Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 209 of 290
Found at i:72112962 original size:42 final size:42
Alignment explanation
Indices: 72112903--72112994 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
72112893 TAGTCTCCCC
*
72112903 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
72112945 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
72112987 AAATGGGC
1 AAATGGGC
72112995 CTATGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:72122829 original size:14 final size:13
Alignment explanation
Indices: 72122801--72122837 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
72122791 ATCCTGGAAT
72122801 ATTAA-AACAATA
1 ATTAAGAACAATA
72122813 ATTAAGAACACATA
1 ATTAAGAACA-ATA
72122827 ATTAAGAACAA
1 ATTAAGAACAA
72122838 ATCAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.62, C:0.11, G:0.05, T:0.22
Consensus pattern (13 bp):
ATTAAGAACAATA
Found at i:72139528 original size:29 final size:29
Alignment explanation
Indices: 72139486--72139565 Score: 110
Period size: 29 Copynumber: 2.8 Consensus size: 29
72139476 GTGAGCATGA
*
72139486 ATAT-AATGTTATTTGGGCCT-AAAGAGCC
1 ATATAAATGTGATTTGGGCCTAAAAGA-CC
*
72139514 ATATAAATGTGATTTGGACCTAAAAGACC
1 ATATAAATGTGATTTGGGCCTAAAAGACC
*
72139543 ATATAAATGTGATTTAGGCCTAA
1 ATATAAATGTGATTTGGGCCTAA
72139566 TGGGCCATGT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 4 0.09
29 37 0.80
30 5 0.11
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAAAAGACC
Found at i:72145408 original size:17 final size:17
Alignment explanation
Indices: 72145383--72145416 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
72145373 GTTTGATGAG
72145383 ATAGCTCATTGTTATAT
1 ATAGCTCATTGTTATAT
*
72145400 ATAGGTCATTGTTATAT
1 ATAGCTCATTGTTATAT
72145417 GATGACGAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.09, G:0.15, T:0.47
Consensus pattern (17 bp):
ATAGCTCATTGTTATAT
Found at i:72161357 original size:48 final size:48
Alignment explanation
Indices: 72161303--72161597 Score: 299
Period size: 48 Copynumber: 6.1 Consensus size: 48
72161293 CCCAGATATA
* * *
72161303 GTCTTACTCTAGCTTTCGTAACAATGCTGATGCCATGTTCCAAACATG
1 GTCTTACACTAGCTCTCATAACAATGCTGATGCCATGTTCCAAACATG
*
72161351 GTCTTACACTAGCTCTCATAACAATG-TCGATGCCATGTTCTAAACATG
1 GTCTTACACTAGCTCTCATAACAATGCT-GATGCCATGTTCCAAACATG
* * * ** *
72161399 GTTTTACACTGGCTCACATATTGAA-GCTGATGCCATG-TCCTAGACATG
1 GTCTTACACTAGCTCTCATA-ACAATGCTGATGCCATGTTCC-AAACATG
* * *
72161447 GTCTTACACTAGCTCTTATAACAATGCAGATGCCATGTTCCAAACATT
1 GTCTTACACTAGCTCTCATAACAATGCTGATGCCATGTTCCAAACATG
* * * * * * * * *
72161495 GTCTTACACTAGTTCACATAATAAGGCCGATGTCATCTCCCAGACATG
1 GTCTTACACTAGCTCTCATAACAATGCTGATGCCATGTTCCAAACATG
* * * * *
72161543 GTCTTACACTAGCTCTCGTAAAAATGCCGATTCCATGTTCCAAACGTG
1 GTCTTACACTAGCTCTCATAACAATGCTGATGCCATGTTCCAAACATG
72161591 GTCTTAC
1 GTCTTAC
72161598 GCTGGCTCAC
Statistics
Matches: 199, Mismatches: 42, Indels: 12
0.79 0.17 0.05
Matches are distributed among these distances:
47 5 0.03
48 188 0.94
49 6 0.03
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (48 bp):
GTCTTACACTAGCTCTCATAACAATGCTGATGCCATGTTCCAAACATG
Found at i:72161453 original size:96 final size:94
Alignment explanation
Indices: 72161328--72161609 Score: 350
Period size: 96 Copynumber: 2.9 Consensus size: 94
72161318 TCGTAACAAT
* *
72161328 GCTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAACAATGTCGATGCCATGTTCTA
1 GCTGATGCCATG-TCCAGACATGGTCTTACACTAGCTCTCATAACAATG-CGATGCCATGTTCCA
* *
72161393 AACATGGTTTTACACTGGCTCACATATTGAA-
64 AACATGGTCTTACACTGGCTCACATAAT-AAG
*
72161424 GCTGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTTATAACAATGCAGATGCCATGTTCCA
1 GCTGATGCCATGTCC-AGACATGGTCTTACACTAGCTCTCATAACAATGC-GATGCCATGTTCCA
* * *
72161489 AACATTGTCTTACACTAGTTCACATAATAAG
64 AACATGGTCTTACACTGGCTCACATAATAAG
* * * * * *
72161520 GCCGATGTCATCTCCCAGACATGGTCTTACACTAGCTCTCGTAAAAATGCCGATTCCATGTTCCA
1 GCTGATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCATAACAATG-CGATGCCATGTTCCA
* *
72161585 AACGTGGTCTTACGCTGGCTCACAT
64 AACATGGTCTTACACTGGCTCACAT
72161610 GTACCCTAAT
Statistics
Matches: 161, Mismatches: 20, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
95 6 0.04
96 152 0.94
97 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (94 bp):
GCTGATGCCATGTCCAGACATGGTCTTACACTAGCTCTCATAACAATGCGATGCCATGTTCCAAA
CATGGTCTTACACTGGCTCACATAATAAG
Found at i:72161543 original size:144 final size:144
Alignment explanation
Indices: 72161283--72161557 Score: 354
Period size: 144 Copynumber: 1.9 Consensus size: 144
72161273 GTAAGATGTC
* * * *
72161283 GATGCCACGTCCCAGATATAGTCTTACTCTAGCTTTCGTAACAATGCTGATGCCATGTTCCAAAC
1 GATGCCACGTCCCAGACATAGTCTTACACTAGCTTTCATAACAATGCAGATGCCATGTTCCAAAC
* * * * * * * *
72161348 ATGGTCTTACACTAGCTCTCATAACAATGTCGATGCCATGTTCTAAACATGGTTTTACACTGGCT
66 ATGGTCTTACACTAGCTCACATAACAAGGCCGATGCCATCTCCCAAACATGGTCTTACACTAGCT
72161413 CACATATTGAAGCT
131 CACATATTGAAGCT
* * *
72161427 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTT-ATAACAATGCAGATGCCATGTTCCAAA
1 GATGCCACGTCCCAGACATAGTCTTACACTAGCT-TTCATAACAATGCAGATGCCATGTTCCAAA
* * * * *
72161491 CATTGTCTTACACTAGTTCACATAATAAGGCCGATGTCATCTCCCAGACATGGTCTTACACTAGC
65 CATGGTCTTACACTAGCTCACATAACAAGGCCGATGCCATCTCCCAAACATGGTCTTACACTAGC
72161556 TC
130 TC
72161558 TCGTAAAAAT
Statistics
