Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 202 of 290
Found at i:69521498 original size:28 final size:28
Alignment explanation
Indices: 69521458--69521514 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
69521448 CCCTTTTATG
69521458 CGCACACCTACACAACATAACATAGCAC
1 CGCACACCTACACAACATAACATAGCAC
69521486 CGCACACCTACACAACATAACATAGCAC
1 CGCACACCTACACAACATAACATAGCAC
69521514 C
1 C
69521515 AATCCAAGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.42, C:0.40, G:0.07, T:0.11
Consensus pattern (28 bp):
CGCACACCTACACAACATAACATAGCAC
Found at i:69522707 original size:45 final size:45
Alignment explanation
Indices: 69522651--69522740 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
69522641 TTTCTGCCAT
* **
69522651 TAGGTATCAAAATATGCAAATATCTATCATGGGTAAAAATTTAGA
1 TAGGCATCAAAATACACAAATATCTATCATGGGTAAAAATTTAGA
69522696 TAGGCATCAAAATACACAAATATCTATCATGGGTAAAAATTTAGA
1 TAGGCATCAAAATACACAAATATCTATCATGGGTAAAAATTTAGA
69522741 CTTTGATTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (45 bp):
TAGGCATCAAAATACACAAATATCTATCATGGGTAAAAATTTAGA
Found at i:69537325 original size:9 final size:9
Alignment explanation
Indices: 69537311--69537386 Score: 71
Period size: 9 Copynumber: 8.1 Consensus size: 9
69537301 TTTAAGGAAA
*
69537311 TTATGTGAG
1 TTATGTAAG
69537320 TTATGTAAGTTG
1 TTATGTAA---G
*
69537332 TTATGTAAA
1 TTATGTAAG
69537341 TTATGTAAG
1 TTATGTAAG
* *
69537350 TTATATGAG
1 TTATGTAAG
69537359 TTATGTAAG
1 TTATGTAAG
*
69537368 TTATGTAAT
1 TTATGTAAG
*
69537377 TTATTTAAG
1 TTATGTAAG
69537386 T
1 T
69537387 AATGATCAAT
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
9 45 0.83
12 9 0.17
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.49
Consensus pattern (9 bp):
TTATGTAAG
Found at i:69540755 original size:84 final size:84
Alignment explanation
Indices: 69540608--69540871 Score: 275
Period size: 84 Copynumber: 3.2 Consensus size: 84
69540598 TTTGGGGGGA
* * *
69540608 ATAGCGCCACTAATTCCTAAACCGTGCCACATAAAATGACGTAGTTTTAATTCGGTTTCTCATAT
1 ATAGCGCCACTAATTCCTAAACCGCGCCACATAAAACGACGTAGTTTTAATTCGATTTCTCATAT
*
69540673 TCTTAGTGGCGTTTATAAG
66 TATTAGTGGCGTTTATAAG
* * * * *
69540692 GTAGCGCCACTAATTCCTAAATCGCGCCACATAAAACGATGTAGTTTTCATTCGATTTTTCATAT
1 ATAGCGCCACTAATTCCTAAACCGCGCCACATAAAACGACGTAGTTTTAATTCGATTTCTCATAT
69540757 TATTAGTGGCGTTTATAAG
66 TATTAGTGGCGTTTATAAG
* * * * * * * * *
69540776 ATAGCACCACTAAATCC-ACTACC-CGCGAAATAAAACGACG-ACGTTTCAATACAATTTCTTAT
1 ATAGCGCCACTAATTCCTA-AACCGCGCCACATAAAACGACGTA-GTTTTAATTCGATTTCTCAT
* * *
69540838 ACTT-TTAGCGGCGTTTATGAC
64 A-TTATTAGTGGCGTTTATAAG
*
69540859 CTAGCGCCACTAA
1 ATAGCGCCACTAA
69540872 CTCCACTGTC
Statistics
Matches: 149, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
82 1 0.01
83 55 0.37
84 93 0.62
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (84 bp):
ATAGCGCCACTAATTCCTAAACCGCGCCACATAAAACGACGTAGTTTTAATTCGATTTCTCATAT
TATTAGTGGCGTTTATAAG
Found at i:69541097 original size:15 final size:15
Alignment explanation
Indices: 69541077--69541107 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
69541067 AATCCCAAAA
69541077 CCAATACACTAAACC
1 CCAATACACTAAACC
*
69541092 CCAATACCCTAAACC
1 CCAATACACTAAACC
69541107 C
1 C
69541108 TAGAGACTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.45, G:0.00, T:0.13
Consensus pattern (15 bp):
CCAATACACTAAACC
Found at i:69541109 original size:7 final size:7
Alignment explanation
Indices: 69541085--69541191 Score: 92
Period size: 7 Copynumber: 15.1 Consensus size: 7
69541075 AACCAATACA
69541085 CTAAACC
1 CTAAACC
*
69541092 CCAATACC
1 CTAA-ACC
69541100 CTAAACC
1 CTAAACC
* **
69541107 CTAGAGA
1 CTAAACC
69541114 CTAAACC
1 CTAAACC
69541121 CTAAA-C
1 CTAAACC
* *
69541127 CAAATACA
1 CTAA-ACC
69541135 C-AATACC
1 CTAA-ACC
69541142 CTAAACC
1 CTAAACC
69541149 CTAAACC
1 CTAAACC
69541156 CTAAACC
1 CTAAACC
69541163 CTAAACC
1 CTAAACC
* **
69541170 CTATAGA
1 CTAAACC
69541177 CTAAACC
1 CTAAACC
69541184 CTAAACC
1 CTAAACC
69541191 C
1 C
69541192 AATACCCAAT
Statistics
Matches: 79, Mismatches: 17, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
6 4 0.05
7 66 0.84
8 9 0.11
ACGTcount: A:0.44, C:0.38, G:0.03, T:0.15
Consensus pattern (7 bp):
CTAAACC
Found at i:69541123 original size:21 final size:21
Alignment explanation
Indices: 69541097--69541251 Score: 116
Period size: 21 Copynumber: 7.4 Consensus size: 21
69541087 AAACCCCAAT
* *
69541097 ACCCTAAACCCTAGAGACTAA
1 ACCCTAAACCCTATACACTAA
**
69541118 ACCCTAAACCAAATACAC-AA
1 ACCCTAAACCCTATACACTAA
* *
69541138 TACCCTAAACCCTAAACCCTAA
1 -ACCCTAAACCCTATACACTAA
*
69541160 ACCCTAAACCCTATAGACTAA
1 ACCCTAAACCCTATACACTAA
* *
69541181 ACCCTAAACCCAATAC-CCAA
1 ACCCTAAACCCTATACACTAA
*** * *
69541201 TTTCTAAACCTTATAAACTAA
1 ACCCTAAACCCTATACACTAA
** * *
69541222 ATTCTAAACCCAATACCCTAA
1 ACCCTAAACCCTATACACTAA
*
69541243 ACCTTAAAC
1 ACCCTAAAC
69541252 TTAAATTTTA
Statistics
Matches: 102, Mismatches: 29, Indels: 6
0.74 0.21 0.04
Matches are distributed among these distances:
20 15 0.15
21 85 0.83
22 2 0.02
ACGTcount: A:0.45, C:0.34, G:0.02, T:0.19
Consensus pattern (21 bp):
ACCCTAAACCCTATACACTAA
Found at i:69541140 original size:42 final size:42
Alignment explanation
Indices: 69541093--69541191 Score: 128
Period size: 42 Copynumber: 2.4 Consensus size: 42
69541083 CACTAAACCC
* *
69541093 CAATACCCTAAACCCTAGAGACTAAACCCTAAACCAAATACA
1 CAATACCCTAAACCCTAAACACTAAACCCTAAACCAAATACA
* ** *
69541135 CAATACCCTAAACCCTAAACCCTAAACCCTAAACCCTATAGA
1 CAATACCCTAAACCCTAAACACTAAACCCTAAACCAAATACA
69541177 CTAA-ACCCTAAACCC
1 C-AATACCCTAAACCC
69541192 AATACCCAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
42 48 0.96
43 2 0.04
ACGTcount: A:0.44, C:0.37, G:0.03, T:0.15
Consensus pattern (42 bp):
CAATACCCTAAACCCTAAACACTAAACCCTAAACCAAATACA
Found at i:69541651 original size:15 final size:15
Alignment explanation
Indices: 69541633--69541696 Score: 51
Period size: 15 Copynumber: 4.4 Consensus size: 15
69541623 AAAATTTATT
* *
69541633 TTTAAGATTTTAGGG
1 TTTAAGATTTAAGAG
*
69541648 TTTATGATTTAAGAG
1 TTTAAGATTTAAGAG
* *
69541663 TTTAGGATTT-ATAG
1 TTTAAGATTTAAGAG
* *
69541677 TTTAAGGTTTGAGA-
1 TTTAAGATTTAAGAG
69541691 TTTAAG
1 TTTAAG
69541697 GCCTATAGTT
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
14 17 0.43
15 23 0.57
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (15 bp):
TTTAAGATTTAAGAG
Found at i:69541661 original size:22 final size:22
Alignment explanation
Indices: 69541633--69541694 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
69541623 AAAATTTATT
* *
69541633 TTTAAGATTTTAGGGTTTAT-G
1 TTTAAGAGTTTAGGATTTATAG
69541654 ATTTAAGAGTTTAGGATTTATAG
1 -TTTAAGAGTTTAGGATTTATAG
69541677 TTTAAG-GTTT-GAGATTTA
1 TTTAAGAGTTTAG-GATTTA
69541695 AGGCCTATAG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
20 1 0.03
21 10 0.28
22 24 0.67
23 1 0.03
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.48
Consensus pattern (22 bp):
TTTAAGAGTTTAGGATTTATAG
Found at i:69542984 original size:18 final size:18
Alignment explanation
Indices: 69542961--69542998 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
69542951 AGAAATGAGA
69542961 AATAAAAATAAAGAACAC
1 AATAAAAATAAAGAACAC
69542979 AATAAAAATAAAGAACAC
1 AATAAAAATAAAGAACAC
69542997 AA
1 AA
69542999 CATATTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.74, C:0.11, G:0.05, T:0.11
Consensus pattern (18 bp):
AATAAAAATAAAGAACAC
Found at i:69545889 original size:33 final size:32
Alignment explanation
Indices: 69545832--69545893 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
69545822 CAAATAACAA
*
69545832 CAACAAAATAGTAGAAATATAATAGTGAAATGG
1 CAACAAAATAGTAGAAATACAATAG-GAAATGG
*
69545865 CAACAAAATAGTGAGGAA-ACAATAGGAAA
1 CAACAAAATAGT-AGAAATACAATAGGAAA
69545894 ACAATAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 4 0.15
33 18 0.69
34 4 0.15
ACGTcount: A:0.56, C:0.08, G:0.19, T:0.16
Consensus pattern (32 bp):
CAACAAAATAGTAGAAATACAATAGGAAATGG
Found at i:69551769 original size:18 final size:19
Alignment explanation
Indices: 69551738--69551773 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
69551728 AATATAATGC
69551738 AAATATATATATAATATAA
1 AAATATATATATAATATAA
69551757 AAATATA-ATATAATATA
1 AAATATATATATAATATA
69551774 TATACATGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
AAATATATATATAATATAA
Found at i:69552178 original size:22 final size:21
Alignment explanation
Indices: 69552148--69552213 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
69552138 TACAAATTAA
69552148 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
69552170 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
69552191 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
69552210 ATCT
1 ATCT
69552214 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:69552200 original size:19 final size:19
Alignment explanation
Indices: 69552165--69552243 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
69552155 AGATTACAAG
69552165 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
69552186 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
69552205 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
69552222 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
69552241 ATC
1 ATC
69552244 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:69552207 original size:14 final size:15
Alignment explanation
Indices: 69552187--69552243 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
69552177 AGATTGCATA
69552187 TCATATCTAAGATTG
1 TCATATCTAAGATTG
69552202 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
69552221 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
69552238 -CATATC
1 TCATATC
69552244 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:69552229 original size:36 final size:39
Alignment explanation
Indices: 69552165--69552243 Score: 128
Period size: 36 Copynumber: 2.1 Consensus size: 39
69552155 AGATTACAAG
69552165 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTG-ATATCATATCTAAGATTGCAT
69552205 ATCATATC-T-AAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
69552241 ATC
1 ATC
69552244 CTTAAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
39 1 0.03
40 8 0.21
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (39 bp):
ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
Found at i:69561789 original size:27 final size:27
Alignment explanation
Indices: 69561750--69561927 Score: 239
Period size: 27 Copynumber: 6.6 Consensus size: 27
69561740 CCAGATTGAT
* *
69561750 AAATGATTATTTTGCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
*
69561777 AAATGATTGTTTTGCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
* * *
69561804 AAATGACTATTTTGCCCTTATGGGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
* *
69561831 AAATGATTGTTTTGCCCTCACGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
*
69561858 AAATGAGTGTTTTGCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
* * *
69561885 AGATGACTGTTTTGCCCTTATAAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
*
69561912 AGATGACTGTTTTGCC
1 AAATGACTGTTTTGCC
69561928 TTTTGTGATG
Statistics
Matches: 135, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 135 1.00
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTCATGAGGTA
Found at i:69561885 original size:81 final size:81
Alignment explanation
Indices: 69561750--69561927 Score: 275
Period size: 81 Copynumber: 2.2 Consensus size: 81
69561740 CCAGATTGAT
* * *
