Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 201 of 290
Found at i:69187816 original size:67 final size:64
Alignment explanation
Indices: 69187708--69187861 Score: 186
Period size: 67 Copynumber: 2.4 Consensus size: 64
69187698 AGCACTTAGT
* * * * *
69187708 ACCACCCATGTGACCTAGC--CAGTTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCT
1 ACCACCCATGCGACCTAGCTACA-TATATCCCGTAGCTCTCTTGTCTACATGGTGT--AT-ACAT
69187771 AGA
62 AGA
* *
69187774 ACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTATACATAGT
1 ACCACCCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTATACATAGA
*
69187838 ATCACCCATGCGACCTAGCTACAT
1 ACCACCCATGCGACCTAGCTACAT
69187862 CATAATGTCT
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
64 27 0.35
65 1 0.01
66 17 0.22
67 30 0.39
68 2 0.03
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.29
Consensus pattern (64 bp):
ACCACCCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTATACATAGA
Found at i:69189689 original size:13 final size:13
Alignment explanation
Indices: 69189673--69189697 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69189663 GTTCAACTAA
69189673 ATTAAAGAATTTG
1 ATTAAAGAATTTG
69189686 ATTAAAGAATTT
1 ATTAAAGAATTT
69189698 TCTTGAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (13 bp):
ATTAAAGAATTTG
Found at i:69194163 original size:26 final size:26
Alignment explanation
Indices: 69194109--69194165 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
69194099 TGCCAAAGGC
* *
69194109 AAAATCGTCAAAATTTTATTAGGGAT
1 AAAATCGTCAAAATTTTACTAGAGAT
*
69194135 AAAATCGTCAAAATTTTGCTAGA-AGT
1 AAAATCGTCAAAATTTTACTAGAGA-T
69194161 AAAAT
1 AAAAT
69194166 AGGGATGAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.46, C:0.09, G:0.14, T:0.32
Consensus pattern (26 bp):
AAAATCGTCAAAATTTTACTAGAGAT
Found at i:69202388 original size:80 final size:80
Alignment explanation
Indices: 69202270--69202900 Score: 1133
Period size: 80 Copynumber: 7.9 Consensus size: 80
69202260 TTTAGTTTAC
* * * *
69202270 TAAAATTACTGAAATACCC-CTAGTTGTAAAATTACCAAAGTACTCCCGATTTATAAAATTA-TC
1 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACT-
69202333 GAAATACCGTCGATTG
65 GAAATACCGTCGATTG
69202349 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTG
1 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTG
69202414 AAATACCGTCGATTG
66 AAATACCGTCGATTG
69202429 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTG
1 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTG
69202494 AAATACCGTCGATTG
66 AAATACCGTCGATTG
69202509 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTG
1 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTG
69202574 AAATACCGTCGATTG
66 AAATACCGTCGATTG
69202589 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTG
1 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTG
69202654 AAATACCGTCGATTG
66 AAATACCGTCGATTG
69202669 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTG
1 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTG
69202734 AAATACCGTCGATTG
66 AAATACCGTCGATTG
69202749 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTG
1 TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTG
69202814 AAATACCGTCGATTG
66 AAATACCGTCGATTG
* * * * * *
69202829 TAAAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAA-TACCCTCGATTTATAAAATTATT
1 TAAAATTACTGAAATACCCTCGACTTGTAAAATTAC-CAAAGTACCCCCGGTTTATAAAATTACT
69202893 GAAATACC
65 GAAATACC
69202901 CTTGTAGGGA
Statistics
Matches: 539, Mismatches: 10, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
79 19 0.04
80 516 0.96
81 4 0.01
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.29
Consensus pattern (80 bp):
TAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACTG
AAATACCGTCGATTG
Found at i:69202917 original size:54 final size:53
Alignment explanation
Indices: 69202324--69202902 Score: 293
Period size: 53 Copynumber: 10.8 Consensus size: 53
69202314 CCCGATTTAT
* * * * *
69202324 AAAATTA-TCGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCGACT-TGT
1 AAAATTACT-GAAATACCCTCGATTATAAAATTACTGAAATACCCTC-AATAGGG
* * * * * * *
69202377 AAAATTAC-CAAAGTACCCCCGGTTTATAAAATTACTGAAATACCGTCGAT-TGT
1 AAAATTACTGAAA-TACCCTC-GATTATAAAATTACTGAAATACCCTCAATAGGG
* * * ** ****
69202430 AAAATTACTGAAATACCCTCGACTTGTAAAATTAC-CAAAGTACCCCCGGTTTAT
1 AAAATTACTGAAATACCCTCGA-TTATAAAATTACTGAAA-TACCCTCAATAGGG
* * * * *
69202484 AAAATTACTGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCGACT-TGT
1 AAAATTACTGAAATACCCTCGATTATAAAATTACTGAAATACCCTC-AATAGGG
* * * * * * *
69202537 AAAATTAC-CAAAGTACCCCCGGTTTATAAAATTACTGAAATACCGTCGAT-TGT
1 AAAATTACTGAAA-TACCCTC-GATTATAAAATTACTGAAATACCCTCAATAGGG
* * * ** ****
69202590 AAAATTACTGAAATACCCTCGACTTGTAAAATTAC-CAAAGTACCCCCGGTTTAT
1 AAAATTACTGAAATACCCTCGA-TTATAAAATTACTGAAA-TACCCTCAATAGGG
* * * * *
69202644 AAAATTACTGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCGACT-TGT
1 AAAATTACTGAAATACCCTCGATTATAAAATTACTGAAATACCCTC-AATAGGG
* * * * * * *
69202697 AAAATTAC-CAAAGTACCCCCGGTTTATAAAATTACTGAAATACCGTCGAT-TGT
1 AAAATTACTGAAA-TACCCTC-GATTATAAAATTACTGAAATACCCTCAATAGGG
* * * ** ****
69202750 AAAATTACTGAAATACCCTCGACTTGTAAAATTAC-CAAAGTACCCCCGGTTTAT
1 AAAATTACTGAAATACCCTCGA-TTATAAAATTACTGAAA-TACCCTCAATAGGG
* * ** *
69202804 AAAATTACTGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCAATTTGT
1 AAAATTACTGAAATACCCTCGATTATAAAATTACTGAAATACCCTCAATAGGG
*
69202857 AAAATTACTGAAATACCCTCGATTTATAAAATTATTGAAATACCCT
1 AAAATTACTGAAATACCCTCGA-TTATAAAATTACTGAAATACCCT
69202903 TGTAGGGAAG
Statistics
Matches: 429, Mismatches: 72, Indels: 49
0.78 0.13 0.09
Matches are distributed among these distances:
52 21 0.05
53 229 0.53
54 179 0.42
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (53 bp):
AAAATTACTGAAATACCCTCGATTATAAAATTACTGAAATACCCTCAATAGGG
Found at i:69203883 original size:54 final size:54
Alignment explanation
Indices: 69202936--69203873 Score: 1462
Period size: 54 Copynumber: 17.4 Consensus size: 54
69202926 CCACTATAGA
* *** * * * **
69202936 GTAGAATTACCGAAATACTGTTGTAGGGTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
* * * * * * **
69202990 GTAGAATTACTAAAATACCCCTGTAGGGTACAATTGCTGAAATACCCATGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
69203044 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
69203098 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
69203152 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
69203206 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
69203260 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
69203314 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
69203368 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
69203422 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
69203476 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
69203530 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
69203584 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
69203638 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
* * * * ** * **
69203692 GTAGAAATACCGAAATACCCCTGTAGGGTAAAATTACTAAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
* * * * * * ** *
69203746 GTACAATTGCTGAAATACCCATGTAGGGTAGAATTACTGAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
* * ** * * * **
69203800 GTAGAATTACCGAAATAACTTTGTAGGGTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
* *
69203854 GTAAAATTACTGAGATACCC
1 GTAGAATTACTGAAATACCC
69203874 TTGTGGGGTA
Statistics
Matches: 837, Mismatches: 47, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 837 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (54 bp):
GTAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACTTTGTAGG
Found at i:69204370 original size:22 final size:22
Alignment explanation
Indices: 69204318--69204382 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
69204308 TTAAAGCCTT
* *
69204318 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
69204340 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
69204362 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
69204383 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:69204629 original size:27 final size:26
Alignment explanation
Indices: 69204541--69204642 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
69204531 ATTCTGTTAA
* * *
69204541 GTGGCTTTGCCACATTATCTCTTTCTG
1 GTGGCTCTGCCACAATATCT-GTTCTG
*
69204568 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
69204595 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* * *
69204622 GTGACTCTGTCATAATATCTG
1 GTGGCTCTGCCACAATATCTG
69204643 ATAACTGAGT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 9 0.14
27 51 0.77
28 6 0.09
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:69204819 original size:6 final size:6
Alignment explanation
Indices: 69204808--69204867 Score: 61
Period size: 6 Copynumber: 9.8 Consensus size: 6
69204798 TTACCTAATA
* *
69204808 CTGATT CTGATT CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT
69204857 CT-AGTT CTGAT
1 CTGA-TT CTGAT
69204868 AATGTTTCTT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 2 0.04
6 39 0.87
7 3 0.07
8 1 0.02
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:69204828 original size:31 final size:31
Alignment explanation
Indices: 69204779--69204858 Score: 124
Period size: 31 Copynumber: 2.5 Consensus size: 31
69204769 TTGCATTCAC
* *
69204779 ATTCTGATTTTTGATTCTGTTACCTAATACTG
1 ATTCTGA-TTCTGATTCTGTCACCTAATACTG
*
69204811 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
69204842 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
69204859 AGTTCTGATA
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
31 38 0.84
32 7 0.16
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:69206873 original size:27 final size:27
Alignment explanation
Indices: 69206836--69207380 Score: 493
Period size: 27 Copynumber: 20.4 Consensus size: 27
69206826 ATACCTCCAA
*
69206836 TTGTAAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAAGTACCCTCGAT
* * *
69206863 TTATAAAATTACCAAAATACCGTCGA-
1 TTGTAAAATTACCAAAGTACCCTCGAT
*
69206889 TTGTAAAATTACTGAAA-TACCCTCG-T
1 TTGTAAAATTAC-CAAAGTACCCTCGAT
*
69206915 CTTGTAAAATTACCAAAGTACCCCCGAT
1 -TTGTAAAATTACCAAAGTACCCTCGAT
* * *
69206943 TTATAAAATTACCAAAATACCGTCGA-
1 TTGTAAAATTACCAAAGTACCCTCGAT
*
69206969 TTGTAAAATTACTGAAA-TACCCTCG-T
1 TTGTAAAATTAC-CAAAGTACCCTCGAT
*
69206995 CTTGTAAAATTACCAAAGTACCCCCGAT
1 -TTGTAAAATTACCAAAGTACCCTCGAT
* * *
69207023 TTATAAAATTACCAAAATACCGTCGA-
1 TTGTAAAATTACCAAAGTACCCTCGAT
*
69207049 TTGTAAAATTACTGAAA-TACCCTCG-T
1 TTGTAAAATTAC-CAAAGTACCCTCGAT
*
69207075 CTTGTAAAATTACCAAAGTACCCCCGAT
1 -TTGTAAAATTACCAAAGTACCCTCGAT
* * *
69207103 TTATAAAATTACCAAAATACCGTCGA-
1 TTGTAAAATTACCAAAGTACCCTCGAT
*
69207129 TTGTAAAATTACTGAAA-TACCCTCG-T
1 TTGTAAAATTAC-CAAAGTACCCTCGAT