Matches: 110, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
144 108 0.98
145 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (144 bp):
GATGCCACGTCCCAGACATAGTCTTACACTAGCTTTCATAACAATGCAGATGCCATGTTCCAAAC
ATGGTCTTACACTAGCTCACATAACAAGGCCGATGCCATCTCCCAAACATGGTCTTACACTAGCT
CACATATTGAAGCT
Found at i:72169160 original size:48 final size:48
Alignment explanation
Indices: 72169074--72169522 Score: 358
Period size: 48 Copynumber: 9.5 Consensus size: 48
72169064 CATTTCCCAG
* * * * * * *
72169074 ACATGGTCTTACACTTGCTCTCGTAATAATGCTAATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
* * * *
72169122 ACATGGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
* *** ***
72169170 ACATGGTCTTACACTAGCTCTCATAACAATGTTGAA-GCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCACATATTGA-GGCCAATGCCATGTTCCAA
* *
72169218 ACATGGTCTTACACTAGCTCACATATTGAGGCTAATGCTATG-TCCAAA
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCC-AA
* * *
72169266 ACATGGTCTTACACTAGCTCTCATA---A---CAATGCTA-ATTCCAA
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
* * * *
72169307 ACATGGTCTTACATTGGCTCACATATTGAGGCCGATGCCATGTCCCAA
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
* * * *** *
72169355 ACATGGCCTTACGCTAGCTCTCATAACAATGCCAATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
* * * * * *
72169403 ACATGGTTTTACATTGGCTCACATATTGAGGCCGATGTCATGTCCCAA
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
* * *** *** *
72169451 ACGTAGTCTTACACTAGCTCTTGTAACAATGCCAATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
* *
72169499 ACATGGTCTTACACTGGTTCACAT
1 ACATGGTCTTACACTAGCTCACAT
72169523 GTACCCTAAC
Statistics
Matches: 305, Mismatches: 85, Indels: 22
0.74 0.21 0.05
Matches are distributed among these distances:
41 24 0.08
42 10 0.03
44 1 0.00
45 1 0.00
47 12 0.04
48 255 0.84
49 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (48 bp):
ACATGGTCTTACACTAGCTCACATATTGAGGCCAATGCCATGTTCCAA
Found at i:72169220 original size:96 final size:95
Alignment explanation
Indices: 72169056--72169522 Score: 599
Period size: 96 Copynumber: 4.9 Consensus size: 95
72169046 AGGGTAAGAT
* * * * * *
72169056 GCCGATACCATTTCCCAGACATGGTCTTACACTTGCTCTCGTAATAATGCTAATGCCATGTTCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATG-TAATGCCATGTTCCA
72169121 AACATGGTCTTACACTGGCTCACATATTGAG
65 AACATGGTCTTACACTGGCTCACATATTGAG
*
72169152 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGTTGAA-GCCATGTTCC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATG-T-AATGCCATGTTCC
*
72169216 AAACATGGTCTTACACTAGCTCACATATTGAG
64 AAACATGGTCTTACACTGGCTCACATATTGAG
** * *
72169248 GCTAATGCTATGTCCAAAACATGGTCTTACACTAGCTCTCATAACAATGCT-A----A--TTCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATG-TAATGCCATGTTCCA
*
72169306 AACATGGTCTTACATTGGCTCACATATTGAG
65 AACATGGTCTTACACTGGCTCACATATTGAG
* * *
72169337 GCCGATGCCATGTCCCAAACATGGCCTTACGCTAGCTCTCATAACAATGCCAATGCCATGTTCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATG-TAATGCCATGTTCCA
* *
72169402 AACATGGTTTTACATTGGCTCACATATTGAG
65 AACATGGTCTTACACTGGCTCACATATTGAG
* * * ** *
72169433 GCCGATGTCATGTCCCAAACGTAGTCTTACACTAGCTCTTGTAACAATGCCAATGCCATGTTCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATG-TAATGCCATGTTCCA
*
72169498 AACATGGTCTTACACTGGTTCACAT
65 AACATGGTCTTACACTGGCTCACAT
72169523 GTACCCTAAC
Statistics
Matches: 330, Mismatches: 33, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
89 78 0.24
90 1 0.00
91 1 0.00
94 2 0.01
96 246 0.75
97 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGTAATGCCATGTTCCAA
ACATGGTCTTACACTGGCTCACATATTGAG
Found at i:72169397 original size:185 final size:185
Alignment explanation
Indices: 72169116--72169482 Score: 558
Period size: 185 Copynumber: 2.0 Consensus size: 185
72169106 TAATGCCATG
* *
72169116 TTCCAAACATGGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTA
1 TTCCAAACATGGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAAACATGGCCTTA
**
72169181 CACTAGCTCTCATAACAATGTTGAAGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATTG
66 CACTAGCTCTCATAACAATGTCCAAGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATTG
* *
72169246 AGGCTAATG-CTATGTCCAAAACATGGTCTTACACTAGCTCTCATAACAATGCTAA
131 AGGCCAATGTC-ATGTCCAAAACATAGTCTTACACTAGCTCTCATAACAATGCTAA
*
72169301 TTCCAAACATGGTCTTACATTGGCTCACATATTGAGGCCGATGCCATGTCCCAAACATGGCCTTA
1 TTCCAAACATGGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAAACATGGCCTTA
* * * *
72169366 CGCTAGCTCTCATAACAATG-CCAATGCCATGTTCCAAACATGGTTTTACATTGGCTCACATATT
66 CACTAGCTCTCATAACAATGTCCAA-GCCATGTTCCAAACATGGTCTTACACTAGCTCACATATT
* * * **
72169430 GAGGCCGATGTCATGTCCCAAACGTAGTCTTACACTAGCTCTTGTAACAATGC
130 GAGGCCAATGTCATGTCCAAAACATAGTCTTACACTAGCTCTCATAACAATGC
72169483 CAATGCCATG
Statistics
Matches: 164, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
184 2 0.01
185 161 0.98
186 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (185 bp):
TTCCAAACATGGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAAACATGGCCTTA
CACTAGCTCTCATAACAATGTCCAAGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATTG
AGGCCAATGTCATGTCCAAAACATAGTCTTACACTAGCTCTCATAACAATGCTAA
Found at i:72183273 original size:27 final size:27
Alignment explanation
Indices: 72183048--72183279 Score: 198
Period size: 27 Copynumber: 8.6 Consensus size: 27