69561750 AAATGATTATTTTGCCCTCATGAGGTAAAATGATTGTTTTGCCCTCATGAGGTAAAATGACTATT
1 AAATGATTGTTTTGCCCTCACGAGGTAAAATGAGTGTTTTGCCCTCATGAGGTAAAATGACTATT
**
69561815 TTGCCCTTATGGGGTA
66 TTGCCCTTATAAGGTA
* *
69561831 AAATGATTGTTTTGCCCTCACGAGGTAAAATGAGTGTTTTGCCCTCATGAGGTAAGATGACTGTT
1 AAATGATTGTTTTGCCCTCACGAGGTAAAATGAGTGTTTTGCCCTCATGAGGTAAAATGACTATT
69561896 TTGCCCTTATAAGGTA
66 TTGCCCTTATAAGGTA
* *
69561912 AGATGACTGTTTTGCC
1 AAATGATTGTTTTGCC
69561928 TTTTGTGATG
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 88 1.00
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (81 bp):
AAATGATTGTTTTGCCCTCACGAGGTAAAATGAGTGTTTTGCCCTCATGAGGTAAAATGACTATT
TTGCCCTTATAAGGTA
Found at i:69562272 original size:18 final size:18
Alignment explanation
Indices: 69562249--69562293 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
69562239 GACTTGTATT
69562249 CTGTTACTGCACTGATTA
1 CTGTTACTGCACTGATTA
*
69562267 CTGTTACTGCACTGTTTA
1 CTGTTACTGCACTGATTA
*
69562285 TTGTTACTG
1 CTGTTACTG
69562294 TATTGGGCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.44
Consensus pattern (18 bp):
CTGTTACTGCACTGATTA
Found at i:69565258 original size:26 final size:22
Alignment explanation
Indices: 69565201--69565245 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
69565191 ACTATTGATC
69565201 GTAGTCCGTATGCCTAAACGTG
1 GTAGTCCGTATGCCTAAACGTG
69565223 GTAGTCCGTATGCCTAAACGTG
1 GTAGTCCGTATGCCTAAACGTG
69565245 G
1 G
69565246 GTGTTAGATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (22 bp):
GTAGTCCGTATGCCTAAACGTG
Found at i:69565584 original size:27 final size:27
Alignment explanation
Indices: 69565547--69565753 Score: 224
Period size: 27 Copynumber: 7.7 Consensus size: 27
69565537 CCAGATTGAT
*
69565547 AAATGACTGTTTTTCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
* *
69565574 AAATGATTGTTTTGCCCTAATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
*
69565601 AAATGACTATTTTGCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
* *
69565628 AAATGACTGTTTTGCCCTTAT-ATAGTA
1 AAATGACTGTTTTGCCCTCATGA-GGTA
* *
69565655 AAATGATTGTTTTTCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
* * *
69565682 AAATGGCTATTTAT-CCCTTAAAT-A-GTA
1 AAATGACTGTTT-TGCCC-T-CATGAGGTA
* * *
69565709 AGATGACTGCTTTACCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTCATGAGGTA
69565736 AAATGACTGTTTTGCCCT
1 AAATGACTGTTTTGCCCT
69565754 GCTTCGTTGC
Statistics
Matches: 147, Mismatches: 25, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
25 2 0.01
26 4 0.03
27 135 0.92
28 4 0.03
29 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTCATGAGGTA
Found at i:69565619 original size:54 final size:53
Alignment explanation
Indices: 69565547--69565753 Score: 274
Period size: 54 Copynumber: 3.8 Consensus size: 53
69565537 CCAGATTGAT
*
69565547 AAATGACTGTTTTTCCCTCATGAGGTAAAATGATTGTTTTGCCC-TAATGAGGTA
1 AAATGACTGTTTTTCCCTCATGAGGTAAAATGACTGTTTTGCCCTTAAT-A-GTA
* *
69565601 AAATGACTATTTTGCCCTCATGAGGTAAAATGACTGTTTTGCCCTTATATAGTA
1 AAATGACTGTTTTTCCCTCATGAGGTAAAATGACTGTTTTGCCCTTA-ATAGTA
* * *
69565655 AAATGATTGTTTTTCCCTCATGAGGTAAAATGGCTATTTAT-CCCTTAAATAGTA
1 AAATGACTGTTTTTCCCTCATGAGGTAAAATGACTGTTT-TGCCCTT-AATAGTA
* * *
69565709 AGATGACTGCTTTACCCTCATGAGGTAAAATGACTGTTTTGCCCT
1 AAATGACTGTTTTTCCCTCATGAGGTAAAATGACTGTTTTGCCCT
69565754 GCTTCGTTGC
Statistics
Matches: 134, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
53 1 0.01
54 126 0.94
55 5 0.04
56 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (53 bp):
AAATGACTGTTTTTCCCTCATGAGGTAAAATGACTGTTTTGCCCTTAATAGTA
Found at i:69565715 original size:81 final size:81
Alignment explanation
Indices: 69565547--69565753 Score: 251
Period size: 81 Copynumber: 2.6 Consensus size: 81
69565537 CCAGATTGAT
*
69565547 AAATGACTGTTTTTCCCTCATGAGGTAAAATGATTGTTTTGCCCTAATGAGGTAAAATGACTATT
1 AAATGACTGTTTTACCCTCATGAGGTAAAATGATTGTTTTGCCCTAATGAGGTAAAATGACTATT
*
69565612 TTGCCCTCATGAGGTA
66 TTGCCCTAATGAGGTA
* * * * * *
69565628 AAATGACTGTTTTGCCCTTAT-ATAGTAAAATGATTGTTTTTCCCTCATGAGGTAAAATGGCTAT
1 AAATGACTGTTTTACCCTCATGA-GGTAAAATGATTGTTTTGCCCTAATGAGGTAAAATGACTAT
69565692 TTAT-CCCTTAAAT-A-GTA
65 TT-TGCCC-T-AATGAGGTA
* * *
69565709 AGATGACTGCTTTACCCTCATGAGGTAAAATGACTGTTTTGCCCT
1 AAATGACTGTTTTACCCTCATGAGGTAAAATGATTGTTTTGCCCT
69565754 GCTTCGTTGC
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
80 1 0.01
81 100 0.93
82 4 0.04
83 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (81 bp):
AAATGACTGTTTTACCCTCATGAGGTAAAATGATTGTTTTGCCCTAATGAGGTAAAATGACTATT
TTGCCCTAATGAGGTA
Found at i:69566162 original size:18 final size:18
Alignment explanation
Indices: 69566123--69566164 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
69566113 TTGTATTCTG
*
69566123 TTACTGCACTGATTACTG
1 TTACTGCACTGATTACTA
*
69566141 TTACTGCACT-ATTTATTA
1 TTACTGCACTGA-TTACTA
69566159 TTACTG
1 TTACTG
69566165 TATTGGGCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.24, C:0.19, G:0.12, T:0.45
Consensus pattern (18 bp):
TTACTGCACTGATTACTA
Found at i:69576546 original size:51 final size:50
Alignment explanation
Indices: 69576486--69576673 Score: 209
Period size: 51 Copynumber: 3.7 Consensus size: 50
69576476 TGGCTTGCAT
* * * *
69576486 ATAGTACCACCCTTGTAGT-CAAAGCTACCTTATTCACAAAGTGACCTTTATC
1 ATAGTACCACACTTGT-GTCCAAAGCTA-TTTATTCACAAAGTGGCCTTCA-C
*
69576538 -TAGTACCACACTTGTGTCCAAAGTTATTTTATTCACAAAGTGGCCTTCAC
1 ATAGTACCACACTTGTGTCCAAAGCTA-TTTATTCACAAAGTGGCCTTCAC
* *
69576588 ATAATACCGCACTTGTGTCCAAAGCTATTATATTCACAAAGTGGCCTTCAC
1 ATAGTACCACACTTGTGTCCAAAGCTATT-TATTCACAAAGTGGCCTTCAC
* * * *
69576639 ATAGTACTAGATTTGTTTCCAAAGCTATTTTATTC
1 ATAGTACCACACTTGTGTCCAAAGCTA-TTTATTC
69576674 CTAAGGTTCA
Statistics
Matches: 117, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
50 5 0.04
51 110 0.94
52 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (50 bp):
ATAGTACCACACTTGTGTCCAAAGCTATTTATTCACAAAGTGGCCTTCAC
Found at i:69576766 original size:28 final size:24
Alignment explanation
Indices: 69576709--69576808 Score: 110
Period size: 24 Copynumber: 4.0 Consensus size: 24
69576699 ACGTAGGACA
69576709 ATGCCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
69576733 ATGCCATGGACTTATTTCATTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
69576757 CACATTGCCATGGACTTATTTCACTTAA
1 ---A-TGCCATGGACTTATTTCACTTAG
* ** *
69576785 ATGTCATGTTCTTGTTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
69576809 CACAATGTCA
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
24 41 0.64
25 1 0.02
27 1 0.02
28 21 0.33
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (24 bp):
ATGCCATGGACTTATTTCACTTAG
Found at i:69576766 original size:52 final size:52
Alignment explanation
Indices: 69576710--69576812 Score: 152
Period size: 52 Copynumber: 2.0 Consensus size: 52
69576700 CGTAGGACAA
* *
69576710 TGCCATGGACTTATTTCACTTAGATGCCATGGACTTATTTCATTTAGCACAT
1 TGCCATGGACTTATTTCACTTAAATGCCATGGACTTATTTCACTTAGCACAT
* ** *
69576762 TGCCATGGACTTATTTCACTTAAATGTCATGTTCTTGTTTCACTTAGCACA
1 TGCCATGGACTTATTTCACTTAAATGCCATGGACTTATTTCACTTAGCACA
69576813 ATGTCATATC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (52 bp):
TGCCATGGACTTATTTCACTTAAATGCCATGGACTTATTTCACTTAGCACAT
Found at i:69578083 original size:32 final size:30
Alignment explanation
Indices: 69578014--69578083 Score: 79
Period size: 32 Copynumber: 2.3 Consensus size: 30
69578004 TCCTTACATA
69578014 TTGAAAC-TTAGATTATGAAACTATAAACT
1 TTGAAACTTTAGATTATGAAACTATAAACT
* * *
69578043 GTGAAAACTTTAAGATTATGAAAACTATAGATT
1 TTG-AAACTTT-AGATTATG-AAACTATAAACT
69578076 TTGAAACT
1 TTGAAACT
69578084 ATAGTGAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
29 2 0.06
30 4 0.12
31 2 0.06
32 13 0.39
33 12 0.36
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (30 bp):
TTGAAACTTTAGATTATGAAACTATAAACT
Found at i:69578084 original size:15 final size:15
Alignment explanation
Indices: 69578015--69578087 Score: 67
Period size: 15 Copynumber: 4.7 Consensus size: 15
69578005 CCTTACATAT
69578015 TGAAACT-TAGATTA
1 TGAAACTATAGATTA
* * *
69578029 TGAAACTATAAACTG
1 TGAAACTATAGATTA
*
69578044 TGAAAACTTTAAGATTA
1 TG-AAACTAT-AGATTA
*
69578061 TGAAAACTATAGATTT
1 TG-AAACTATAGATTA
69578077 TGAAACTATAG
1 TGAAACTATAG
69578088 TGAAACTATG
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
14 7 0.15
15 15 0.32
16 13 0.28
17 12 0.26
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (15 bp):
TGAAACTATAGATTA
Found at i:69592288 original size:15 final size:15
Alignment explanation
Indices: 69592268--69592308 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
69592258 ATAATGCTGA
69592268 TTTTGAATTTGAATT
1 TTTTGAATTTGAATT
69592283 TTTTGAATTTGAATT
1 TTTTGAATTTGAATT
*
69592298 TTATGAATTTG
1 TTTTGAATTTG
69592309 TATAAGTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.59
Consensus pattern (15 bp):
TTTTGAATTTGAATT
Found at i:69603774 original size:26 final size:27
Alignment explanation
Indices: 69603732--69603798 Score: 109
Period size: 26 Copynumber: 2.5 Consensus size: 27
69603722 ACAGCTAAGA
69603732 AATAGCCTTTGTGGAAAACTCTGAAAG
1 AATAGCCTTTGTGGAAAACTCTGAAAG
69603759 AATAGCC-TTGTGGAAAACTCTGAAAG
1 AATAGCCTTTGTGGAAAACTCTGAAAG
* *
69603785 AATAACTTTTGTGG
1 AATAGCCTTTGTGG
69603799 CGTATTATGA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 24 0.65
27 13 0.35
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.28
Consensus pattern (27 bp):
AATAGCCTTTGTGGAAAACTCTGAAAG
Found at i:69605368 original size:21 final size:20
Alignment explanation
Indices: 69605342--69605380 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
69605332 GATTATTTTG
69605342 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATAG-TTATGA
*
69605363 ATGTTTGATGATAGTTAT
1 ATGTTTAATGATAGTTAT
69605381 ACAAGTTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAGTTATGA
Found at i:69606030 original size:48 final size:48
Alignment explanation
Indices: 69605936--69606030 Score: 136
Period size: 48 Copynumber: 2.0 Consensus size: 48
69605926 ATGTCATTAG
* * *
69605936 GATCTTCATTGATTTAGCTTCGGGCCATGATATTAGCACTTTGGGTGT
1 GATCTTCATTGATTTAGCTTCGAGCCATGATATTAGCACCTAGGGTGT
* * *
69605984 GATCTTCATTGATTTGGCTTCGAGCCATGATATTGGCGCCTAGGGTG
1 GATCTTCATTGATTTAGCTTCGAGCCATGATATTAGCACCTAGGGTG
69606031 CAAGACTCCC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.37
Consensus pattern (48 bp):
GATCTTCATTGATTTAGCTTCGAGCCATGATATTAGCACCTAGGGTGT
Found at i:69619932 original size:21 final size:21
Alignment explanation
Indices: 69619908--69619958 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
69619898 GGGAAGTACC
69619908 AAGATGTACAACGATTTAAAG
1 AAGATGTACAACGATTTAAAG
69619929 AAGATGTACAACGATTTAAAG
1 AAGATGTACAACGATTTAAAG
69619950 AAGATGTAC
1 AAGATGTAC
69619959 TGGTGGAGCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.24
Consensus pattern (21 bp):
AAGATGTACAACGATTTAAAG
Found at i:69627795 original size:20 final size:20
Alignment explanation
Indices: 69627772--69627811 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
69627762 TAAATGAGTG
69627772 TTACAATGAATAAACTATGC
1 TTACAATGAATAAACTATGC
69627792 TTACAATGAATAAACTATGC
1 TTACAATGAATAAACTATGC
69627812 CGTATATGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (20 bp):
TTACAATGAATAAACTATGC
Found at i:69628581 original size:43 final size:44
Alignment explanation
Indices: 69628518--69628601 Score: 125
Period size: 43 Copynumber: 1.9 Consensus size: 44
69628508 ATCGAAATAT
*
69628518 GATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCAGTGAGAC
1 GATATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGAC
* * *
69628562 GATA-TCGGGCTTTGAGCCTAGTAGGCTATAATGCCGGTGA
1 GATATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCAGTGA
69628602 AATGAAATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 32 0.89
44 4 0.11
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (44 bp):
GATATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGAC
Found at i:69628947 original size:38 final size:38
Alignment explanation
Indices: 69628882--69629346 Score: 624
Period size: 38 Copynumber: 12.1 Consensus size: 38
69628872 ATTTGATGTG
* *
69628882 TATCCGGGATTAAAGACCCGCAGGCTTCGTGTTGGTAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
* *
69628922 TATCCGGGTTAAATCCCACAGGCTTCGTACTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* *
69628960 TATCTGGGTTAAATCCCACAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * *
69628998 TATCCAGGCTTAAAGACCCGCAGGCTTTGTGCTGGTATTA
1 TATCC-GGGTTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
* *
69629038 TATCCGGGTTAAATCCCGCAGGCTTTGTACTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
69629076 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
69629114 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * * *
69629152 TATCTGGGCTTAAAGACCCGCAGGCTTTGGGCTGGTATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
* *
69629192 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTGATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
69629230 TATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* *
69629268 TATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * * *
69629306 TATCCGGGTTAAATCCTGCAGGCCTAGTACTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
69629344 TAT
1 TAT
69629347 TCAGGCCTTT
Statistics
Matches: 380, Mismatches: 41, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
38 290 0.76
39 29 0.08
40 61 0.16
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:69629086 original size:116 final size:114
Alignment explanation
Indices: 69628882--69629346 Score: 624
Period size: 116 Copynumber: 4.0 Consensus size: 114
69628872 ATTTGATGTG
* *
69628882 TATCCGGGATTAAAGACCCGCAGGCTTCGTGTTGGTAATATATCCGGGTTAAATCCCACAGGCTT
1 TATCCGGG-TTAAA-ACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
* *
69628947 CGTACTGGTAATATATCTGGGTTAAATCCCACAGGCTTCGTGCTGGTAATA
64 CGTACTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * *
69628998 TATCCAGGCTTAAAGACCCGCAGGCTTTGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTT
1 TATCC-GGGTTAAA-ACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
*
69629063 TGTACTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
64 CGTACTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * *
69629114 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCTGGGCTTAAAGACCCGCAGGCTT
1 TATCCGGGTTAAAACCCGCAGGCTTCGTGCTGGTAATATATCCGGG-TTAAA-TCCCGCAGGCTT
* ** * * *
69629179 TGGGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTGATA
64 CGTACTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * *
69629230 TATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG
1 TATCCGGGTTAAAACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
* * * * * * *
69629295 TGCTGGTATTATATCCGGGTTAAATCCTGCAGGCCTAGTACTGGTATTA
66 TACTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
69629344 TAT
1 TAT
69629347 TCAGGCCTTT
Statistics
Matches: 312, Mismatches: 34, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
114 83 0.27
115 17 0.05
116 210 0.67
117 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.31
Consensus pattern (114 bp):
TATCCGGGTTAAAACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
TACTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:69629178 original size:154 final size:154
Alignment explanation
Indices: 69628882--69629346 Score: 709
Period size: 154 Copynumber: 3.0 Consensus size: 154
69628872 ATTTGATGTG
* * *
69628882 TATCCGGGATTAAAGACCCGCAGGCTTCGTGTTGGTAATATATCCGGGTTAAATCCCACAGGCTT
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
* * *
69628947 CGTACTGGTAATATATCTGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCCAGGCTTAAA
64 CGTGCTGGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCCGGGCTTAAA
69629012 GACCCGCAGGCTTTGTGCTGGTATTA
129 GACCCGCAGGCTTTGTGCTGGTATTA
* *
69629038 TATCCGGGTTAAATCCCGCAGGCTTTGTACTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
*
69629103 TGCTGGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCTGGGCTTAAAGA
66 TGCTGGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGA
*
69629168 CCCGCAGGCTTTGGGCTGGTATTA
131 CCCGCAGGCTTTGTGCTGGTATTA
* * *
69629192 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTGATATATCCGGGTTAAATCCCGTAGGCTTCG
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
** * *
69629257 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATCCGGG-TTAAA-T
66 TGCTGGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGA
* * * *
69629320 CCTGCAGGCCTAGTACTGGTATTA
131 CCCGCAGGCTTTGTGCTGGTATTA
69629344 TAT
1 TAT
69629347 TCAGGCCTTT
Statistics
Matches: 284, Mismatches: 25, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
152 22 0.08
153 5 0.02
154 244 0.86
155 5 0.02
156 8 0.03
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.31
Consensus pattern (154 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
TGCTGGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGA
CCCGCAGGCTTTGTGCTGGTATTA
Found at i:69629399 original size:45 final size:45
Alignment explanation
Indices: 69629343--69629457 Score: 146
Period size: 45 Copynumber: 2.6 Consensus size: 45
69629333 TACTGGTATT
* * * *
69629343 ATATTCAGGCCTTTGAGCCTAGCAGGCTATTATGCAGATGAGAT-
1 ATATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCAGATGACATG
*
69629387 ACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGATGACATG
1 A-TATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCAGATGACATG
*
69629433 ATA-TCGAGCC-TTGAGCCTAGTAGGC
1 ATATTCGGGCCTTTGAGCCTAGTAGGC
69629458 GAAATACCGG
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
43 15 0.24
44 7 0.11
45 40 0.63
46 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (45 bp):
ATATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCAGATGACATG
Found at i:69630459 original size:21 final size:20
Alignment explanation
Indices: 69630417--69630463 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
69630407 GTATCGATTC
* **
69630417 GGTATCGATACTTTTCTTAA
1 GGTATCGATAATTTTCCAAA
69630437 GGTATCGATAAATTTTCCAAA
1 GGTATCGAT-AATTTTCCAAA
69630458 GGTATC
1 GGTATC
69630464 AATATTCTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (20 bp):
GGTATCGATAATTTTCCAAA
Found at i:69630906 original size:38 final size:39
Alignment explanation
Indices: 69630864--69630954 Score: 100
Period size: 38 Copynumber: 2.4 Consensus size: 39
69630854 TTGTTTTTCT
69630864 TTAAGAGAGGGTT-TATTCTTAAG-GTTT-GGGTAAAAATC
1 TTAAGAGA-GGTTGTA-TCTTAAGAGTTTGGGGTAAAAATC
* * *
69630902 TTAAGAGA-GTTGTATCTTAAGATTTTGGGGTATAAGTC
1 TTAAGAGAGGTTGTATCTTAAGAGTTTGGGGTAAAAATC
*
69630940 TTAAGAGAGATTGTA
1 TTAAGAGAGGTTGTA
69630955 AGGTTAAACA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
36 10 0.22
37 5 0.11
38 25 0.56
39 5 0.11
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.37
Consensus pattern (39 bp):
TTAAGAGAGGTTGTATCTTAAGAGTTTGGGGTAAAAATC
Found at i:69635630 original size:44 final size:44
Alignment explanation
Indices: 69635565--69635648 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
69635555 TTGATATTTC
* *
69635565 AAAGTCCATGGTTGTACCATGGCAATTAAGGAAGAATTGACGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
* *
69635609 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGA
69635649 TGGTTAAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 3 0.09
44 32 0.91
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
Found at i:69635993 original size:53 final size:54
Alignment explanation
Indices: 69635795--69636099 Score: 375
Period size: 55 Copynumber: 5.6 Consensus size: 54
69635785 TTGGTAAGAT
* * * *
69635795 AAGGATATCATGTAAGACCACGCCAAGACATAGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
69635849 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATATGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
69635904 AAAGG-TCCCATGTAAGATCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
69635957 AAGGATACCATGTAAGACCATGTCAAGACATCGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
69636012 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
69636065 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
69636100 ATGGTAATTT
Statistics
Matches: 215, Mismatches: 29, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
52 8 0.04
53 73 0.34
54 43 0.20
55 83 0.39
56 8 0.04
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:69635993 original size:108 final size:108
Alignment explanation
Indices: 69635803--69636095 Score: 478
Period size: 108 Copynumber: 2.7 Consensus size: 108
69635793 ATAAGGATAT
* * * * * * *
69635803 CATGTAAGACCACGCCAAGACATAGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
* *
69635868 ATGTCAAGACATGGCATTGATGAGTTACTATATGGCAAAGGTCC
65 ATGTCAAGACATCGCATTGATGAGTTACTATAAGGCAAAGGTCC
*
69635912 CATGTAAGATCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
69635977 TGTCAAGACATCGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 TGTCAAGACATCGCATTGATGAGTTACTATAAGGCAAAGGTCC
*
69636020 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
69636085 TGTCAAGACAT
66 TGTCAAGACAT
69636096 GGCAATGGTA
Statistics
Matches: 172, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
108 140 0.81
109 32 0.19
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATCGCATTGATGAGTTACTATAAGGCAAAGGTCC
Found at i:69638137 original size:46 final size:46
Alignment explanation
Indices: 69638087--69638355 Score: 264
Period size: 46 Copynumber: 5.8 Consensus size: 46
69638077 TGGTTGAGCA
*
69638087 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* * *
69638133 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGG
* *
69638178 CATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* * *
69638226 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGG
* * *
69638271 CATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGC-GAGCG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAG-G
* * * *
69638319 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69638356 GCGGGTTACA
Statistics
Matches: 182, Mismatches: 26, Indels: 30
0.76 0.11 0.13
Matches are distributed among these distances:
43 12 0.07
45 8 0.04
46 88 0.48
47 58 0.32
48 6 0.03
50 10 0.05
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
Found at i:69638204 original size:47 final size:47
Alignment explanation
Indices: 69638135--69638301 Score: 234
Period size: 47 Copynumber: 3.6 Consensus size: 47
69638125 TGCAAATGTC
69638135 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATT
* * * * *
69638182 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG--TC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATT
69638228 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATT
69638275 CGAACTCGTTGAGTTGAGTCCGAGTTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC
69638302 ACTTGTGGAT
Statistics
Matches: 103, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 28 0.27
47 55 0.53
48 4 0.04
50 6 0.06
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (47 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATT
Found at i:69638248 original size:93 final size:93
Alignment explanation
Indices: 69638084--69638348 Score: 458
Period size: 93 Copynumber: 2.8 Consensus size: 93
69638074 GGATGGTTGA
*
69638084 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
69638149 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
69638177 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
69638242 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * ** * *
69638270 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAGCGCCCGAGCTCGTTGAGT
1 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
*
69638335 TGAGTCCAAGTTCG
66 TGAGTCCGAGTTCG
69638349 CTTATGGGCG
Statistics
Matches: 164, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 164 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69643968 original size:32 final size:32
Alignment explanation
Indices: 69643929--69644152 Score: 349
Period size: 32 Copynumber: 7.0 Consensus size: 32
69643919 CATAAAAAAT
* *
69643929 ATCATACATTAGGTTTACTTATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* *
69643961 ATCATACATTAGTTTTGCATATAAAAAAGTAT
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
*
69643993 ATCATACATTAGGTTTACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* *
69644025 ATCATACATTAGTTTTGCATATAAAAAAGTAT
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
*
69644057 ATCATACATTAGGTTTACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* *
69644089 ATCATACATTAGTTTTGCATATGAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
*
69644121 ATCATATATTAGTTTTACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
69644153 CATAGTTATA
Statistics
Matches: 173, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 173 1.00
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.35
Consensus pattern (32 bp):
ATCATACATTAGTTTTACATATAAAAAAGTAG
Found at i:69644000 original size:64 final size:64
Alignment explanation
Indices: 69643927--69644152 Score: 407
Period size: 64 Copynumber: 3.5 Consensus size: 64
69643917 AACATAAAAA
*
69643927 ATATCATACATTAGGTTTACTTATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGT
1 ATATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGT
69643991 ATATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGT
1 ATATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGT
*
69644055 ATATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATGAAAAAGT
1 ATATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGT
* * *
69644119 AGATCATATATTAGTTTTACATATAAAAAAGTAG
1 ATATCATACATTAGGTTTACATATAAAAAAGTAG
69644153 CATAGTTATA
Statistics
Matches: 157, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 157 1.00
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.35
Consensus pattern (64 bp):
ATATCATACATTAGGTTTACATATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGT
Found at i:69650234 original size:84 final size:84
Alignment explanation
Indices: 69650088--69650243 Score: 199
Period size: 84 Copynumber: 1.9 Consensus size: 84
69650078 TCTAGTTGAG
* * *
69650088 CTATTCAATCTTCTATTTAGTTGAAATCTTTAATTCCAACAATAGGAGGATCTGACGTTGATAG-
1 CTATCCAATCTTCTATTTAGTTGAAATCTTAAATTCCAACAATAGGAGAATCTGACGTTGATAGT
69650152 CCTCCAATCTTTGGTTTAAA
66 CC-CCAATCTTTGGTTTAAA
* * * * * *
69650172 CTATCCAATCTTCTATTTA-TCTGAGATCTTAAATTCCTACATTCGGTGAATCTGAGGTTGATAG
1 CTATCCAATCTTCTATTTAGT-TGAAATCTTAAATTCCAACAATAGGAGAATCTGACGTTGATAG
69650236 TCCCCAAT
65 TCCCCAAT
69650244 TTTTTGTGGA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
83 1 0.02
84 58 0.95
85 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (84 bp):
CTATCCAATCTTCTATTTAGTTGAAATCTTAAATTCCAACAATAGGAGAATCTGACGTTGATAGT
CCCCAATCTTTGGTTTAAA
Found at i:69651847 original size:22 final size:22
Alignment explanation
Indices: 69651822--69651865 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
69651812 TTATGCTGAT
*
69651822 TCATAGAGCTGATTTGTAGGGA
1 TCATAGAACTGATTTGTAGGGA
*
69651844 TCATAGAATTGATTTGTAGGGA
1 TCATAGAACTGATTTGTAGGGA
69651866 CTTGTTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.07, G:0.30, T:0.34
Consensus pattern (22 bp):
TCATAGAACTGATTTGTAGGGA
Found at i:69656618 original size:38 final size:38
Alignment explanation
Indices: 69656576--69656651 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
69656566 ATGAAAAGTC
69656576 AATTACTATCATATAGTAATTAAGTCATTCATCACAAA
1 AATTACTATCATATAGTAATTAAGTCATTCATCACAAA
69656614 AATTACTATCATATAGTAATTAAGTCATTCATCACAAA
1 AATTACTATCATATAGTAATTAAGTCATTCATCACAAA
69656652 GACAAACGAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.34
Consensus pattern (38 bp):
AATTACTATCATATAGTAATTAAGTCATTCATCACAAA
Found at i:69660672 original size:23 final size:23
Alignment explanation
Indices: 69660645--69660688 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
69660635 TAAATTTTTG
69660645 AACAAAATATAACCCAATCATTT
1 AACAAAATATAACCCAATCATTT
69660668 AACAAAATATAACCCAATCAT
1 AACAAAATATAACCCAATCAT
69660689 AATTGAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (23 bp):
AACAAAATATAACCCAATCATTT
Found at i:69662391 original size:21 final size:20
Alignment explanation
Indices: 69662367--69662406 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
69662357 ATAAAATATT
69662367 AATAATTCAA-TAAATTAAAAA
1 AATAATT-AATTAAA-TAAAAA
69662388 AATAATTAATTAAATAAAA
1 AATAATTAATTAAATAAAA
69662407 TTAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (20 bp):
AATAATTAATTAAATAAAAA
Found at i:69664335 original size:338 final size:337
Alignment explanation
Indices: 69663717--69664394 Score: 1205
Period size: 338 Copynumber: 2.0 Consensus size: 337
69663707 CTTGCTGGCC
* *
69663717 TGCTTCAAATTCTCGAACTCAAATGTGCTTGTCATGCCATTTCTTAAGTCTTTCCTTGAGTAATT
1 TGCTTCAAATTCTCAAACTCAAATGTGCTTGTCATGCCATTTCTTAAGTCTTTCCTAGAGTAATT
* *
69663782 TAGCATTTTCGTATGAGAACATTCAAAATTCTTCTAACTCGCTGAGTTGGACATCCGTTTCTCTT
66 TAGCATTTTCGTATGAAAACATTCAAAATTCTTCTAACTCACTGAGTTGGACATCCGTTTCTCTT
**
69663847 TAGCAAGCTTAAGATCCAAGTTGAGTTATTGAAGAGCCTGGTAAGCTTTGTGCTCTAACTCCAAG
131 TAGCAAGCTTAAGATCCAAGTTGAGTTATTGAAGAGCCCAGTAAGCTTTGTGCTCTAACTCCAAG
*
69663912 GGCAGATGACAGGCTTTCTCAAAGACCAACCTATAGGGTGACATCCCTAAAGGTGTCTTGTATGC
196 GGCAGATGACAGGCTTTCTCAAAGACAAACCTATAGGGTGACATCCCTAAAGGTGTCTTGTATGC
*
69663977 TATCTTGTAGGCCTATAAAGCATCATCCAGTCTTTTGAACCAATCTCGTC-AGTTCGGGCAAACT
261 TATCTTGTAGGCCCATAAAGCATCATCCAGTCTTTTGAACCAATCTCGTCGA-TTCGGGCAAACT
69664041 ATCTTCTCAAGTA
325 ATCTTCTCAAGTA
*
69664054 TGCTTCAAATTCTCAAACTCAAATGTGCTTGTCATGCCATTTCTTGAGTCTTTCCTAGAGTAATT
1 TGCTTCAAATTCTCAAACTCAAATGTGCTTGTCATGCCATTTCTTAAGTCTTTCCTAGAGTAATT
* * *
69664119 TAGCATTTTCGTATGAAAACATTCAGAATTCTTCTAACTCATTGAGTTTGAGCATCCGTTTCTCT
66 TAGCATTTTCGTATGAAAACATTCAAAATTCTTCTAACTCACTGAGTTGGA-CATCCGTTTCTCT
* *
69664184 TTAGCAAGCTTAAGATCCAAGTTGAGTTATTGAAGAGCCCAGTAAGCTTTGTGCTCTAATTCTAA
130 TTAGCAAGCTTAAGATCCAAGTTGAGTTATTGAAGAGCCCAGTAAGCTTTGTGCTCTAACTCCAA
69664249 GGGCAGATGACAGGCTTTCTCAAAGACAAACCTATAGGGTGACATCCCTAAAGGTGTCTTGTATG
195 GGGCAGATGACAGGCTTTCTCAAAGACAAACCTATAGGGTGACATCCCTAAAGGTGTCTTGTATG
69664314 CTATCTTGTAGGCCCATAAAGCATCATCCAGTCTTTTGAACCAATCTCGTCGATTCGGGCAAACT
260 CTATCTTGTAGGCCCATAAAGCATCATCCAGTCTTTTGAACCAATCTCGTCGATTCGGGCAAACT
69664379 ATCTTCTCAAGTA
325 ATCTTCTCAAGTA
69664392 TGC
1 TGC
69664395 CTTTGATATT
Statistics
Matches: 325, Mismatches: 14, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
337 108 0.33
338 216 0.66
339 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (337 bp):
TGCTTCAAATTCTCAAACTCAAATGTGCTTGTCATGCCATTTCTTAAGTCTTTCCTAGAGTAATT
TAGCATTTTCGTATGAAAACATTCAAAATTCTTCTAACTCACTGAGTTGGACATCCGTTTCTCTT
TAGCAAGCTTAAGATCCAAGTTGAGTTATTGAAGAGCCCAGTAAGCTTTGTGCTCTAACTCCAAG
GGCAGATGACAGGCTTTCTCAAAGACAAACCTATAGGGTGACATCCCTAAAGGTGTCTTGTATGC
TATCTTGTAGGCCCATAAAGCATCATCCAGTCTTTTGAACCAATCTCGTCGATTCGGGCAAACTA
TCTTCTCAAGTA
Found at i:69671810 original size:13 final size:13
Alignment explanation
Indices: 69671787--69671822 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
69671777 GACATTCATG
69671787 ATTACACATTAACC
1 ATTA-ACATTAACC
69671801 ATTAACATTAACC
1 ATTAACATTAACC
69671814 ATT-ACATTA
1 ATTAACATTA
69671823 CACATGCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 6 0.27
13 12 0.55
14 4 0.18
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (13 bp):
ATTAACATTAACC
Found at i:69687281 original size:29 final size:29
Alignment explanation
Indices: 69687249--69687384 Score: 112
Period size: 29 Copynumber: 4.7 Consensus size: 29
69687239 GTAACCGTTA
* * *
69687249 CTTTTCATATTCAATGGTCAAAACCATCC
1 CTTTTCATATTCGATAGCCAAAACCATCC
* * ***
69687278 CTTTTCATTAATCGATAGTCTTCACCATCC
1 CTTTTCA-TATTCGATAGCCAAAACCATCC
* * *
69687308 CTTTTCATAATT-GATAACCAAAGCTATCC
1 CTTTTCAT-ATTCGATAGCCAAAACCATCC
* * *
69687337 CTTTTCATATTCGATAGCCGAAGCTATCC
1 CTTTTCATATTCGATAGCCAAAACCATCC
*
69687366 CTTTTCATATTCAATAGCC
1 CTTTTCATATTCGATAGCC
69687385 GAAGCTATCC
Statistics
Matches: 87, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
28 3 0.03
29 59 0.68
30 25 0.29
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (29 bp):
CTTTTCATATTCGATAGCCAAAACCATCC
Found at i:69687385 original size:29 final size:29
Alignment explanation
Indices: 69687304--69687462 Score: 182
Period size: 29 Copynumber: 5.6 Consensus size: 29
69687294 AGTCTTCACC
* * *
69687304 ATCCCTTTTCATAATT-GATAACCAAAGCT
1 ATCCCTTTTCAT-ATTCAATAGCCGAAGCT
*
69687333 ATCCCTTTTCATATTCGATAGCCGAAGCT
1 ATCCCTTTTCATATTCAATAGCCGAAGCT
69687362 ATCCCTTTTCATATTCAATAGCCGAAGCT
1 ATCCCTTTTCATATTCAATAGCCGAAGCT
* * * *
69687391 ATCCTTTTTCA-A-TCAATGGTCGTCA-CT
1 ATCCCTTTTCATATTCAATAGCCG-AAGCT
* *
69687418 ATCCCTTTTCATAATCAATAACCGAAGCT
1 ATCCCTTTTCATATTCAATAGCCGAAGCT
69687447 ATCCCTTTTCATATTC
1 ATCCCTTTTCATATTC
69687463 GGTGATCGCC
Statistics
Matches: 112, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
27 20 0.18
28 7 0.06
29 85 0.76
ACGTcount: A:0.28, C:0.27, G:0.09, T:0.36
Consensus pattern (29 bp):
ATCCCTTTTCATATTCAATAGCCGAAGCT
Found at i:69692403 original size:69 final size:67
Alignment explanation
Indices: 69692318--69692524 Score: 191
Period size: 69 Copynumber: 3.0 Consensus size: 67
69692308 TGATAGGGTC
* ** *
69692318 CATTAGGACAGAAAACACAAGAAGTATCAGGTGTAAGACCATAGTTTGACTATGGTGACCAATAG
1 CATTAGGACAGAAAACACAAGAATTA-CAGGTGTAAGACCATAGTTCAACTATGGCGACCAATAG
69692383 AGTT
65 AG-T
* * * * * * *
69692387 CATTGGGACAGTAAACATAGGAATTACGAGGTGTAAGACTATAGTTCAAGTATGGCGATCAATAG
1 CATTAGGACAGAAAACACAAGAATTAC-AGGTGTAAGACCATAGTTCAACTATGGCGACCAATAG
69692452 AGT
65 AGT
* * * * * *
69692455 CTAATAGGATAGCAAACACAAGGATTACACGGTGTAAGACCATAAG-TCAACTGTGGCAACCAAT
1 C-ATTAGGACAGAAAACACAAGAATTACA-GGTGTAAGACCAT-AGTTCAACTATGGCGACCAAT
69692519 AAGAGT
63 -AGAGT
69692525 TCGCTAGGAC
Statistics
Matches: 110, Mismatches: 23, Indels: 9
0.77 0.16 0.06
Matches are distributed among these distances:
68 4 0.04
69 99 0.90
70 7 0.06
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (67 bp):
CATTAGGACAGAAAACACAAGAATTACAGGTGTAAGACCATAGTTCAACTATGGCGACCAATAGA
GT
Found at i:69695567 original size:19 final size:19
Alignment explanation
Indices: 69695527--69695577 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
69695517 AAAACTTGTA
* *
69695527 TAAATTAAATTAACTAAGT
1 TAAATTAAACTAACTAAAT
69695546 TAAATTAAACTAA-TAGAAT
1 TAAATTAAACTAACTA-AAT
*
69695565 T-AAGTAAACTAAC
1 TAAATTAAACTAAC
69695578 CAAACCAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 12 0.44
19 15 0.56
