Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 207 of 290
Found at i:71393327 original size:12 final size:12
Alignment explanation
Indices: 71393305--71393343 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
71393295 ATAACACCCA
71393305 AACAACAAAAAT
1 AACAACAAAAAT
* * *
71393317 AAGAGCAAAAAA
1 AACAACAAAAAT
71393329 AACAACAAAAAT
1 AACAACAAAAAT
71393341 AAC
1 AAC
71393344 GGTAAAAACA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.74, C:0.15, G:0.05, T:0.05
Consensus pattern (12 bp):
AACAACAAAAAT
Found at i:71394427 original size:36 final size:36
Alignment explanation
Indices: 71394364--71394434 Score: 101
Period size: 34 Copynumber: 2.0 Consensus size: 36
71394354 TCCTCTTCTC
71394364 AAAATGTAAAATTTATATATTAAATATTAT-TTTTA
1 AAAATGTAAAATTTATATATTAAATATTATATTTTA
*
71394399 AAAAT-TAAAATTTATATATAATATATATTATATTTT
1 AAAATGTAAAATTTATATAT--TAAATATTATATTTT
71394435 CTCACTATGA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 14 0.44
35 5 0.16
36 9 0.28
37 4 0.12
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (36 bp):
AAAATGTAAAATTTATATATTAAATATTATATTTTA
Found at i:71394672 original size:19 final size:20
Alignment explanation
Indices: 71394650--71394687 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
71394640 ATGAACATTT
*
71394650 ACATAATCATTTAA-CATAC
1 ACATAATAATTTAATCATAC
*
71394669 ACATCATAATTTAATCATA
1 ACATAATAATTTAATCATA
71394688 TTGTCCCTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.34
Consensus pattern (20 bp):
ACATAATAATTTAATCATAC
Found at i:71396197 original size:29 final size:29
Alignment explanation
Indices: 71396165--71396252 Score: 78
Period size: 28 Copynumber: 3.1 Consensus size: 29
71396155 TATATTTTAA
71396165 AAAATGATAATAAATAAAATAATAACAAT
1 AAAATGATAATAAATAAAATAATAACAAT
* *
71396194 AAAATGATAA-AATTAAAAGAA-ATA-AAT
1 AAAATGATAATAAATAAAATAATA-ACAAT
* *
71396221 -AAGT-ATAATAAAAACAAATAATAACAAGT
1 AAAATGATAATAAATA-AAATAATAACAA-T
71396250 AAA
1 AAA
71396253 TAAACAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
25 4 0.09
26 6 0.13
27 10 0.22
28 13 0.28
29 11 0.24
30 2 0.04
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.22
Consensus pattern (29 bp):
AAAATGATAATAAATAAAATAATAACAAT
Found at i:71396211 original size:14 final size:14
Alignment explanation
Indices: 71396165--71396203 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
71396155 TATATTTTAA
*
71396165 AAAATGATAATAAAT
1 AAAATGATAA-CAAT
*
71396180 AAAATAATAACAAT
1 AAAATGATAACAAT
71396194 AAAATGATAA
1 AAAATGATAA
71396204 AATTAAAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (14 bp):
AAAATGATAACAAT
Found at i:71399295 original size:5 final size:5
Alignment explanation
Indices: 71399287--71399328 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
71399277 TTATTTACTT
71399287 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TA
71399329 ATATTAATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:71402561 original size:43 final size:43
Alignment explanation
Indices: 71402495--71402758 Score: 392
Period size: 43 Copynumber: 6.2 Consensus size: 43
71402485 TTATTTGAAA
* *
71402495 AAACGCCGCTAAAGATCATGACCTTTAGCGGCACTTTTTCCAC
1 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTTCCAC
* *
71402538 AAACACCGCTAAAGATCAAGACCTTTAGCGGCGC-TTTTCCAC
1 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTTCCAC
*
71402580 AAACGCCGCTAAAGTTCACGACCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTTCCAC
* * *
71402623 AAACGCCGCTAAAGATCACGACCTTTAACGACG-TTGTTTCTAC
1 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTT-TTTCCAC
71402666 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGC-TTTTCCAC
1 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTTCCAC
* *
71402708 AAACGCCGCTAAAGATCACGACCTTTAGCAGCGC-TTTTCTCAA
1 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTTC-CAC
71402751 AAACGCCG
1 AAACGCCG
71402759 TGAGAAAAGC
Statistics
Matches: 202, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
42 85 0.42
43 117 0.58
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTTCCAC
Found at i:71402638 original size:85 final size:85
Alignment explanation
Indices: 71402495--71402758 Score: 404
Period size: 85 Copynumber: 3.1 Consensus size: 85
71402485 TTATTTGAAA
* * * *
71402495 AAACGCCGCTAAAGATCATGACCTTTAGCGGCACTTTTTCCACAAACACCGCTAAAGATCAAGAC
1 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGATCACGAC
71402560 CTTTAGCGGCGCTTTTCCAC
66 CTTTAGCGGCGCTTTTCCAC
*
71402580 AAACGCCGCTAAAGTTCACGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGATCACGAC
1 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGATCACGAC
* * * *
71402645 CTTTAACGACGTTGTTTCTAC
66 CTTTAGCGGCGCT-TTTCCAC
71402666 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGC-TTTTCCACAAACGCCGCTAAAGATCACGAC
1 AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGATCACGAC
* *
71402730 CTTTAGCAGCGCTTTTCTCAA
66 CTTTAGCGGCGCTTTTC-CAC
71402751 AAACGCCG
1 AAACGCCG
71402759 TGAGAAAAGC
Statistics
Matches: 161, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
84 4 0.02
85 118 0.73
86 39 0.24
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.23
Consensus pattern (85 bp):
AAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGATCACGAC
CTTTAGCGGCGCTTTTCCAC
Found at i:71402727 original size:128 final size:128
Alignment explanation
Indices: 71402493--71402758 Score: 412
Period size: 128 Copynumber: 2.1 Consensus size: 128
71402483 GTTTATTTGA
* *
71402493 AAAAACGCCGCTAAAGATCATGACCTTTAGCGGCACTTTTTCCACAAACACCGCTAAAGATCAAG
1 AAAAACGCCGCTAAAGATCACGACCTTTAACGGCACTTTTTCCACAAACACCGCTAAAGATCAAG
* *
71402558 ACCTTTAGCGGCGCTTTTCCACAAACGCCGCTAAAGTTCACGACCTTTAGCGGCGCTTTT-TCC
66 ACCTTTAGCGGCGCTTTTCCACAAACGCCGCTAAAGATCACGACCTTTAGCAGCGCTTTTCT-C
* * *
71402621 ACAAACGCCGCTAAAGATCACGACCTTTAAC-G-ACGTTGTTTCTACAAACGCCGCTAAAGATCA
1 AAAAACGCCGCTAAAGATCACGACCTTTAACGGCAC-TT-TTTCCACAAACACCGCTAAAGATCA
*
71402684 CGACCTTTAGCGGCGCTTTTCCACAAACGCCGCTAAAGATCACGACCTTTAGCAGCGCTTTTCTC
64 AGACCTTTAGCGGCGCTTTTCCACAAACGCCGCTAAAGATCACGACCTTTAGCAGCGCTTTTCTC
71402749 AAAAACGCCG
1 AAAAACGCCG
71402759 TGAGAAAAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
126 2 0.02
127 3 0.02
128 120 0.95
129 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (128 bp):
AAAAACGCCGCTAAAGATCACGACCTTTAACGGCACTTTTTCCACAAACACCGCTAAAGATCAAG
ACCTTTAGCGGCGCTTTTCCACAAACGCCGCTAAAGATCACGACCTTTAGCAGCGCTTTTCTC
Found at i:71403808 original size:30 final size:30
Alignment explanation
Indices: 71403772--71403832 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
71403762 AGTTTAGCAA
71403772 AGAAAAAAAAAACCAATAAACATATCCACC
1 AGAAAAAAAAAACCAATAAACATATCCACC
71403802 AGAAAAAAAAAACCAATAAACATATCCACC
1 AGAAAAAAAAAACCAATAAACATATCCACC
71403832 A
1 A
71403833 TAGTTACTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.64, C:0.23, G:0.03, T:0.10
Consensus pattern (30 bp):
AGAAAAAAAAAACCAATAAACATATCCACC
Found at i:71406680 original size:105 final size:105
Alignment explanation
Indices: 71406498--71406708 Score: 413
Period size: 105 Copynumber: 2.0 Consensus size: 105
71406488 TCCAATGTCA
71406498 TATAATAAAAATATAATGATTCGATTTAATTCAATTCAGCAAAAAAGTTATACTTATCTAGTCAC
1 TATAATAAAAATATAATGATTCGATTTAATTCAATTCAGCAAAAAAGTTATACTTATCTAGTCAC
71406563 ATATGTTGTATAAGTAGATTTGAGGCATACTTTCATAAGG
66 ATATGTTGTATAAGTAGATTTGAGGCATACTTTCATAAGG
*
71406603 TATAATAAAAATATAATGATTCGATTTATTTCAATTCAGCAAAAAAGTTATACTTATCTAGTCAC
1 TATAATAAAAATATAATGATTCGATTTAATTCAATTCAGCAAAAAAGTTATACTTATCTAGTCAC
71406668 ATATGTTGTATAAGTAGATTTGAGGCATACTTTCATAAGG
66 ATATGTTGTATAAGTAGATTTGAGGCATACTTTCATAAGG
71406708 T
1 T
71406709 GATGAGAGAT
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
105 105 1.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (105 bp):
TATAATAAAAATATAATGATTCGATTTAATTCAATTCAGCAAAAAAGTTATACTTATCTAGTCAC
ATATGTTGTATAAGTAGATTTGAGGCATACTTTCATAAGG
Found at i:71407266 original size:14 final size:14
Alignment explanation
Indices: 71407240--71407284 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
71407230 TAAACCTATT
*
71407240 TAAACCCTAAACCA
1 TAAACCTTAAACCA
* *
71407254 TATATCTTAAACCA
1 TAAACCTTAAACCA
*
71407268 TAAACCTTAAACTA
1 TAAACCTTAAACCA
71407282 TAA
1 TAA
71407285 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:71407687 original size:41 final size:40
Alignment explanation
Indices: 71407442--71407701 Score: 331
Period size: 41 Copynumber: 6.4 Consensus size: 40
71407432 GTTATATAAC
* *
71407442 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTGGTT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC-AG-T
* **
71407484 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTTTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGC-TCAGT
* * *
71407525 CTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC-AGT
*
71407566 CTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCAGT
*
71407606 CTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCAGT
** ** **
71407646 TTTTAGCGGCGTTTTAGTAAAAAATGCCGCTGTTGCTCAGT
1 TTTTAGCGGCGTTTTA-CCAAAAGCGCCGCTAATGCTCAGT
71407687 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
71407702 TTGTAAAACG
Statistics
Matches: 199, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
40 57 0.29
41 106 0.53
42 35 0.18
43 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.33
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCAGT
Found at i:71407718 original size:81 final size:81
Alignment explanation
Indices: 71407443--71407701 Score: 358
Period size: 81 Copynumber: 3.2 Consensus size: 81
71407433 TTATATAACT
* *
71407443 TTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTGGTTTTTTAGTGGCGTTTTACCAAAAGC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG-TTTTTAGCGGCGTTTTACCAAAAGC
**
71407508 GCCGCTAATGCTTTGGTC
65 GCCGCTAATGC-TCAGTC
* *
71407526 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCTGGTCTTTAGCGGCGTTTTACCAAAAGCG
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCG
71407591 CCGCTAATGCTCAGTC
66 CCGCTAATGCTCAGTC
* ** **
71407607 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC-AGTTTTTAGCGGCGTTTTAGTAAAAAAT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTA-CCAAAAGC
** *
71407671 GCCGCTGTTGCTCAGTT
65 GCCGCTAATGCTCAGTC
71407688 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
71407702 TTGTAAAACG
Statistics
Matches: 159, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
80 17 0.11
81 71 0.45
82 34 0.21
83 37 0.23
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.33
Consensus pattern (81 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCG
CCGCTAATGCTCAGTC
Found at i:71408033 original size:9 final size:10
Alignment explanation
Indices: 71408013--71408041 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
71408003 ATTACATGTT
71408013 TGAATAGAAA
1 TGAATAGAAA
71408023 TGAAT-GAAA
1 TGAATAGAAA
71408032 TGAATAGAAA
1 TGAATAGAAA
71408042 AAGAGAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (10 bp):