72183038 AATTGTGTCT
* *
72183048 TTCAGTGTTCTCCATATGCACTATTCC
1 TTCAGTGTTTTCCATATGTACTATTCC
* ** *
72183075 TTTAGTGTTCGCCATATAG-ACCATTCC
1 TTCAGTGTTTTCCATAT-GTACTATTCC
* * * * *
72183102 TTTAGTTTTTTCTATACGTACTATTCT
1 TTCAGTGTTTTCCATATGTACTATTCC
* ** *
72183129 TTCAGAGTTCACCATATGTATTATTCC
1 TTCAGTGTTTTCCATATGTACTATTCC
*
72183156 TTCAGTGTTTGT-CATATGTACCATTCC
1 TTCAGTGTTT-TCCATATGTACTATTCC
* ** *
72183183 TTTAGTGTTTTCCATGCGTACTATTCT
1 TTCAGTGTTTTCCATATGTACTATTCC
* ** *
72183210 TTCAGAGTTCACCATATGTGCTATTCC
1 TTCAGTGTTTTCCATATGTACTATTCC
*
72183237 TTTAGTGTTTTCCATATGTACTATTCC
1 TTCAGTGTTTTCCATATGTACTATTCC
*
72183264 TTCAGTGTTTACCATA
1 TTCAGTGTTTTCCATA
72183280 CCATCTAGTC
Statistics
Matches: 157, Mismatches: 44, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
26 2 0.01
27 154 0.98
28 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.45
Consensus pattern (27 bp):
TTCAGTGTTTTCCATATGTACTATTCC
Found at i:72183292 original size:54 final size:54
Alignment explanation
Indices: 72183048--72183279 Score: 218
Period size: 54 Copynumber: 4.3 Consensus size: 54
72183038 AATTGTGTCT
* ** *
72183048 TTCAGTGTTCT-CCATATGCACTATTCCTTTAGTGTTCGCCATATAG-ACCATTCC
1 TTCAGTGTT-TACCATATGTACTATTCCTTTAGTGTTTTCCATAT-GTACTATTCC
* * * * * * ** *
72183102 TTTAGTTTTTTCTATACGTACTATT-CTTTCAGAGTTCACCATATGTATTATTCC
1 TTCAGTGTTTACCATATGTACTATTCCTTT-AGTGTTTTCCATATGTACTATTCC
** * ** *
72183156 TTCAGTGTTTGTCATATGTACCATTCCTTTAGTGTTTTCCATGCGTACTATTCT
1 TTCAGTGTTTACCATATGTACTATTCCTTTAGTGTTTTCCATATGTACTATTCC
* * *
72183210 TTCAGAGTTCACCATATGTGCTATTCCTTTAGTGTTTTCCATATGTACTATTCC
1 TTCAGTGTTTACCATATGTACTATTCCTTTAGTGTTTTCCATATGTACTATTCC
72183264 TTCAGTGTTTACCATA
1 TTCAGTGTTTACCATA
72183280 CCATCTAGTC
Statistics
Matches: 140, Mismatches: 34, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
53 6 0.04
54 130 0.93
55 4 0.03
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.45
Consensus pattern (54 bp):
TTCAGTGTTTACCATATGTACTATTCCTTTAGTGTTTTCCATATGTACTATTCC
Found at i:72183297 original size:81 final size:81
Alignment explanation
Indices: 72183045--72183280 Score: 314
Period size: 81 Copynumber: 2.9 Consensus size: 81
72183035 CGGAATTGTG
* * * ** *
72183045 TCTTTCAGTGTTCTCCATATGCACTATTCCTTTAGTGTTCGCCATATAG-ACCATTCCTTTAGTT
1 TCTTTCAGAGTTCACCATATGTACTATTCCTTTAGTGTTTTCCATAT-GTACCATTCCTTTAGTG
*
72183109 TTTTCTATACGTACTAT
65 TTTTCCATACGTACTAT
* *
72183126 TCTTTCAGAGTTCACCATATGTATTATTCCTTCAGTGTTTGT-CATATGTACCATTCCTTTAGTG
1 TCTTTCAGAGTTCACCATATGTACTATTCCTTTAGTGTTT-TCCATATGTACCATTCCTTTAGTG
*
72183190 TTTTCCATGCGTACTAT
65 TTTTCCATACGTACTAT
* * *
72183207 TCTTTCAGAGTTCACCATATGTGCTATTCCTTTAGTGTTTTCCATATGTACTATTCCTTCAGTGT
1 TCTTTCAGAGTTCACCATATGTACTATTCCTTTAGTGTTTTCCATATGTACCATTCCTTTAGTGT
*
72183272 TTACCATAC
66 TTTCCATAC
72183281 CATCTAGTCC
Statistics
Matches: 135, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
80 2 0.01
81 133 0.99
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.45
Consensus pattern (81 bp):
TCTTTCAGAGTTCACCATATGTACTATTCCTTTAGTGTTTTCCATATGTACCATTCCTTTAGTGT
TTTCCATACGTACTAT
Found at i:72183451 original size:28 final size:27
Alignment explanation
Indices: 72183414--72183488 Score: 89
Period size: 27 Copynumber: 2.7 Consensus size: 27
72183404 TTTAGACTGT
*
72183414 GCCACGAAGGCCTTCTTTTCCATAGATC
1 GCCACAAAGG-CTTCTTTTCCATAGATC
* *
72183442 GCCACAAAGGCTTACATTT-CATAGATT
1 GCCACAAAGGCTT-CTTTTCCATAGATC
72183469 GCCACAAAGGCTTCTGTTTC
1 GCCACAAAGGCTTCT-TTTC
72183489 TCCAGTGTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
26 1 0.03
27 26 0.65
28 13 0.32
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (27 bp):
GCCACAAAGGCTTCTTTTCCATAGATC
Found at i:72183640 original size:50 final size:50
Alignment explanation
Indices: 72183581--72183681 Score: 148
Period size: 50 Copynumber: 2.0 Consensus size: 50
72183571 TTCTTTTTTT
* ** *
72183581 TCTTTCCATATGATGCCATAACCCACTAGTTATGGTCTTATACGATATGG
1 TCTTTCCATATGATGCCATAACCCACCAACTATGGTCTTACACGATATGG
* *
72183631 TCTTTCCATATGATGCCGTAGCCCACCAACTATGGTCTTACACGATATGG
1 TCTTTCCATATGATGCCATAACCCACCAACTATGGTCTTACACGATATGG
72183681 T
1 T
72183682 GTCATGAACT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (50 bp):
TCTTTCCATATGATGCCATAACCCACCAACTATGGTCTTACACGATATGG
Found at i:72187083 original size:47 final size:47
Alignment explanation
Indices: 72187022--72188120 Score: 2038
Period size: 47 Copynumber: 23.4 Consensus size: 47
72187012 CAACCAAGAC
*
72187022 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187069 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
72187116 AGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTG-A
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
72187162 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187209 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187256 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187303 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187350 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187397 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187444 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187491 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187538 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187585 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187632 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187679 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187726 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187773 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187820 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187867 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187914 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72187961 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
