAAAAAGG
* ** * * * * * *
69137622 AGTATT-AAAGCTAAATTAAAATTTGTTTCGGGATTTATTCCCGCCATTCAATGGA-TTTATT--
1 A-AATTAAAAG-TAAA-TAAAATTCATTTCGAGATTGATTCTCACCGTTCAACGGATTTTATTCC
* *
69137683 ACATTTTGATTTT-GTTGCCAAAAACGAG
63 AAATTTTGATTTTAGTT--CAAAAAAG-G
*
69137711 AAATTAAAATTAAATAAAAT
1 AAATTAAAAGTAAATAAAAT
69137731 CTATTTTGGG
Statistics
Matches: 290, Mismatches: 34, Indels: 61
0.75 0.09 0.16
Matches are distributed among these distances:
78 8 0.03
79 69 0.24
80 54 0.19
82 2 0.01
83 1 0.00
84 1 0.00
85 4 0.01
86 8 0.03
87 48 0.17
88 84 0.29
89 11 0.04
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (88 bp):
AAATTAAAAGTAAATAAAATTCATTTCGAGATTGATTCTCACCGTTCAACGGATTTTATTCCAAA
TTTTGATTTTAGTTCAAAAAAGG
Found at i:69137580 original size:79 final size:79
Alignment explanation
Indices: 69137388--69137618 Score: 311
Period size: 79 Copynumber: 2.9 Consensus size: 79
69137378 AATTAAAGAT
* * *
69137388 AAATAAAATTCAATTT-GGGATTGATTCCTACCGTTCAATGATTTTATTCCAAATTTTATTTTAT
1 AAATAAAATTC-GTTTCGGGATTGATTCCTGCCGTTCAACGATTTTATTCCAAATTTTATTTTA-
*
69137452 TTTCGAAAAAAAAGTA
64 TTTCCAAAAAAAAGTA
* * * * *
69137468 AAATAAAATCCGTTTCAGTATTGATTCCTGCCGTTCAACGATTTTATTCTAAATTTTGTTTTATT
1 AAATAAAATTCGTTTCGGGATTGATTCCTGCCGTTCAACGATTTTATTCCAAATTTTATTTTATT
* **
69137533 GCCAAAAATGAGTA
66 TCCAAAAAAAAGTA
* *
69137547 AAATAAAATTCGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAATTTTTATTTTATT
1 AAATAAAATTCGTTTCGGGATTGATTCCTGCCGTTCAACGATTTTATTCCAAATTTTATTTTATT
69137612 TCCAAAA
66 TCCAAAA
69137619 TCGAGTATTA
Statistics
Matches: 130, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
79 79 0.61
80 51 0.39
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (79 bp):
AAATAAAATTCGTTTCGGGATTGATTCCTGCCGTTCAACGATTTTATTCCAAATTTTATTTTATT
TCCAAAAAAAAGTA
Found at i:69137705 original size:87 final size:87
Alignment explanation
Indices: 69137579--69138095 Score: 641
Period size: 87 Copynumber: 6.0 Consensus size: 87
69137569 GATTCCCGCC
* * * * * * * **
69137579 GTTCAACGATTTTATTCCAATTTTTATTTTATTTCCAAAATCGAG-TATTAAAGCTAAATTAAAA
1 GTTCAACGAATTTATTAC-ATTTTGATTTTGTTGCCAAAAACGAGAAATTAAAATTAAA-TAAAA
* * * * * *
69137643 TTTGTTTCGGGATTTATTCCCGCC
64 TCTATTTTGGGATTTGTTCCTGCT
* * *
69137667 ATTCAATGGATTTATTACATTTTGATTTTGTTGCCAAAAACGAGAAATTAAAATTAAATAAAATC
1 GTTCAACGAATTTATTACATTTTGATTTTGTTGCCAAAAACGAGAAATTAAAATTAAATAAAATC
69137732 TATTTTGGGATTTGTTCCTGCT
66 TATTTTGGGATTTGTTCCTGCT
69137754 GTTCAACGAATTTATTACATTTTGATTTTGTTGCCAAAAACGAGAAATTAAAATTAAATAAAATC
1 GTTCAACGAATTTATTACATTTTGATTTTGTTGCCAAAAACGAGAAATTAAAATTAAATAAAATC
69137819 TATTTTGGGATTTGTTCCTGCT
66 TATTTTGGGATTTGTTCCTGCT
69137841 GTTCAACGAATTTATTACATTTTGATTTTGTTGCCAAAAACGAGAAATTAAAATTAAATAAAATC
1 GTTCAACGAATTTATTACATTTTGATTTTGTTGCCAAAAACGAGAAATTAAAATTAAATAAAATC
69137906 TATTTTGGGATTTGTTCCTGCT
66 TATTTTGGGATTTGTTCCTGCT
** *
69137928 GTTCAACGAATTTATTACATTTTGATTTTGTTGCCAAAAATAAGAAATTAAAATTAATTAAAATC
1 GTTCAACGAATTTATTACATTTTGATTTTGTTGCCAAAAACGAGAAATTAAAATTAAATAAAATC
* * ** *
69137993 TATTTAGGGATTTATTCCCCCC
66 TATTTTGGGATTTGTTCCTGCT
* ** ** **
69138015 GTTTAACAAGAATTTATTTGATTTT-ATTTTGTTTTC--AAATTAG-AATT-AAATTAAATAAAA
1 GTTCAAC--GAATTTATTACATTTTGATTTTGTTGCCAAAAACGAGAAATTAAAATTAAATAAAA
* *
69138075 TCTGTTTTGGGATTTATTCCT
64 TCTATTTTGGGATTTGTTCCT
69138096 ACCATTTTAC
Statistics
Matches: 387, Mismatches: 39, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
84 30 0.08
85 4 0.01
86 6 0.02
87 301 0.78
88 32 0.08
89 14 0.04