TGAATAGAAA
Found at i:71417004 original size:15 final size:14
Alignment explanation
Indices: 71416984--71417016 Score: 57
Period size: 14 Copynumber: 2.3 Consensus size: 14
71416974 ATCTAAATTA
71416984 TTTTATTTTGTTTTG
1 TTTTATTTT-TTTTG
71416999 TTTTATTTTTTTTG
1 TTTTATTTTTTTTG
71417013 TTTT
1 TTTT
71417017 CTCTCTTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (14 bp):
TTTTATTTTTTTTG
Found at i:71420745 original size:28 final size:28
Alignment explanation
Indices: 71420705--71420759 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
71420695 GTTTTACAAG
*
71420705 AAGTTGGGATTAAGCACAGGGTGTCTTC
1 AAGTTGGGATTAAACACAGGGTGTCTTC
*
71420733 AAGTTGGGATTAAACATAGGGTGTCTT
1 AAGTTGGGATTAAACACAGGGTGTCTT
71420760 GTCCTCACAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.27, C:0.11, G:0.31, T:0.31
Consensus pattern (28 bp):
AAGTTGGGATTAAACACAGGGTGTCTTC
Found at i:71422640 original size:25 final size:25
Alignment explanation
Indices: 71422612--71422659 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
71422602 ATAAATAGAT
*
71422612 CTAAA-TTTTTAAATTTAAAACATCA
1 CTAAATTTTTTAAA-ATAAAACATCA
71422637 CTAAATTTTTTAAAATAAAACAT
1 CTAAATTTTTTAAAATAAAACAT
71422660 AGAAAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (25 bp):
CTAAATTTTTTAAAATAAAACATCA
Found at i:71427383 original size:21 final size:21
Alignment explanation
Indices: 71427357--71427397 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
71427347 ATCTGCTCAA
* *
71427357 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
71427378 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
71427398 TCGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:71430906 original size:30 final size:30
Alignment explanation
Indices: 71430870--71430930 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
71430860 TAATTGGAGA
*
71430870 AAAAGTAAAGTTTATTTTTGATAAGTTTTT
1 AAAAGTAAAGTTTATTTTTGAGAAGTTTTT
*
71430900 AAAAGTAAATTTTATTTTTGAGAAGTTTTT
1 AAAAGTAAAGTTTATTTTTGAGAAGTTTTT
71430930 A
1 A
71430931 TGGCGAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (30 bp):
AAAAGTAAAGTTTATTTTTGAGAAGTTTTT
Found at i:71433861 original size:40 final size:40
Alignment explanation
Indices: 71433812--71433954 Score: 182
Period size: 40 Copynumber: 3.5 Consensus size: 40
71433802 TTGACGACAA
*
71433812 TTCGACTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
*
71433852 TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAG-TAAGT
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGAT-AGC
* * *
71433892 TTCGGCTATATATGACACTTAGTGTGCGAGATT-AAAATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGC--GATTCAAGATAGC
*
71433933 TTTGGCTATGTATTGGCACTTA
1 TTCGGCTATGTA-TGGCACTTA
71433955 ATGTACGAGA
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
39 1 0.01
40 61 0.69
41 14 0.16
42 13 0.15
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.35
Consensus pattern (40 bp):
TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
Found at i:71437211 original size:48 final size:47
Alignment explanation
Indices: 71437156--71437339 Score: 152
Period size: 48 Copynumber: 3.8 Consensus size: 47
71437146 GGTAAATTGT
* * *
71437156 CGATGCCATGTCCTAAACATGGTCTTACACTGGTTCACATGTCGAGGC
1 CGATGCCATGTCC-AAACATGGTCTTACACTGGCTCACATCTCAAGGC
* * * * * * *
71437204 CGATGCCATGTCCCAGATATGGTCTTACTCTAGCTCTCGTCTCAATGC
1 CGATGCCATGT-CCAAACATGGTCTTACACTGGCTCACATCTCAAGGC
* * * ** **
71437252 CGATGCCATGTTCCAAACATGGTCTTAAACTGGCTCTCTTAACATTGC
1 CGATGCCATG-TCCAAACATGGTCTTACACTGGCTCACATCTCAAGGC
* * *
71437300 TGATGCCATGTTCCAAACATGGTCTTACACTAGCACACAT
1 CGATGCCATG-TCCAAACATGGTCTTACACTGGCTCACAT
71437340 ATCACCCAAA
Statistics
Matches: 109, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
48 106 0.97
49 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCAAACATGGTCTTACACTGGCTCACATCTCAAGGC
Found at i:71443125 original size:100 final size:100
Alignment explanation
Indices: 71443011--71443244 Score: 468
Period size: 100 Copynumber: 2.3 Consensus size: 100
71443001 AAAGCTATCT
71443011 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATAATTTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATAATTTGGTACACGTAGTAGCC
71443076 TGCACTTAGTACTACACACGTGATCACAATTTTCG
66 TGCACTTAGTACTACACACGTGATCACAATTTTCG
71443111 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATAATTTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATAATTTGGTACACGTAGTAGCC
71443176 TGCACTTAGTACTACACACGTGATCACAATTTTCG
66 TGCACTTAGTACTACACACGTGATCACAATTTTCG
71443211 GGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACA
71443245 CGTGACCTCA
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 134 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATAATTTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAATTTTCG
Found at i:71443136 original size:51 final size:50
Alignment explanation
Indices: 71443010--71443259 Score: 300
Period size: 51 Copynumber: 5.0 Consensus size: 50
71443000 CAAAGCTATC
*
71443010 TGGTACGCATAGTAGCCTGCACTTAGTACTACACA--TGCAAC-CAATAATT
1 TGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTG-ATCACAAT-ATT
* *
71443059 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAAT-TT
1 TGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCACAATATT
*
71443108 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA--TGCAAC-CAATAATT
1 T--GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTG-ATCACAAT-ATT
* *
71443159 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAAT-TT
1 TGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCACAATATT
71443208 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTCACAATA
1 T--GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGA--TCACAATA
71443260 GTTCATTTGT
Statistics
Matches: 174, Mismatches: 11, Indels: 27
0.82 0.05 0.13
Matches are distributed among these distances:
49 77 0.44
50 6 0.03
51 84 0.48
53 7 0.04
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCACAATATT
Found at i:71447999 original size:48 final size:48
Alignment explanation
Indices: 71447947--71448077 Score: 163
Period size: 48 Copynumber: 2.7 Consensus size: 48
71447937 TATGTCGAGG
* * * **
71447947 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCCCTCGTCTCAATA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCTCATAACAATA
* * * * * *
71447995 CCGATTCCATGTTCCAAACATGGTCTTAAACTGGCTCTCATAACATTG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCTCATAACAATA
71448043 CCGATGCCATGTTCCAAACATGGTCTTACACTAGC
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGC
71448078 ACACATATCA
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCTCATAACAATA
Found at i:71448866 original size:24 final size:24
Alignment explanation
Indices: 71448830--71448927 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
71448820 AAGGTTGTCA
*
71448830 GGAGAAGAGTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
71448854 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
71448878 AGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
* *
71448902 TGAGAAGATTTAGGAGATGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
71448927 G
1 G
71448928 AGCAGGAGTT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
24 62 0.97
25 2 0.03
ACGTcount: A:0.38, C:0.04, G:0.38, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:71455740 original size:31 final size:31
Alignment explanation
Indices: 71455699--71455762 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
71455689 CCTTTTCATA
*
71455699 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
71455730 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
71455761 TT
1 TT
71455763 ACTGTAAACA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:71456001 original size:24 final size:24
Alignment explanation
Indices: 71455955--71456098 Score: 182
Period size: 24 Copynumber: 6.0 Consensus size: 24
71455945 GCTTTATCAT
* *
71455955 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* * * *
71455980 ATACCTGGGGCAAAATCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
71456004 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
71456028 ATAACTGAGGCATAAGCACTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
71456052 ATAACTGAGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
71456076 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
71456099 TCACTTCCTC
Statistics
Matches: 106, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
24 96 0.91
25 10 0.09
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:71456170 original size:20 final size:20
Alignment explanation
Indices: 71456147--71456193 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
71456137 TTATGAATAC
71456147 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
71456167 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
71456187 ACCATGT
1 ATCATGT
71456194 TTATCAAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:71456257 original size:25 final size:25
Alignment explanation
Indices: 71456229--71456276 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
71456219 ATACATAAAC
* * *
71456229 CCTAGGGGTATAACGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
71456254 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
71456277 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:71463866 original size:31 final size:31
Alignment explanation
Indices: 71463825--71463888 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
71463815 CCTTTTCATA
* *
71463825 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
**
71463856 TTTCAAATTTCATATTACTGGGCCAAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
71463887 TT
1 TT
71463889 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCAAAGCCT
Found at i:71464132 original size:24 final size:24
Alignment explanation
Indices: 71464081--71464224 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
71464071 GCTTTATCAT
* *
71464081 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
71464106 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
71464130 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
71464154 ACAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
71464178 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
71464202 ATAACTTGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
71464225 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
24 99 0.89
25 12 0.11
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:71464296 original size:20 final size:20
Alignment explanation
Indices: 71464273--71464339 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
71464263 TTATGAATAC
71464273 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
71464293 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
71464313 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
71464333 ACCATGT
1 ATCATGT