72188008 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * ** *
72188055 AGTGTATATATGTGACAGGGCCGAGTGGCCAACATGATGGATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* **
72188102 AGTGCATAAATGTGATAAG
1 AGTGTATATGTGTGATAAG
72188121 TCCCGAAGGG
Statistics
Matches: 1031, Mismatches: 20, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 0.04
47 987 0.96
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:72188295 original size:37 final size:37
Alignment explanation
Indices: 72188239--72188317 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
72188229 CCGAGCTCTA
* * *
72188239 AAGACCCGATGACTACGTGTGG-GAATTTTGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
72188276 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
72188313 AAGAC
1 AAGAC
72188318 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:72192583 original size:39 final size:39
Alignment explanation
Indices: 72192529--72192621 Score: 168
Period size: 39 Copynumber: 2.4 Consensus size: 39
72192519 CAAGACACTG
72192529 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
* *
72192568 GAAATGTATCCGGGCTAAAGTCCTGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
72192607 GAAATGTATCCGGGC
1 GAAATGTATCCGGGC
72192622 AATGTATCCG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 52 1.00
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.24
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
Found at i:72192627 original size:13 final size:13
Alignment explanation
Indices: 72192609--72192634 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72192599 TCGTGCTGGA
72192609 AATGTATCCGGGC
1 AATGTATCCGGGC
72192622 AATGTATCCGGGC
1 AATGTATCCGGGC
72192635 TAAAGTCCCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (13 bp):
AATGTATCCGGGC
Found at i:72192650 original size:52 final size:52
Alignment explanation
Indices: 72192570--72192669 Score: 182
Period size: 52 Copynumber: 1.9 Consensus size: 52
72192560 TCGTGCTAGA
*
72192570 AATGTATCCGGGCTAAAGTCCTGCAGGCTTCGTGCTGGAAATGTATCCGGGC
1 AATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGC
*
72192622 AATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTGCTGGAAATGTATCC
1 AATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCC
72192670 AGGCTAAAGT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (52 bp):
AATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGC
Found at i:72192676 original size:39 final size:39
Alignment explanation
Indices: 72192622--72192696 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
72192612 GTATCCGGGC
* *
72192622 AATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTGCTGGA
1 AATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTGCTGGA
*
72192661 AATGTATCCAGGCTAAAGTCCCGCAGGCTTTGTGCT
1 AATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTGCT
72192697 AGTAATATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
AATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTGCTGGA
Found at i:72192687 original size:91 final size:91
Alignment explanation
Indices: 72192531--72192696 Score: 287
Period size: 91 Copynumber: 1.8 Consensus size: 91
72192521 AGACACTGGA
* *
72192531 AATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTAGAAATGTATCCGGGCTAAAGTCCTGCAG
1 AATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTAGAAATGTATCCAGGCTAAAGTCCCGCAG
72192596 GCTTCGTGCTGGAAATGTATCCGGGC
66 GCTTCGTGCTGGAAATGTATCCGGGC
* *
72192622 AATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTGCTGGAAATGTATCCAGGCTAAAGTCCCGCAG
1 AATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTAGAAATGTATCCAGGCTAAAGTCCCGCAG
*
72192687 GCTTTGTGCT
66 GCTTCGTGCT
72192697 AGTAATATAA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
91 70 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (91 bp):
AATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTAGAAATGTATCCAGGCTAAAGTCCCGCAG
GCTTCGTGCTGGAAATGTATCCGGGC
Found at i:72200979 original size:93 final size:93
Alignment explanation
Indices: 72200874--72201138 Score: 377
Period size: 93 Copynumber: 2.8 Consensus size: 93
72200864 GCCCATAAGT
* * * * **
72200874 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCATATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* * * *
72200939 CAAGCTTGGATGCCTAGTTACATCTGAC
66 CGAGTTTGGATGCCTAGTGACATCTCAC
* *
72200967 GAACTTGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
72201032 TGAGTTTGGATGCCTAGTGACATCTCAC
66 CGAGTTTGGATGCCTAGTGACATCTCAC
* * * *
72201060 GAACTCGAACTCAACTCAACGAGTTCAGATGTTCGCATCCATAAGTGAACTCGAACTTAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72201125 CGAGTTTGGATGCC
66 CGAGTTTGGATGCC
72201139 CAAATATCTG
Statistics
Matches: 152, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 152 1.00
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTTGGATGCCTAGTGACATCTCAC
Found at i:72201037 original size:46 final size:46
Alignment explanation
Indices: 72200866--72201130 Score: 154
Period size: 46 Copynumber: 5.7 Consensus size: 46
72200856 TGTAACCCGC
* * * **
72200866 CCATAAGTGAACTC-AGACTCAACTCAACGAGCTCGGGCGTTCATAT
1 CCATAAGTGAACTCGA-ACTCAACTCAACGAGTTCAGACGTTCGCAT
* * * * *
72200912 CCATAAGTGAACTCGGACTCAACTCAACAAGCTTGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAG-TT-CA-GAC--GTTCGCAT
* * * *
72200962 -C-TGA-CGAACTTGGACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCAGACGTTCGCAT
* ** *
72201005 CCATAAGTGAACTC-AGACTCAACTCAATGAGTTTGGATGCCTAGT-GACAT
1 CCATAAGTGAACTCGA-ACTCAACTCAACGAGTTCAGA--CGT--TCG-CAT
* * *
72201055 -C-TCA-CGAACTCGAACTCAACTCAACGAGTTCAGATGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCAGACGTTCGCAT
*
72201098 CCATAAGTGAACTCGAACTTAACTCAACGAGTT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGTT
72201131 TGGATGCCCA
Statistics
Matches: 166, Mismatches: 32, Indels: 42
0.69 0.13 0.17
Matches are distributed among these distances:
42 3 0.02
43 7 0.04
44 5 0.03
45 6 0.04
46 77 0.46
47 46 0.28
48 7 0.04
49 5 0.03
50 7 0.04
51 3 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGTTCAGACGTTCGCAT
Found at i:72203318 original size:49 final size:49
Alignment explanation
Indices: 72203145--72203376 Score: 293
Period size: 49 Copynumber: 4.7 Consensus size: 49
72203135 TCTATTGTGA
* * * * * *
72203145 GGTCGCATGTGTAGTACTAAGTGCTGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-T
* * * * **
72203196 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
72203245 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
72203295 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
72203344 GGTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
72203377 TGCGTACCAG
Statistics
Matches: 161, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 79 0.49
50 46 0.29
51 36 0.22
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:72203331 original size:99 final size:100
Alignment explanation
Indices: 72203145--72203384 Score: 304
Period size: 99 Copynumber: 2.4 Consensus size: 100
72203135 TCTATTGTGA
* * * *
72203145 GGTCGCATGTGTAGTACTAAGTGCTGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACATGTGTAG
* **
72203210 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
72203245 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAA-T-TGGTCACATGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACATGTGTA
*
72203308 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
72203344 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
72203385 AGATAGCTTT
Statistics
Matches: 119, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
98 35 0.29
99 44 0.37
100 1 0.01
101 39 0.33
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACATGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:72205484 original size:39 final size:39
Alignment explanation
Indices: 72205430--72205508 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
72205420 ATTCGGGATA
*
72205430 TCACAATCCCTTGCACAATGCAGTCTCTACTCTTACCCT
1 TCACAATCCCTTGCACAACGCAGTCTCTACTCTTACCCT
72205469 TCACAATCCCTTGCACAACGCAGTCTCTACTCTTACCCT
1 TCACAATCCCTTGCACAACGCAGTCTCTACTCTTACCCT
72205508 T
1 T
72205509 AGCATCCTTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.23, C:0.39, G:0.08, T:0.30
Consensus pattern (39 bp):
TCACAATCCCTTGCACAACGCAGTCTCTACTCTTACCCT
Found at i:72205653 original size:27 final size:27
Alignment explanation
Indices: 72205623--72205752 Score: 136
Period size: 27 Copynumber: 4.8 Consensus size: 27
72205613 CCTAATAGAG
*
72205623 TATCTCGTGTTTAACATCCCATCAGAC
1 TATCTCATGTTTAACATCCCATCAGAC
* * *
72205650 TATCTCATGTTTACCATCTCATCAGGC
1 TATCTCATGTTTAACATCCCATCAGAC
* * *
72205677 TATAC-CATGTTTAACGTCCCGTTAGAC
1 TAT-CTCATGTTTAACATCCCATCAGAC
** * *
72205704 TATCTCATGTTTAATGTCCCGTCAAAC
1 TATCTCATGTTTAACATCCCATCAGAC
*
72205731 TATCTCATGCTTAACATCCCAT
1 TATCTCATGTTTAACATCCCAT
72205753 TGAACTATCC
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 82 0.98
28 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.35
Consensus pattern (27 bp):
TATCTCATGTTTAACATCCCATCAGAC
Found at i:72205953 original size:45 final size:45
Alignment explanation
Indices: 72205904--72205989 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
72205894 TCCTAACTAC
* **
72205904 CATGATGTCATAGCATCTTTCAGCTATGGTCTTACTCATTTCCGT
1 CATGATATCATAGCATCTTTCAGCTATACTCTTACTCATTTCCGT
*
72205949 CATGATATCATAGTATCTTTCAGCTATACTCTTACTCATTT
1 CATGATATCATAGCATCTTTCAGCTATACTCTTACTCATTT
72205990 TAAGCGTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (45 bp):
CATGATATCATAGCATCTTTCAGCTATACTCTTACTCATTTCCGT
Found at i:72208961 original size:9 final size:9
Alignment explanation
Indices: 72208947--72208973 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
72208937 GCTAACCCAA
72208947 TGATCAATT
1 TGATCAATT
72208956 TGATCAATT
1 TGATCAATT
72208965 TGATCAATT
1 TGATCAATT
72208974 GGTGAAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (9 bp):
TGATCAATT
Found at i:72211931 original size:46 final size:46
Alignment explanation
Indices: 72211881--72212053 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
72211871 TGATTGAGCA
* *
72211881 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACG
* * * * * *
72211927 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAA--A--CG
* * *
72211974 TCCGAACTCATTGAGTTGAGCCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACG
*
72212020 -CTCGAGCTCGTTGAGTTGAGCCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGCCCGAGTTCACTTA
72212054 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 17, Indels: 16
0.76 0.13 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 58 0.57
47 26 0.25
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACG
Found at i:72212037 original size:93 final size:93
Alignment explanation
Indices: 72211878--72212048 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
72211868 GGATGATTGA
* * *
72211878 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
* *
72211943 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGCCCGAGTTCGTGAGATGTAACTAG
* * *
72211971 GCATCCGAACTCATTGAGTTGAGCCCGAGTTCATTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGTC-CGAACTCGTTGAG
72212035 TTGAGCCCGAGTTC
65 TTGAGCCCGAGTTC
72212049 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 1 0.01
93 68 0.99
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGCCCGAGTTCGTGAGATGTAACTAG
Found at i:72214520 original size:33 final size:33
Alignment explanation
Indices: 72214477--72214542 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
72214467 TAGCCAGTGT
*
72214477 AGGGACCTCGAGATTTGTTAAACCCGAGTGCCA
1 AGGGAACTCGAGATTTGTTAAACCCGAGTGCCA
*
72214510 AGGGAACTCGAGATTTGTTAAACCTGAGTGCCA
1 AGGGAACTCGAGATTTGTTAAACCCGAGTGCCA
72214543 GTGGTTTGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (33 bp):
AGGGAACTCGAGATTTGTTAAACCCGAGTGCCA
Found at i:72219200 original size:46 final size:46
Alignment explanation
Indices: 72219150--72219322 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
72219140 TGGTTGAGCA
*
72219150 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
72219196 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * * *
72219243 TTCGAACTCATTGAGTTGAGTCCGAATTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
72219289 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72219323 GGGGCGGGTT
Statistics
Matches: 99, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 57 0.58
47 25 0.25
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:72219315 original size:93 final size:93
Alignment explanation
Indices: 72219147--72219317 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
72219137 GGATGGTTGA
* * * *
72219147 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
72219212 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
72219240 GCATTCGAACTCATTGAGTTGAGTCCGAATTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
72219305 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
72219318 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72219758 original size:44 final size:46
Alignment explanation
Indices: 72219685--72219773 Score: 155
Period size: 44 Copynumber: 2.0 Consensus size: 46
72219675 CCTTCCTTTT
*
72219685 CATTCACTGTAGTCTTGAACAAGCCGGCTCAGGAATTGGGACAGGG
1 CATTCACTGTAGTCTTGAACAAGCCGGCTCAGGAATCGGGACAGGG
72219731 CATTCACT-TAGTCTTGAA-AAGCCGGCTCAGGAATCGGGACAGG
1 CATTCACTGTAGTCTTGAACAAGCCGGCTCAGGAATCGGGACAGG
72219774 TCGAAAGTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
44 24 0.57
45 10 0.24
46 8 0.19
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.21
Consensus pattern (46 bp):
CATTCACTGTAGTCTTGAACAAGCCGGCTCAGGAATCGGGACAGGG
Found at i:72224375 original size:48 final size:48
Alignment explanation
Indices: 72224261--72224361 Score: 141
Period size: 48 Copynumber: 2.1 Consensus size: 48
72224251 GCCACAGTAT
* *
72224261 ATATACACATCTCATACATATTTCACATTAACCATTTGGCTTTACCAC
1 ATATACATAGCTCATACATATTTCACATTAACCATTTGGCTTTACCAC
* * *
72224309 ATATGCATGGCTCATACATATTTCACATTAGCC-TTTCGGCTTTACCAC
1 ATATACATAGCTCATACATATTTCACATTAACCATTT-GGCTTTACCAC
72224357 ATATA
1 ATATA
72224362 TATATCTTGT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 3 0.07
48 43 0.93
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.36
Consensus pattern (48 bp):
ATATACATAGCTCATACATATTTCACATTAACCATTTGGCTTTACCAC
Found at i:72225683 original size:26 final size:27
Alignment explanation
Indices: 72225638--72225690 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
72225628 TTAAATTCTG
* *
72225638 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
72225665 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
72225691 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:72227375 original size:29 final size:30
Alignment explanation
Indices: 72227333--72227414 Score: 89
Period size: 29 Copynumber: 2.8 Consensus size: 30
72227323 TGCTTGGTTG
*
72227333 AAGAACTTGCACACACAGTGCCTCAATT-A
1 AAGAATTTGCACACACAGTGCCTCAATTAA
** * *
72227362 CCG-ATTTCGCACACATAGTG-CTCAGTTAA
1 AAGAATTT-GCACACACAGTGCCTCAATTAA
72227391 AAGAATTTGCACACACAGTGCCTC
1 AAGAATTTGCACACACAGTGCCTC
72227415 TAATCATTCG
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
28 9 0.22
29 25 0.61
30 7 0.17
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (30 bp):
AAGAATTTGCACACACAGTGCCTCAATTAA
Found at i:72227380 original size:57 final size:58
Alignment explanation
Indices: 72227304--72227414 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 58
72227294 GTGCCCACTG