*
69207155 CTTGTAAAATTACCAAAGTACCCCCGAT
1 -TTGTAAAATTACCAAAGTACCCTCGAT
* * *
69207183 TTATAAAATTACCAAAATACCGTCGA-
1 TTGTAAAATTACCAAAGTACCCTCGAT
*
69207209 TTGTAAAATTACTGAAA-TACCCTCG-T
1 TTGTAAAATTAC-CAAAGTACCCTCGAT
*
69207235 CTTGTAAAATTACCAAAGTACCCCCGAT
1 -TTGTAAAATTACCAAAGTACCCTCGAT
* **
69207263 TTATAAAATTACCGAAA-TACTGTCGA-
1 TTGTAAAATTACC-AAAGTACCCTCGAT
* **
69207289 TTGTAAAATTACTGAAA-TACCCTTAAT
1 TTGTAAAATTAC-CAAAGTACCCTCGAT
69207316 TTGTAAAATTACCGAAA-TACCCTC-AGT
1 TTGTAAAATTACC-AAAGTACCCTCGA-T
* *
69207343 TTGCAAAATTACTGAAA-TACCCTCGAT
1 TTGTAAAATTAC-CAAAGTACCCTCGAT
*
69207370 TTATAAAATTA
1 TTGTAAAATTA
69207381 TTGAAATACC
Statistics
Matches: 425, Mismatches: 61, Indels: 64
0.77 0.11 0.12
Matches are distributed among these distances:
26 125 0.29
27 291 0.68
28 9 0.02
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAGTACCCTCGAT
Found at i:69206931 original size:80 final size:80
Alignment explanation
Indices: 69206813--69207392 Score: 961
Period size: 80 Copynumber: 7.2 Consensus size: 80
69206803 TTTAGTTTAC
***
69206813 TAAAATTACTGAAATA-CCTCCAATTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCA
1 TAAAATTACTGAAATACCCTCGTCTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCA
69206877 AAATACCGTCGATTG
66 AAATACCGTCGATTG
69206892 TAAAATTACTGAAATACCCTCGTCTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCA
1 TAAAATTACTGAAATACCCTCGTCTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCA
69206957 AAATACCGTCGATTG
66 AAATACCGTCGATTG
69206972 TAAAATTACTGAAATACCCTCGTCTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCA
1 TAAAATTACTGAAATACCCTCGTCTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCA
69207037 AAATACCGTCGATTG
66 AAATACCGTCGATTG
69207052 TAAAATTACTGAAATACCCTCGTCTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCA
1 TAAAATTACTGAAATACCCTCGTCTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCA
69207117 AAATACCGTCGATTG
66 AAATACCGTCGATTG
69207132 TAAAATTACTGAAATACCCTCGTCTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCA
1 TAAAATTACTGAAATACCCTCGTCTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCA
69207197 AAATACCGTCGATTG
66 AAATACCGTCGATTG
*
69207212 TAAAATTACTGAAATACCCTCGTCTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCG
1 TAAAATTACTGAAATACCCTCGTCTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCA
*
69207277 AAATACTGTCGATTG
66 AAATACCGTCGATTG
** * **
69207292 TAAAATTACTGAAATACCCTTAAT-TTGTAAAATTACCGAAA-TACCCTC-AGTTTGCAAAATTA
1 TAAAATTACTGAAATACCC-TCGTCTTGTAAAATTACC-AAAGTACCCCCGA-TTTATAAAATTA
** * *
69207354 CTGAAATACCCTCGATTTA
63 CCAAAATACCGTCGA-TTG
*
69207373 TAAAATTATTGAAATACCCT
1 TAAAATTACTGAAATACCCT
69207393 TGTAGGGTAG
Statistics
Matches: 481, Mismatches: 15, Indels: 9
0.95 0.03 0.02
Matches are distributed among these distances:
79 17 0.04
80 439 0.91
81 25 0.05
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (80 bp):
TAAAATTACTGAAATACCCTCGTCTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCA
AAATACCGTCGATTG
Found at i:69207406 original size:27 final size:27
Alignment explanation
Indices: 69207376--69207698 Score: 396
Period size: 27 Copynumber: 12.0 Consensus size: 27
69207366 CGATTTATAA
* *
69207376 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
69207403 AATTATTAAAATACCACTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
69207430 AATTA-TCGAAATACCGTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * * *
69207457 AAATACCGAAATACCCCTATAGAGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
69207484 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
69207511 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
69207538 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
69207565 AATTACTGAAATATCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
69207592 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
69207619 AATTACCGAAATAACCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
69207646 AATTACTAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
69207673 AATTACCGAGATACCCTTGTGGGGTA
1 AATTACTGAAATACCCCTGTAGGGTA
69207699 AAACTACCAT
Statistics
Matches: 254, Mismatches: 40, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
26 1 0.00
27 253 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:69207407 original size:54 final size:53
Alignment explanation
Indices: 69207212--69207689 Score: 206
Period size: 54 Copynumber: 8.9 Consensus size: 53
69207202 CCGTCGATTG
* *** * * *
69207212 TAAAATTACTGAAATACCCTCGTCTTGTAAAATTAC-CAAAGTACCCCCGATTTA
1 TAAAATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAA-TACCCTC-ATTTA
* ** * ** * * *
69207266 TAAAATTACCGAAATACTGTCG-ATTGTAAAATTACTGAAATACCCTTAATTTG
1 TAAAATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCC-TCATTTA
* * ** * *
69207319 TAAAATTACCGAAATACCCTCAGT-TTGCAAAATTACTGAAATACCCTCGATTTA
1 TAAAATTACTGAAATACCCT-TGTAGGGTAGAATTACTGAAATACCCTC-ATTTA
* * * ***
69207373 TAAAATTATTGAAATACCCTTGTAGGGTAGAATTATTAAAATACCACT-ATAGGG
1 TAAAATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACC-CTCAT-TTA
* * * * **
69207427 TAGAATTA-TCGAAATACCGTTGTAGGGTAGAAATACCGAAATACCC-CTATAGA
1 TAAAATTACT-GAAATACCCTTGTAGGGTAGAATTACTGAAATACCCTC-ATTTA
* * * * *
69207480 GTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACTAAAATACCC-C-TGTA
1 -TAAAATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCTCATTTA
* ***
69207532 GGGTAGAAA-TACTGAAATACCCCTGTAGGGTAGAATTACTGAAATATCCCT-ATAGGG
1 ---TA-AAATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATA-CCCTCAT-TTA
* * * * * *
69207589 TAGAATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATAACC-C-TGTA
1 TAAAATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCTCATTTA
* * * * * *
69207640 GGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAGATACCCT
1 ---TAAAATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCT
69207690 TGTGGGGTAA
Statistics
Matches: 340, Mismatches: 58, Indels: 51
0.76 0.13 0.11
Matches are distributed among these distances:
51 1 0.00
52 3 0.01
53 51 0.15
54 275 0.81
55 8 0.02
56 1 0.00
57 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (53 bp):
TAAAATTACTGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCTCATTTA
Found at i:69208185 original size:22 final size:22
Alignment explanation
Indices: 69208133--69208197 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
69208123 TTAAAGCCTT
* * *
69208133 CTGATTATGGCTTTATGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
69208155 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
69208177 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
69208198 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:69208417 original size:27 final size:26
Alignment explanation
Indices: 69208330--69208430 Score: 103
Period size: 27 Copynumber: 3.8 Consensus size: 26
69208320 CAGTTATCGA
* * * *
69208330 TGGCTTTGCCACATTATCTCTTTTTGG
1 TGGCTCTGCCACAATATCT-GTTCTGG
* *
69208357 TGGCTATGCCACAAATGTCTGTTCTGG
1 TGGCTCTGCCAC-AATATCTGTTCTGG
69208384 TGGCTCTGCCACAATATCTGTATCTGG
1 TGGCTCTGCCACAATATCTGT-TCTGG
* *
69208411 TGACTCTGTCACAATATCTG
1 TGGCTCTGCCACAATATCTG
69208431 ATAACTGAGC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.13
27 50 0.79
28 5 0.08
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (26 bp):
TGGCTCTGCCACAATATCTGTTCTGG
Found at i:69208605 original size:6 final size:6
Alignment explanation
Indices: 69208567--69208655 Score: 67
Period size: 6 Copynumber: 14.3 Consensus size: 6
69208557 ATGTATTCAC
* *
69208567 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
69208617 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
69208656 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 18
0.72 0.09 0.20
Matches are distributed among these distances:
5 4 0.06
6 49 0.74
7 11 0.17
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:69208616 original size:31 final size:31
Alignment explanation
Indices: 69208567--69208671 Score: 115
Period size: 31 Copynumber: 3.4 Consensus size: 31
69208557 ATGTATTCAC
*
69208567 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
* * *
69208599 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
69208630 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
69208660 TTTCTTATTCTG
1 ATTCTGATTCTG
69208672 GAATGGGTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
30 16 0.26
31 37 0.60
32 9 0.15
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:69212920 original size:19 final size:19
Alignment explanation
Indices: 69212896--69212933 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
69212886 CATTTATTTG
69212896 CAAAATCTTAGTACTACTA
1 CAAAATCTTAGTACTACTA
69212915 CAAAATCTTAGTACTACTA
1 CAAAATCTTAGTACTACTA
69212934 TTGTCTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.32
Consensus pattern (19 bp):
CAAAATCTTAGTACTACTA
Found at i:69213132 original size:77 final size:76
Alignment explanation
Indices: 69213033--69213187 Score: 204
Period size: 77 Copynumber: 2.0 Consensus size: 76
69213023 CTTTTTAACT
* * ** *
69213033 AAATAATGAAGAAATTATCACTTATTTATAAGATAAATTTGAG-ATATAGAAGTGTTCTCTGGTC
1 AAATAATGAAGAAATTAACACTTATTTATAAGATAAATATGAGCATAT-G-AGCATTCTCTGGAC
69213097 AATGAAGGATTAA
64 AATGAAGGATTAA
* *
69213110 AAATAATGAATAAATTAACACTTATTTATAAGGTAAATATGAGCATATGAGCATTCTCTGGACAA
1 AAATAATGAAGAAATTAACACTTATTTATAAGATAAATATGAGCATATGAGCATTCTCTGGACAA
**
69213175 TGTGGGATTAA
66 TGAAGGATTAA
69213186 AA
1 AA
69213188 TTAACTTTTT
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
76 24 0.35
77 40 0.59
78 4 0.06
ACGTcount: A:0.43, C:0.08, G:0.17, T:0.32
Consensus pattern (76 bp):
AAATAATGAAGAAATTAACACTTATTTATAAGATAAATATGAGCATATGAGCATTCTCTGGACAA
TGAAGGATTAA
Found at i:69213369 original size:93 final size:92
Alignment explanation
Indices: 69213243--69213490 Score: 286
Period size: 93 Copynumber: 2.7 Consensus size: 92
69213233 AGAAGTGAAC
* * * * *
69213243 TATGAAAATATTTTCTAGTCAATGTGGGTTTAAAATTAGCTTTTTAATGAAAATAGAGAAGAAAT
1 TATGAAAGTATTCTCTAGTCAATGTGAGATTAAAATTA-CTTTTTAATGAAAATAGTGAAGAAAT
*
69213308 TGTCACTTATTTATAAG-GTAAATGT-AG
65 TGACACTTATTTAT-AGCGTAAATGTGAG
* * *
69213335 ATATGAAAGTATTCTCTAATCAATGTGAGATTAAAATTATCGTTTTAATGAAAATAGTGAAGAAT
1 -TATGAAAGTATTCTCTAGTCAATGTGAGATTAAAATTA-CTTTTTAATGAAAATAGTGAAGAAA
*
69213400 TTGACACTTATTTATAGCGTAAGTGTGAG
64 TTGACACTTATTTATAGCGTAAATGTGAG
* * * * * *
69213429 TAT-AGGAGTGTTCTCTAGCCAATGTGAGATTAAAATTAATTTTTAATAAAAATTGTGAAGAA
1 TATGA-AAGTATTCTCTAGTCAATGTGAGATTAAAATTACTTTTTAATGAAAATAGTGAAGAA
69213491 GTGAGCTACG
Statistics
Matches: 133, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
92 23 0.17
93 108 0.81
94 2 0.02
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (92 bp):
TATGAAAGTATTCTCTAGTCAATGTGAGATTAAAATTACTTTTTAATGAAAATAGTGAAGAAATT
GACACTTATTTATAGCGTAAATGTGAG