71464340 TTATCAAATC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:71464303 original size:40 final size:39
Alignment explanation
Indices: 71464259--71464339 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 39
71464249 CCCAACCCAA
*
71464259 TGCATTATGAATACA-TCATGTGCATATCATACATATCATG
1 TGCA-TAT-AATACAGTCATGTGCATATCATACATACCATG
*
71464299 TGCATATCATACATGTCATGTGCATATCATACATACCATG
1 TGCATATAATACA-GTCATGTGCATATCATACATACCATG
71464339 T
1 T
71464340 TTATCAAATC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
38 5 0.14
39 3 0.08
40 29 0.78
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (39 bp):
TGCATATAATACAGTCATGTGCATATCATACATACCATG
Found at i:71464304 original size:11 final size:11
Alignment explanation
Indices: 71464273--71464328 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
71464263 TTATGAATAC
71464273 ATCATGTGCAT
1 ATCATGTGCAT
*
71464284 ATCA--TACAT
1 ATCATGTGCAT
71464293 ATCATGTGCAT
1 ATCATGTGCAT
*
71464304 ATCA--TACAT
1 ATCATGTGCAT
*
71464313 GTCATGTGCAT
1 ATCATGTGCAT
71464324 ATCAT
1 ATCAT
71464329 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:71467872 original size:24 final size:24
Alignment explanation
Indices: 71467845--71467942 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
71467835 AAGGCTGTCA
*
71467845 GGAGAAGAGTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
71467869 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
71467893 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
71467917 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
71467942 G
1 G
71467943 AGCAGGAGTT
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
24 65 0.96
25 3 0.04
ACGTcount: A:0.36, C:0.05, G:0.40, T:0.19
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:71469639 original size:33 final size:34
Alignment explanation
Indices: 71469562--71469642 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
71469552 TATGGGCCAT
* *
71469562 ACTGTTATCTGAATAAGGGGCTAAGGCCTAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * **
71469596 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
71469629 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
71469643 GGGCTTAGGC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 12 0.32
33 14 0.38
34 11 0.30
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:71476359 original size:14 final size:14
Alignment explanation
Indices: 71476340--71476369 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
71476330 TGATTGTTTT
71476340 TAATCTAATTTAAC
1 TAATCTAATTTAAC
71476354 TAATCTAATTTAAC
1 TAATCTAATTTAAC
71476368 TA
1 TA
71476370 CAAACGCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATCTAATTTAAC
Found at i:71479484 original size:21 final size:21
Alignment explanation
Indices: 71479460--71479499 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
71479450 TGAATTTAAC
*
71479460 ATCAATTTAATTCATTTCATA
1 ATCAATTTAATTCAATTCATA
71479481 ATCAATTTAATTCAATTCA
1 ATCAATTTAATTCAATTCA
71479500 CATCCTAGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.45
Consensus pattern (21 bp):
ATCAATTTAATTCAATTCATA
Found at i:71482718 original size:49 final size:47
Alignment explanation
Indices: 71482662--71482922 Score: 196
Period size: 49 Copynumber: 5.5 Consensus size: 47
71482652 TGTGTGTGCT
* *
71482662 AGTGTAAGACCTGTCTGGGACATGACATCGACTCCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACT-AGATAG-TGAGAGCC
* * * * **
71482711 AGTGTAAGACCTGTCTGGGACATGGCATCGGCTTG--AGT-TGTGTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTAGATAGTGAGAGCC
* * * * *
71482755 AGTGTAAGACCTGTCTAGGACATGGCA-CCACACAGATAAATGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-TAGAT-AGTGAGAGCC
* * * *
71482803 AGTGTAAGACCTGTTTGGGACATGGCATCAGCCTCGAT-GTTTGCA-AGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GACTAGATAG--TG-AGAGCC
*
71482852 AGTGTAAGACCTATCTGGGACATGGCATCGACTTAG-T-GTGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-TAGATAGTGAGAGCC
* *
71482898 AGTGTAAGACCATGTTTGGAACATG
1 AGTGTAAGACC-TGTCTGGGACATG
71482923 TCGTTGGCAT
Statistics
Matches: 166, Mismatches: 33, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
43 2 0.01
44 29 0.17
45 2 0.01
46 18 0.11
47 12 0.07
48 33 0.20
49 68 0.41
50 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACTAGATAGTGAGAGCC
Found at i:71482822 original size:92 final size:93
Alignment explanation
Indices: 71482656--71482831 Score: 264
Period size: 92 Copynumber: 1.9 Consensus size: 93
71482646 GGGTGATGTG
* * * * *
71482656 TGTGCTAGTGTAAGACCTGTCTGGGACATGACATCGACTCCGATAGATGAGAGCCAGTGTAAGAC
1 TGTGCTAGTGTAAGACCTGTCTAGGACATGACATCCACACAGATAAATGAGAGCCAGTGTAAGAC
71482721 CTGTCTGGGACATGGCATCGGCTTGAGT
66 CTGTCTGGGACATGGCATCGGCTTGAGT
* * *
71482749 TGTGTTAGTGTAAGACCTGTCTAGGACATGGCA-CCACACAGATAAATGAGAGCTAGTGTAAGAC
1 TGTGCTAGTGTAAGACCTGTCTAGGACATGACATCCACACAGATAAATGAGAGCCAGTGTAAGAC
*
71482813 CTGTTTGGGACATGGCATC
66 CTGTCTGGGACATGGCATC
71482832 AGCCTCGATG
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
92 44 0.59
93 30 0.41
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (93 bp):
TGTGCTAGTGTAAGACCTGTCTAGGACATGACATCCACACAGATAAATGAGAGCCAGTGTAAGAC
CTGTCTGGGACATGGCATCGGCTTGAGT
Found at i:71490476 original size:49 final size:48
Alignment explanation
Indices: 71490367--71490683 Score: 178
Period size: 49 Copynumber: 6.6 Consensus size: 48
71490357 GATGTGTGTA
* *
71490367 CTAGTGTAAGACCTGTCTAGGTCATGGCATCGGCACC-GATAG--ATGAGAG
1 CTAGTGTAAGACCTGTCTAGGACATGGCATC-G-ACCTTA-AGATATGA-AG
* *
71490416 CCAGTGGAAGACCTGTCTAGGACATGGCATCGACCTTAAGATATGCAAG
1 CTAGTGTAAGACCTGTCTAGGACATGGCATCGACCTTAAGATATG-AAG
* * * * * * *
71490465 CTAGTGTAAGACCTGTCTGGGACATGGCATTG-GCTTGAGGTGTG--T
1 CTAGTGTAAGACCTGTCTAGGACATGGCATCGACCTTAAGATATGAAG
* * *
71490510 C-AGTGTAAGACCTGTTTGGGACATGGCATC-AAC--ACAGATTAGTGAGAG
1 CTAGTGTAAGACCTGTCTAGGACATGGCATCGACCTTA-AGA-TA-TGA-AG
* * * *
71490558 CTAGTGGAAGACCTGTCTAGGACATGGCATCGGCCTCGATG-TATGAAAG
1 CTAGTGTAAGACCTGTCTAGGACATGGCATCGACCT-TAAGATATG-AAG
* * * * *
71490607 TCT-GTGTAAAACTTGTCTGGGACATGGCATCGA-CTT-AGATGTGGAG
1 -CTAGTGTAAGACCTGTCTAGGACATGGCATCGACCTTAAGATATGAAG
* *
71490653 CCAGTGTAAGACCATGT-TTGGAACATGGCAT
1 CTAGTGTAAGACC-TGTCTAGG-ACATGGCAT
71490684 TGGCATCATA
Statistics
Matches: 207, Mismatches: 39, Indels: 46
0.71 0.13 0.16
Matches are distributed among these distances:
43 2 0.01
44 29 0.14
45 4 0.02
46 14 0.07
47 20 0.10
48 13 0.06
49 116 0.56
50 7 0.03
52 1 0.00
53 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (48 bp):
CTAGTGTAAGACCTGTCTAGGACATGGCATCGACCTTAAGATATGAAG
Found at i:71490539 original size:93 final size:94
Alignment explanation
Indices: 71490367--71490687 Score: 278
Period size: 98 Copynumber: 3.4 Consensus size: 94
71490357 GATGTGTGTA
* * * * * *
71490367 CTAGTGTAAGACCTGTCTAGGTCATGGCATCGGCACCGATAG-ATGAGAGCCAGTGGAAGACCTG
1 CTAGTGTAAGACCTGTCTGGGACATGGCATTGGC-TCGAT-GTATGA-AGTCAGTGTAAGACCTG
*
71490431 TCTAGGACATGGCATCGACCTTAAGATATGCAAG
63 TCTGGGACATGGCATCGA-CTTAAGATATG-AAG
* * * *
71490465 CTAGTGTAAGACCTGTCTGGGACATGGCATTGGCTTGA-G-GTG-TGTCAGTGTAAGACCTGTTT
1 CTAGTGTAAGACCTGTCTGGGACATGGCATTGGCTCGATGTATGAAGTCAGTGTAAGACCTGTCT
*
71490527 GGGACATGGCATCAAC--ACAGATTAGTGAGAG
66 GGGACATGGCATCGACTTA-AGA-TA-TGA-AG
* * * * * *
71490558 CTAGTGGAAGACCTGTCTAGGACATGGCATCGGCCTCGATGTATGAAAGTCTGTGTAAAACTTGT
1 CTAGTGTAAGACCTGTCTGGGACATGGCATTGG-CTCGATGTATG-AAGTCAGTGTAAGACCTGT
* *
71490623 CTGGGACATGGCATCGACTT-AGATGTGGAG
64 CTGGGACATGGCATCGACTTAAGATATGAAG
* * *
71490653 CCAGTGTAAGACCATGTTTGGAACATGGCATTGGC
1 CTAGTGTAAGACC-TGTCTGGGACATGGCATTGGC
71490688 ATCATACCTT
Statistics
Matches: 180, Mismatches: 31, Indels: 27
0.76 0.13 0.11
Matches are distributed among these distances:
90 1 0.01
91 3 0.02
92 4 0.02
93 63 0.35
94 4 0.02
95 18 0.10
96 20 0.11
97 3 0.02
98 64 0.36
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (94 bp):
CTAGTGTAAGACCTGTCTGGGACATGGCATTGGCTCGATGTATGAAGTCAGTGTAAGACCTGTCT
GGGACATGGCATCGACTTAAGATATGAAG
Found at i:71490625 original size:142 final size:143
Alignment explanation
Indices: 71490360--71490683 Score: 386
Period size: 142 Copynumber: 2.2 Consensus size: 143
71490350 TTTGGGTGAT
* * * ** *
71490360 GTGTGTACTAGTGTAAGACCTGTCTAGGTCATGGCATCGGCACCGATAGATGAGAGCCAGTGGAA
1 GTGTGT-C-AGTGTAAGACCTGTTTGGGACATGGCATCAACACAGATAGATGAGAGCCAGTGGAA
* * *
71490425 GACCTGTCTAGGACATGGCATCGACCTTAAGATATGCAAGCTAGTGTAAGACCTGTCTGGGACAT
64 GACCTGTCTAGGACATGGCATCGACCTGAAGATATGAAAGCTAGTGTAAAACCTGTCTGGGACAT
* *
71490490 GGCATTGGCTT-GAG
129 GGCATCGACTTAGAG
*
71490504 GTGTGTCAGTGTAAGACCTGTTTGGGACATGGCATCAACACAGATTAG-TGAGAGCTAGTGGAAG
1 GTGTGTCAGTGTAAGACCTGTTTGGGACATGGCATCAACACAGA-TAGATGAGAGCCAGTGGAAG
* * *
71490568 ACCTGTCTAGGACATGGCATCGGCCTCGATG-TATGAAAGTCT-GTGTAAAACTTGTCTGGGACA
65 ACCTGTCTAGGACATGGCATCGACCT-GAAGATATGAAAG-CTAGTGTAAAACCTGTCTGGGACA
*
71490631 TGGCATCGACTTAGAT
128 TGGCATCGACTTAGAG
* * *
71490647 GTGGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
1 GT-GTGTCAGTGTAAGACC-TGTTTGGGACATGGCAT
71490684 TGGCATCATA
Statistics
Matches: 155, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
142 107 0.69
143 12 0.08
144 20 0.13
145 16 0.10
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (143 bp):
GTGTGTCAGTGTAAGACCTGTTTGGGACATGGCATCAACACAGATAGATGAGAGCCAGTGGAAGA
CCTGTCTAGGACATGGCATCGACCTGAAGATATGAAAGCTAGTGTAAAACCTGTCTGGGACATGG
CATCGACTTAGAG
Found at i:71498005 original size:21 final size:21
Alignment explanation
Indices: 71497967--71498010 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
71497957 GAATTTAATG
* * *
71497967 TCAATTTAGTCCATTTCATAT
1 TCAATTTAATCCAATTCACAT
*
71497988 TCAATTTAATTCAATTCACAT
1 TCAATTTAATCCAATTCACAT
71498009 TC
1 TC
71498011 TAGTCAAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.20, G:0.02, T:0.45
Consensus pattern (21 bp):
TCAATTTAATCCAATTCACAT
Found at i:71502265 original size:12 final size:14
Alignment explanation
Indices: 71502236--71502265 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
71502226 TAACTTGGGT
71502236 CACACGGCCGACCA
1 CACACGGCCGACCA
71502250 CACACGGCCGACCA
1 CACACGGCCGACCA
71502264 CA
1 CA
71502266 AGCCCATGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.50, G:0.20, T:0.00
Consensus pattern (14 bp):
CACACGGCCGACCA
Found at i:71504067 original size:16 final size:16
Alignment explanation
Indices: 71504046--71504083 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
71504036 AAGAAGAAGT
71504046 AGATGTTATTTTGAAA
1 AGATGTTATTTTGAAA
71504062 AGATGTTATTTTGAAA
1 AGATGTTATTTTGAAA
71504078 AGATGT
1 AGATGT
71504084 CATACGTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.21, T:0.42
Consensus pattern (16 bp):
AGATGTTATTTTGAAA
Found at i:71506595 original size:43 final size:42
Alignment explanation
Indices: 71506530--71506659 Score: 147
Period size: 43 Copynumber: 3.0 Consensus size: 42
71506520 ATATTGTATA
* *
71506530 ATGCCAATGTCCCAGATGTGGTCTTACATGCT-ATCACATATCG
1 ATGCCAATGTCCCAGA-ATGGTCTTACACG-TAATCACATATCG
*