** *
72227304 ACCGATCTCGCACACATAGTGCTTGGTT-GAAGAACTTGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCAGTTAAAAGAACTTGCACACACAGTGCCTCAATT
* *
72227361 ACCGATTTCGCACACATAGTGCTCAGTTAAAAGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCAGTTAAAAGAACTTGCACACACAGTGCCTC
72227415 TAATCATTCG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 25 0.52
58 23 0.48
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCAGTTAAAAGAACTTGCACACACAGTGCCTCAATT
Found at i:72227751 original size:40 final size:40
Alignment explanation
Indices: 72227696--72227812 Score: 137
Period size: 40 Copynumber: 3.0 Consensus size: 40
72227686 ATTTTGTCCA
* *
72227696 AGCACGAATGC-CTTCGGGGCTTAGCCCGGATACATCACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACC
* * *
72227735 AGCACGAATGCTCTTCGGGACTTAGCCCAGATATAACACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACC
* * * * *
72227775 ACCACGATTGCTCTTCGAGACTTAGCCCGAATATAACA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACA
72227813 TACTGAACTT
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 11 0.16
40 56 0.84
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACAACACC
Found at i:72228968 original size:48 final size:48
Alignment explanation
Indices: 72228814--72228961 Score: 206
Period size: 48 Copynumber: 3.1 Consensus size: 48
72228804 ATATATACAC
* * * **
72228814 ATCTCATACATATTTCACATTAACCATTTGGATTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** * *
72228862 GGCTCATACATATTTCACATTAGCCTTTCGGCTTTATCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
72228910 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
72228958 ATCT
1 ATCT
72228962 TGTACATCAA
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.39
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:72241510 original size:15 final size:14
Alignment explanation
Indices: 72241489--72241522 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
72241479 CTTGAATTTT
72241489 AAAAAAAAATAAAA
1 AAAAAAAAATAAAA
72241503 ATAAAAAAAATAAAA
1 A-AAAAAAAATAAAA
72241518 AAAAA
1 AAAAA
72241523 GAGGAGAGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (14 bp):
AAAAAAAAATAAAA
Found at i:72241511 original size:9 final size:9
Alignment explanation
Indices: 72241489--72241521 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
72241479 CTTGAATTTT
72241489 AAAAAAA-A
1 AAAAAAATA
*
72241497 ATAAAAATA
1 AAAAAAATA
72241506 AAAAAAATA
1 AAAAAAATA
72241515 AAAAAAA
1 AAAAAAA
72241522 AGAGGAGAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 6 0.27
9 16 0.73
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (9 bp):
AAAAAAATA
Found at i:72242581 original size:119 final size:119
Alignment explanation
Indices: 72242370--72243304 Score: 1559
Period size: 119 Copynumber: 7.9 Consensus size: 119
72242360 TTGAAGACAG
**
72242370 CAGATCTAGA-CTTCAGACA-TTTATGTTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
1 CAGATCTA-ACCTTCAGA-AGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
*
72242433 ACAAGAAACAAGTCGAGGACATAGCAGATTTGACTCTCAGACTTTCTCAAAGATAC
64 ACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACTTTCTCAAAGATAC
72242489 CAGATCTAACCTTCAGAAGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGAAGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
*
72242554 AAGAAACAAGTCGAGGACATAGCAGATTTGACTCTCAGACTTTCTCAAAGATAC
66 AAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACTTTCTCAAAGATAC
72242608 CAGATCTAACCTTCAGAAGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGAAGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
*
72242673 AAGAAACAAGTCGAGGACATAGCAGATTTGACTCTCAGACTTTCTCAAAGATAC
66 AAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACTTTCTCAAAGATAC
*
72242727 CAGATCTAACCTTCAGAAGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTTC
1 CAGATCTAACCTTCAGAAGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
* * * *
72242792 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAAATAG
66 AAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACTTTCTCAAAGATAC
* *
72242846 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGATATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGAAGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
* * * *
72242911 AAGGAACAAATTGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAGATAG
66 AAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACTTTCTCAAAGATAC
* *
72242965 CAGATCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGAAGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
* ** * *
72243030 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGAAATTCTCAAATATAA
66 AAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACTTTCTCAAAGATAC
*
72243084 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGAAGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
* ** * *
72243149 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGAAATTCTCAAATATAA
66 AAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACTTTCTCAAAGATAC
*
72243203 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGAAGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
*
72243268 AAGAAACAAATCGAAGACATAGCAGATTTGACTCTCA
66 AAGAAACAAATCGAGGACATAGCAGATTTGACTCTCA
72243305 AATGTTCTCA
Statistics
Matches: 791, Mismatches: 23, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