Found at i:69213955 original size:20 final size:20
Alignment explanation
Indices: 69213930--69213968 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
69213920 ATTCTTTAGG
69213930 TAATCTGGGATTAAAATTAT
1 TAATCTGGGATTAAAATTAT
69213950 TAATCTGGGATTAAAATTA
1 TAATCTGGGATTAAAATTA
69213969 ACTTAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.38
Consensus pattern (20 bp):
TAATCTGGGATTAAAATTAT
Found at i:69215622 original size:17 final size:17
Alignment explanation
Indices: 69215593--69215625 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
69215583 AAAAAACTTC
69215593 TTTTAGAAGTTTCAAAA
1 TTTTAGAAGTTTCAAAA
69215610 TTTTA-AAGCTTTCAAA
1 TTTTAGAAG-TTTCAAA
69215626 GGAAACTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.42
Consensus pattern (17 bp):
TTTTAGAAGTTTCAAAA
Found at i:69221697 original size:35 final size:37
Alignment explanation
Indices: 69221626--69221723 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
69221616 ATAATCTTCA
69221626 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
69221664 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
69221699 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
69221724 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:69221723 original size:17 final size:19
Alignment explanation
Indices: 69221626--69221716 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
69221616 ATAATCTTCA
69221626 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
69221645 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
69221664 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
69221681 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
69221699 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
69221717 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:69221742 original size:22 final size:22
Alignment explanation
Indices: 69221626--69221739 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
69221616 ATAATCTTCA
69221626 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
69221645 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
69221664 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
69221681 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
69221699 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
69221721 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
69221740 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:69222031 original size:18 final size:17
Alignment explanation
Indices: 69222008--69222041 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
69221998 TTTCCCTAAT
*
69222008 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
69222026 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
69222042 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:69241438 original size:18 final size:18
Alignment explanation
Indices: 69241400--69241439 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
69241390 CTATTTAGCT
* **
69241400 ATATAGTTTTTAATTTTA
1 ATATAATTTTTAATTACA
69241418 ATATAATTTTTAATTACA
1 ATATAATTTTTAATTACA
69241436 ATAT
1 ATAT
69241440 TTATTATTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (18 bp):
ATATAATTTTTAATTACA
Found at i:69245252 original size:17 final size:17
Alignment explanation
Indices: 69245230--69245264 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
69245220 AATAAATTTT
69245230 CCTTCTCTCAATTATCC
1 CCTTCTCTCAATTATCC
69245247 CCTTCTCTCAATTATCC
1 CCTTCTCTCAATTATCC
69245264 C
1 C
69245265 ACGTTTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.43, G:0.00, T:0.40
Consensus pattern (17 bp):
CCTTCTCTCAATTATCC
Found at i:69257171 original size:5 final size:5
Alignment explanation
Indices: 69257161--69257190 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
69257151 GCAAATGGTT
69257161 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
69257191 AAGTACAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:69258177 original size:19 final size:18
Alignment explanation
Indices: 69258164--69258210 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 18
69258154 ATTTGTTTAT
69258164 TTTTTAAAATTTTGTATAA
1 TTTTT-AAATTTTGTATAA
*
69258183 TTTTTAAATTTTTTAATAAA
1 TTTTTAAATTTTGT-AT-AA
69258203 TTTTTAAA
1 TTTTTAAA
69258211 CTTTATCATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 8 0.32
19 7 0.28
20 10 0.40
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TTTTTAAATTTTGTATAA
Found at i:69258185 original size:20 final size:20
Alignment explanation
Indices: 69258164--69258210 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 20
69258154 ATTTGTTTAT
69258164 TTTTTAAAATTTTGT-ATAA
1 TTTTTAAAATTTTGTAATAA
*
69258183 TTTTT-AAATTTTTTAATAAA
1 TTTTTAAAATTTTGTAAT-AA
69258203 TTTTTAAA
1 TTTTTAAA
69258211 CTTTATCATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 8 0.33
19 7 0.29
20 7 0.29
21 2 0.08
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTTTAAAATTTTGTAATAA
Found at i:69259255 original size:19 final size:18
Alignment explanation
Indices: 69259242--69259288 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 18
69259232 ATTTGTTTAT
69259242 TTTTTAAAATTTTGTATAA
1 TTTTT-AAATTTTGTATAA
*
69259261 TTTTTAAATTTTTTAATAAA
1 TTTTTAAATTTTGT-AT-AA
69259281 TTTTTAAA
1 TTTTTAAA
69259289 CTTTATCATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 8 0.32
19 7 0.28
20 10 0.40
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TTTTTAAATTTTGTATAA
Found at i:69259263 original size:20 final size:20
Alignment explanation
Indices: 69259242--69259288 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 20
69259232 ATTTGTTTAT
69259242 TTTTTAAAATTTTGT-ATAA
1 TTTTTAAAATTTTGTAATAA
*
69259261 TTTTT-AAATTTTTTAATAAA
1 TTTTTAAAATTTTGTAAT-AA
69259281 TTTTTAAA
1 TTTTTAAA
69259289 CTTTATCATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 8 0.33
19 7 0.29
20 7 0.29
21 2 0.08
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTTTAAAATTTTGTAATAA
Found at i:69262734 original size:40 final size:40
Alignment explanation
Indices: 69262669--69262821 Score: 177
Period size: 40 Copynumber: 3.8 Consensus size: 40
69262659 GCATTAGTGG
* * *
69262669 AAGATCGAGAATTAGCGGCGCTTTCTGAAAAATGCCGCTA
1 AAGATCGAGCATTAGCGGCGCTTTCTAAAAAATACCGCTA
* * *
69262709 AAAATCAAGCATTAGCGGCGCTTTCTAAAAAACACCGCTA
1 AAGATCGAGCATTAGCGGCGCTTTCTAAAAAATACCGCTA
* *
69262749 AAGATCGAGCATTAGCGGCACTTT-TTAAAAATCACCGC-A
1 AAGATCGAGCATTAGCGGCGCTTTCTAAAAAAT-ACCGCTA
*
69262788 ATAGATCGAGCATTAGTGGCGCTTT-TCAAAAAAT
1 A-AGATCGAGCATTAGCGGCGCTTTCT-AAAAAAT
69262822 GCCACAAAAA
Statistics
Matches: 96, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
39 8 0.08
40 82 0.85
41 6 0.06
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (40 bp):
AAGATCGAGCATTAGCGGCGCTTTCTAAAAAATACCGCTA
Found at i:69263029 original size:21 final size:21
Alignment explanation
Indices: 69262994--69263038 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
69262984 TATTTTGTGA
**
69262994 TTAGAGTTTTGAGTTTAG-GGT
1 TTAGAGTTTAAAGTTT-GTGGT
69263015 TTAGAGTTTAAAGTTTGTGGT
1 TTAGAGTTTAAAGTTTGTGGT
69263036 TTA
1 TTA
69263039 AGGTTTATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (21 bp):
TTAGAGTTTAAAGTTTGTGGT
Found at i:69263247 original size:14 final size:14
Alignment explanation
Indices: 69263212--69263261 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
69263202 AATATATATT
* *
69263212 TAAGATTTAGGGTG
1 TAAGATTTATGGTC
69263226 TAAG-TTTATGGTC
1 TAAGATTTATGGTC
*
69263239 TAAGATTTATGGTT
1 TAAGATTTATGGTC
*
69263253 TATGATTTA
1 TAAGATTTA
69263262 GGGGTTGAGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
13 11 0.35
14 20 0.65
ACGTcount: A:0.28, C:0.02, G:0.24, T:0.46
Consensus pattern (14 bp):
TAAGATTTATGGTC
Found at i:69264133 original size:7 final size:7
Alignment explanation
Indices: 69264120--69264170 Score: 75
Period size: 7 Copynumber: 7.0 Consensus size: 7
69264110 AAATCTTCAA
69264120 AAAAATTT
1 AAAAA-TT
*
69264128 AAAATTT
1 AAAAATT
69264135 AAAAATT
1 AAAAATT
69264142 AAAAACTT
1 AAAAA-TT
69264150 AAAAATT
1 AAAAATT
69264157 AAAAATT
1 AAAAATT
69264164 AAAAATT
1 AAAAATT
69264171 TAATATTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
7 29 0.73
8 11 0.28
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (7 bp):
AAAAATT
Found at i:69264140 original size:15 final size:15
Alignment explanation
Indices: 69264120--69264178 Score: 75
Period size: 15 Copynumber: 4.0 Consensus size: 15
69264110 AAATCTTCAA
69264120 AAAAATTTAAAATTT
1 AAAAATTTAAAATTT
* *
69264135 AAAAATTAAAAACTT
1 AAAAATTTAAAATTT
*
69264150 AAAAA-TTAAAAATT
1 AAAAATTTAAAATTT
*
69264164 AAAAATTTAATATTT
1 AAAAATTTAAAATTT
69264179 TAGTCCAGTT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
14 12 0.32
15 25 0.68
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.36
Consensus pattern (15 bp):
AAAAATTTAAAATTT
Found at i:69264145 original size:22 final size:22
Alignment explanation
Indices: 69264120--69264178 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 22
69264110 AAATCTTCAA
69264120 AAAAATTTAAAATTTAAAAATT
1 AAAAATTTAAAATTTAAAAATT
* *
69264142 AAAAACTTAAAAATTAAAAATT
1 AAAAATTTAAAATTTAAAAATT
*
69264164 AAAAATTTAATATTT
1 AAAAATTTAAAATTT
69264179 TAGTCCAGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAAATTTAAAATTTAAAAATT
Found at i:69264380 original size:41 final size:41
Alignment explanation
Indices: 69264312--69264427 Score: 141
Period size: 41 Copynumber: 2.9 Consensus size: 41
69264302 AAACTAAAGA
* *
69264312 ATAGTGGCGTTTTTAGAT-AAAATGCCACAAAAAATTTAGCT
1 ATAGTGGCGTTTTTAG-TGAAAACGCCACAAAAAATTTACCT
* *
69264353 ATAGTGGCGTTTTTAGTGAAAACGCCAC-AAATA-TGACCT
1 ATAGTGGCGTTTTTAGTGAAAACGCCACAAAAAATTTACCT
* *
69264392 ACAGTGGCGTTTTT-GTGAAAACGCCGCAAAAAATTT
1 ATAGTGGCGTTTTTAGTGAAAACGCCACAAAAAATTT
69264428 CCATAGAAAC
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
38 12 0.19
39 21 0.33
40 6 0.09
41 25 0.39
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (41 bp):
ATAGTGGCGTTTTTAGTGAAAACGCCACAAAAAATTTACCT
Found at i:69269608 original size:46 final size:46
Alignment explanation
Indices: 69269552--69269724 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
69269542 TGGTTGAGCA
* *
69269552 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
69269598 TCCAAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * *
69269645 TCTGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
69269691 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
69269725 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 58 0.57
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:69288573 original size:46 final size:46
Alignment explanation
Indices: 69288396--69288573 Score: 145
Period size: 46 Copynumber: 3.8 Consensus size: 46
69288386 ACTGTGGGCT
* *