71506573 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATTG
1 ATGCCAATGTCCCAGA-ATGGTCTTACACGTAATCACATATCG
* * *
71506616 ATGCCAACGTCCCAGAAGTGGTCTTATACG-AGAACACATATCG
1 ATGCCAATGTCCCAGAA-TGGTCTTACACGTA-ATCACATATCG
71506659 A
1 A
71506660 AAATCCTATG
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 3 0.04
43 73 0.96
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGAATGGTCTTACACGTAATCACATATCG
Found at i:71511894 original size:46 final size:46
Alignment explanation
Indices: 71511837--71512791 Score: 1756
Period size: 46 Copynumber: 20.7 Consensus size: 46
71511827 AACTCGCCCC
* * * **
71511837 TAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGCTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
71511883 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
71511931 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71511976 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512022 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512068 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512114 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512160 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512206 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512252 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512298 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512344 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512390 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512436 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512482 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512528 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512574 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512620 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512666 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512712 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71512758 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
71512792 TGCTCAACCA
Statistics
Matches: 887, Mismatches: 13, Indels: 18
0.97 0.01 0.02
Matches are distributed among these distances:
42 2 0.00
43 4 0.00
44 1 0.00
45 2 0.00
46 842 0.95
47 29 0.03
48 2 0.00
49 1 0.00
50 3 0.00
51 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:71513253 original size:30 final size:30
Alignment explanation
Indices: 71513219--71513277 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
71513209 TTTAATACGC
71513219 ACTTTGGAAAAATTACACTTTTGCCCCTAA
1 ACTTTGGAAAAATTACACTTTTGCCCCTAA
* * *
71513249 ACTTTTGCATAATTACACTTTTGCCCCTA
1 ACTTTGGAAAAATTACACTTTTGCCCCTA
71513278 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
ACTTTGGAAAAATTACACTTTTGCCCCTAA
Found at i:71514845 original size:33 final size:33
Alignment explanation
Indices: 71514802--71514869 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
71514792 CTACCAATGG
71514802 TAAGTACCTTTCCCAACTATCTTGAAATTCCAA
1 TAAGTACCTTTCCCAACTATCTTGAAATTCCAA
*
71514835 TAAGTTCCTTTCCCAACTATCTTGAAATTCCAA
1 TAAGTACCTTTCCCAACTATCTTGAAATTCCAA
71514868 TA
1 TA
71514870 CGCAACATCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (33 bp):
TAAGTACCTTTCCCAACTATCTTGAAATTCCAA
Found at i:71520335 original size:46 final size:46
Alignment explanation
Indices: 71520271--71521173 Score: 1752
Period size: 46 Copynumber: 19.6 Consensus size: 46
71520261 TACATTTCAC
* *
71520271 GAACTCGGACTCAGCTCAACGAGTTCGAACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
*** *
71520317 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71520363 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71520409 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71520455 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71520501 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71520547 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71520593 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71520639 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71520685 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71520731 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71520777 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71520823 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71520869 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71520915 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71520961 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71521007 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71521053 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71521099 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
71521145 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
71521174 TGCTCAACCA
Statistics
Matches: 847, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 847 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
Found at i:71521633 original size:30 final size:30
Alignment explanation
Indices: 71521599--71521658 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
71521589 ATTTAATACG
71521599 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
71521629 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
71521659 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:71522344 original size:51 final size:51
Alignment explanation
Indices: 71522268--71522369 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
71522258 CTAAAAACTT
71522268 TTAGGATGCAAATTTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTA
1 TTAGGATGCAAATTTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTA
71522319 TTAGGATGCAAATTTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTA
1 TTAGGATGCAAATTTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTA
71522370 AGCACTTTAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (51 bp):
TTAGGATGCAAATTTTGCAACTTATTCGATTTAGTCCCTACTTTCAATTTA
Found at i:71525537 original size:34 final size:34
Alignment explanation
Indices: 71525490--71525560 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
71525480 ATCACAAATT
* *
71525490 CTTTCCCAGATTCCGGTTGTACTAACACTGGTGC
1 CTTTCCCAGATTCCGGTTATACTAAAACTGGTGC
* *
71525524 CTTTCCCTA-ATTCCTGTTATACTAAAATTGGTGC
1 CTTTCCC-AGATTCCGGTTATACTAAAACTGGTGC
71525558 CTT
1 CTT
71525561 GGTTAATAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 31 0.97
35 1 0.03
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.38
Consensus pattern (34 bp):
CTTTCCCAGATTCCGGTTATACTAAAACTGGTGC
Found at i:71527720 original size:50 final size:50
Alignment explanation
Indices: 71527651--71527751 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
71527641 AATTAGGGCC
71527651 TAATCGGAATAGTGGTTTCGTAACCATAAATCTGAGATAGAAATAATTAT
1 TAATCGGAATAGTGGTTTCGTAACCATAAATCTGAGATAGAAATAATTAT
71527701 TAATCGGAATAGTGGTTTCGTAACCATAAATCTGAGATAGAAATAATTAT
1 TAATCGGAATAGTGGTTTCGTAACCATAAATCTGAGATAGAAATAATTAT
71527751 T
1 T
71527752 TTATAATTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.33
Consensus pattern (50 bp):
TAATCGGAATAGTGGTTTCGTAACCATAAATCTGAGATAGAAATAATTAT
Found at i:71529019 original size:46 final size:46
Alignment explanation
Indices: 71528969--71529143 Score: 298
Period size: 46 Copynumber: 3.8 Consensus size: 46
71528959 TGGTTGAGCA
71528969 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
71529015 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
71529061 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71529107 CCCGAGA-TCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGA-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71529144 GCGGGTTACA
Statistics
Matches: 124, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
46 123 0.99
47 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71536594 original size:46 final size:46
Alignment explanation
Indices: 71536544--71536719 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
71536534 TGGTTGAGCA
71536544 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71536590 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71536635 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71536683 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71536720 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71536700 original size:93 final size:93
Alignment explanation
Indices: 71536541--71536712 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71536531 GGATGGTTGA
* *
71536541 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71536606 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
71536634 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71536699 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
71536713 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71572808 original size:34 final size:34
Alignment explanation
Indices: 71572765--71572834 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
71572755 AATCTATCCA
71572765 AGGAGAAATCCATACGTACTGGAATAAAGTGTGC
1 AGGAGAAATCCATACGTACTGGAATAAAGTGTGC
*
71572799 AGGAGAAATCCATATGTACTGGAATAAAGTGTGC
1 AGGAGAAATCCATACGTACTGGAATAAAGTGTGC
71572833 AG
1 AG
71572835 ACTTTGTCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.13, G:0.27, T:0.21
Consensus pattern (34 bp):
AGGAGAAATCCATACGTACTGGAATAAAGTGTGC
Found at i:71587817 original size:22 final size:25
Alignment explanation
Indices: 71587786--71587840 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
71587776 ATATTGATTT
*
71587786 TAATT-TTTTATTT-T-TAATT-AA
1 TAATTATTTTATTTATAAAATTAAA
71587807 TAATTATTTTATTTATAAAATTAAA
1 TAATTATTTTATTTATAAAATTAAA
71587832 TAATTATTT
1 TAATTATTT
71587841 CAAATATAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 5 0.17
22 8 0.28
23 1 0.03
24 4 0.14
25 11 0.38
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (25 bp):
TAATTATTTTATTTATAAAATTAAA
Found at i:71587848 original size:25 final size:24
Alignment explanation
Indices: 71587801--71587849 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
71587791 TTTTATTTTT
* **
71587801 AATTAATAATTATTTTATTTATAA
1 AATTAATAATTATTTCAAATATAA
71587825 AATTAAATAATTATTTCAAATATAA
1 AATT-AATAATTATTTCAAATATAA
71587850 TTATTTTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
AATTAATAATTATTTCAAATATAA
Found at i:71589490 original size:26 final size:26
Alignment explanation
Indices: 71589461--71589510 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
71589451 TACATGTTTA
71589461 ATTTTAAACTAATTTTTA-AATAATGT
1 ATTTTAAA-TAATTTTTATAATAATGT
* *
71589487 ATTTTTAATTATTTTTATAATAAT
1 ATTTTAAATAATTTTTATAATAAT
71589511 TTTTCTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (26 bp):
ATTTTAAATAATTTTTATAATAATGT
Found at i:71589495 original size:22 final size:21
Alignment explanation
Indices: 71589470--71589531 Score: 54
Period size: 25 Copynumber: 2.7 Consensus size: 21
71589460 AATTTTAAAC
71589470 TAATTTTTAAATAATGTATTT-T
1 TAATTTTTAAATAAT-T-TTTCT
71589492 TAATTATTTTTATAATAATTTTTCT
1 T-A--ATTTTTA-AATAATTTTTCT
*
71589517 TATTTTTTAAATAAT