ACGTcount: A:0.55, C:0.08, G:0.06, T:0.31
Consensus pattern (19 bp):
TAAATTAAACTAACTAAAT
Found at i:69697752 original size:42 final size:42
Alignment explanation
Indices: 69697701--69697782 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
69697691 CGATATCTCG
* * *
69697701 TATCGATGCCATGTCCCAGACATAGTCTTACACAAAATCAAA
1 TATCAATGCCATATCCCAAACATAGTCTTACACAAAATCAAA
* * *
69697743 TATCAATGCCATATCCCAAATATGGTCTTACACGAAATCA
1 TATCAATGCCATATCCCAAACATAGTCTTACACAAAATCA
69697783 CACATAACCC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.38, C:0.26, G:0.11, T:0.26
Consensus pattern (42 bp):
TATCAATGCCATATCCCAAACATAGTCTTACACAAAATCAAA
Found at i:69698075 original size:67 final size:67
Alignment explanation
Indices: 69697948--69698077 Score: 176
Period size: 67 Copynumber: 1.9 Consensus size: 67
69697938 ATTTACACAC
* *
69697948 GAACTTACCTCGGTACAAAATATGGACAACTAATTTGATTTAGTCCAAAATCTTTCTCTTTCCAT
1 GAACTTACCTCGGTACAAAATATGGACAACTAATTCGATTTAGTCCAAAACCTTTCTCTTTCCAT
69698013 AT
66 AT
* *
69698015 GAACTTACCT-GAGTACAAAATATGG-CTAACTAATTCGATTTAGTCTATAACCTTGT-TCTTTC
1 GAACTTACCTCG-GTACAAAATATGGAC-AACTAATTCGATTTAGTCCAAAACCTT-TCTCTTTC
69698077 C
63 C
69698078 CTGGTCTAGG
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
66 2 0.04
67 53 0.95
68 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.36
Consensus pattern (67 bp):
GAACTTACCTCGGTACAAAATATGGACAACTAATTCGATTTAGTCCAAAACCTTTCTCTTTCCAT
AT
Found at i:69713141 original size:34 final size:34
Alignment explanation
Indices: 69713103--69713169 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
69713093 ATCATATATA
*
69713103 TCCATCGAAATTCATCATTCAAACAGAACTTAAC
1 TCCATCAAAATTCATCATTCAAACAGAACTTAAC
*
69713137 TCCATTAAAATTCATCATTCAAACAGAACTTAA
1 TCCATCAAAATTCATCATTCAAACAGAACTTAA
69713170 TATTTTCTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.43, C:0.24, G:0.04, T:0.28
Consensus pattern (34 bp):
TCCATCAAAATTCATCATTCAAACAGAACTTAAC
Found at i:69733048 original size:42 final size:42
Alignment explanation
Indices: 69733001--69733086 Score: 145
Period size: 42 Copynumber: 2.0 Consensus size: 42
69732991 CAATACGGGA
* *
69733001 AATCACATATATCCATCGAAATTCATCATTCAAACGGAGCTT
1 AATCACATATATCCATCAAAATTCATCATTCAAACGGAACTT
*
69733043 AATCACATATATCCATCAAAATTCATCATTCAAATGGAACTT
1 AATCACATATATCCATCAAAATTCATCATTCAAACGGAACTT
69733085 AA
1 AA
69733087 CTCCATTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (42 bp):
AATCACATATATCCATCAAAATTCATCATTCAAACGGAACTT
Found at i:69733092 original size:34 final size:34
Alignment explanation
Indices: 69733054--69733120 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
69733044 ATCACATATA
* *
69733054 TCCATCAAAATTCATCATTCAAATGGAACTTAAC
1 TCCATCAAAACTCATCATTCAAATAGAACTTAAC
*
69733088 TCCATTAAAACTCATCATTCAAATAGAACTTAA
1 TCCATCAAAACTCATCATTCAAATAGAACTTAA
69733121 TATTTTCCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.43, C:0.22, G:0.04, T:0.30
Consensus pattern (34 bp):
TCCATCAAAACTCATCATTCAAATAGAACTTAAC
Found at i:69740302 original size:5 final size:5
Alignment explanation
Indices: 69740294--69741106 Score: 1626
Period size: 5 Copynumber: 162.6 Consensus size: 5
69740284 GACCCATGGC
69740294 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69740344 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69740394 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69740444 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69740494 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69740544 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69740594 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69740644 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69740694 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69740744 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69740794 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69740844 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69740894 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69740944 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69740994 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69741044 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
69741094 ATGAT ATGAT ATG
1 ATGAT ATGAT ATG
69741107 TCTATATAGA
Statistics
Matches: 808, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 808 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
ATGAT
Found at i:69752200 original size:27 final size:27
Alignment explanation
Indices: 69752170--69752263 Score: 134
Period size: 27 Copynumber: 3.5 Consensus size: 27
69752160 TTTGTCACGG
* * **
69752170 AGGCTTTCCTTTCATGTATTTCCATGA
1 AGGCATTCCTTTCATGTATTGCCACAA
*
69752197 AGGCACTCCTTTCATGTATTGCCACAA
1 AGGCATTCCTTTCATGTATTGCCACAA
69752224 AGGCATTCCTTTCATGTATTGCCACAA
1 AGGCATTCCTTTCATGTATTGCCACAA
*
69752251 AAGCATTCCTTTC
1 AGGCATTCCTTTC
69752264 CTAGCGTGTT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (27 bp):
AGGCATTCCTTTCATGTATTGCCACAA
Found at i:69764407 original size:87 final size:86
Alignment explanation
Indices: 69764252--69764410 Score: 237
Period size: 87 Copynumber: 1.8 Consensus size: 86
69764242 CATGCATAAG
* *
69764252 GTTGAGTTTTTACTCTTAATGAATTCATATCCCAGGGTTTGGGCGATCCTATTGAGACGAACTTG
1 GTTGAATTTTTACTCTTAATGAATTCATATCCCAGAGTTTGGGCGATCCTATTGAGACGAACTTG
69764317 ATGAATTTACTGACATGTGAT
66 ATGAATTTACTGACATGTGAT
* * * * * *
69764338 GTTGAATTTCTTACTCTTAATGAGTTCATATCCTAGAGTTTGGGTGGTCCTATTGGGACGGACTT
1 GTTGAATTT-TTACTCTTAATGAATTCATATCCCAGAGTTTGGGCGATCCTATTGAGACGAACTT
69764403 GATGAATT
65 GATGAATT
69764411 CACCGAATTT
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
86 8 0.12
87 56 0.88
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.38
Consensus pattern (86 bp):
GTTGAATTTTTACTCTTAATGAATTCATATCCCAGAGTTTGGGCGATCCTATTGAGACGAACTTG
ATGAATTTACTGACATGTGAT
Found at i:69765910 original size:42 final size:44
Alignment explanation
Indices: 69765863--69765959 Score: 148
Period size: 42 Copynumber: 2.3 Consensus size: 44
69765853 ATGTATATAA
69765863 TTAATATATAAAGAGT-AATTTATAAA-TTAAAAAATTATCTCT
1 TTAATATATAAAGAGTAAATTTATAAATTTAAAAAATTATCTCT
69765905 TTAATATAT-AA-AGTAAATTTATAAATTTAAAAAATTATCTCT
1 TTAATATATAAAGAGTAAATTTATAAATTTAAAAAATTATCTCT
* *
69765947 TCAATAAATAAAG
1 TTAATATATAAAG
69765960 TAAAAGATAT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
40 3 0.06
41 12 0.24
42 32 0.65
43 2 0.04
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.39
Consensus pattern (44 bp):
TTAATATATAAAGAGTAAATTTATAAATTTAAAAAATTATCTCT
Found at i:69765978 original size:42 final size:42
Alignment explanation
Indices: 69765883--69765969 Score: 113
Period size: 42 Copynumber: 2.1 Consensus size: 42
69765873 AAGAGTAATT
* * **
69765883 TATAAAT-TAAAAAATTATCTCTTTAATATATAAAGTAAATT
1 TATAAATCTAAAAAATTATCTCTTCAATAAATAAAGTAAAGA
*
69765924 TATAAATTTAAAAAATTATCTCTTCAATAAATAAAGTAAAAGA
1 TATAAATCTAAAAAATTATCTCTTCAATAAATAAAGT-AAAGA
69765967 TAT
1 TAT
69765970 GTACTAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 7 0.17
42 27 0.68
43 6 0.15
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (42 bp):
TATAAATCTAAAAAATTATCTCTTCAATAAATAAAGTAAAGA
Found at i:69770757 original size:69 final size:69
Alignment explanation
Indices: 69770645--69770777 Score: 239
Period size: 69 Copynumber: 1.9 Consensus size: 69
69770635 TAGGAAAAAT
* * *
69770645 AGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTTAGCAGGTTTTGTAGTTGTGGTAGGGC
1 AGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTCTAGTGGTGGTAGGGC
69770710 TGAC
66 TGAC
69770714 AGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTCTAGTGGTGGTAGGG
1 AGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTCTAGTGGTGGTAGGG
69770778 TTGATAGAGT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.29
Consensus pattern (69 bp):
AGGTTCCAAAACAGGAATAACAGTGGCTGTAGGATTTTCAGCAGGTTTTCTAGTGGTGGTAGGGC
TGAC
Found at i:69771003 original size:100 final size:100
Alignment explanation
Indices: 69770830--69771029 Score: 348
Period size: 100 Copynumber: 2.0 Consensus size: 100
69770820 TCATCTTCAC
* * *
69770830 TAAGTATCTCCCCCTGAAGATGAGAGGCTTAAAAATATGGCTCCCTTTCGGAACAAGTAACATCA
1 TAAGTATCTCCCCCTGAAGATGAGAGGCTGAAAAATATGGCTCACTTTCGGAAAAAGTAACATCA
69770895 AGGGACACAAACATCCGGTGTAAGGTTGGAGAGTA
66 AGGGACACAAACATCCGGTGTAAGGTTGGAGAGTA
*
69770930 TAAGTATCTCCCCCTGAAGATGAGAGGCTGAAAAATATGGCTCATTTTC-GAAGAAAGTAACATC
1 TAAGTATCTCCCCCTGAAGATGAGAGGCTGAAAAATATGGCTCACTTTCGGAA-AAAGTAACATC
69770994 AAGGGACACAAACATCCGGTGTAAGGTTGGAGAGTA
65 AAGGGACACAAACATCCGGTGTAAGGTTGGAGAGTA
69771030 GCACTTGTAC
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
99 3 0.03
100 92 0.97
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (100 bp):
TAAGTATCTCCCCCTGAAGATGAGAGGCTGAAAAATATGGCTCACTTTCGGAAAAAGTAACATCA
AGGGACACAAACATCCGGTGTAAGGTTGGAGAGTA
Found at i:69777921 original size:60 final size:60
Alignment explanation
Indices: 69777811--69777923 Score: 174
Period size: 60 Copynumber: 1.9 Consensus size: 60
69777801 TTGGGTTTCT
** **
69777811 TCAGAGCACTGAAGTTTTCACCCTTTTCTTATAGAGAGATTTGGGGGGGGGGGGGGGGGG
1 TCAGAGCACTGAAGTTTTCACCCTTTTCTTATAGAGAGATGAGGAAGGGGGGGGGGGGGG
69777871 TCAGAGCACTGAAGTTTTCACCCTTTTCTTATAGAGAGA-GAGAGAAGGGGGGG
1 TCAGAGCACTGAAGTTTTCACCCTTTTCTTATAGAGAGATGAG-GAAGGGGGGG
69777924 TCAGTTTTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
59 1 0.02
60 47 0.98
ACGTcount: A:0.23, C:0.14, G:0.37, T:0.26
Consensus pattern (60 bp):
TCAGAGCACTGAAGTTTTCACCCTTTTCTTATAGAGAGATGAGGAAGGGGGGGGGGGGGG
Found at i:69781106 original size:125 final size:127
Alignment explanation
Indices: 69780862--69781112 Score: 411
Period size: 126 Copynumber: 2.0 Consensus size: 127
69780852 TCTGAACCTT
* * * *
69780862 GCTGTCAAAGTGTGAAAATTTCTTGAATGCAATTTTTGTTAGTTACTTTATTACATTGTTTAGAA
1 GCTGTCAAAGTGTGAAAATTTCCTGAAGGCAATTTTTGTTAATTACTTTATTACATTATTTAGAA
*
69780927 AGCAAATATTATTTTGGTTTTGACACATACTTTAGTTGCAATAACTCCTGTTGT-CATGGTA
66 AGCAAATATTATTTTGGTTTTGACACATACCTTAGTTGCAATAACTCCTGTTGTCCATGGTA
69780988 GCTGT-AAAGTGTGAAAATTTTCCTGAAGGCAATTTTTGTTAATTACTTTATTACATTATTTAGA
1 GCTGTCAAAGTGTGAAAA-TTTCCTGAAGGCAATTTTTGTTAATTACTTTATTACATTATTTAGA
69781052 AAGCAAATATT-TTTGTGG-TTTGACACATACCTTAGTTGCAATAACTCCTGTTGTCCATGGT
65 AAGCAAATATTATTT-TGGTTTTGACACATACCTTAGTTGCAATAACTCCTGTTGTCCATGGT
69781113 GGAGCCCTCA
Statistics
Matches: 117, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
125 50 0.43
126 67 0.57
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.42
Consensus pattern (127 bp):
GCTGTCAAAGTGTGAAAATTTCCTGAAGGCAATTTTTGTTAATTACTTTATTACATTATTTAGAA
AGCAAATATTATTTTGGTTTTGACACATACCTTAGTTGCAATAACTCCTGTTGTCCATGGTA
Found at i:69786066 original size:19 final size:19
Alignment explanation
Indices: 69786039--69786077 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
69786029 AGCAGACCTC
*
69786039 AGTTGACCTTGATGAGGAG
1 AGTTAACCTTGATGAGGAG
69786058 AGTTAACCTTGATGAGGAG
1 AGTTAACCTTGATGAGGAG
69786077 A
1 A
69786078 ATCTGATGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.33, T:0.26
Consensus pattern (19 bp):
AGTTAACCTTGATGAGGAG
Found at i:69787984 original size:42 final size:42
Alignment explanation
Indices: 69787932--69788057 Score: 198
Period size: 42 Copynumber: 3.0 Consensus size: 42
69787922 TTTTTAGAAT
*
69787932 AAAACACTGCTAAAGACCAGGACCTTTCGCGGCGCTTTTATA
1 AAAACGCTGCTAAAGACCAGGACCTTTCGCGGCGCTTTTATA
* *
69787974 AAAACGCTGCTAAAAACCAGGACCTTTCGCGGCGCTTTTTTTA
1 AAAACGCTGCTAAAGACCAGGACCTTTCGCGGCGC-TTTTATA