69288396 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTA--TAAGAACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GACGTAAG--CC
* * * * * *
69288442 TGTGAAAGACCATGTTTGGGACATGGTATCGGC-ATCGAGACG-AGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGACGTA-AGCC
*
69288490 AGTGTAAGACATGTCCGGGACAT-CTATCGGCCT-CGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGC-ATCGG-CTACGAGACGTAAGCC
69288536 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGA
69288574 TTATAGTCAG
Statistics
Matches: 104, Mismatches: 15, Indels: 26
0.72 0.10 0.18
Matches are distributed among these distances:
45 2 0.02
46 53 0.51
47 29 0.28
48 17 0.16
49 2 0.02
50 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGTAAGCC
Found at i:69311608 original size:44 final size:44
Alignment explanation
Indices: 69311545--69311701 Score: 182
Period size: 43 Copynumber: 3.6 Consensus size: 44
69311535 TGTGATATTG
* *
69311545 TGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTAGGACGTTGGCATCGA-TATTTGATTTACA
* * *
69311589 TGTAAGACCACGTCTGGGACATTGGCATC-ATATTTAATTT-CA
1 TGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTTACA
69311631 TGTAAGACC-CTGTCTAGGACAG-TGGCATCGATATTTGA-TTACA
1 TGTAAGACCAC-GTCTAGGAC-GTTGGCATCGATATTTGATTTACA
* *
69311674 TGTAAGACCATGTTTAGGACGTTGGCAT
1 TGTAAGACCACGTCTAGGACGTTGGCAT
69311702 TATATGAGCT
Statistics
Matches: 98, Mismatches: 8, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
41 1 0.01
42 30 0.31
43 39 0.40
44 28 0.29
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (44 bp):
TGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTTACA
Found at i:69314991 original size:26 final size:26
Alignment explanation
Indices: 69314962--69315043 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
69314952 TGATACAAAT
*
69314962 TGATAATGGGCTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69314988 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69315014 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
69315040 TGAT
1 TGAT
69315044 GGGAATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.30, C:0.09, G:0.27, T:0.34
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:69316676 original size:27 final size:26
Alignment explanation
Indices: 69316636--69316766 Score: 142
Period size: 27 Copynumber: 4.9 Consensus size: 26
69316626 AGGAAGCGTC
*
69316636 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTG-T
*
69316663 TTGGTGGCTCTGCCAC-ATATATCTGT
1 CTGGTGGCTCTGCCACAAT-TATCTGT
*
69316689 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTG-T
* *
69316717 CTAGTAGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTG-T
69316744 CTGGTGGCTCTGCCACAA-TATCT
1 CTGGTGGCTCTGCCACAATTATCT
69316767 ATATCTAGTG
Statistics
Matches: 88, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
26 10 0.11
27 74 0.84
28 4 0.05
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATTATCTGT
Found at i:69316788 original size:54 final size:54
Alignment explanation
Indices: 69316633--69316775 Score: 216
Period size: 54 Copynumber: 2.6 Consensus size: 54
69316623 TGGAGGAAGC
* * *
69316633 GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTAGCTCTGCCACATATATCT
69316687 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTAGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTAGCTCTGCCACATATATCT
* * *
69316741 GTTCTGGTGGCTCTGCCACAA-TATCTATATCTAGT
1 GTCCTGGTGGCTATGCCACAATTATCT-GATCTAGT
69316776 GACTTCGTCA
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTAGCTCTGCCACATATATCT
Found at i:69317396 original size:293 final size:293
Alignment explanation
Indices: 69316869--69317454 Score: 1118
Period size: 293 Copynumber: 2.0 Consensus size: 293
69316859 TGTAAGGCTG
*
69316869 GTACGGGGGTGTTATGGATGAATCTGGGTTGGGTTTCTGCATAAACATGTAATATCTGTTCTGTT
1 GTACGGGGGTGTTATGGATGAATCTGGGTTGGGTTTCTGCATAAACATGTAATATCTATTCTGTT
* * * *
69316934 TTGTTATGGGCCTATGGGCTTTATTCTGAATTTCTGTTCTGGGGTAAGGCTAACTTATTCTGTTT
66 CTGTTATGGGCCTATGGGCTTTATTCTGAATTTCTGTTCAGGGCTAAGGCCAACTTATTCTGTTT
*
69316999 TTGTGGGTTGAGCTGATTTAGACTATGGTTGGGTTATTTTACACACTGAGTTTCCCCAAACTCAC
131 CTGTGGGTTGAGCTGATTTAGACTATGGTTGGGTTATTTTACACACTGAGTTTCCCCAAACTCAC
69317064 CCCTTTTATTTTCATCCACGCAGGTAATCCCGAACCATAGTGGGCTTGGAGCTGTGAGGGAATTC
196 CCCTTTTATTTTCATCCACGCAGGTAATCCCGAACCATAGTGGGCTTGGAGCTGTGAGGGAATTC
69317129 GGAGTGGCCACCCGTTCTGAAAGTTTGATTTTC
261 GGAGTGGCCACCCGTTCTGAAAGTTTGATTTTC
69317162 GTACGGGGGTGTTATGGATGAATCTGGGTTGGGTTTCTGCATAAACATGTAATATCTATTCTGTT
1 GTACGGGGGTGTTATGGATGAATCTGGGTTGGGTTTCTGCATAAACATGTAATATCTATTCTGTT
69317227 CTGTTATGGGCCTATGGGCTTTATTCTGAATTTCTGTTCAGGGCTAAGGCCAACTTATTCTGTTT
66 CTGTTATGGGCCTATGGGCTTTATTCTGAATTTCTGTTCAGGGCTAAGGCCAACTTATTCTGTTT
69317292 CTGTGGGTTGAGCTGATTTAGACTATGGTTGGGTTATTTTACACACTGAGTTTCCCCAAACTCAC
131 CTGTGGGTTGAGCTGATTTAGACTATGGTTGGGTTATTTTACACACTGAGTTTCCCCAAACTCAC
69317357 CCCTTTTATTTTCATCCACGCAGGTAATCCCGAACCATAGTGGGCTTGGAGCTGTGAGGGAATTC
196 CCCTTTTATTTTCATCCACGCAGGTAATCCCGAACCATAGTGGGCTTGGAGCTGTGAGGGAATTC
69317422 GGAGTGGCCACCCGTTCTGAAAGTTTGATTTTC
261 GGAGTGGCCACCCGTTCTGAAAGTTTGATTTTC
69317455 TTCTGGTGAA
Statistics
Matches: 287, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
293 287 1.00
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.37
Consensus pattern (293 bp):
GTACGGGGGTGTTATGGATGAATCTGGGTTGGGTTTCTGCATAAACATGTAATATCTATTCTGTT
CTGTTATGGGCCTATGGGCTTTATTCTGAATTTCTGTTCAGGGCTAAGGCCAACTTATTCTGTTT
CTGTGGGTTGAGCTGATTTAGACTATGGTTGGGTTATTTTACACACTGAGTTTCCCCAAACTCAC
CCCTTTTATTTTCATCCACGCAGGTAATCCCGAACCATAGTGGGCTTGGAGCTGTGAGGGAATTC
GGAGTGGCCACCCGTTCTGAAAGTTTGATTTTC
Found at i:69323964 original size:27 final size:27
Alignment explanation
Indices: 69323921--69324061 Score: 157
Period size: 27 Copynumber: 5.2 Consensus size: 27
69323911 AGGAAGCGTC
*
69323921 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
69323948 CTGGTGGCTCTGGCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
69323974 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
69324002 CTGGTGGCTCTGCCAC-GTATATCT-ATT
1 CTGGTGGCTCTGCCACAAT-TATCTGA-T
*
69324029 CTAGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
69324056 CTGGTG
1 CTGGTG
69324062 ACTTCGTCAC
Statistics
Matches: 96, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
26 10 0.10
27 82 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:69324000 original size:54 final size:54
Alignment explanation
Indices: 69323918--69324061 Score: 218
Period size: 54 Copynumber: 2.7 Consensus size: 54
69323908 TGGAGGAAGC
*
69323918 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGGCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
69323972 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACGTATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * *
69324026 ATTCTAGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
69324062 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.07
54 77 0.93
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:69324073 original size:81 final size:80
Alignment explanation
Indices: 69323921--69324079 Score: 182
Period size: 81 Copynumber: 2.0 Consensus size: 80
69323911 AGGAAGCGTC
* * *
69323921 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGGCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
69323986 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
69324002 CTGGTGGCTCTGCCAC-GTATATCT-ATTCTAGTGGCTCTGCCACA-ATATCTGTATCTGGTGAC
1 CTGGTGGCTATGCCACAAT-TATCTGA-TCTAGTGGCTCTGCCACATATATCTGT-CCTGGTGAC
*
69324064 T-TCGTCACAATATCTG
63 TAT-GCCACAATATCTG
69324080 GCAGCCTTGC
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
80 17 0.25
81 50 0.75
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:69328183 original size:14 final size:14
Alignment explanation
Indices: 69328155--69328200 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
69328145 AGAGAGGAAA
**
69328155 GAATGATGAATGAT
1 GAATGATGAGGGAT
69328169 GAATGATGAGGGAT
1 GAATGATGAGGGAT
* *
69328183 GTATGATGTGGGAT
1 GAATGATGAGGGAT
69328197 GAAT
1 GAAT
69328201 AGAAATGTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.35, C:0.00, G:0.37, T:0.28
Consensus pattern (14 bp):
GAATGATGAGGGAT
Found at i:69340951 original size:39 final size:39
Alignment explanation
Indices: 69340827--69340962 Score: 152
Period size: 40 Copynumber: 3.4 Consensus size: 39
69340817 GGATATAGCT
* *
69340827 ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTACAGTA
1 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATT--AGTA
* *
69340867 ACTCG-TGCAAATGCCTTCGGGACTTAACCCAGATTTAGTA
1 ACTCGCT-CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTA
*
69340907 ACTCGCTCCAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATTAGTA
*
69340946 ACTCGCACAAATGCCTT
1 ACTCGCTCAAATGCCTT
69340963 NNNNNNNNNN
Statistics
Matches: 83, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
39 30 0.36
40 50 0.60
41 1 0.01
42 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (39 bp):
ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATTAGTA
Found at i:69345266 original size:19 final size:19
Alignment explanation
Indices: 69345235--69345273 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
69345225 TTCAATTATA
69345235 ATTTAACCCAAAA-TATTT
1 ATTTAACCCAAAATTATTT
*
69345253 ATTTTACCCAAAAATTATTT
1 ATTTAACCC-AAAATTATTT
69345273 A
1 A
69345274 AAACTATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 4 0.22
20 6 0.33
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTTAACCCAAAATTATTT
Found at i:69347579 original size:39 final size:40
Alignment explanation
Indices: 69347534--69347742 Score: 107
Period size: 41 Copynumber: 5.2 Consensus size: 40
69347524 CGGGGTTTAG
* * *
69347534 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
69347573 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** ** * * **
69347613 CCGGATATAGTCGTTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
69347653 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * * *
69347694 CCGGATATAGTCGCTTAGCACAAAAGCCTTTGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
69347735 CCGGATAT
1 CCGGATAT
69347743 CATTCGAGTA
Statistics
Matches: 147, Mismatches: 19, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
39 18 0.12
40 59 0.40
41 67 0.46
42 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:69347683 original size:41 final size:41
Alignment explanation
Indices: 69347557--69347742 Score: 252
Period size: 41 Copynumber: 4.6 Consensus size: 41
69347547 CTCGCACAAG
* * * * * *
69347557 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
69347597 GCCTTCGGGACTTAGCCCGGATATAGTCG-TTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
69347637 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
69347678 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