1 TAATTTTTAAATAAT
71589532 ATATAAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
21 6 0.18
22 7 0.21
23 1 0.03
24 4 0.12
25 10 0.29
26 6 0.18
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
TAATTTTTAAATAATTTTTCT
Found at i:71596642 original size:5 final size:6
Alignment explanation
Indices: 71596618--71596651 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
71596608 TATATAATAA
71596618 TATTTAT TATTTT TATTTT TATTTT TATTTT TAT
1 TATTT-T TATTTT TATTTT TATTTT TATTTT TAT
71596652 ATGAAATATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 22 0.81
7 5 0.19
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (6 bp):
TATTTT
Found at i:71596969 original size:30 final size:32
Alignment explanation
Indices: 71596933--71597013 Score: 107
Period size: 32 Copynumber: 2.6 Consensus size: 32
71596923 TTTTTTGGTC
*
71596933 TAATTTGGTACTC-AAATTTGACAC-TTTTCT
1 TAATTTGGTACTCTAAACTTGACACTTTTTCT
71596963 TAATTTGGTAC-CTAAACTTGACACTTTTTTCT
1 TAATTTGGTACTCTAAACTTGACAC-TTTTTCT
*
71596995 TAAGTTGGTACT-TAAACTT
1 TAATTTGGTACTCTAAACTT
71597014 TTTGAGGATT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
29 1 0.02
30 21 0.47
32 23 0.51
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (32 bp):
TAATTTGGTACTCTAAACTTGACACTTTTTCT
Found at i:71597268 original size:24 final size:23
Alignment explanation
Indices: 71597233--71597286 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
71597223 TTAATTTTAG
* * *
71597233 TTTAATTTAAATATTTAATTAT-T
1 TTTAATTAAAATAATGAATT-TCT
71597256 TTTAATTAAAAATAATGAATTTCT
1 TTTAATT-AAAATAATGAATTTCT
71597280 TTTAATT
1 TTTAATT
71597287 TGGGGTTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 8 0.31
24 18 0.69
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (23 bp):
TTTAATTAAAATAATGAATTTCT
Found at i:71597563 original size:59 final size:59
Alignment explanation
Indices: 71597471--71597630 Score: 171
Period size: 59 Copynumber: 2.7 Consensus size: 59
71597461 ATTTAGGTAT
* *
71597471 CAAATTGAACCTAAAAAAGTTTAGGTACTAAATTAAGAAAAACTGTCAAGTTCAAGTAC
1 CAAATTGAACCCAAAAAAGTTTAAGTACTAAATTAAGAAAAACTGTCAAGTTCAAGTAC
* * * *
71597530 CAAATTGAGCCCAAAAAAGTTTAAGTA-TCAAATTAGGAAAAAGTGTTAAGTTCAAGTAC
1 CAAATTGAACCCAAAAAAGTTTAAGTACT-AAATTAAGAAAAACTGTCAAGTTCAAGTAC
* ** * * * *
71597589 TAAATT-AGACAAAAAAAAATCTAGGTACTAAATTAGGAAAAA
1 CAAATTGA-ACCCAAAAAAGTTTAAGTACTAAATTAAGAAAAA
71597631 AATTTCAAAT
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
58 2 0.02
59 82 0.96
60 1 0.01
ACGTcount: A:0.50, C:0.11, G:0.14, T:0.24
Consensus pattern (59 bp):
CAAATTGAACCCAAAAAAGTTTAAGTACTAAATTAAGAAAAACTGTCAAGTTCAAGTAC
Found at i:71600349 original size:19 final size:19
Alignment explanation
Indices: 71600325--71600362 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
71600315 TCCGTGACAG
71600325 TGTTAAATTTATCAGGTAC
1 TGTTAAATTTATCAGGTAC
*
71600344 TGTTAAATTTATTAGGTAC
1 TGTTAAATTTATCAGGTAC
71600363 CATGTATTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.45
Consensus pattern (19 bp):
TGTTAAATTTATCAGGTAC
Found at i:71600726 original size:40 final size:40
Alignment explanation
Indices: 71600682--71600762 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
71600672 AGAAAAATGA
71600682 ATGTTTATTCTATATTATGTATGATTTATAAGTTAAATTG
1 ATGTTTATTCTATATTATGTATGATTTATAAGTTAAATTG
*
71600722 ATGTTTATTCTATATTGTGTATGATTTATAAGTTAAATTG
1 ATGTTTATTCTATATTATGTATGATTTATAAGTTAAATTG
71600762 A
1 A
71600763 CAGGTATGTG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.32, C:0.02, G:0.14, T:0.52
Consensus pattern (40 bp):
ATGTTTATTCTATATTATGTATGATTTATAAGTTAAATTG
Found at i:71620107 original size:27 final size:27
Alignment explanation
Indices: 71620075--71620252 Score: 223
Period size: 27 Copynumber: 6.6 Consensus size: 27
71620065 TTAGTTTACC
71620075 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
71620102 AATTACTAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* **
71620129 AATTACGAAAATACCTTTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
71620156 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
71620183 AATTATCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
71620210 AATTACCATAATACCCCT-GATTTGTGA
1 AATTACCAAAATACCCCTAG-TTTGTAA
**
71620237 AATTACTGAAATACCC
1 AATTACCAAAATACCC
71620253 TCGACCTGTA
Statistics
Matches: 130, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 1 0.01
27 129 0.99
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:71620263 original size:54 final size:54
Alignment explanation
Indices: 71620075--71620306 Score: 166
Period size: 54 Copynumber: 4.3 Consensus size: 54
71620065 TTAGTTTACC
* * ** * * * *
71620075 AATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAA
1 AATTATCAAAATACCCCGAGCCTGTAAAATTACCAAAATACCCCTGATTTGTAA
*** ** *
71620129 AATTA-CGAAAATACCTTTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTATC-AAAATACCCCGAGCCTGTAAAATTACCAAAATACCCCTGATTTGTAA
* ** * *
71620183 AATTATCAAAATACCCCTAGTTTGTAAAATTACCATAATACCCCTGATTTGTGA
1 AATTATCAAAATACCCCGAGCCTGTAAAATTACCAAAATACCCCTGATTTGTAA
* *** *
71620237 AATTA-CTGAAATACCCTCGA-CCTGTAAAATTATTGAAATA-CCCTCGACTTGTAA
1 AATTATC-AAAATACCC-CGAGCCTGTAAAATTACCAAAATACCCCT-GATTTGTAA
* *
71620291 AATTACCAAAGTACCC
1 AATTATCAAAATACCC
71620307 TCGATTTATA
Statistics
Matches: 150, Mismatches: 22, Indels: 12
0.82 0.12 0.07
Matches are distributed among these distances:
53 6 0.04
54 140 0.93
55 4 0.03
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
AATTATCAAAATACCCCGAGCCTGTAAAATTACCAAAATACCCCTGATTTGTAA
Found at i:71620266 original size:27 final size:27
Alignment explanation
Indices: 71620236--71620310 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
71620226 CTGATTTGTG
71620236 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
71620263 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
71620290 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
71620311 TTTATAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:71620321 original size:27 final size:27
Alignment explanation
Indices: 71620302--71620836 Score: 777
Period size: 27 Copynumber: 19.8 Consensus size: 27
71620292 ATTACCAAAG
* *
71620302 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
71620329 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* **
71620356 TACCCTC-AGTTTAAAGAATTACCATTT
1 TACCCTCGA-TTTACAGAATTACTGTTT
* *
71620383 TACCC-CTGATTTATAGAATTACTATTT
1 TACCCTC-GATTTACAGAATTACTGTTT
71620410 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
71620437 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
71620464 TACCCTCCATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
71620491 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
71620518 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
71620545 TACCCTCCATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
71620572 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
71620599 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
71620626 TACCCTCCATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
71620653 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
71620680 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
71620707 TACCCTCCATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
71620734 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
71620761 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
71620788 TACCCTCCATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
71620815 TACCCTCGATTTATAAAATTAC
1 TACCCTCGATTTACAGAATTAC
71620837 CGAAATACCC
Statistics
Matches: 456, Mismatches: 48, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
26 2 0.00
27 452 0.99
28 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:71620847 original size:81 final size:81
Alignment explanation
Indices: 71620302--71620836 Score: 950
Period size: 81 Copynumber: 6.6 Consensus size: 81
71620292 ATTACCAAAG
* **
71620302 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTC-AGT
1 TACCCTCCATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGA-T
**
71620366 TTA-AAGAATTACCATTT
65 TTACAA-AATTACTGTTT
*
71620383 TACCC-CTGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGAT
1 TACCCTC-CATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGAT
71620447 TTACAAAATTACTGTTT
65 TTACAAAATTACTGTTT
71620464 TACCCTCCATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCCATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
71620529 TACAAAATTACTGTTT
66 TACAAAATTACTGTTT
71620545 TACCCTCCATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCCATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
71620610 TACAAAATTACTGTTT
66 TACAAAATTACTGTTT
71620626 TACCCTCCATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCCATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
71620691 TACAAAATTACTGTTT
66 TACAAAATTACTGTTT
71620707 TACCCTCCATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCCATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
71620772 TACAAAATTACTGTTT
66 TACAAAATTACTGTTT
* *
71620788 TACCCTCCATTTATAGAATTACTATTTTACCCTCGATTTATAAAATTAC
1 TACCCTCCATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTAC
71620837 CGAAATACCC
Statistics
Matches: 443, Mismatches: 7, Indels: 8
0.97 0.02 0.02
Matches are distributed among these distances:
80 1 0.00
81 438 0.99
82 4 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCCATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
TACAAAATTACTGTTT
Found at i:71620866 original size:27 final size:27
Alignment explanation
Indices: 71620836--71621114 Score: 303
Period size: 27 Copynumber: 10.0 Consensus size: 27
71620826 TATAAAATTA
71620836 CCGAAATACCCTTGTAGGGTAGAAATG
1 CCGAAATACCCTTGTAGGGTAGAAATG
71620863 CCGAAATACCCTTGTAGGGTAGAAATATCG
1 CCGAAATACCCTTGTAGGGTAG-AA-AT-G
* *
71620893 AAATACCGAAATACCCCTGTAGGGTAGAAATA
1 -----CCGAAATACCCTTGTAGGGTAGAAATG
*
71620925 CTGAAATA-CCTCTGTAGGAGGTAGAAATG
1 CCGAAATACCCT-TGTA-G-GGTAGAAATG
71620954 CCGAAATACCCTTGTAGGGTAGAAATG
1 CCGAAATACCCTTGTAGGGTAGAAATG
71620981 CCGAAATACCCTTGTAGGGTAGAAATG
1 CCGAAATACCCTTGTAGGGTAGAAATG
*
71621008 CCGAAATACCCTTGTAGGGTAGAAATA
1 CCGAAATACCCTTGTAGGGTAGAAATG
* * *
71621035 CCTAAATACCCTTGTAGGGTAGAATTA
1 CCGAAATACCCTTGTAGGGTAGAAATG
* * * * *
71621062 CTGAAATACTCC-TATAAGGTAGAATTA
1 CCGAAATAC-CCTTGTAGGGTAGAAATG
* *
71621089 CCGAGATACCCTTGTGGGGTA-AAATG
1 CCGAAATACCCTTGTAGGGTAGAAATG
71621115 GTAGGTGTTA
Statistics
Matches: 218, Mismatches: 20, Indels: 29
0.82 0.07 0.11
Matches are distributed among these distances:
26 7 0.03
27 154 0.71
28 6 0.03
29 22 0.10
30 4 0.02
33 2 0.01
34 2 0.01
35 21 0.10
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (27 bp):
CCGAAATACCCTTGTAGGGTAGAAATG
Found at i:71620903 original size:35 final size:35
Alignment explanation
Indices: 71620857--71620934 Score: 122
Period size: 35 Copynumber: 2.2 Consensus size: 35
71620847 TTGTAGGGTA
* *
71620857 GAAATGCCGAAATACCCTTGTAGGGTAGAAATA-T