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (87 bp):
GTTCAACGAATTTATTACATTTTGATTTTGTTGCCAAAAACGAGAAATTAAAATTAAATAAAATC
TATTTTGGGATTTGTTCCTGCT
Found at i:69138128 original size:84 final size:85
Alignment explanation
Indices: 69137973--69138128 Score: 199
Period size: 84 Copynumber: 1.8 Consensus size: 85
69137963 AAAAATAAGA
* * * *
69137973 AATTAAAATTAATTAAAATCTATTTAGGGATTTATTCCCCCCGTTTAACAAGAATTTATTTGATT
1 AATTAAAATTAAATAAAATCTATTTAGGGATTTATTCCCACCATTTAACAAGAATTTATTTGATA
*
69138038 TTATTTTGTTTTCAAATTAG
66 TAATTTTGTTTTCAAATTAG
* * * * *
69138058 AATT-AAATTAAATAAAATCTGTTTTGGGATTTATTCCTACCATTTTAC-AGATTTTATTTTGAT
1 AATTAAAATTAAATAAAATCTATTTAGGGATTTATTCCCACCATTTAACAAGAATTTA-TTTGAT
69138121 ATAATTTT
65 ATAATTTT
69138129 ATTTCGAGAT
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
83 7 0.12
84 49 0.82
85 4 0.07
ACGTcount: A:0.34, C:0.10, G:0.09, T:0.47
Consensus pattern (85 bp):
AATTAAAATTAAATAAAATCTATTTAGGGATTTATTCCCACCATTTAACAAGAATTTATTTGATA
TAATTTTGTTTTCAAATTAG
Found at i:69145182 original size:18 final size:18
Alignment explanation
Indices: 69145159--69145193 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69145149 TTCAAGGTAA
* *
69145159 GAAAGTTTAGCCTCACAT
1 GAAAGTTAAACCTCACAT
69145177 GAAAGTTAAACCTCACA
1 GAAAGTTAAACCTCACA
69145194 AGCAAATAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.23, G:0.14, T:0.23
Consensus pattern (18 bp):
GAAAGTTAAACCTCACAT
Found at i:69156196 original size:25 final size:25
Alignment explanation
Indices: 69156168--69156216 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
69156158 TACAGCCTAT
* * *
69156168 CTATAGCAGTCTCAGTATATACTAC
1 CTATAACAATCTCAGGATATACTAC
*
69156193 CTATAACAATTTCAGGATATACTA
1 CTATAACAATCTCAGGATATACTA
69156217 TCAAAAACAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (25 bp):
CTATAACAATCTCAGGATATACTAC
Found at i:69156225 original size:25 final size:25
Alignment explanation
Indices: 69156179--69156232 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
69156169 TATAGCAGTC
* * *
69156179 TCAGTATATACTACCTATAACAATT
1 TCAGGATATACTACCAAAAACAATT
*
69156204 TCAGGATATACTATCAAAAACAATT
1 TCAGGATATACTACCAAAAACAATT
69156229 TCAG
1 TCAG
69156233 ATCAATTCAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (25 bp):
TCAGGATATACTACCAAAAACAATT
Found at i:69167496 original size:43 final size:42
Alignment explanation
Indices: 69167406--69167527 Score: 163
Period size: 43 Copynumber: 2.9 Consensus size: 42
69167396 TAGGGTTAGT
*
69167406 TGAGATTACGTGTAAGACCATATCTGGAATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* * *
69167448 TGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATA
** * *
69167491 TGAGATCCCATGTAAGACTATATCTGGGATATGGCAT
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCAT
69167528 TGGTATGGTA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
42 33 0.48
43 36 0.52
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:69168259 original size:15 final size:15
Alignment explanation
Indices: 69168231--69168264 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
69168221 GTAATTAATG
*
69168231 TGTGGATGACTTGGT
1 TGTGGATGAATTGGT
*
69168246 TGTGGTTGAATTGGT
1 TGTGGATGAATTGGT
69168261 TGTG
1 TGTG
69168265 TATATGCTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.41, T:0.44
Consensus pattern (15 bp):
TGTGGATGAATTGGT
Found at i:69169004 original size:19 final size:19
Alignment explanation
Indices: 69168976--69169014 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