69347719 GCCTTTGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
69347743 CATTCGAGTA
Statistics
Matches: 131, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 57 0.44
41 68 0.52
42 3 0.02
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:69347691 original size:81 final size:82
Alignment explanation
Indices: 69347587--69347740 Score: 240
Period size: 81 Copynumber: 1.9 Consensus size: 82
69347577 ATATGGTCAC
* * *
69347587 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCG-TTAGCACAAATGCC-TTCGGATCTT
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTTCGGA-CTT
*
69347650 AGTCCGGATGTAGTCGCT
65 AGCCCGGATGTAGTCGCT
*
69347668 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTTGGGACTTA
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTTCGGACTTA
69347733 GCCCGGAT
66 GCCCGGAT
69347741 ATCATTCGAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 37 0.56
82 24 0.36
83 5 0.08
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (82 bp):
TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTTCGGACTTA
GCCCGGATGTAGTCGCT
Found at i:69350920 original size:13 final size:13
Alignment explanation
Indices: 69350902--69350927 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69350892 CCAATAAAAA
69350902 TCTGAAGAACCAC
1 TCTGAAGAACCAC
69350915 TCTGAAGAACCAC
1 TCTGAAGAACCAC
69350928 CTATCGAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.15, T:0.15
Consensus pattern (13 bp):
TCTGAAGAACCAC
Found at i:69358716 original size:12 final size:12
Alignment explanation
Indices: 69358665--69358716 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
69358655 ACTTAATCAC
69358665 TTTAATATTAAAA
1 TTTAATATT-AAA
69358678 TTTAAT-TTAATA
1 TTTAATATTAA-A
*
69358690 TTTATTAGATTAAA
1 TTTA--ATATTAAA
69358704 TTTAATATTAAA
1 TTTAATATTAAA
69358716 T
1 T
69358717 CTTATTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
11 2 0.06
12 15 0.45
13 6 0.18
14 6 0.18
15 4 0.12
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:69360759 original size:24 final size:22
Alignment explanation
Indices: 69360719--69360766 Score: 53
Period size: 24 Copynumber: 2.1 Consensus size: 22
69360709 ATGCCTTTGA
*
69360719 GATGTGGTTTGTGATTGTGTATAT
1 GATGTGGTTTGTAATTG-GT-TAT
69360743 GATGT-GTTATGTAATTGGTTAT
1 GATGTGGTT-TGTAATTGGTTAT
69360765 GA
1 GA
69360767 ATGCTTGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 5 0.23
23 5 0.23
24 12 0.55
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (22 bp):
GATGTGGTTTGTAATTGGTTAT
Found at i:69361737 original size:12 final size:13
Alignment explanation
Indices: 69361722--69361774 Score: 51
Period size: 12 Copynumber: 4.3 Consensus size: 13
69361712 TAAACATTAA
*
69361722 ATTAA-ATTTAAT
1 ATTAATATTAAAT
*
69361734 ATTAAGA-TAAAT
1 ATTAATATTAAAT
69361746 ATTAAT-TTAAAT
1 ATTAATATTAAAT
69361758 -TTAATATTAAACT
1 ATTAATATTAAA-T
69361771 ATTA
1 ATTA
69361775 CAATAATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
11 5 0.15
12 24 0.71
13 2 0.06
14 3 0.09
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (13 bp):
ATTAATATTAAAT
Found at i:69361742 original size:29 final size:29
Alignment explanation
Indices: 69361709--69361767 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
69361699 TTTATCTTGT
69361709 AGATAAACATTAAATTAAATTTAATATTA
1 AGATAAACATTAAATTAAATTTAATATTA
* *
69361738 AGATAAATATTAATTTAAATTTAATATTA
1 AGATAAACATTAAATTAAATTTAATATTA
69361767 A
1 A
69361768 ACTATTACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (29 bp):
AGATAAACATTAAATTAAATTTAATATTA
Found at i:69363400 original size:14 final size:15
Alignment explanation
Indices: 69363367--69363398 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
69363357 TATGCATGTA
*
69363367 AAATATAAAAAACAT
1 AAATACAAAAAACAT
69363382 AAATACAAAAAACAT
1 AAATACAAAAAACAT
69363397 AA
1 AA
69363399 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.75, C:0.09, G:0.00, T:0.16
Consensus pattern (15 bp):
AAATACAAAAAACAT
Found at i:69375259 original size:18 final size:18
Alignment explanation
Indices: 69375218--69375253 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
69375208 CATTCCGAAG
* *
69375218 TATATATATATATACATA
1 TATATGTATATATACACA
69375236 TATATGTATATATACACA
1 TATATGTATATATACACA
69375254 AGTATGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (18 bp):
TATATGTATATATACACA
Found at i:69375773 original size:27 final size:27
Alignment explanation
Indices: 69375735--69375912 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
69375725 TAAATTGTAC
* *
69375735 AGCACTAAGTGTGCGGTTTGACGATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
69375762 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
69375788 ATGCACTAAGTGTGCGAATTGA-TCATGC
1 A-GCACTAAGTGTGCGATTTGACT-ATGT
*
69375816 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
69375844 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
69375871 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
69375898 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
69375913 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.81
28 22 0.17
29 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:69375903 original size:82 final size:81
Alignment explanation
Indices: 69375732--69375913 Score: 231
Period size: 82 Copynumber: 2.2 Consensus size: 81
69375722 GATTAAATTG
* *
69375732 TACAGCACTAAGTGTGCGGTTTGACGATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGGTTTGACGATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
69375797 GTGTGCGAATTGATCA
66 GTGTGCGAATTGATCA
* * * ** *
69375813 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCG-GTTTGACGATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* *
69375877 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGATCA
* *
69375895 TATAGCACTGAGTGTGCGG
1 TACAGCACTAAGTGTGCGG
69375914 GCTCAATATA
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGGTTTGACGATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGATCA
Found at i:69375923 original size:27 final size:27
Alignment explanation
Indices: 69375817--69375923 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
69375807 TGATCATGCG
* * * *
69375817 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
69375845 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
69375872 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
69375899 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
69375924 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:69379543 original size:19 final size:22
Alignment explanation
Indices: 69379497--69379542 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
69379487 AAGTAGGTTG
69379497 TATATTATTTTTTGTAATATTA
1 TATATTATTTTTTGTAATATTA
69379519 TATATTATTTTTAT-TAAT-TTA
1 TATATTATTTTT-TGTAATATTA
69379540 TAT
1 TAT
69379543 TTTAATAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.26
22 16 0.70
23 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
TATATTATTTTTTGTAATATTA
Found at i:69379595 original size:21 final size:20
Alignment explanation
Indices: 69379566--69379605 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
69379556 ATATTAAGAA
69379566 TATTATTAAATTATATATTAT
1 TATTATTAAATTATA-ATTAT
*
69379587 TATTGTTAAATTATAATTA
1 TATTATTAAATTATAATTA
69379606 ATAATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
TATTATTAAATTATAATTAT
Found at i:69379666 original size:57 final size:57
Alignment explanation
Indices: 69379515--69379667 Score: 168
Period size: 57 Copynumber: 2.6 Consensus size: 57
69379505 TTTTTGTAAT
* **
69379515 ATTATATATTATTTTTATTAATTTATATTTTAATAATTGCTATATTAAGAATATTATTAA
1 ATTATATATTATTTTTATTAAATTATA-TTTAATAA-T-CTATATTAAGAATAGGATTAA
* * *
69379575 ATTATATATTATTATTGTTAAATTATAATTAATAAT-T-TATTAA-AATAGGATTAA
1 ATTATATATTATTTTTATTAAATTATATTTAATAATCTATATTAAGAATAGGATTAA
*
69379629 ATTATGTATTATTGTTTTTATTAAATTATATTTAATAAT
1 ATTA--TA-TATTATTTTTATTAAATTATATTTAATAAT
69379668 AATCCTATTA
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
54 13 0.16
55 6 0.08
56 3 0.04
57 26 0.32
58 1 0.01
59 7 0.09
60 24 0.30
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.54
Consensus pattern (57 bp):
ATTATATATTATTTTTATTAAATTATATTTAATAATCTATATTAAGAATAGGATTAA
Found at i:69382348 original size:16 final size:16
Alignment explanation
Indices: 69382324--69382382 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
69382314 GGATATTACA
*
69382324 ATTCTATTACAACTCT
1 ATTCCATTACAACTCT
**
69382340 ATTCCATTACAGTTCT
1 ATTCCATTACAACTCT
* *
69382356 ATTTCATTACAACCCT
1 ATTCCATTACAACTCT
69382372 ATTCCATTACA
1 ATTCCATTACA
69382383 CTGAACTAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.31, C:0.27, G:0.02, T:0.41
Consensus pattern (16 bp):
ATTCCATTACAACTCT
Found at i:69384756 original size:20 final size:20
Alignment explanation
Indices: 69384733--69384797 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
69384723 TCTGCTATAG
69384733 CTTCGATTAATCCACTGAAA
1 CTTCGATTAATCCACTGAAA
* * ** * *
69384753 CTTCAAGTAGATCTGCTGTAG
1 CTTCGATTA-ATCCACTGAAA
69384774 CTTCGATTAATCCACTGAAA
1 CTTCGATTAATCCACTGAAA
69384794 CTTC
1 CTTC
69384798 AAGGAGATCC
Statistics
Matches: 32, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
20 18 0.56
21 14 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (20 bp):
CTTCGATTAATCCACTGAAA
Found at i:69384806 original size:41 final size:41
Alignment explanation
Indices: 69384702--69384806 Score: 183
Period size: 41 Copynumber: 2.6 Consensus size: 41
69384692 TTCAATCAAT
*
69384702 TCCACTGAAACTTCAAGGAAATCTGCTATAGCTTCGATTAA
1 TCCACTGAAACTTCAAGGAGATCTGCTATAGCTTCGATTAA
* *
69384743 TCCACTGAAACTTCAAGTAGATCTGCTGTAGCTTCGATTAA
1 TCCACTGAAACTTCAAGGAGATCTGCTATAGCTTCGATTAA
69384784 TCCACTGAAACTTCAAGGAGATC
1 TCCACTGAAACTTCAAGGAGATC
69384807 CACTGTGGCT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (41 bp):
TCCACTGAAACTTCAAGGAGATCTGCTATAGCTTCGATTAA
Found at i:69384809 original size:21 final size:21
Alignment explanation
Indices: 69384742--69384811 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 21
69384732 GCTTCGATTA
69384742 ATCCACTGAAACTTCAAGTAG
1 ATCCACTGAAACTTCAAGTAG
** * * * *
69384763 ATCTGCTGTAGCTTCGATTA-
1 ATCCACTGAAACTTCAAGTAG
*
69384783 ATCCACTGAAACTTCAAGGAG
1 ATCCACTGAAACTTCAAGTAG
69384804 ATCCACTG
1 ATCCACTG
69384812 TGGCTTTTAG
Statistics
Matches: 35, Mismatches: 13, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
20 13 0.37
21 22 0.63
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.27
Consensus pattern (21 bp):
ATCCACTGAAACTTCAAGTAG
Found at i:69384889 original size:72 final size:72
Alignment explanation
Indices: 69384772--69384914 Score: 268
Period size: 72 Copynumber: 2.0 Consensus size: 72
69384762 GATCTGCTGT
69384772 AGCTTCGATTAATCCACTGAAACTTCAAGGAGATCCACTGTGGCTTTTAGCTGCTCCAACGCCAT
1 AGCTTCGATTAATCCACTGAAACTTCAAGGAGATCCACTGTGGCTTTTAGCTGCTCCAACGCCAT