* *
69788017 AAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTAT
1 AAAACGCTGCTAAAGACCAGGACCTTTCGCGGCGCTTTTAT
69788058 TGCAAACGCC
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
42 38 0.50
43 38 0.50
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (42 bp):
AAAACGCTGCTAAAGACCAGGACCTTTCGCGGCGCTTTTATA
Found at i:69788036 original size:43 final size:43
Alignment explanation
Indices: 69787940--69788073 Score: 198
Period size: 43 Copynumber: 3.1 Consensus size: 43
69787930 ATAAAACACT
* *
69787940 GCTAAAGACCAGGACCTTTCGCGGCGC-TTTTATAAAAACGCT
1 GCTAAAGACCAGGACCTTTCGCGGCGCTTTTTTTAAAAACGCC
*
69787982 GCTAAAAACCAGGACCTTTCGCGGCGCTTTTTTTAAAAACGCC
1 GCTAAAGACCAGGACCTTTCGCGGCGCTTTTTTTAAAAACGCC
* * **
69788025 GCTAAAGACCAGGACCTTTAGCGGCGCTTTTATTGCAAACGCC
1 GCTAAAGACCAGGACCTTTCGCGGCGCTTTTTTTAAAAACGCC
69788068 GCTAAA
1 GCTAAA
69788074 AATATGACCT
Statistics
Matches: 83, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
42 26 0.31
43 57 0.69
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (43 bp):
GCTAAAGACCAGGACCTTTCGCGGCGCTTTTTTTAAAAACGCC
Found at i:69792490 original size:40 final size:39
Alignment explanation
Indices: 69792437--69792541 Score: 165
Period size: 40 Copynumber: 2.6 Consensus size: 39
69792427 TTGAGATTTA
*
69792437 TTTTTGGTGTTTTTTATAAAAACGCCGTTATTGTTAATT
1 TTTTTGGCGTTTTTTATAAAAACGCCGTTATTGTTAATT
69792476 TTTTATGGCGTTTTTTATAAAAACGCCGTTATTGTTAATT
1 TTTT-TGGCGTTTTTTATAAAAACGCCGTTATTGTTAATT
* *
69792516 TTTTGTAGCGTTTTTCATAAAAACGC
1 TTTT-TGGCGTTTTTTATAAAAACGC
69792542 TGGTAAAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
39 4 0.07
40 57 0.93
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.50
Consensus pattern (39 bp):
TTTTTGGCGTTTTTTATAAAAACGCCGTTATTGTTAATT
Found at i:69793395 original size:15 final size:15
Alignment explanation
Indices: 69793341--69793404 Score: 60
Period size: 14 Copynumber: 4.4 Consensus size: 15
69793331 CTTAGCTCCT
69793341 AACCCCTAAACCTTA
1 AACCCCTAAACCTTA
** * *
69793356 AA-CAATAAAACATA
1 AACCCCTAAACCTTA
* *
69793370 AACCCTTAACCCTT-
1 AACCCCTAAACCTTA
69793384 AACCCCTAAACCTTA
1 AACCCCTAAACCTTA
69793399 AACCCC
1 AACCCC
69793405 AATACCCTCA
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
14 22 0.61
15 14 0.39
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.19
Consensus pattern (15 bp):
AACCCCTAAACCTTA
Found at i:69793452 original size:15 final size:15
Alignment explanation
Indices: 69793434--69793481 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
69793424 CCTAACCTTT
69793434 AACCCATAAACCATA
1 AACCCATAAACCATA
* *
69793449 AA-CCATAATCCCTA
1 AACCCATAAACCATA
69793463 AACCCATAATA-CATA
1 AACCCATAA-ACCATA
69793478 AACC
1 AACC
69793482 TTATAATAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (15 bp):
AACCCATAAACCATA
Found at i:69793749 original size:40 final size:39
Alignment explanation
Indices: 69793693--69793927 Score: 129
Period size: 40 Copynumber: 5.7 Consensus size: 39
69793683 TTCTATTTTT
*
69793693 GCGGCGTTTTTCAAAAAACGCCGCTAAAGATCG-AGC-ACTA
1 GCGGCGTTTTTTAAAAAACGCCGCTAAAGAT-GTA-CTA-TA
* *
69793733 GCGGCGTTTTTTAAAAAGCGCCGCTAAAGGTGTACTTATA
1 GCGGCGTTTTTTAAAAAACGCCGCTAAAGATGTAC-TATA
* *
69793773 GCGGCGTTTCTTAAAAAAGCGCCGCTAAAGCCAT-TACAAAATTCTTTA
1 GCGGCGTTTTTTAAAAAA-CGCCGCTAAAG--ATGT-----A--CTATA
* * * * *
69793821 GCGGCGCTTTTTAGAAAACGCCGCTAATGCT-TGATCTTTA
1 GCGGCGTTTTTTAAAAAACGCCGCTAAAGATGT-A-CTATA
* * * * *
69793861 ACGGCGTTTTCTAAAAAGCGCCGCTAATGGTGTACATATA
1 GCGGCGTTTTTTAAAAAACGCCGCTAAAGATGTAC-TATA
*
69793901 GCGGCG-TTTTTAGAAAAGCGCCGCTAA
1 GCGGCGTTTTTTA-AAAAACGCCGCTAA
69793928 TACTCGATCT
Statistics
Matches: 157, Mismatches: 22, Indels: 32
0.74 0.10 0.15
Matches are distributed among these distances:
39 8 0.05
40 101 0.64
41 14 0.09
42 1 0.01
43 1 0.01
45 2 0.01
47 11 0.07
48 18 0.11
49 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (39 bp):
GCGGCGTTTTTTAAAAAACGCCGCTAAAGATGTACTATA
Found at i:69793924 original size:80 final size:79
Alignment explanation
Indices: 69793819--69793966 Score: 219
Period size: 80 Copynumber: 1.9 Consensus size: 79
69793809 CAAAATTCTT
* *
69793819 TAGCGGCGCTTTTTAGAAAACGCCGCTAATGCTTGATCTTTAACGGCGTTTTCTA-AAAAGCGCC
1 TAGCGGCGCTTTTTAGAAAACGCCGCTAATACTCGATCTTTAACGGCGTTTT-TAGAAAA-CGCC
69793883 GCTAATGGTGTACATA
64 GCTAATGGTGTACATA
* *
69793899 TAGCGGCG-TTTTTAGAAAAGCGCCGCTAATACTCGATCTTTAGCGGTGTTTTTAGAAAACGCCG
1 TAGCGGCGCTTTTTAGAAAA-CGCCGCTAATACTCGATCTTTAACGGCGTTTTTAGAAAACGCCG
69793963 CTAA
65 CTAA
69793967 AGCCACCAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
79 22 0.35
80 40 0.65
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (79 bp):
TAGCGGCGCTTTTTAGAAAACGCCGCTAATACTCGATCTTTAACGGCGTTTTTAGAAAACGCCGC
TAATGGTGTACATA
Found at i:69793928 original size:40 final size:39
Alignment explanation
Indices: 69793815--69793966 Score: 168
Period size: 40 Copynumber: 3.8 Consensus size: 39
69793805 ATTACAAAAT
69793815 TCTTTAGCGGCGCTTTTTAGAAAACGCCGCTAATGCT-TGA
1 TCTTTAGCGGCG-TTTTTAGAAAACGCCGCTAATGCTGT-A
* *
69793855 TCTTTAACGGCGTTTTCTA-AAAAGCGCCGCTAATGGTGTA
1 TCTTTAGCGGCGTTTT-TAGAAAA-CGCCGCTAATGCTGTA
* *
69793895 -CATATAGCGGCGTTTTTAGAAAAGCGCCGCTAATACTCG-A
1 TC-TTTAGCGGCGTTTTTAGAAAA-CGCCGCTAATGCT-GTA
*
69793935 TCTTTAGCGGTGTTTTTAGAAAACGCCGCTAA
1 TCTTTAGCGGCGTTTTTAGAAAACGCCGCTAA
69793967 AGCCACCAAA
Statistics
Matches: 97, Mismatches: 8, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
39 20 0.21
40 74 0.76
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (39 bp):
TCTTTAGCGGCGTTTTTAGAAAACGCCGCTAATGCTGTA
Found at i:69795656 original size:45 final size:45
Alignment explanation
Indices: 69795592--69795754 Score: 183
Period size: 45 Copynumber: 3.7 Consensus size: 45
69795582 AGGACTATGC
*
69795592 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGTGTCGATA
1 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGTATCGATA
*
69795637 TATGTGTTTTCGTTTAAGACCACGTCTGGGACGTTGGTATCGATA
1 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGTATCGATA
* * * * * * * *
69795682 TATATGGTTACGAGTAAGACCATGTCTGGGACATCGGTATTG-TA
1 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGTATCGATA
*
69795726 T-T-TGATTT-GTGTAAGACC-CTGTCTGGGAC
1 TATGTGTTTTCGTGTAAGACCAC-GTCTGGGAC
69795755 AGTGACATTG
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
41 18 0.18
42 4 0.04
43 1 0.01
44 3 0.03
45 76 0.75
ACGTcount: A:0.21, C:0.15, G:0.28, T:0.36
Consensus pattern (45 bp):
TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGTATCGATA
Found at i:69799373 original size:46 final size:46
Alignment explanation
Indices: 69799321--69799485 Score: 231
Period size: 46 Copynumber: 3.6 Consensus size: 46
69799311 GCTTTCTGAA
* *
69799321 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATAAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * *
69799367 ATGAAATTTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
69799413 ATGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* **
69799459 AGGAAATGAGTAAGACCACAGTTGAAA
1 ATGAAATGAGTAAGACCATGGTTGAAA
69799486 AACACTATGG
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 105 1.00
ACGTcount: A:0.42, C:0.13, G:0.22, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:69804198 original size:21 final size:23
Alignment explanation
Indices: 69804173--69804215 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
69804163 AATATTCTTA
69804173 TTGTTA-AAAA-TTTATTTTAGT
1 TTGTTAGAAAAGTTTATTTTAGT
69804194 TTGTTAGAAAATGTTTATTTTA
1 TTGTTAGAAAA-GTTTATTTTA
69804216 ATATTTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 4 0.21
24 9 0.47
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.56
Consensus pattern (23 bp):
TTGTTAGAAAAGTTTATTTTAGT
Found at i:69807003 original size:29 final size:27
Alignment explanation
Indices: 69806970--69807044 Score: 71
Period size: 30 Copynumber: 2.6 Consensus size: 27
69806960 TTCATCTATA
69806970 GAAAATAAAATAAAGAAA-ATGATGAAATT
1 GAAAATAAAATAAA-AAAGATGAT-AAA-T
*
69806999 GAAAAGTGAAATAATAAAAGATGATAAAT
1 GAAAA-TAAAATAA-AAAAGATGATAAAT
*
69807028 GATAAAAAAAATAAAAA
1 GA-AAATAAAATAAAAA
69807045 TATCATCAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
28 3 0.08
29 14 0.36
30 16 0.41
31 6 0.15
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19
Consensus pattern (27 bp):
GAAAATAAAATAAAAAAGATGATAAAT
Found at i:69807727 original size:23 final size:23
Alignment explanation
Indices: 69807693--69807737 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
69807683 CCTGTTACAT
69807693 GGCTCTTTGTGAGCTTCCTGATA
1 GGCTCTTTGTGAGCTTCCTGATA
*
69807716 GGCT-TTTCGTGAGTTTCCTGAT
1 GGCTCTTT-GTGAGCTTCCTGAT
69807738 TAAAAGTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.11, C:0.20, G:0.27, T:0.42
Consensus pattern (23 bp):
GGCTCTTTGTGAGCTTCCTGATA
Found at i:69810707 original size:19 final size:17
Alignment explanation
Indices: 69810660--69810708 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 17
69810650 CATATTTTGT
*
69810660 ATTTGAATTTTTGATAA
1 ATTTGAAATTTTGATAA
69810677 ATTTGAGTAATTTTGACTAA
1 ATTTGA--AATTTTGA-TAA
69810697 ATTGTGAAATTT
1 ATT-TGAAATTT
69810709 ATAGATTGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 6 0.22
19 12 0.44
20 6 0.22
21 3 0.11
ACGTcount: A:0.35, C:0.02, G:0.14, T:0.49
Consensus pattern (17 bp):
ATTTGAAATTTTGATAA
Found at i:69811254 original size:44 final size:43
Alignment explanation
Indices: 69811206--69811404 Score: 190
Period size: 44 Copynumber: 4.6 Consensus size: 43
69811196 ATATGTTATT
* *
69811206 GTGTAAGACCATGTCTAGGACATTGGCATCGACTTATGATTTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGA-TTATGATTTAC
* * * * *
69811250 GTGTAAGACCACGTCTGAGACGTTGGTATCAACTTATGATTGAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGA-TTATGATTTAC
* *
69811294 GTATAAGACCACGTCTGGGACGTTGGCATCGTATT-TGATTT-C
1 GTGTAAGACCACGTCTGGGACATTGGCATCG-ATTATGATTTAC
* * *
69811336 GTGTAAGACTC-TGTCTGGGACAGTGGCATCGATATTTGA-TTAC
1 GTGTAAGAC-CACGTCTGGGACATTGGCATCGAT-TATGATTTAC
* * *
69811379 ATGTAAGACCACGTCTGAGACGTTGG
1 GTGTAAGACCACGTCTGGGACATTGG
69811405 AATTGTATGA
Statistics
Matches: 128, Mismatches: 21, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.02
42 30 0.23
43 29 0.23
44 66 0.52
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGATTATGATTTAC
Found at i:69811373 original size:43 final size:42
Alignment explanation
Indices: 69811306--69811404 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 42
69811296 ATAAGACCAC
* *
69811306 GTCTGGGACGTTGGCATCGTATTTGATTTCGTGTAAGACTCT
1 GTCTGGGACGTTGGCATCGTATTTGATTACATGTAAGACTCT
*
69811348 GTCTGGGACAG-TGGCATCGATATTTGATTACATGTAAGAC-CAC
1 GTCTGGGAC-GTTGGCATCG-TATTTGATTACATGTAAGACTC-T
*
69811391 GTCTGAGACGTTGG
1 GTCTGGGACGTTGG
69811405 AATTGTATGA
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
42 19 0.39
43 30 0.61
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.32
Consensus pattern (42 bp):
GTCTGGGACGTTGGCATCGTATTTGATTACATGTAAGACTCT
Found at i:69813495 original size:29 final size:29
Alignment explanation
Indices: 69813460--69813533 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
69813450 GTTGTGAGAT
* *
69813460 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
69813489 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
69813518 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69813534 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:69825150 original size:41 final size:41
Alignment explanation