1 GAAATACCGAAATACCCCTGTAGGGTAGAAATACT
71620891 CGAAATACCGAAATACCCCTGTAGGGTAGAAATACT
1 -GAAATACCGAAATACCCCTGTAGGGTAGAAATACT
71620927 GAAATACC
1 GAAATACC
71620935 TCTGTAGGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
35 39 0.98
36 1 0.03
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (35 bp):
GAAATACCGAAATACCCCTGTAGGGTAGAAATACT
Found at i:71621480 original size:27 final size:26
Alignment explanation
Indices: 71621442--71621501 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
71621432 ACATATATCT
* *
71621442 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* *
71621468 ATATCTGTATCTGGTGACTTCGCCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
*
71621495 TTATCTG
1 ATATCTG
71621502 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:71621702 original size:86 final size:86
Alignment explanation
Indices: 71621557--71621728 Score: 344
Period size: 86 Copynumber: 2.0 Consensus size: 86
71621547 GAGTTGTCTC
71621557 CCCACATGGTGTAAGGTTGGTACGGGGGTGTATACGGATGGATTGGGTTGGGTTTGCATTCACAT
1 CCCACATGGTGTAAGGTTGGTACGGGGGTGTATACGGATGGATTGGGTTGGGTTTGCATTCACAT
71621622 TCTGATTCTGATTCTGTTACT
66 TCTGATTCTGATTCTGTTACT
71621643 CCCACATGGTGTAAGGTTGGTACGGGGGTGTATACGGATGGATTGGGTTGGGTTTGCATTCACAT
1 CCCACATGGTGTAAGGTTGGTACGGGGGTGTATACGGATGGATTGGGTTGGGTTTGCATTCACAT
71621708 TCTGATTCTGATTCTGTTACT
66 TCTGATTCTGATTCTGTTACT
71621729 TGATACTGAT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 86 1.00
ACGTcount: A:0.17, C:0.15, G:0.31, T:0.36
Consensus pattern (86 bp):
CCCACATGGTGTAAGGTTGGTACGGGGGTGTATACGGATGGATTGGGTTGGGTTTGCATTCACAT
TCTGATTCTGATTCTGTTACT
Found at i:71621715 original size:6 final size:6
Alignment explanation
Indices: 71621706--71621830 Score: 96
Period size: 6 Copynumber: 20.3 Consensus size: 6
71621696 TTGCATTCAC
* *
71621706 ATTCTG ATTCTG ATTCTG -TTACTTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATT--CTG
* * *
71621756 ATTCTG ATTCTG ATTTTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
71621805 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
71621831 AATGTTTCTT
Statistics
Matches: 96, Mismatches: 12, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
5 6 0.06
6 77 0.80
7 9 0.09
8 4 0.04
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:71621737 original size:25 final size:25
Alignment explanation
Indices: 71621709--71621770 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
71621699 CATTCACATT
* *
71621709 CTGATTCTGATTCTGTTACTTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
71621734 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
71621759 CTGATTCTGATT
1 CTGATTCTGATT
71621771 TTGATTTTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:71621741 original size:31 final size:30
Alignment explanation
Indices: 71621706--71621809 Score: 104
Period size: 31 Copynumber: 3.4 Consensus size: 30
71621696 TTGCATTCAC
*
71621706 ATTCTGATTCTGATTCTGTTACTTGATACTG
1 ATTCTGATTCTGATTCTGTTAC-TGATTCTG
*
71621737 ATTCTGATTCTG-TTACCTAATT-CTGATTCTG
1 ATTCTGATTCTGATT--CT-GTTACTGATTCTG
* * *
71621768 ATTTTGATTTTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTGATTCTG
71621799 ATTCTGATTCT
1 ATTCTGATTCT
71621810 CATTTTGATT
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
29 1 0.02
30 4 0.07
31 47 0.80
32 5 0.08
33 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTGATTCTG
Found at i:71621759 original size:19 final size:19
Alignment explanation
Indices: 71621734--71621804 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
71621724 TTACTTGATA
71621734 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
71621753 CTAATTCTGATTCTGATT--
1 CTGATTCTGATTCTG-TTAC
* * *
71621771 TTGATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGTTAC
71621790 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
71621805 ATTCTCATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 1 0.02
18 12 0.29
19 27 0.64
20 2 0.05
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.49
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:71621776 original size:37 final size:37
Alignment explanation
Indices: 71621729--71621821 Score: 132
Period size: 37 Copynumber: 2.5 Consensus size: 37
71621719 TTCTGTTACT
* * *
71621729 TGATACTGATTCTGATTCTGTTACCTAATTCTGATTC
1 TGATTCTGATTTTGATTCTGTCACCTAATTCTGATTC
* *
71621766 TGATTTTGATTTTGATTCTGTCACCTGATTCTGATTC
1 TGATTCTGATTTTGATTCTGTCACCTAATTCTGATTC
*
71621803 TGATTCTCATTTTGATTCT
1 TGATTCTGATTTTGATTCT
71621822 AGTTCTGATA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (37 bp):
TGATTCTGATTTTGATTCTGTCACCTAATTCTGATTC
Found at i:71623840 original size:54 final size:54
Alignment explanation
Indices: 71623775--71623970 Score: 196
Period size: 54 Copynumber: 3.6 Consensus size: 54
71623765 TTAGTTTACC
* * * * *
71623775 AAATGACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGATTTGTA
* * * *
71623829 AAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTCGA-TTTGTAAAATTACTAAAATACCCTTGATTTGTA
** * ** * * * *
71623883 AAATTACTGAACTACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGATTTGTA
* *
71623937 AAATTACCAAAGTACCCTCGATTTATAAAATTAC
1 AAATTACCAAAATACCCTCGATTTGTAAAATTAC
71623971 CGTTTTACCC
Statistics
Matches: 111, Mismatches: 29, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
54 109 0.98
55 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTTGATTTGTA
Found at i:71623898 original size:27 final size:27
Alignment explanation
Indices: 71623775--71623971 Score: 159
Period size: 27 Copynumber: 7.3 Consensus size: 27
71623765 TTAGTTTACC
* * *
71623775 AAATGACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * * *
71623802 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
71623829 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
71623856 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** * **
71623883 AAATTACTGAACTA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** *
71623910 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *
71623937 AAATTACCAAAGTA-CCCTCGATTTATA
1 AAATTACCAAAATACCCCT-GATTTGTA
71623964 AAATTACC
1 AAATTACC
71623972 GTTTTACCCT
Statistics
Matches: 144, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
26 4 0.03
27 139 0.97
28 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:71623912 original size:81 final size:81
Alignment explanation
Indices: 71623775--71623970 Score: 198
Period size: 81 Copynumber: 2.4 Consensus size: 81
71623765 TTAGTTTACC
* * * * ***
71623775 AAATGACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGACCTATAAAATTACCAAA
*
71623840 ATACCCCTAG-TTTGTA
66 ATA-CCCTAGACTTGTA
* * * * ***
71623856 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAACTACCCTCGACCTGTAAAATTATTGAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGACCTATAAAATTACCAAA
*
71623921 ATACCCTCGACTTGTA
66 ATACCCTAGACTTGTA
* *
71623937 AAATTACCAAAGTA-CCCTCGATTTATAAAATTAC
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTAC
71623971 CGTTTTACCC
Statistics
Matches: 94, Mismatches: 19, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
80 9 0.10
81 85 0.90
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTCGACCTATAAAATTACCAAA
ATACCCTAGACTTGTA
Found at i:71623979 original size:27 final size:27
Alignment explanation
Indices: 71623949--71624104 Score: 204
Period size: 27 Copynumber: 5.8 Consensus size: 27
71623939 ATTACCAAAG
* *
71623949 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
71623976 TACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
71624003 TACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
**
71624030 TACCCTTAATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
71624057 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
71624084 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAAAATTA
71624105 TCGAAATACC
Statistics
Matches: 116, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:71623996 original size:54 final size:54
Alignment explanation
Indices: 71623949--71624104 Score: 231
Period size: 54 Copynumber: 2.9 Consensus size: 54
71623939 ATTACCAAAG
* * *
71623949 TACCCTCGATTTATAAAATTACCGTTTTACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACTGTTT
* * *
71624003 TACCCTCAATTTACAGAATTACTGTTTTACCCTTAATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACTGTTT
* * *
71624057 TACCCTTGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTA
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTA
71624105 TCGAAATACC
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACTGTTT
Found at i:71624115 original size:81 final size:80
Alignment explanation
Indices: 71623922--71624117 Score: 212
Period size: 81 Copynumber: 2.4 Consensus size: 80
71623912 ATTATTGAAA
* ** * ** *
71623922 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACCGTTTTACCCTCAATT
1 TACCCTCGATTTACAAAATTACGAAA-TACCCTTAATTTACAAAATTACCGTTTTACCCTCAATT
*
71623987 TACAGAATTACTGTTT
65 TACAGAATTACTATTT
* * *** * **
71624003 TACCCTCAATTTACAGAATTACTGTTTTACCCTTAATTTACAAAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTAC-GAAATACCCTTAATTTACAAAATTACCGTTTTACCCTCAATT
*
71624068 TATAGAATTACTATTT
65 TACAGAATTACTATTT
71624084 TACCCTCGATTTACAAAATTATCGAAATACCCTT
1 TACCCTCGATTTACAAAATTA-CGAAATACCCTT
71624118 GTAGGGTAGA
Statistics
Matches: 91, Mismatches: 22, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
81 90 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACGAAATACCCTTAATTTACAAAATTACCGTTTTACCCTCAATTT
ACAGAATTACTATTT
Found at i:71624118 original size:54 final size:54
Alignment explanation
Indices: 71623936--71624116 Score: 186
Period size: 54 Copynumber: 3.4 Consensus size: 54
71623926 CTCGACTTGT
* * *
71623936 AAAATTAC-CAAAGTACCCTCGATTTATAAAATTACCGTTTTACCCTCAATTTAC
1 AAAATTACTGAAA-TACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTAC
* *** * * *
71623990 AGAATTACTGTTTTACCCTCAATTTACAGAATTACTGTTTTACCCTTAATTTAC
1 AAAATTACTGAAATACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTAC
*** * * *
71624044 AAAATTACTGTTTTACCCTTGATTTATAGAATTACTATTTTACCCTCGATTTAC
1 AAAATTACTGAAATACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTAC
71624098 AAAATTA-TCGAAATACCCT
1 AAAATTACT-GAAATACCCT
71624117 TGTAGGGTAG
Statistics
Matches: 105, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
53 1 0.01
54 104 0.99
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.39
Consensus pattern (54 bp):
AAAATTACTGAAATACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTAC
Found at i:71624136 original size:27 final size:27
Alignment explanation
Indices: 71624106--71624309 Score: 264
Period size: 27 Copynumber: 7.6 Consensus size: 27
71624096 ACAAAATTAT
* *
71624106 CGAAATACCCTTGTAGGGTAGAAATGC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
71624133 CGAAATAACCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
71624160 CGGAATACCCCTGTAGGGTAAAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
*
71624187 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