69384837 TTCAGGA
66 TTCAGGA
**
69384844 AGCTTCGATTAATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCTGCTCCAACGCCAT
1 AGCTTCGATTAATCCACTGAAACTTCAAGGAGATCCACTGTGGCTTTTAGCTGCTCCAACGCCAT
69384909 TTCAGG
66 TTCAGG
69384915 GAGAAGATAT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (72 bp):
AGCTTCGATTAATCCACTGAAACTTCAAGGAGATCCACTGTGGCTTTTAGCTGCTCCAACGCCAT
TTCAGGA
Found at i:69385000 original size:44 final size:44
Alignment explanation
Indices: 69384937--69385267 Score: 184
Period size: 44 Copynumber: 7.6 Consensus size: 44
69384927 GATTTTCAAC
69384937 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGAT
* * * * * *
69384981 CTGTTTCCCTACTGCTTAGGTGTTTAAGATCTTGTAAAATCA--G-C
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-GCTTGT--CATCATTGAT
* ** * *
69385025 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATC-GCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATT-GAT
* * * *
69385069 CTGTTTCCCTACTGCTTAGGGGGTTAA-GATCTGT-A-AATTTAGT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCT-TGTCATCATTGA-T
** * ** *
69385112 CTGTTACCCTACTGCTTAGGGTTTTAAGACTCATCATC-TTCAAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATT-GAT
* * * *
69385156 CTGCTT-CCCTACTGCTTAGGGGGTTGAGG-TCTGT-A-AATTTAGC
1 CTG-TTACCCTACTGCTTAGGGGGTTAAGGCT-TGTCATCATTGA-T
* * ** *
69385199 CTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCATC-TTCAAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATT-GAT
* *
69385243 CTGTTTCCTTACTGCTTAGGGGGTT
1 CTGTTACCCTACTGCTTAGGGGGTT
69385268 GAGATCTGTA
Statistics
Matches: 212, Mismatches: 52, Indels: 46
0.68 0.17 0.15
Matches are distributed among these distances:
40 1 0.00
42 4 0.02
43 62 0.29
44 131 0.62
45 10 0.05
47 4 0.02
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.37
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGAT
Found at i:69385131 original size:87 final size:87
Alignment explanation
Indices: 69384936--69385280 Score: 467
Period size: 87 Copynumber: 4.0 Consensus size: 87
69384926 TGATTTTCAA
* * ** * *
69384936 CCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATT-GATCTGTTTCCCTACTGCTTAG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCA-CCTTCAATCTGTTTCCCTACTGCTTAG
* * * *
69385000 GTGTTTAAGATCTTGTAAAATCAG
65 GGGGTTAAGATC-TGTAAATTTAG
* * *
69385024 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCACCTTCAATCTGTTTCCCTACTGCTTAGG
69385089 GGGTTAAGATCTGTAAATTTAG
66 GGGTTAAGATCTGTAAATTTAG
* * * *
69385111 TCTGTTACCCTACTGCTTAGGGTTTTAAGACTCATCATCTTCAATCTGCTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCACCTTCAATCTGTTTCCCTACTGCTTAGG
* *
69385176 GGGTTGAGGTCTGTAAATTTAG
66 GGGTTAAGATCTGTAAATTTAG
* *
69385198 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCATCTTCAATCTGTTTCCTTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCACCTTCAATCTGTTTCCCTACTGCTTAGG
*
69385263 GGGTTGAGATCTGTAAAT
66 GGGTTAAGATCTGTAAAT
69385281 CTTCAATCTG
Statistics
Matches: 233, Mismatches: 23, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
87 168 0.72
88 65 0.28
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (87 bp):
CCTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCACCTTCAATCTGTTTCCCTACTGCTTAGG
GGGTTAAGATCTGTAAATTTAG
Found at i:69385484 original size:44 final size:44
Alignment explanation
Indices: 69385381--69385570 Score: 156
Period size: 44 Copynumber: 4.3 Consensus size: 44
69385371 TTTCAGCCTA
* * * * * *
69385381 TTACCCTACTACTTAGGGGGTT-AAGGTCTGTAAATTTAG-CCTG
1 TTACCCTACTGCTTAGGGGGTTAAAGCTC-GTTAACTTCGATCTG
**
69385424 TTACCCTACTGCTTAGGGGGTTAAAGCTCGTTATTTTCGATCTG
1 TTACCCTACTGCTTAGGGGGTTAAAGCTCGTTAACTTCGATCTG
* * * * *
69385468 TTTCCCTACTGCTTAGGGTGAT-AAGATC-TATGAACTTC-AGCTTG
1 TTACCCTACTGCTTAGGGGGTTAAAGCTCGT-T-AACTTCGATC-TG
** *
69385512 TTACCCTACTGCTTAGGGGGTTAAAGCTCGTTGCCTTCGATCTA
1 TTACCCTACTGCTTAGGGGGTTAAAGCTCGTTAACTTCGATCTG
*
69385556 TTCCCCTACTGCTTA
1 TTACCCTACTGCTTA
69385571 TAGGGTAAGA
Statistics
Matches: 117, Mismatches: 22, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
42 1 0.01
43 36 0.31
44 71 0.61
45 8 0.07
46 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (44 bp):
TTACCCTACTGCTTAGGGGGTTAAAGCTCGTTAACTTCGATCTG
Found at i:69390440 original size:620 final size:620
Alignment explanation
Indices: 69389251--69390484 Score: 2387
Period size: 620 Copynumber: 2.0 Consensus size: 620
69389241 TCTATGAAGG
*
69389251 AAAGACATCCTTGAACTCTTGGAGTAACTCAATAAGGTCCCGCTTTGTCTCTGTGGTGATGCAAG
1 AAAGACATCCTTGAACTCTTGGAGTAACTCAATAAGGTCCCGCTTTGTCTCTGTAGTGATGCAAG
*
69389316 CTCCGATCTTTACTTCTCTCCTTTCTAGTTCATCTCCCAAGTTCACGACTTCTATGGTCTCTTTG
66 CTCCGATCTTTACTTCTCTCATTTCTAGTTCATCTCCCAAGTTCACGACTTCTATGGTCTCTTTG
69389381 TGGGGTAGAATCTGTTTCTCCTCGTGTTCTACCATCCTTAACAAATCAGGGAATAAGTTACAGTC
131 TGGGGTAGAATCTGTTTCTCCTCGTGTTCTACCATCCTTAACAAATCAGGGAATAAGTTACAGTC
69389446 TCCGTCATCCTCAAAGTCCTGAGATCCTTCTAGACACATATCCCGCTCAAAAGGAGACTCTGAAT
196 TCCGTCATCCTCAAAGTCCTGAGATCCTTCTAGACACATATCCCGCTCAAAAGGAGACTCTGAAT
69389511 GAGTAGCAACGTCACTCACATCATTGATATCTGAAGACCTGTTGTAGGTACGAAGGAAGATACAA
261 GAGTAGCAACGTCACTCACATCATTGATATCTGAAGACCTGTTGTAGGTACGAAGGAAGATACAA
69389576 AGAACAAGAGAATCTAAGAACAAAGATATGTATGGTATGATCATGAATGAAAAATATTTGCATGT
326 AGAACAAGAGAATCTAAGAACAAAGATATGTATGGTATGATCATGAATGAAAAATATTTGCATGT
69389641 AATAAGTCGAAAGGATGCATAGGGCACTTCTTACTCCTAGGCCTAGAGCAATAAGTGTGTTTTGG
391 AATAAGTCGAAAGGATGCATAGGGCACTTCTTACTCCTAGGCCTAGAGCAATAAGTGTGTTTTGG
69389706 ACATTACTCTGAGTTAGTTCTAAAGACTACAGGAATCTCTTCCGCAGTCCAATTATTCAAAACAC
456 ACATTACTCTGAGTTAGTTCTAAAGACTACAGGAATCTCTTCCGCAGTCCAATTATTCAAAACAC
* *
69389771 TTCCCGGCTCATAGGGGCGAATGCCTGACAAATTCTCGACCCTCGTTCCTTCTTTATATATGGCG
521 TTCCCGGCTCATAGGGGCGAATGCCTGACAAATTCTCGACCCCCGTTCCTTCTTCATATATGGCG
69389836 TTGATGTCCAAACTTTCCATCATTCCTTCGAATGC
586 TTGATGTCCAAACTTTCCATCATTCCTTCGAATGC
* *
69389871 AAAGACATCTTTGAACTCTTGGAGTAACTCAATAAGGTCCCGCTTTGTCTTTGTAGTGATGCAAG
1 AAAGACATCCTTGAACTCTTGGAGTAACTCAATAAGGTCCCGCTTTGTCTCTGTAGTGATGCAAG
69389936 CTCCGATCTTTACTTCTCTCATTTCTAGTTCATCTCCCAAGTTCACGACTTCTATGGTCTCTTTG
66 CTCCGATCTTTACTTCTCTCATTTCTAGTTCATCTCCCAAGTTCACGACTTCTATGGTCTCTTTG
69390001 TGGGGTAGAATCTGTTTCTCCTCGTGTTCTACCATCCTTAACAAATCAGGGAATAAGTTACAGTC
131 TGGGGTAGAATCTGTTTCTCCTCGTGTTCTACCATCCTTAACAAATCAGGGAATAAGTTACAGTC
69390066 TCCGTCATCCTCAAAGTCCTGAGATCCTTCTAGACACATATCCCGCTCAAAAGGAGACTCTGAAT
196 TCCGTCATCCTCAAAGTCCTGAGATCCTTCTAGACACATATCCCGCTCAAAAGGAGACTCTGAAT
69390131 GAGTAGCAACGTCACTCACATCATTGATATCTGAAGACCTGTTGTAGGTACGAAGGAAGATACAA
261 GAGTAGCAACGTCACTCACATCATTGATATCTGAAGACCTGTTGTAGGTACGAAGGAAGATACAA
69390196 AGAACAAGAGAATCTAAGAACAAAGATATGTATGGTATGATCATGAATGAAAAATATTTGCATGT
326 AGAACAAGAGAATCTAAGAACAAAGATATGTATGGTATGATCATGAATGAAAAATATTTGCATGT
69390261 AATAAGTCGAAAGGATGCATAGGGCACTTCTTACTCCTAGGCCTAGAGCAATAAGTGTGTTTTGG
391 AATAAGTCGAAAGGATGCATAGGGCACTTCTTACTCCTAGGCCTAGAGCAATAAGTGTGTTTTGG
*
69390326 ACATTACTCTGAGTTAGTTCTAAAGACTACAGGAATCTCTTCCGCAGTCCAATTATTCAGAACAC
456 ACATTACTCTGAGTTAGTTCTAAAGACTACAGGAATCTCTTCCGCAGTCCAATTATTCAAAACAC
* *
69390391 TTCCCGGCTCATAGGGGCGAATGCCTGACAAATTCTCTACCCCCGTTCCTTCTTCATATGTGGCG
521 TTCCCGGCTCATAGGGGCGAATGCCTGACAAATTCTCGACCCCCGTTCCTTCTTCATATATGGCG
69390456 TTGATGTCCAAACTTTCCATCATTCCTTC
586 TTGATGTCCAAACTTTCCATCATTCCTTC
69390485 CAAGATTTCC
Statistics
Matches: 605, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
620 605 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (620 bp):
AAAGACATCCTTGAACTCTTGGAGTAACTCAATAAGGTCCCGCTTTGTCTCTGTAGTGATGCAAG
CTCCGATCTTTACTTCTCTCATTTCTAGTTCATCTCCCAAGTTCACGACTTCTATGGTCTCTTTG
TGGGGTAGAATCTGTTTCTCCTCGTGTTCTACCATCCTTAACAAATCAGGGAATAAGTTACAGTC
TCCGTCATCCTCAAAGTCCTGAGATCCTTCTAGACACATATCCCGCTCAAAAGGAGACTCTGAAT
GAGTAGCAACGTCACTCACATCATTGATATCTGAAGACCTGTTGTAGGTACGAAGGAAGATACAA
AGAACAAGAGAATCTAAGAACAAAGATATGTATGGTATGATCATGAATGAAAAATATTTGCATGT
AATAAGTCGAAAGGATGCATAGGGCACTTCTTACTCCTAGGCCTAGAGCAATAAGTGTGTTTTGG
ACATTACTCTGAGTTAGTTCTAAAGACTACAGGAATCTCTTCCGCAGTCCAATTATTCAAAACAC
TTCCCGGCTCATAGGGGCGAATGCCTGACAAATTCTCGACCCCCGTTCCTTCTTCATATATGGCG
TTGATGTCCAAACTTTCCATCATTCCTTCGAATGC
Found at i:69395814 original size:3 final size:3
Alignment explanation
Indices: 69395806--69395947 Score: 234
Period size: 3 Copynumber: 47.0 Consensus size: 3
69395796 NNNNNNNNNG
69395806 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
69395854 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
69395902 ATA ATA ATA ATA ATA ATA CA-A ACA ATA ATA CAT- ATA TATA ATA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA ATA -ATA ATA ATA
69395948 GTAGTCAGAA
Statistics
Matches: 133, Mismatches: 1, Indels: 10
0.92 0.01 0.07
Matches are distributed among these distances:
2 3 0.02
3 124 0.93
4 6 0.05
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:69396065 original size:14 final size:14
Alignment explanation
Indices: 69396046--69396077 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
69396036 TAAATAATAG
*
69396046 TAAAAATAATAAAA
1 TAAAAAAAATAAAA
69396060 TAAAAAAAATAAAA
1 TAAAAAAAATAAAA
69396074 TAAA
1 TAAA
69396078 GCTCTCAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
TAAAAAAAATAAAA
Found at i:69396525 original size:38 final size:38
Alignment explanation
Indices: 69396483--69396562 Score: 133
Period size: 38 Copynumber: 2.1 Consensus size: 38
69396473 GGTGGTTTAA
* * *
69396483 GTGGCTAAGGTGGTTGGCCAATAAGGGTGGTGGAGTAG
1 GTGGCTAAGGTGGGTGGCCAATAAGAGTAGTGGAGTAG
69396521 GTGGCTAAGGTGGGTGGCCAATAAGAGTAGTGGAGTAG
1 GTGGCTAAGGTGGGTGGCCAATAAGAGTAGTGGAGTAG
69396559 GTGG
1 GTGG
69396563 GATTAGGGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.23, C:0.07, G:0.47, T:0.23
Consensus pattern (38 bp):
GTGGCTAAGGTGGGTGGCCAATAAGAGTAGTGGAGTAG
Found at i:69412523 original size:26 final size:27
Alignment explanation
Indices: 69412460--69412533 Score: 107
Period size: 26 Copynumber: 2.8 Consensus size: 27
69412450 TATTTTCTAG
69412460 AAATTTTACC-AGAGGTAAAATCGTCAA
1 AAATTTTACCAAG-GGTAAAATCGTCAA
* *
69412487 AAATTTCACCAAGGGTAAAATTGTC-A
1 AAATTTTACCAAGGGTAAAATCGTCAA
69412513 AAATTTTACCAAGGGTAAAAT
1 AAATTTTACCAAGGGTAAAAT
69412534 AGGGATGAGA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 21 0.49
27 20 0.47
28 2 0.05
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.27
Consensus pattern (27 bp):
AAATTTTACCAAGGGTAAAATCGTCAA
Found at i:69413715 original size:16 final size:16
Alignment explanation
Indices: 69413694--69413724 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69413684 TTCACTATTA
*
69413694 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
69413710 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
69413725 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:69415050 original size:12 final size:12
Alignment explanation
Indices: 69415033--69415066 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