Indices: 69825093--69825171 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
69825083 TGATAAAATT
*
69825093 TGTTAGAAACACACTCAATTTAATATTCGGGTATAGTAATC
1 TGTTAGAAACACACTCAATTTAATATTCAGGTATAGTAATC
*
69825134 TGTTAGAAACACACTCAATTTAATATTCATGTATAGTA
1 TGTTAGAAACACACTCAATTTAATATTCAGGTATAGTA
69825172 TTGATAGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (41 bp):
TGTTAGAAACACACTCAATTTAATATTCAGGTATAGTAATC
Found at i:69831760 original size:21 final size:21
Alignment explanation
Indices: 69831734--69831775 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
69831724 CAAAGAGATT
69831734 ATTTTTAAAATTTATAATGCC
1 ATTTTTAAAATTTATAATGCC
69831755 ATTTTTAAAATTTATAATGCC
1 ATTTTTAAAATTTATAATGCC
69831776 CTAAGATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.48
Consensus pattern (21 bp):
ATTTTTAAAATTTATAATGCC
Found at i:69835461 original size:37 final size:37
Alignment explanation
Indices: 69835407--69835509 Score: 154
Period size: 37 Copynumber: 2.8 Consensus size: 37
69835397 CGAATAGTCC
69835407 CCACACGTAGT-TATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCT-TCGGGTCTTACCCGGACAAAATCT
* *
69835444 CCACACGTAGTCTTCGGGTCTTACCCGGACATAGTCT
1 CCACACGTAGTCTTCGGGTCTTACCCGGACAAAATCT
* *
69835481 CCACACGTAGTCATCGAGTCTTACCCGGA
1 CCACACGTAGTCTTCGGGTCTTACCCGGA
69835510 ATATATTTCC
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
37 60 0.98
38 1 0.02
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCTTCGGGTCTTACCCGGACAAAATCT
Found at i:69835959 original size:47 final size:47
Alignment explanation
Indices: 69835859--69836736 Score: 1677
Period size: 47 Copynumber: 18.6 Consensus size: 47
69835849 GCCGAATCAC
*
69835859 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATGTTCACAT
1 TAGCCATT-GGCTTTACCACGTATACATATCTCATACATA-GTTCACAT
*
69835908 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69835955 TAGCCATTCGGCTTTA-CACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATT-GGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69836002 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69836049 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69836096 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69836143 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69836190 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69836237 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69836284 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69836331 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69836378 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69836425 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69836472 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69836519 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69836566 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69836613 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
*
69836660 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
*
69836707 TAGCCATTCGGCTTTACCACATATACATAT
1 TAGCCATT-GGCTTTACCACGTATACATAT
69836737 ATATTTATCT
Statistics
Matches: 821, Mismatches: 5, Indels: 7
0.99 0.01 0.01
Matches are distributed among these distances:
46 7 0.01
47 749 0.91
48 57 0.07
49 8 0.01
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.34
Consensus pattern (47 bp):
TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
Found at i:69839479 original size:40 final size:40
Alignment explanation
Indices: 69839414--69839642 Score: 363
Period size: 40 Copynumber: 5.8 Consensus size: 40
69839404 TCATAATTCC
* * *
69839414 AGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGACATAACACT
* *
69839453 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACACT
*
69839493 AGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACACT
69839533 AGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACACT
* *
69839573 AGCACGAATGCTCTTCGGGACTTAGCCCAGACATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACACT
69839613 AGCACGAATGCTCTTCGGGACTTAGCCCGG
1 AGCACGAATGCTCTTCGGGACTTAGCCCGG
69839643 CTATATAACT
Statistics
Matches: 180, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 13 0.07
40 167 0.93
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACACT
Found at i:69840964 original size:41 final size:41
Alignment explanation
Indices: 69840902--69840984 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
69840892 CAAATCTTCA
*
69840902 GCGAAACCTTTAGCTCGAATAGTCCCCACACGTAGTTATCG
1 GCGAAACCTTTAGCTCAAATAGTCCCCACACGTAGTTATCG
69840943 GCGAAACCTTTAGCTCAAATAGTCCCCACACGTAGTTATCG
1 GCGAAACCTTTAGCTCAAATAGTCCCCACACGTAGTTATCG
69840984 G
1 G
69840985 GTCTTACCCG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (41 bp):
GCGAAACCTTTAGCTCAAATAGTCCCCACACGTAGTTATCG
Found at i:69841021 original size:37 final size:37
Alignment explanation
Indices: 69840968--69841070 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
69840958 CAAATAGTCC
*
69840968 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
69841005 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
69841042 CCAAACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
69841071 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:69841561 original size:47 final size:47
Alignment explanation
Indices: 69841243--69842312 Score: 1888
Period size: 47 Copynumber: 22.6 Consensus size: 47
69841233 GCCGAATCAC
* * **
69841243 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTTGCAT
1 TAGCCATT-GGCTTTACCACGTATACATATCTCATACATAGTTCACAT
* *
69841291 TAGCCATTCGGCTTTACCACGTATACATATCTCATACGTATTTCACAT
1 TAGCCATT-GGCTTTACCACGTATACATATCTCATACATAGTTCACAT
* * ** *
69841339 TAGCCATTGGGCTTTACCGCATATACATATCTCATATGTATTTCACAT
1 TAGCCATT-GGCTTTACCACGTATACATATCTCATACATAGTTCACAT
** * *
69841387 TAGCCATTCGATTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATT-GGCTTTACCACGTATACATATCTCATACATAGTTCACAT
* * *
69841435 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCATAT
1 TAGCCATT-GGCTTTACCACGTATACATATCTCATACATAGTTCACAT
*
69841483 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATT-GGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69841531 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69841578 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69841625 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69841672 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69841719 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69841766 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69841813 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69841860 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69841907 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69841954 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69842001 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69842048 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69842095 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69842142 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
69842189 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
*
69842236 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
*
69842283 TAGCCATTCGGCTTTACCACATATACATAT
1 TAGCCATT-GGCTTTACCACGTATACATAT
69842313 ATATTTATCT
Statistics
Matches: 997, Mismatches: 24, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
47 750 0.75
48 247 0.25
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.34
Consensus pattern (47 bp):
TAGCCATTGGCTTTACCACGTATACATATCTCATACATAGTTCACAT
Found at i:69844634 original size:18 final size:17
Alignment explanation
Indices: 69844611--69844651 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 17
69844601 TATTTTACTA
69844611 TTATTTTTATTTCTATTT
1 TTATTTTTATTTCTA-TT
*
69844629 TTATTTTTGTTTCTATT
1 TTATTTTTATTTCTATT
69844646 TTATTT
1 TTATTT
69844652 CAAATTCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (17 bp):
TTATTTTTATTTCTATT
Found at i:69853045 original size:93 final size:93
Alignment explanation
Indices: 69852886--69853057 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
69852876 CGCCCATAAG
* * * *
69852886 CGAACTCGGACTCAACTCAATGAGCTCAGGCGTTCACATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
69852951 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* * *
69852979 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAATTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
69853044 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69853058 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:69853051 original size:46 final size:46
Alignment explanation
Indices: 69852879--69853051 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
69852869 TGTAACCCGC
* * * *
69852879 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCAGGCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTCACAT
* * *
69852925 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC--A-GAC-A-TTCACAT
* * *
69852975 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTCACAT
* *
69853018 CCATAAGTGAATTCGGACTCAACTCAACGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC
69853052 GGATGCTCAA
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 55 0.54
47 26 0.25
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTCACAT
Found at i:69855488 original size:30 final size:30
Alignment explanation
Indices: 69855444--69855532 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
69855434 CAAAGATAAC
*
69855444 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
69855473 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
69855503 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
69855533 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:69855492 original size:15 final size:14
Alignment explanation
Indices: 69855444--69855526 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
69855434 CAAAGATAAC
*
69855444 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
69855458 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
69855473 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
69855488 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
69855503 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
69855518 AAGAAACCC
1 AAGAAACCC
69855527 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:69855532 original size:15 final size:15
Alignment explanation
Indices: 69855455--69855532 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
69855445 AGAAAACCGA
69855455 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
69855470 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
69855484 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
69855499 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
69855515 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
69855530 ATA
1 ATA
69855533 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:69858957 original size:49 final size:49
Alignment explanation
Indices: 69858887--69859384 Score: 793
Period size: 49 Copynumber: 10.3 Consensus size: 49
69858877 GTGAACATGC
*
69858887 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
69858936 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
69858985 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
69859034 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
69859083 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
69859132 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