** *
71624214 TAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
*
71624241 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* * *
71624268 CTAAATGCCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
71624295 TGAAATACTCCTGTA
1 CGAAATACCCCTGTA
71624310 AGATAAAATT
Statistics
Matches: 154, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 154 1.00
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAAATAC
Found at i:71624291 original size:81 final size:80
Alignment explanation
Indices: 71624106--71624345 Score: 291
Period size: 81 Copynumber: 3.0 Consensus size: 80
71624096 ACAAAATTAT
* * * * * * * * *
71624106 CGAAATACCCTTGTAGGGTAGAAATGCCGAAATAACCTTGTAGGGTAGAAATACCGGAATACCCC
1 CGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCT
71624171 TGTAGGGTAAAAATAC
66 TGTAGGGT-AAAATAC
*
71624187 CGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCT
1 CGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCT
71624252 TGTAGGGTAGAAATAC
66 TGTAGGGTA-AAATAC
* * * * * * * *
71624268 CTAAATGCCCCTGTAGGGTAGAATTACTGAAATACTCCTGTAAGATAAAATTATCGAGATACCCT
1 CGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCT
*
71624333 TGTGGGGTAAAAT
66 TGTAGGGTAAAAT
71624346 GGTATGTGTT
Statistics
Matches: 138, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
80 5 0.04
81 133 0.96
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (80 bp):
CGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCT
TGTAGGGTAAAATAC
Found at i:71624319 original size:27 final size:27
Alignment explanation
Indices: 71624098--71624345 Score: 202
Period size: 27 Copynumber: 9.2 Consensus size: 27
71624088 CTCGATTTAC
*
71624098 AAAATTA-TCGAAATACCCTTGTAGGGT
1 AAAATTACT-GAAATACCCCTGTAGGGT
* * * *
71624125 AGAAA-TGCCGAAATAACCTTGTAGGGT
1 A-AAATTACTGAAATACCCCTGTAGGGT
* *
71624152 AGAAA-TACCGGAATACCCCTGTAGGGT
1 A-AAATTACTGAAATACCCCTGTAGGGT
* *
71624179 AAAAATACCGAAATACCCCTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGT
* *
71624206 AGAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGT
* * *
71624233 AGAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGT
*
71624260 AGAAA-TACCT-AAATGCCCCTGTAGGGT
1 A-AAATTA-CTGAAATACCCCTGTAGGGT
* * * *
71624287 AGAATTACTGAAATACTCCTGTAAGAT
1 AAAATTACTGAAATACCCCTGTAGGGT
* * *
71624314 AAAATTA-TCGAGATACCCTTGTGGGGT
1 AAAATTACT-GAAATACCCCTGTAGGGT
71624341 AAAAT
1 AAAAT
71624346 GGTATGTGTT
Statistics
Matches: 182, Mismatches: 31, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
26 8 0.04
27 168 0.92
28 6 0.03
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
AAAATTACTGAAATACCCCTGTAGGGT
Found at i:71624626 original size:27 final size:26
Alignment explanation
Indices: 71624582--71624633 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
71624572 CTCGCTGCAA
*
71624582 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
71624609 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
71624634 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:71624712 original size:27 final size:26
Alignment explanation
Indices: 71624674--71624733 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
71624664 ACATATATCT
* *
71624674 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
71624700 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
71624727 ATATCTG
1 ATATCTG
71624734 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:71624861 original size:6 final size:6
Alignment explanation
Indices: 71624852--71624982 Score: 63
Period size: 6 Copynumber: 21.3 Consensus size: 6
71624842 TTGCATTCAC
* * * *
71624852 ATTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * * * *
71624902 ATTCTG ATTTTG ATTTTG ATTTTG ATTTTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
71624951 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
71624983 AATGTTTCTT
Statistics
Matches: 96, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
5 6 0.06
6 80 0.83
7 6 0.06
8 4 0.04
ACGTcount: A:0.20, C:0.15, G:0.13, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:71624905 original size:19 final size:19
Alignment explanation
Indices: 71624883--71624947 Score: 71
Period size: 19 Copynumber: 3.5 Consensus size: 19
71624873 CCTGATACTG
71624883 ATTCTGATTTTGTTACCTA
1 ATTCTGATTTTGTTACCTA
* *
71624902 ATTCTGATTTTGATT--TTG
1 ATTCTGATTTTG-TTACCTA
* *
71624920 ATTTTGATTTTGTCACCTA
1 ATTCTGATTTTGTTACCTA
71624939 ATTCTGATT
1 ATTCTGATT
71624948 CTGATTCTGA
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
17 1 0.03
18 12 0.33
19 21 0.58
20 2 0.06
ACGTcount: A:0.20, C:0.12, G:0.12, T:0.55
Consensus pattern (19 bp):
ATTCTGATTTTGTTACCTA
Found at i:71624915 original size:25 final size:25
Alignment explanation
Indices: 71624852--71624919 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
71624842 TTGCATTCAC
* * *
71624852 ATTCTGATTCTAATTCTGTTACCTG
1 ATTCTGATTCTGATTTTGTTACCTA
*
71624877 ATACTGATTCTGATTTTGTTACCTA
1 ATTCTGATTCTGATTTTGTTACCTA
*
71624902 ATTCTGATTTTGATTTTG
1 ATTCTGATTCTGATTTTG
71624920 ATTTTGATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.51
Consensus pattern (25 bp):
ATTCTGATTCTGATTTTGTTACCTA
Found at i:71624928 original size:37 final size:37
Alignment explanation
Indices: 71624861--71624968 Score: 137
Period size: 37 Copynumber: 2.9 Consensus size: 37
71624851 CATTCTGATT
* *
71624861 CTAATTCTG-TTACCTGATACTGATTCTGATTTTGTTAC
1 CTAATTCTGATT--CTGATTCTGATTCTGATTTTGTCAC
* * *
71624899 CTAATTCTGATTTTGATTTTGATTTTGATTTTGTCAC
1 CTAATTCTGATTCTGATTCTGATTCTGATTTTGTCAC
*
71624936 CTAATTCTGATTCTGATTCTGATTCTCATTTTG
1 CTAATTCTGATTCTGATTCTGATTCTGATTTTG
71624969 ATTCTAGTTC
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
37 49 0.82
38 9 0.15
39 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (37 bp):
CTAATTCTGATTCTGATTCTGATTCTGATTTTGTCAC
Found at i:71628555 original size:35 final size:35
Alignment explanation
Indices: 71628509--71628576 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
71628499 GTTCTAGGTG
71628509 TTCCTGCCAATTCCAACTATAAACAAGAATGTCCA
1 TTCCTGCCAATTCCAACTATAAACAAGAATGTCCA
* *
71628544 TTCCTGCCAATTCTAACTGTAAACAAGAATGTC
1 TTCCTGCCAATTCCAACTATAAACAAGAATGTC
71628577 ATCTAGAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.28
Consensus pattern (35 bp):
TTCCTGCCAATTCCAACTATAAACAAGAATGTCCA
Found at i:71631449 original size:50 final size:48
Alignment explanation
Indices: 71631336--71631517 Score: 173
Period size: 50 Copynumber: 3.8 Consensus size: 48
71631326 TCACTTGTCT
71631336 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGT--
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGA-ATGTGA
* * *
71631382 G-TC-AGTGTAAGATCATGTCTAGGACATGGCATCGGCACGATTATGTGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGA--ATGTGA
* *
71631430 GAGCTAGTGTAAGACCATGTCGGGGACATGGCATCGGCCTCGAA-GATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGAATG-TGA
* * * *
71631479 TAGCCAGTGTAAGGCCATGTCT-GGACATGGCATCAGCAC
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
71631518 CTTACCCATG
Statistics
Matches: 113, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
44 9 0.08
45 18 0.16
46 13 0.12
47 2 0.02
48 15 0.13
49 23 0.20
50 29 0.26
51 4 0.04
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAATGTGA
Found at i:71633893 original size:10 final size:11
Alignment explanation
Indices: 71633873--71633911 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
71633863 ATTTTTAGCT
71633873 TTTA-TCTTTA
1 TTTATTCTTTA
71633883 TTTATTC-TTA
1 TTTATTCTTTA
71633893 TTTA-TCTTTA
1 TTTATTCTTTA
71633903 TTTA-TCTTT
1 TTTATTCTTT
71633912 TAGAATTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.07
10 23 0.85
11 2 0.07
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTATTCTTTA
Found at i:71648334 original size:55 final size:54
Alignment explanation
Indices: 71648239--71648388 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
71648229 CTACTTTGTT
* ** * *
71648239 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
71648293 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
71648348 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
71648389 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:71648351 original size:27 final size:27
Alignment explanation
Indices: 71648211--71648388 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
71648201 TAAATTGTAC
71648211 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
71648238 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
71648264 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
71648292 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
71648320 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
71648347 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
71648374 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71648389 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:71648352 original size:82 final size:81
Alignment explanation
Indices: 71648212--71648367 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
71648202 AAATTGTACA
* * * *
71648212 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
71648277 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
71648293 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
71648356 TGTGCGAGTTGA
63 TGTGCGAATTGA
71648368 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:71651229 original size:44 final size:44
Alignment explanation
Indices: 71651180--71651399 Score: 170
Period size: 44 Copynumber: 4.8 Consensus size: 44
71651170 CACAAATCTC
* *
71651180 ATCTCCCTAAAGTAGCAGTGGAGCAGATTGAAGCCACCAGCCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTT
* * * ** * **
71651224 ATCTCCCTAAAGTTTCAGTGGAGCAGACTGAAGATAGCGAATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CCAGCCTT
* * * **
71651269 ATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCATATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC--C--ACCA--GC----CTT
* * *
71651323 ATCTTCCTGAAGTTGCAGTGGAGCAAATTGAACCCACCAGCCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTT
*
71651367 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
71651400 ATAGTGAATC
Statistics
Matches: 133, Mismatches: 32, Indels: 22
0.71 0.17 0.12
Matches are distributed among these distances:
44 63 0.47
45 32 0.24
48 3 0.02
49 1 0.01
50 2 0.02
52 1 0.01
54 31 0.23
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTT
Found at i:71651288 original size:45 final size:45
Alignment explanation
Indices: 71651221--71651761 Score: 214
Period size: 45 Copynumber: 11.4 Consensus size: 45
71651211 AGCCACCAGC
* * *
71651221 CTTATCTCCCTAAAGTTTCAGTGGAGCAGACTGAAGATAGCGAAT
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAAT
* * *
71651266 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATTATG-GCATAT
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGACT---G--A-AGA-TA-GCG-A-AT
* * *** * **
71651320 CTTATCTT-CCTGAAGTTGCAGTGGAGCAAATTGAACCCA-CCAGC