69415023 CGGCCCGTCC
69415033 ATATTAATTTTT
1 ATATTAATTTTT
*
69415045 ATATTATTTTTT
1 ATATTAATTTTT
69415057 ATA-TAATTTT
1 ATATTAATTTT
69415067 GAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:69415224 original size:30 final size:30
Alignment explanation
Indices: 69415190--69415252 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
69415180 ATTTAACAAG
69415190 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
* *
69415220 CAAATGTCTTTAAACTAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
69415250 CAA
1 CAA
69415253 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.56, C:0.14, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:69416164 original size:16 final size:16
Alignment explanation
Indices: 69416145--69416202 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
69416135 TAATAAGATT
69416145 TAATATTAAATTAATA
1 TAATATTAAATTAATA
* * *
69416161 TAATATT-TATCAAGA
1 TAATATTAAATTAATA
* *
69416176 TAAATATTATATTAATT
1 T-AATATTAAATTAATA
69416193 TAATATTAAA
1 TAATATTAAA
69416203 GTGATTAAGT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
15 6 0.18
16 21 0.64
17 6 0.18
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (16 bp):
TAATATTAAATTAATA
Found at i:69422311 original size:93 final size:93
Alignment explanation
Indices: 69422204--69422374 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
69422194 GCCCCTAAGT
* *
69422204 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69422269 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
69422297 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69422362 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69422375 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69422371 original size:46 final size:46
Alignment explanation
Indices: 69422199--69422371 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
69422189 AACCCGCCCC
* * *
69422199 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
69422245 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
69422293 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
69422338 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69422372 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:69422828 original size:30 final size:30
Alignment explanation
Indices: 69422794--69422853 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
69422784 ATTTAATACG
69422794 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
69422824 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
69422854 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:69429389 original size:93 final size:93
Alignment explanation
Indices: 69429277--69429448 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69429267 CGCCCATAAG
* *
69429277 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69429342 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
69429370 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69429435 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69429449 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:69429445 original size:46 final size:46
Alignment explanation
Indices: 69429270--69429445 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
69429260 TGTAACCCGC
* * *
69429270 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
69429316 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
69429366 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
69429409 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
69429446 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:69434521 original size:21 final size:21
Alignment explanation
Indices: 69434496--69434566 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
69434486 TTATGTGTAT
69434496 TTATAAAATTTTAACAAAAAA
1 TTATAAAATTTTAACAAAAAA
* *
69434517 TTATAATATTTAAATCTTAAAAAA
1 TTATAAAATTTTAA-C--AAAAAA
* * *
69434541 TTCTAAAATTATGACAAAAAA
1 TTATAAAATTTTAACAAAAAA
*
69434562 GTATA
1 TTATA
69434567 TTACAAAAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
21 21 0.55
22 1 0.03
23 1 0.03
24 15 0.39
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (21 bp):
TTATAAAATTTTAACAAAAAA
Found at i:69443570 original size:61 final size:63
Alignment explanation
Indices: 69443470--69443588 Score: 138
Period size: 61 Copynumber: 1.9 Consensus size: 63
69443460 TATGCTCTTA
* * *
69443470 TATGTAGCAGAGTCCGAGTCAACCGAGACCAGTTCAATCTGTTT-TTGATTGTTATAAATCGTG
1 TATGTAGCAGAGTCCGAGTCAACAGAGACCAGATCAATCT-TTTATCGATTGTTATAAATCGTG
* * *
69443533 TATGTAGGAGAGT-C-AGTCAATAGAGACCA-ATCAAATCTTTTATCGGTTGTTATAAA
1 TATGTAGCAGAGTCCGAGTCAACAGAGACCAGATC-AATCTTTTATCGATTGTTATAAA
69443589 CTATGTAGCC
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
60 5 0.10
61 30 0.62
62 1 0.02
63 12 0.25
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (63 bp):
TATGTAGCAGAGTCCGAGTCAACAGAGACCAGATCAATCTTTTATCGATTGTTATAAATCGTG
Found at i:69444596 original size:14 final size:14
Alignment explanation
Indices: 69444577--69444609 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
69444567 TGGGCAGTAT
*
69444577 AAGAAGAAGAGAAA
1 AAGAAGAAGAAAAA
69444591 AAGAAGAAGAAAAA
1 AAGAAGAAGAAAAA
69444605 AAGAA
1 AAGAA
69444610 ATAGAGATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (14 bp):
AAGAAGAAGAAAAA
Found at i:69444973 original size:47 final size:46
Alignment explanation
Indices: 69444882--69444993 Score: 129
Period size: 47 Copynumber: 2.5 Consensus size: 46
69444872 TTTGTAATGT
* * *
69444882 TGTTGTTGTTTAAATGAAAAACCAACTTATATGATAACTGGTATTG
1 TGTTGTTGTTGAAATGGAAAACCAACTTATATGATAACTAGTATTG
* * **
69444928 CTGTTGTTGTTGAAATGGAAAACCAGCTTATGTGATTGCTAGTATTG
1 -TGTTGTTGTTGAAATGGAAAACCAACTTATATGATAACTAGTATTG
*
69444975 AG--GTTGTTGAAATGGAAAA
1 TGTTGTTGTTGAAATGGAAAA
69444994 TAGTATTATG
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
44 17 0.30
46 1 0.02
47 39 0.68
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.37
Consensus pattern (46 bp):
TGTTGTTGTTGAAATGGAAAACCAACTTATATGATAACTAGTATTG
Found at i:69448963 original size:21 final size:21
Alignment explanation
Indices: 69448907--69448964 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
69448897 TCTCTTAAGA
*
69448907 CAGCTTCTTGGTAAGTTGGGG
1 CAGCTTCTTGGTGAGTTGGGG
* *
69448928 CAGCTTGTTGATGAGTTGGGG
1 CAGCTTCTTGGTGAGTTGGGG
*
69448949 CTA-TTTCTTGGTGAGT
1 C-AGCTTCTTGGTGAGT
69448965 GGGTGTAACA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
21 29 0.97
22 1 0.03
ACGTcount: A:0.14, C:0.12, G:0.36, T:0.38
Consensus pattern (21 bp):
CAGCTTCTTGGTGAGTTGGGG
Found at i:69450995 original size:26 final size:24
Alignment explanation
Indices: 69450937--69450995 Score: 57
Period size: 26 Copynumber: 2.3 Consensus size: 24
69450927 TCATTTAATC
69450937 TCATTAAGCATATAACACATAATAA
1 TCATTAAG-ATATAACACATAATAA
*
69450962 TCATTTAAG-TATAACTAACATAAATAT
1 TCA-TTAAGATATAAC--ACAT-AATAA
69450989 TCATTAA
1 TCATTAA
69450996 CATTTAAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
24 6 0.21
25 3 0.10
26 13 0.45
27 7 0.24
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.34
Consensus pattern (24 bp):
TCATTAAGATATAACACATAATAA
Found at i:69453641 original size:186 final size:186
Alignment explanation
Indices: 69453294--69453642 Score: 511
Period size: 186 Copynumber: 1.9 Consensus size: 186
69453284 GTAAAGAATG
* * *
69453294 TTTACATTGCAAGAAAGACAACTTACTTCAGTAGATAATCTACATGAGCCCGTAATCCCGTAAAA
1 TTTACATTGCAAGAAAGACAACTTACTTCAGTAGATAATCTAAACGAGCCCGTAATCCCATAAAA
* *
69453359 GAATCAAAGTGAGCATTTGATTCAAATACTGAGAAGGATTATTATGTCATCTACAATTCTAATTG
66 GAATCAAAGTGAGCATTTGATTCAAATACTGAGAAAGATTATTATGTCATCTACAATTCCAATTG
* * * *
69453424 GGGAGATGACTAGTCTTGGCTATCAGAGCAGTTGACTTCATGAGTGGAGACATAGA
131 GGAAGATAACTAGTCTTAGCCATCAGAGCAGTTGACTTCATGAGTGGAGACATAGA
* * * * *
69453480 TTTACATTGCAATAAAGACAACTTATTTCTGTA-ACTAATCTAAACGAGTCTGTAATCCCATAAA
1 TTTACATTGCAAGAAAGACAACTTACTTCAGTAGA-TAATCTAAACGAGCCCGTAATCCCATAAA
* * *
69453544 AGAATCAAAGTGATCATTTGATTCAAATACTTAGAAAGATTATTATGTCATCTACAATTCCATTT
65 AGAATCAAAGTGAGCATTTGATTCAAATACTGAGAAAGATTATTATGTCATCTACAATTCCAATT
**
69453609 GGGAAGATAACTAGTCTTAGCCATTGGAGCAGTT
130 GGGAAGATAACTAGTCTTAGCCATCAGAGCAGTT
69453643 AACTGCACAG
Statistics
Matches: 143, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
185 1 0.01
186 142 0.99
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (186 bp):
TTTACATTGCAAGAAAGACAACTTACTTCAGTAGATAATCTAAACGAGCCCGTAATCCCATAAAA
GAATCAAAGTGAGCATTTGATTCAAATACTGAGAAAGATTATTATGTCATCTACAATTCCAATTG
GGAAGATAACTAGTCTTAGCCATCAGAGCAGTTGACTTCATGAGTGGAGACATAGA
Found at i:69453965 original size:19 final size:19
Alignment explanation
Indices: 69453921--69453986 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 19
69453911 TACAAAATAA
*
69453921 TCAAAATAATTTTCATAAAT
1 TCAAAATAATTTT-AAAAAT
* *
69453941 TGAAAATAATTTTTAAAAT
1 TCAAAATAATTTTAAAAAT
69453960 TCAAAAT-ATTTATAAAAAT
1 TCAAAATAATTT-TAAAAAT
69453979 TCTAAAAT
1 TC-AAAAT
69453987 TTTTATTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
18 4 0.10
19 18 0.46
20 17 0.44
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (19 bp):
TCAAAATAATTTTAAAAAT
Found at i:69453991 original size:20 final size:19
Alignment explanation
Indices: 69453937--69453992 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
69453927 TAATTTTCAT
* *
69453937 AAATTGAAAATAATTT-TTA
1 AAATTCAAAAT-ATTTATAA
69453956 AAATTCAAAATATTTATAA
1 AAATTCAAAATATTTATAA
*
69453975 AAATTCTAAAATTTTTAT
1 AAATTC-AAAATATTTAT
69453993 TTTAAAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.12
19 18 0.56
20 10 0.31
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (19 bp):
AAATTCAAAATATTTATAA
Found at i:69454054 original size:19 final size:20
Alignment explanation
Indices: 69453962--69454057 Score: 65
Period size: 19 Copynumber: 4.8 Consensus size: 20
69453952 TTTAAAATTC
*
69453962 AAAATATTTATAAAAATTCT
1 AAAATATTTATAAAAAATCT
*
69453982 AAAATTTTTATTTTAAAAAAT-T
1 AAAATATTTA---TAAAAAATCT
* * *
69454004 -ATATTTTTTTAAAAAAATCT
1 AAAATATTTAT-AAAAAATCT
*
69454024 AAAATATATATAAAAAAT-T
1 AAAATATTTATAAAAAATCT
69454043 AAAA-ACTTTATAAAA
1 AAAATA-TTTATAAAA
69454058 CAATGATTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
18 2 0.03
19 20 0.33
20 17 0.28
21 13 0.22
22 1 0.02
23 7 0.12
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAATATTTATAAAAAATCT
Found at i:69454375 original size:21 final size:21
Alignment explanation
Indices: 69454350--69454389 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
69454340 ACCTTAACTA
**
69454350 AAGTTAAAAGTCAAAACTATC
1 AAGTTAAAAAACAAAACTATC
69454371 AAGTTAAAAAACAAAACTA
1 AAGTTAAAAAACAAAACTA
69454390 CGTTGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.60, C:0.12, G:0.07, T:0.20
Consensus pattern (21 bp):
AAGTTAAAAAACAAAACTATC