69859181 ATATATGTGATAAGGCCTAGAT-G--AATGTGA--AA-GTGTATATA-TGGTAT
1 ATATATGTGATAAGGCCTA-ATGGCCGATGTGATGAATGTG-A-A-AGT-GTAT
69859228 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
69859277 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * * *
69859324 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
69859373 A-A-ATGTGATAAG
1 ATATATGTGATAAG
69859385 TCCCGAAGGG
Statistics
Matches: 423, Mismatches: 12, Indels: 30
0.91 0.03 0.06
Matches are distributed among these distances:
44 3 0.01
45 3 0.01
46 4 0.01
47 79 0.19
48 1 0.00
49 323 0.76
50 4 0.01
51 3 0.01
52 3 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:69862744 original size:93 final size:93
Alignment explanation
Indices: 69862585--69862756 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
69862575 CGCCCATAAG
* * * *
69862585 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAGGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
69862650 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
69862678 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
69862743 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69862757 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:69862746 original size:46 final size:46
Alignment explanation
Indices: 69862578--69862753 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
69862568 TGTAACCCGC
* * * *
69862578 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * * *
69862624 CCATAGGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
69862674 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
69862717 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
69862754 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.58
47 28 0.27
48 1 0.01
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:69862772 original size:46 final size:45
Alignment explanation
Indices: 69862630--69862772 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 45
69862620 GCATCCATAG
* *
69862630 GTGAACTCAGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTTCA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-A
* * * * *
69862678 -CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AA
1 GTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCTA
69862723 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTA
69862769 GTGA
1 GTGA
69862773 CATGTCACTT
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 33 0.42
47 30 0.38
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTA
Found at i:69865356 original size:17 final size:18
Alignment explanation
Indices: 69865326--69865360 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
69865316 TGTAATTCCT
69865326 GTGTGGGCCCACACGCCC
1 GTGTGGGCCCACACGCCC
*
69865344 GTGT-GGCCTACACGCCC
1 GTGTGGGCCCACACGCCC
69865361 AACTTGGCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.11, C:0.43, G:0.31, T:0.14
Consensus pattern (18 bp):
GTGTGGGCCCACACGCCC
Found at i:69865969 original size:15 final size:15
Alignment explanation
Indices: 69865936--69865980 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
69865926 TGCCCAAATG
*
69865936 AAGAAAA-AG-AAAG
1 AAGAAAAGAGAAAAA
*
69865949 AAGAAAAGGGAAAAA
1 AAGAAAAGAGAAAAA
69865964 AAGAAAAGAGAAAAA
1 AAGAAAAGAGAAAAA
69865979 AA
1 AA
69865981 ACTCAAGAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 7 0.26
14 1 0.04
15 19 0.70
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (15 bp):
AAGAAAAGAGAAAAA
Found at i:69872225 original size:48 final size:48
Alignment explanation
Indices: 69872156--69872251 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
69872146 ACCCCCAATA
** * *
69872156 GTGTTTAACTTTTTTGATAAACCTCAAAATTAGGACCGGGCTCGGCAT
1 GTGTTTAACTTTTCAGATAAACCTCAAAATTAGAACCGGACTCGGCAT
* * * *
69872204 GTGTTTAACTTTTCAGGTAAACTTCGAAATTAGAATCGGACTCGGCAT
1 GTGTTTAACTTTTCAGATAAACCTCAAAATTAGAACCGGACTCGGCAT
69872252 TCAAAGAATC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (48 bp):
GTGTTTAACTTTTCAGATAAACCTCAAAATTAGAACCGGACTCGGCAT
Found at i:69875889 original size:42 final size:42
Alignment explanation
Indices: 69875841--69875992 Score: 189
Period size: 42 Copynumber: 3.6 Consensus size: 42
69875831 AGATTATGTT
* *
69875841 TAAGACCATATCTGGGATATGACATCAATATGAGACTTCGTG
1 TAAGACCATATCTGGGATATGGCATCGATATGAGACTTCGTG
* *
69875883 TAAGACCATATATGGGATATGGCATCGACATGAGACTTCGTG
1 TAAGACCATATCTGGGATATGGCATCGATATGAGACTTCGTG
* * * * * *
69875925 TAAAACCATAGCAGGGCTATTGGCATCGATACGAGA-TTACATG
1 TAAGACCATATCTGGGATA-TGGCATCGATATGAGACTT-CGTG
69875968 TAAGACCATATCTGGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
69875993 TAGTATGGTA
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 60 0.65
43 32 0.35
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATATGAGACTTCGTG
Found at i:69881931 original size:47 final size:48
Alignment explanation
Indices: 69881875--69882146 Score: 233
Period size: 47 Copynumber: 5.8 Consensus size: 48
69881865 TGGGTAAGGT
*
69881875 GCCGATGCCAAGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
* * **
69881922 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-CATCATCTTGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATC-TCAA
* * *
69881970 GCCGATG-CATGTCCCAGACAT-GTCTTATACTGGCTTA-CATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AA
* * **
69882016 GCCGATG-CATGTCTCAGACAT-GTCTTACACTAGCTC-TGGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
* * * * ***
69882061 TACCGATGCCATGTCCTAGACATGGTCTTACACCGGCTC-TCATAATGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CTCAA
** *
69882110 GTTGATG-CATGTCCCAGACAT-GCCTTACACTGGCTCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
69882147 CAAACAAATG
Statistics
Matches: 179, Mismatches: 36, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
45 2 0.01
46 73 0.41
47 76 0.42
48 27 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
Found at i:69882020 original size:46 final size:47
Alignment explanation
Indices: 69881875--69882148 Score: 231
Period size: 46 Copynumber: 5.9 Consensus size: 47
69881865 TGGGTAAGGT
* * *
69881875 GCCGATGCCAAGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGA
* * *
69881922 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-CATCATCTTGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTCG-A
* *
69881970 GCCGATG-CATGTCCCAGACAT-GTCTTATACTGGCTTACATCTCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGA
* * *** *
69882015 GGCCGATG-CATGTCTCAGACAT-GTCTTACACTAGCTCTGGTCTCAA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGA
* * * * * *
69882061 TACCGATGCCATGTCCTAGACATGGTCTTACACCGGCTCTCATAAT-GTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCG-A
** *
69882110 GTTGATG-CATGTCCCAGACAT-GCCTTACACTGGCTCACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA
69882149 AACAAATGAC
Statistics
Matches: 182, Mismatches: 37, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 77 0.42
47 77 0.42
48 26 0.14
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGA
Found at i:69882142 original size:140 final size:141
Alignment explanation
Indices: 69881875--69882144 Score: 343
Period size: 140 Copynumber: 1.9 Consensus size: 141
69881865 TGGGTAAGGT
*
69881875 GCCGATGCCAAGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAG
1 GCCGATGCCAAGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAG
* ** * *
69881940 ACATGGTCTTACACTGACCATCATCTTGTAGCCGATGCATGTCCCAGACATGTCTTATACTGGCT
66 ACATGGTCTTACACCGACCATCATAATGTAGCCGATGCATGTCCCAGACATGCCTTACACTGGCT
69882005 TACATCTCGAG
131 TACATCTCGAG
* * *
69882016 GCCGATG-CATGTCTCAGACAT-GTCTTACACTAGCTC-TGGTCTCAA-TACCGATGCCATGTCC
1 GCCGATGCCAAGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAAGT--CGATGCCATGTCC
* * * **
69882077 TAGACATGGTCTTACACCGGCTC-TCATAATGTGGTTGATGCATGTCCCAGACATGCCTTACACT
63 CAGACATGGTCTTACACCGAC-CATCATAATGTAGCCGATGCATGTCCCAGACATGCCTTACACT
69882141 GGCT
127 GGCT
69882145 CACAAACAAA
Statistics
Matches: 111, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
138 2 0.02
139 20 0.18
140 81 0.73
141 8 0.07
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (141 bp):
GCCGATGCCAAGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAG
ACATGGTCTTACACCGACCATCATAATGTAGCCGATGCATGTCCCAGACATGCCTTACACTGGCT
TACATCTCGAG
Found at i:69883332 original size:485 final size:485
Alignment explanation
Indices: 69882398--69883351 Score: 1552
Period size: 485 Copynumber: 2.0 Consensus size: 485
69882388 CTAGGTTCAG
* * * * * *
69882398 ATTTGACAATTTTTTATTTGTGAGTGCTTCAAGTTGCTGAAGATTTTGGAGTTCAAAACCCCCCT
1 ATTTGAAAATTCTTAATTTGTGAGTGCTTCAAGTTACTGAAAATTTTGAAGTTCAAAACCCCCCT
** * * *
69882463 ATGGTTGGTAAAAATCGATAAAGATGAAGAAAAATAAAAGGGATGTGGCCTTTGTTTTATTTAAT
66 ATGACTAGTAAAAATCGATAAAGAAGAAGAAAAATAAAAGGGATATGGCCTTTGTTTTATTTAAT
* *
69882528 TTAAAACTAGTCAAAATTGGTGACCAAACACCACCTAATTTTGACTTTCCCATCAAATTGTCTCC
131 TTAAAACTAGTCAAAATTGGTGACCAAACACCACCTAAATTTGACTTTCCCATCAAATTGCCTCC
* *
69882593 TATGGCTGGCCACCCTAGTCCCTAAGGGTCTAATTGCTCTTTAAAGACCCCCAATTTTGGTTCTC
196 TATGGCCGGCCACCCTAGTACCTAAGGGTCTAATTGCTCTTTAAAGACCCCCAATTTTGGTTCTC
* *
69882658 TAGCTATTTAACATCTTTAGCTATCAATTTAAGACTTTTGCACTTTATGTGATTTAGTCATTTTT
261 TAGCTATTTAACATCTTTAGCAATCAATTTAAGACTTTTGCACTTTATGCGATTTAGTCATTTTT
* * *
69882723 CGCAATTGGGCTTACAAACGTTAAAATTAATCTACCAAATTTTTCATGCACTCTAATAACAATGT
326 CGCAATTGGGCTTACAAACGTTAAAATTAATCCACCAAATTTTTCATGCACTATAATAACAATGC
* *
69882788 TATGACTCTATTTTGATAATAAAATAATTTCTCTAACTTTGGTTTTGTGGTCCCGAGACCACTAT
391 TATGACTCTATTTTGATAATAAAATAATTCCTCTAACTTTGATTTTGTGGTCCCGAGACCACTAT
69882853 TCCGACTAGCCCCACTATTCCGAGACCACT
456 TCCGACTAGCCCCACTATTCCGAGACCACT
* *
69882883 ATTTGAAAATTCTTAATTTGTGAGTGCTTCAAGTTACTGAAAATTTTTAAGTTCAAAACCCTCCT
1 ATTTGAAAATTCTTAATTTGTGAGTGCTTCAAGTTACTGAAAATTTTGAAGTTCAAAACCCCCCT
* * * *
69882948 ATGACTAGTAAAAATCGGTGAATAAGAAGAAAAATAAAAGGGATATGGCCTTTTTTTTATTTAAT
66 ATGACTAGTAAAAATCGATAAAGAAGAAGAAAAATAAAAGGGATATGGCCTTTGTTTTATTTAAT
69883013 TTAAAACTAGTCAAAATTGGTGACCAAACACCACCTAAATTTGACTTTCCCATCAAATTGCCTCC
131 TTAAAACTAGTCAAAATTGGTGACCAAACACCACCTAAATTTGACTTTCCCATCAAATTGCCTCC
*
69883078 TATGGCCGGCCACCCTAGTATCTAAGGGTCTAATTGCTCTTTAAAGACCCCCAATTTTGGTTCTC
196 TATGGCCGGCCACCCTAGTACCTAAGGGTCTAATTGCTCTTTAAAGACCCCCAATTTTGGTTCTC
*
69883143 TAGCTATTTAACATCTTTAGCAATCAATTTAAGACTTTTGCACTTTATGCGATTTAGTCCTTTTT
261 TAGCTATTTAACATCTTTAGCAATCAATTTAAGACTTTTGCACTTTATGCGATTTAGTCATTTTT
* *
69883208 CGTAATTGGGCTTACAAACGTTAAAATTAATCCACCAAATTTTTCATGCACTATAATAACCATGC
326 CGCAATTGGGCTTACAAACGTTAAAATTAATCCACCAAATTTTTCATGCACTATAATAACAATGC
* *
69883273 TATGGCTCTATTTTGATAATAAAATAATTCCTCTAACTTCAT-ATTTT-TGGTCTCGAGACCACT
391 TATGACTCTATTTTGATAATAAAATAATTCCTCTAACTT--TGATTTTGTGGTCCCGAGACCACT
* *
69883336 ATTCTGACTATCCCCA
454 ATTCCGACTAGCCCCA
69883352 AAATTAGGCT
Statistics
Matches: 431, Mismatches: 36, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
485 426 0.99
486 4 0.01
487 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.36
Consensus pattern (485 bp):
ATTTGAAAATTCTTAATTTGTGAGTGCTTCAAGTTACTGAAAATTTTGAAGTTCAAAACCCCCCT
ATGACTAGTAAAAATCGATAAAGAAGAAGAAAAATAAAAGGGATATGGCCTTTGTTTTATTTAAT
TTAAAACTAGTCAAAATTGGTGACCAAACACCACCTAAATTTGACTTTCCCATCAAATTGCCTCC
TATGGCCGGCCACCCTAGTACCTAAGGGTCTAATTGCTCTTTAAAGACCCCCAATTTTGGTTCTC
TAGCTATTTAACATCTTTAGCAATCAATTTAAGACTTTTGCACTTTATGCGATTTAGTCATTTTT
CGCAATTGGGCTTACAAACGTTAAAATTAATCCACCAAATTTTTCATGCACTATAATAACAATGC
TATGACTCTATTTTGATAATAAAATAATTCCTCTAACTTTGATTTTGTGGTCCCGAGACCACTAT
TCCGACTAGCCCCACTATTCCGAGACCACT
Done.