1 CTTAT-TTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAAT
* *
71651364 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGTGAAT
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAAT
* ** * * * *
71651409 CTTGTTTCCCTGGCGTTGTAGTGGAACAGACTAAAGCTACAAATTATGGTGAAT
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGACT---G--A-AGA-TA--GCGAAT
* * * * **
71651463 CTTATCTT-CCTGAAGTTGTAGTGGAGCAGATTGAAGTTA-CCAGC
1 CTTAT-TTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAAT
* * * **
71651507 CTTATCTCCTTGAAGTTGCAGCGGAGCAGACTGAAGATAGAAAAT
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAAT
* * * **
71651552 CTCATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAGCTATGGGT
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGACTGAAG--A-TAGC---GAAT
* * * *
71651603 CTTATCTCCTTGAAGTTGCAGTAGGAGCAGACTGAAAATAG-TAGAT
1 CTTATTTCCCTGAAGTTGCAGT-GGAGCAGACTGAAGATAGCGA-AT
* * * * **
71651649 CTTATTTCCCTGAAGTTGTAGTGGAGTAGATTGAAGCTA-AAAATTT
1 CTTATTTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAA--T
* * * *
71651695 CTAATGTTATCTTCCTGAAGTTGTAGTAGGAGTAGACTAAAGATAGCGAAT
1 CT--TATT-TC--CCTGAAGTTGCAGT-GGAGCAGACTGAAGATAGCGAAT
*
71651746 CTTATTTCCCTAAAGT
1 CTTATTTCCCTGAAGT
71651762 CGTAGTAGAG
Statistics
Matches: 365, Mismatches: 87, Indels: 87
0.68 0.16 0.16
Matches are distributed among these distances:
43 2 0.01
44 64 0.18
45 101 0.28
46 30 0.08
47 4 0.01
48 11 0.03
49 9 0.02
50 3 0.01
51 43 0.12
52 31 0.08
53 4 0.01
54 59 0.16
55 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (45 bp):
CTTATTTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAAT
Found at i:71651452 original size:143 final size:141
Alignment explanation
Indices: 71651174--71651638 Score: 610
Period size: 143 Copynumber: 3.3 Consensus size: 141
71651164 TGAATCCACA
* * * * * *
71651174 AATCTCATCTCCCTAAAGTAGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTT
1 AATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
*
71651239 CAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCT
66 CAGTGGAGCAGACTGAAGATAGAGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCT
71651304 ACAAATTATGG
131 ACAAATTATGG
* *
71651315 CATATCTTATCTTCCTGAAGTTGCAGTGGAGCAAATTGAACCCACCAGCCTTATCTCCCTGAAGT
1 -A-ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGT
* * ** * *
71651380 TGCAGTGGAGCAGACTGAAGATAGTGAATCTTGTTTCCCTGGCGTTGTAGTGGAACAGACTAAAG
64 TGCAGTGGAGCAGACTGAAGATAGAGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAG
71651445 CTACAAATTATGGTG
129 CTACAAATTAT-G-G
* ** *
71651460 AATCTTATCTTCCTGAAGTTGTAGTGGAGCAGATTGAAGTTACCAGCCTTATCTCCTTGAAGTTG
1 AATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
* * * * *
71651525 CAGCGGAGCAGACTGAAGATAGAAAATCTCATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
66 CAGTGGAGCAGACTGAAGATAGAGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCT
**
71651590 ACAAGCTATGG
131 ACAAATTATGG
* *
71651601 -GTCTTATC-TCCTTGAAGTTGCAGTAGGAGCAGACTGAA
1 AATCTTATCTTCC-TGAAGTTGCAGT-GGAGCAGATTGAA
71651639 AATAGTAGAT
Statistics
Matches: 282, Mismatches: 36, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
139 3 0.01
140 18 0.06
141 13 0.05
142 2 0.01
143 243 0.86
144 2 0.01
145 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (141 bp):
AATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
CAGTGGAGCAGACTGAAGATAGAGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCT
ACAAATTATGG
Found at i:71651672 original size:97 final size:96
Alignment explanation
Indices: 71651461--71651804 Score: 316
Period size: 97 Copynumber: 3.6 Consensus size: 96
71651451 ATTATGGTGA
* *
71651461 ATCTTATCTT-CCTGAAGTTGTAGTGGAGCAGATTGAAGTTAC---C-A---GCCTTATCTCCTT
1 ATCTTAT-TTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACAAGCTATGGGTCTTATCTCCTT
* * *
71651518 GAAGTTGCAG-CGGAGCAGACTGAAGATAGAAA
65 GAAGTTGCAGTAGGAGCAGACTGAAAATAG-AG
* *
71651550 ATCTCATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAGCTATGGGTCTTATCTCCTTG
1 ATCTTATTTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACAAGCTATGGGTCTTATCTCCTTG
71651615 AAGTTGCAGTAGGAGCAGACTGAAAATAGTAG
66 AAGTTGCAGTAGGAGCAGACTGAAAATAG-AG
* ** * *** *
71651647 ATCTTATTTCCCTGAAGTTGTAGTGGAGTAGATTGAAGCTA-AAAATTTCTAATGTTATCTTCC-
1 ATCTTATTTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACAAGCTAT-GGGTCTTATC-TCCT
* * *
71651710 TGAAGTTGTAGTAGGAGTAGACT-AAAGATAGCG
64 TGAAGTTGCAGTAGGAGCAGACTGAAA-ATAGAG
* * * * * * *
71651743 AATCTTATTTCCCTAAAGTCGTAGTAGAGAAGATTGAAGCTAAAAGTTACGGGTCTTATCTC
1 -ATCTTATTTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACAAGCTATGGGTCTTATCTC
71651805 TCTAAAGTAG
Statistics
Matches: 208, Mismatches: 33, Indels: 21
0.79 0.13 0.08
Matches are distributed among these distances:
88 2 0.01
89 36 0.17
92 1 0.00
93 1 0.00
96 32 0.15
97 130 0.62
98 6 0.03
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (96 bp):
ATCTTATTTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTACAAGCTATGGGTCTTATCTCCTTG
AAGTTGCAGTAGGAGCAGACTGAAAATAGAG
Found at i:71652498 original size:13 final size:14
Alignment explanation
Indices: 71652469--71652498 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
71652459 AAAGGTTCAT
71652469 TTTATTTTTTTCTC
1 TTTATTTTTTTCTC
71652483 TTTATTTTTTTC-C
1 TTTATTTTTTTCTC
71652496 TTT
1 TTT
71652499 CGAAACTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTATTTTTTTCTC
Found at i:71653177 original size:3 final size:3
Alignment explanation
Indices: 71653169--71653218 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
71653159 TAATTTTAAA
* * * *
71653169 ATT ATT ATT ATT ATT TTT ATT ACT ACT ATT ATT ATT ATT ATT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
71653217 AT
1 AT
71653219 ATCATTCCCT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:71653198 original size:21 final size:21
Alignment explanation
Indices: 71653174--71653214 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
71653164 TTAAAATTAT
*
71653174 TATTATTATTTTTATTACTAC
1 TATTATTATTATTATTACTAC
71653195 TATTATTATTATTATTACTA
1 TATTATTATTATTATTACTA
71653215 TTATATCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (21 bp):
TATTATTATTATTATTACTAC
Found at i:71666777 original size:20 final size:20
Alignment explanation
Indices: 71666751--71666800 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
71666741 TGAACCACTC
71666751 CATTTACTTACTTAT-CA-TT
1 CATTTACTTACTT-TCCATTT
71666770 CTATTTACTTACTTTCCATTT
1 C-ATTTACTTACTTTCCATTT
71666791 CATTTACTTA
1 CATTTACTTA
71666801 GCATAAGCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 2 0.07
20 23 0.82
21 3 0.11
ACGTcount: A:0.24, C:0.22, G:0.00, T:0.54
Consensus pattern (20 bp):
CATTTACTTACTTTCCATTT
Found at i:71672384 original size:27 final size:27
Alignment explanation
Indices: 71672308--71672523 Score: 274
Period size: 27 Copynumber: 8.1 Consensus size: 27
71672298 GAAATTATTA
**
71672308 AAATA-CCTCGATTTGTAAAATTACTA
1 AAATACCCTCGATTTGTAAAATTACCG
* *
71672334 AAATACCCTC-AATTGTGAAATTACCG
1 AAATACCCTCGATTTGTAAAATTACCG
** *
71672360 AAATACCCTTAATTTGTAAAATTACCA
1 AAATACCCTCGATTTGTAAAATTACCG
* *
71672387 AAATACCCTCAATTTGTAAAATTACTG
1 AAATACCCTCGATTTGTAAAATTACCG
* *
71672414 AAATACGCTCGATTTGTAAAATTACTG
1 AAATACCCTCGATTTGTAAAATTACCG
* *
71672441 AAATACCCCCGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCG
*
71672468 AAACACCCTCGATTTGTAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTACCG
* *
71672495 AAACACCCTCGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCG
71672522 AA
1 AA
71672524 GTGTAAAATT
Statistics
Matches: 167, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 26 0.16
27 141 0.84
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATACCCTCGATTTGTAAAATTACCG
Found at i:71672553 original size:27 final size:27
Alignment explanation
Indices: 71672523--71672588 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
71672513 AAATTATCGA
* * * *
71672523 AGTGTAAAATTACTGAAATACCCTTGT
1 AGTGTAAAATGACCGAAATACCCCTAT
*
71672550 AGTGTAAAATGACCGACATACCCCTAT
1 AGTGTAAAATGACCGAAATACCCCTAT
*
71672577 AGGGTAAAATGA
1 AGTGTAAAATGA
71672589 TTGTTTTGCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (27 bp):
AGTGTAAAATGACCGAAATACCCCTAT
Found at i:71676458 original size:30 final size:30
Alignment explanation
Indices: 71676424--71676484 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
71676414 TTCCTGAGCC
71676424 TAGGGGCAAAAGTT-TAAATATGCAAAAGTT
1 TAGGGGCAAAA-TTATAAATATGCAAAAGTT
*
71676454 TAGGGGCAAAATTATAAATTTGCAAAAGTT
1 TAGGGGCAAAATTATAAATATGCAAAAGTT
71676484 T
1 T
71676485 GAGTTAAGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAATTATAAATATGCAAAAGTT
Found at i:71681678 original size:27 final size:26
Alignment explanation
Indices: 71681638--71681749 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
71681628 AGGAAGCGTC
*
71681638 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
71681665 CTGGTGGCGCTGCCACATATATCTGCT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
71681692 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
71681720 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
71681746 CTGG
1 CTGG
71681750 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.09
27 50 0.68
28 17 0.23
ACGTcount: A:0.16, C:0.25, G:0.24, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:71681742 original size:54 final size:54
Alignment explanation
Indices: 71681638--71681749 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
71681628 AGGAAGCGTC
*
71681638 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCGCTGCCACATATATCTGCT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACGCTGCCACATATATCTGCT
* * * * *
71681692 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACGCTGCCACATATATCTGCT
71681746 CTGG
1 CTGG
71681750 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.16, C:0.25, G:0.24, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACGCTGCCACATATATCTGCT
Found at i:71685450 original size:48 final size:48
Alignment explanation
Indices: 71685385--71685725 Score: 619
Period size: 48 Copynumber: 7.1 Consensus size: 48
71685375 GCTGAAATTG
* *
71685385 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAAT
71685433 ATGTATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAAT
71685481 ATGTATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAAT
71685529 ATGTATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAAT
71685577 ATGTATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAAT
* *
71685625 ATGTATGAGACATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAAT
** *
71685673 ATGTATGAGATATGTATATGTGGTAAAGCCGAGTGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAAT
71685721 ATGTA
1 ATGTA
71685726 GGCGAGGTGC
Statistics
Matches: 286, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 286 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.30
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAAT
Done.