Found at i:69456002 original size:33 final size:33
Alignment explanation
Indices: 69455859--69456042 Score: 95
Period size: 33 Copynumber: 5.5 Consensus size: 33
69455849 TGTTTTTATG
* * *
69455859 TAAGATCATAGCTGGGCTATGGCA-TTTTAATGA
1 TAAGACCATAGCTGGGCTATGGCACTATGAAT-A
* * * * * * *
69455892 AAAGACTATAACTGGGTTATGACACTTTGAATT
1 TAAGACCATAGCTGGGCTATGGCACTATGAATA
* * * * **
69455925 TAGGACCAT-GGTGGGACCATGGCAGTATTTATAA
1 TAAGACCATAGCTGGG-CTATGGCACTATGAAT-A
* *
69455959 TTAAGACCATAGCTGGGCTATGGCATTCTGACA-A
1 -TAAGACCATAGCTGGGCTATGGCACTATGA-ATA
* * * *
69455993 TAAGACCATAACTGAGTTATGGCACTATGAATG
1 TAAGACCATAGCTGGGCTATGGCACTATGAATA
*
69456026 TAAGACCATGGCTGGGC
1 TAAGACCATAGCTGGGC
69456043 CTTGGCAATG
Statistics
Matches: 106, Mismatches: 38, Indels: 14
0.67 0.24 0.09
Matches are distributed among these distances:
32 5 0.05
33 71 0.67
34 7 0.07
35 17 0.16
36 6 0.06
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (33 bp):
TAAGACCATAGCTGGGCTATGGCACTATGAATA
Found at i:69456004 original size:101 final size:101
Alignment explanation
Indices: 69455824--69456051 Score: 273
Period size: 101 Copynumber: 2.3 Consensus size: 101
69455814 AATTGACGGA
* * * * *
69455824 TAAGACCATGGTTGGACCATGGCAATGTTTTTATGTAAGATCATAGCTGGGCTATGGCATTTTAA
1 TAAGACCATGGTGGGACCATGGCAATATTTTAATGTAAGACCATAGCTGGGCTATGGCATTCTAA
* * * * *
69455889 TGAAAAGACTATAACTGGGTTATGACACTTTGAATT
66 TCAAAAGACCATAACTGAGTTATGACACTATGAATG
* * *
69455925 TAGGACCATGGTGGGACCATGGCAGTATTTATAAT-TAAGACCATAGCTGGGCTATGGCATTCTG
1 TAAGACCATGGTGGGACCATGGCAATATTT-TAATGTAAGACCATAGCTGGGCTATGGCATTCTA
*
69455989 A-CAATAAGACCATAACTGAGTTATGGCACTATGAATG
65 ATCAA-AAGACCATAACTGAGTTATGACACTATGAATG
*
69456026 TAAGACCATGGCTGGG-CCTTGGCAAT
1 TAAGACCATGG-TGGGACCATGGCAAT
69456052 GCATATGTAC
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
100 2 0.02
101 98 0.92
102 7 0.07
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (101 bp):
TAAGACCATGGTGGGACCATGGCAATATTTTAATGTAAGACCATAGCTGGGCTATGGCATTCTAA
TCAAAAGACCATAACTGAGTTATGACACTATGAATG
Found at i:69458529 original size:34 final size:32
Alignment explanation
Indices: 69458491--69458554 Score: 94
Period size: 31 Copynumber: 1.9 Consensus size: 32
69458481 AATTTAATTT
69458491 AATATTTATCTTATAGATAAGTATTA-ATTAATAG
1 AATATTTATC-T-T-GATAAGTATTATATTAATAG
69458525 AATATTTATCTTGATAAGTATTATATTAAT
1 AATATTTATCTTGATAAGTATTATATTAAT
69458555 TTAATATTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
31 11 0.38
32 7 0.24
33 1 0.03
34 10 0.34
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (32 bp):
AATATTTATCTTGATAAGTATTATATTAATAG
Found at i:69459192 original size:24 final size:24
Alignment explanation
Indices: 69459160--69459207 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
69459150 ATAAGAAGTG
69459160 GGACCTTGACCAGTGACCAGGGTT
1 GGACCTTGACCAGTGACCAGGGTT
69459184 GGACCTTGACCAGTGACCAGGGTT
1 GGACCTTGACCAGTGACCAGGGTT
69459208 CTTTCCCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.33, T:0.21
Consensus pattern (24 bp):
GGACCTTGACCAGTGACCAGGGTT
Found at i:69460682 original size:90 final size:90
Alignment explanation
Indices: 69460578--69460795 Score: 301
Period size: 90 Copynumber: 2.4 Consensus size: 90
69460568 CCAATACAAA
* * * * * * *
69460578 AAACAATTTAATACAAACAAATTCATTTTTGTCTTGCACATGTCATTCACTTTAGTGCAAATAAA
1 AAACAATTTAATACAAACAAATTCATTTCTATCATGCACATGCCATACACTTTAATGCAAAGAAA
*
69460643 TCCATTTCTGTCATGTACAATAACC
66 TCCATTTCTGTCAAGTACAATAACC
**
69460668 AAACAATTTAATACAAACAAATTCATTTCTATCATGCACATGCCATACACTTTAATTTAAAGAAA
1 AAACAATTTAATACAAACAAATTCATTTCTATCATGCACATGCCATACACTTTAATGCAAAGAAA
*
69460733 TCCATTTTTGTCAAGTACAATAACC
66 TCCATTTCTGTCAAGTACAATAACC
* ** *
69460758 AAACAATTTAATACAAAAAAATTTGTTTCTGTCATGCA
1 AAACAATTTAATACAAACAAATTCATTTCTATCATGCA
69460796 TATGACAGAC
Statistics
Matches: 113, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 113 1.00
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.34
Consensus pattern (90 bp):
AAACAATTTAATACAAACAAATTCATTTCTATCATGCACATGCCATACACTTTAATGCAAAGAAA
TCCATTTCTGTCAAGTACAATAACC
Found at i:69460924 original size:11 final size:11
Alignment explanation
Indices: 69460908--69460953 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
69460898 AACTGATTTG
*
69460908 TCATATTTGAT
1 TCATATTTGAA
*
69460919 TCATATTTAAA
1 TCATATTTGAA
*
69460930 TCATATTTGAG
1 TCATATTTGAA
*
69460941 TCATATGTGAA
1 TCATATTTGAA
69460952 TC
1 TC
69460954 CAAAGAAACT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.46
Consensus pattern (11 bp):
TCATATTTGAA
Found at i:69460953 original size:22 final size:22
Alignment explanation
Indices: 69460908--69460953 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
69460898 AACTGATTTG
* *
69460908 TCATATTTGATTCATATTTAAA
1 TCATATTTGAGTCATATGTAAA
*
69460930 TCATATTTGAGTCATATGTGAA
1 TCATATTTGAGTCATATGTAAA
69460952 TC
1 TC
69460954 CAAAGAAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.46
Consensus pattern (22 bp):
TCATATTTGAGTCATATGTAAA
Found at i:69469260 original size:17 final size:18
Alignment explanation
Indices: 69469240--69469275 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
69469230 TAATCTTGTT
69469240 TTAATAAATTAATA-GCA
1 TTAATAAATTAATATGCA
*
69469257 TTAATAATTTAATATGCA
1 TTAATAAATTAATATGCA
69469275 T
1 T
69469276 ATATTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (18 bp):
TTAATAAATTAATATGCA
Found at i:69470454 original size:54 final size:54
Alignment explanation
Indices: 69470372--69470479 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
69470362 CCTTAGAGCG
69470372 AATGGTCTTATTATACTCGATTTTAACTGGAAAGACCATTGATGTGGGAAAAAT
1 AATGGTCTTATTATACTCGATTTTAACTGGAAAGACCATTGATGTGGGAAAAAT
*
69470426 AATGGTCTTATTATACTCGATTTTAACTGGAAAGACCATTGATGTGGTAAAAAT
1 AATGGTCTTATTATACTCGATTTTAACTGGAAAGACCATTGATGTGGGAAAAAT
69470480 CATCCTGAGA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.34
Consensus pattern (54 bp):
AATGGTCTTATTATACTCGATTTTAACTGGAAAGACCATTGATGTGGGAAAAAT
Found at i:69477680 original size:42 final size:43
Alignment explanation
Indices: 69477623--69477748 Score: 139
Period size: 42 Copynumber: 2.9 Consensus size: 43
69477613 AAAGCTCGTA
*
69477623 CAATGTCAACGTCCCAGACGTGGTCTTACATGAAATCA-A-AT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCACAGAT
* * * * *
69477664 ACAATGCCGATGTCCCAGACATGGTTTTACACGTAAATCACAGAT
1 -CAATGCCAACGTCCCAGACGTGGTCTTACATG-AAATCACAGAT
** *
69477709 TGATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACA
1 CAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCACA
69477749 TATCGAAATC
Statistics
Matches: 67, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
42 26 0.39
43 13 0.19
44 26 0.39
45 2 0.03
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCACAGAT
Found at i:69489267 original size:32 final size:30
Alignment explanation
Indices: 69489185--69489275 Score: 96
Period size: 32 Copynumber: 3.0 Consensus size: 30
69489175 CCCTAAAATG
*
69489185 TTAATCCCAA-TC-GATTTTCTTTTCTTCTTC
1 TTAATCCCAATTCATATTTTC-TTTCTT-TTC
*
69489215 TTAATCCCAATTGATATTTTCTTTCTTTTCC
1 TTAATCCCAATTCATATTTTCTTTCTTTT-C
* *
69489246 TTAATCCCTAATTCATCTTTTCTTTTTTTT
1 TTAATCCC-AATTCATATTTTCTTTCTTTT
69489276 TCCCTCTAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
30 12 0.23
31 16 0.31
32 24 0.46
ACGTcount: A:0.18, C:0.23, G:0.02, T:0.57
Consensus pattern (30 bp):
TTAATCCCAATTCATATTTTCTTTCTTTTC
Found at i:69489847 original size:32 final size:30
Alignment explanation
Indices: 69489781--69489855 Score: 96
Period size: 32 Copynumber: 2.4 Consensus size: 30
69489771 TACCCCCCTA
* * *
69489781 AAATTATAAAAATTTAATTTAATTATTTAT
1 AAATTATAAAAATTCAATTTAATCATTTAC
*
69489811 AAATTTTATAAAAATTCAATTTAATCCTTTAC
1 AAA--TTATAAAAATTCAATTTAATCATTTAC
69489843 AAATTATAAAAAT
1 AAATTATAAAAAT
69489856 ATAAATTATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 13 0.33
32 26 0.67
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (30 bp):
AAATTATAAAAATTCAATTTAATCATTTAC
Found at i:69496501 original size:17 final size:17
Alignment explanation
Indices: 69496475--69496507 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
69496465 ACTAGACCTT
69496475 TTATAAAACAACTTAAG
1 TTATAAAACAACTTAAG
*
69496492 TTATAGAACAACTTAA
1 TTATAAAACAACTTAA
69496508 TGGTTGTTCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.12, G:0.06, T:0.30
Consensus pattern (17 bp):
TTATAAAACAACTTAAG
Found at i:69506767 original size:23 final size:22
Alignment explanation
Indices: 69506740--69506803 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 22
69506730 TGAAAATTGG
69506740 AAATAGAAATAAAAATAAAAGAA
1 AAATA-AAATAAAAATAAAAGAA
*
69506763 AAATAAAA-ACAAAAGGAAAAGAA
1 AAATAAAATA-AAAA-TAAAAGAA
* *
69506786 AAATAAAGTAGAAATAAA
1 AAATAAAATAAAAATAAA
69506804 TGGACTCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
21 1 0.03
22 10 0.29
23 22 0.65
24 1 0.03
ACGTcount: A:0.77, C:0.02, G:0.11, T:0.11
Consensus pattern (22 bp):
AAATAAAATAAAAATAAAAGAA
Found at i:69506768 original size:17 final size:17
Alignment explanation
Indices: 69506746--69506792 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
69506736 TTGGAAATAG
69506746 AAATAAAAATAAAAGAA
1 AAATAAAAATAAAAGAA
* *
69506763 AAATAAAAACAAAAGGA
1 AAATAAAAATAAAAGAA
*
69506780 AAAGAAAAATAAA
1 AAATAAAAATAAA
69506793 GTAGAAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.81, C:0.02, G:0.09, T:0.09
Consensus pattern (17 bp):
AAATAAAAATAAAAGAA
Found at i:69510643 original size:40 final size:40
Alignment explanation
Indices: 69510599--69510679 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
69510589 ATATTTAGAG
*
69510599 ATATTACCTGTTCGTTTGCATTTATCACAAGAAGTAACAT
1 ATATTACCTGTTCGTTGGCATTTATCACAAGAAGTAACAT
69510639 ATATTACCTGTTCGTTGGCATTTATCACAAGAAGTAACAT
1 ATATTACCTGTTCGTTGGCATTTATCACAAGAAGTAACAT
69510679 A
1 A
69510680 CCTGTTGGCG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (40 bp):
ATATTACCTGTTCGTTGGCATTTATCACAAGAAGTAACAT
Found at i:69517646 original size:87 final size:86
Alignment explanation
Indices: 69517497--69517661 Score: 210
Period size: 87 Copynumber: 1.9 Consensus size: 86
69517487 AAATTTAAAT
* * * *
69517497 TTGGTGAATTCATAAAGCCTGTCTCACTAGTACCACCCAAACTCTGGGATATGAACTCATTAAGA
1 TTGGTGAATTCATAAAGCCTGTCTCAATAGGACCACCCAAACCCTGGCATATGAACTCATTAAGA
69517562 GTAATAAACTCAACCTCACATG
66 GTAA-AAACTCAACCTCACATG
* *
69517584 TTGGTGAATTCATCAAGTCC-GTCTCAATAGGACCACCTAAACCCT-GCATTATGAA-TCTATTA
1 TTGGTGAATTCATAAAG-CCTGTCTCAATAGGACCACCCAAACCCTGGCA-TATGAACTC-ATTA
*
69517646 AGAGTAAGAACTCAAC
63 AGAGTAAAAACTCAAC
69517662 TTTATGCATG
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
86 12 0.18
87 54 0.79
88 2 0.03
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (86 bp):
TTGGTGAATTCATAAAGCCTGTCTCAATAGGACCACCCAAACCCTGGCATATGAACTCATTAAGA
GTAAAAACTCAACCTCACATG
Done.