69168966 CCGGTGACGA
69168976 ATACGGGT-AAGGGGTGTT
1 ATACGGGTAAAGGGGTGTT
69168994 ATACTGGGTAAAGGGGTGTT
1 ATAC-GGGTAAAGGGGTGTT
69169014 A
1 A
69169015 CAAAATCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.21
19 4 0.21
20 11 0.58
ACGTcount: A:0.26, C:0.05, G:0.41, T:0.28
Consensus pattern (19 bp):
ATACGGGTAAAGGGGTGTT
Found at i:69169823 original size:28 final size:28
Alignment explanation
Indices: 69169791--69169848 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
69169781 AGAAAAATAC
69169791 TAAATGCACAAACAAAGCTAAAATATGA
1 TAAATGCACAAACAAAGCTAAAATATGA
69169819 TAAATGCACAAACAAAGCTAAAATATGA
1 TAAATGCACAAACAAAGCTAAAATATGA
69169847 TA
1 TA
69169849 TTCCACTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.57, C:0.14, G:0.10, T:0.19
Consensus pattern (28 bp):
TAAATGCACAAACAAAGCTAAAATATGA
Found at i:69170176 original size:32 final size:32
Alignment explanation
Indices: 69170139--69170204 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
69170129 AAAGAGTATG
69170139 TACTACAAATATATCTAACATTTATATTCAAT
1 TACTACAAATATATCTAACATTTATATTCAAT
* *
69170171 TACTACAAATATTTCTAACATTTATATTTAAT
1 TACTACAAATATATCTAACATTTATATTCAAT
69170203 TA
1 TA
69170205 TGTACTCAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.44
Consensus pattern (32 bp):
TACTACAAATATATCTAACATTTATATTCAAT
Found at i:69170673 original size:23 final size:23
Alignment explanation
Indices: 69170647--69170692 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
69170637 ACTTTTTAAG
*
69170647 AATAAAAGACATATTTTGACATT
1 AATAAAAGACACATTTTGACATT
69170670 AATAAAAGACACATTTTGACATT
1 AATAAAAGACACATTTTGACATT
69170693 CTTGAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.48, C:0.11, G:0.09, T:0.33
Consensus pattern (23 bp):
AATAAAAGACACATTTTGACATT
Found at i:69175994 original size:14 final size:14
Alignment explanation
Indices: 69175975--69176002 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
69175965 CTACAACATG
69175975 TTAGGTATGAATAA
1 TTAGGTATGAATAA
69175989 TTAGGTATGAATAA
1 TTAGGTATGAATAA
69176003 GATATGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (14 bp):
TTAGGTATGAATAA
Found at i:69183201 original size:46 final size:46
Alignment explanation
Indices: 69183148--69183645 Score: 804
Period size: 46 Copynumber: 10.8 Consensus size: 46
69183138 TATTTGGGCA
*
69183148 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
69183194 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
69183240 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
69183286 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
69183332 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
69183378 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
69183424 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
* *
69183470 TCCGAACTCGTTGCGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
* * * * *
69183516 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATG---CGA-GCG
* * *
69183563 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
* * * *
69183609 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGG
69183646 GCGGGTTACA
Statistics
Matches: 429, Mismatches: 16, Indels: 14
0.93 0.03 0.03
Matches are distributed among these distances:
43 4 0.01
45 2 0.00
46 385 0.90
47 32 0.07
48 2 0.00
50 4 0.01
ACGTcount: A:0.18, C:0.23, G:0.31, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGCGTTCACTTATGGATGCGAGCG
Done.