118 2 0.00
119 789 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (119 bp):
CAGATCTAACCTTCAGAAGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
AAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACTTTCTCAAAGATAC
Found at i:72243344 original size:83 final size:83
Alignment explanation
Indices: 72243240--72243425 Score: 282
Period size: 83 Copynumber: 2.2 Consensus size: 83
72243230 GAAGCAGATC
* * * *
72243240 CAAGATGATTTGGTATTCTTGTGTTTACAAGAAACAAATCGAAGACATAGCAGATTTGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCGAAGACATAGCAGATATGACTCTCA
72243305 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * * *
72243323 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTTA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCGAAGACATAGCAGATATGACTCTCA
72243388 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
72243406 CAAGATGATTTGACATCCTT
1 CAAGATGATTTGGCATCCTT
72243426 ACAAATCGAA
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
83 92 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (83 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGAAACAAATCGAAGACATAGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:72246383 original size:26 final size:27
Alignment explanation
Indices: 72246338--72246390 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
72246328 TTAAATTCTG
* *
72246338 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
72246365 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
72246391 CTAGCTAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:72247668 original size:67 final size:67
Alignment explanation
Indices: 72247560--72247693 Score: 268
Period size: 67 Copynumber: 2.0 Consensus size: 67
72247550 TTCTGCGACT
72247560 TGATTTAGCGGTCACGAAACCACTTCCCGACTAGGGTCAGAATAGGGCTGTTATACTATGAAGCA
1 TGATTTAGCGGTCACGAAACCACTTCCCGACTAGGGTCAGAATAGGGCTGTTATACTATGAAGCA
72247625 TA
66 TA
72247627 TGATTTAGCGGTCACGAAACCACTTCCCGACTAGGGTCAGAATAGGGCTGTTATACTATGAAGCA
1 TGATTTAGCGGTCACGAAACCACTTCCCGACTAGGGTCAGAATAGGGCTGTTATACTATGAAGCA
72247692 TA
66 TA
72247694 CCTAACCTAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (67 bp):
TGATTTAGCGGTCACGAAACCACTTCCCGACTAGGGTCAGAATAGGGCTGTTATACTATGAAGCA
TA
Found at i:72274420 original size:21 final size:20
Alignment explanation
Indices: 72274374--72274421 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
72274364 TGTAACTTAA
*
72274374 TTAAGTAAATTAAGATTAAT
1 TTAAGTAAATTAAGAATAAT
* *
72274394 TAAAGTTAATTAAGTAATAAT
1 TTAAGTAAATTAAG-AATAAT
72274415 TTAAGTA
1 TTAAGTA
72274422 TAAAATTGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (20 bp):
TTAAGTAAATTAAGAATAAT
Found at i:72276851 original size:42 final size:42
Alignment explanation
Indices: 72276804--72276956 Score: 191
Period size: 42 Copynumber: 3.6 Consensus size: 42
72276794 CTAAGACAAT
* *
72276804 GTGTAAGACCATGTCTGGGATATGGCATCAATATGAGACTAC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTAC
* * *
72276846 GTGTAAGACCATATCTGGCATATGTCATCGATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTAC
* * * *
72276888 GTGTAAGACCATAGCT-GGATTATTGGTATCGATACGAGATTAC
1 GTGTAAGACCATATCTGGGA-TA-TGGCATCGATATGAGACTAC
*
72276931 ATGTAAGACCATATCTGGGATATGGC
1 GTGTAAGACCATATCTGGGATATGGC
72276957 GTTGGTACGG
Statistics
Matches: 93, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
41 2 0.02
42 57 0.61
43 31 0.33
44 3 0.03
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTAC
Found at i:72276977 original size:85 final size:83
Alignment explanation
Indices: 72276803--72276956 Score: 186
Period size: 85 Copynumber: 1.8 Consensus size: 83
72276793 ACTAAGACAA
* *
72276803 TGTGTAAGACCATGTCTGGGATATGGCATCAATATGAGACTACGTGTAAGACCATATCTGGCATA
1 TGTGTAAGACCATGTCTGGGATATGGCATCAATACGAGACTACATGTAAGACCATATCTGGCATA
* *
72276868 TGTCATCGATATGAGACT
66 TGGCATCGATACGAGACT
* * *
72276886 TCGTGTAAGACCATAG-CT-GGATTATTGGTATCGATACGAGATTACATGTAAGACCATATCTGG
1 T-GTGTAAGACCAT-GTCTGGGA-TA-TGGCATCAATACGAGACTACATGTAAGACCATATCTGG
*
72276949 GATATGGC
62 CATATGGC
72276957 GTTGGTACGG
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
83 4 0.07
84 16 0.27
85 40 0.67
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (83 bp):
TGTGTAAGACCATGTCTGGGATATGGCATCAATACGAGACTACATGTAAGACCATATCTGGCATA
TGGCATCGATACGAGACT
Found at i:72281292 original size:12 final size:12
Alignment explanation
Indices: 72281275--72281299 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72281265 TAAGGACAAA
72281275 AATATAATTTTT
1 AATATAATTTTT
72281287 AATATAATTTTT
1 AATATAATTTTT
72281299 A
1 A
72281300 CCATAGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
AATATAATTTTT
Found at i:72281666 original size:42 final size:42
Alignment explanation
Indices: 72281619--72281782 Score: 202
Period size: 42 Copynumber: 3.9 Consensus size: 42
72281609 TTAAGGCTAC
*
72281619 TGAGACTATGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGACTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* *
72281661 TGAGACTACGTATAAGACCATATCTGGGATATGGCATTGATA
1 TGAGACTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* * * * ***
72281703 TGAGACTTCGTGTAAGACCATAGCTAGGCTATTAAAATCGATA
1 TGAGACTACGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* * *
72281746 CGAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 TGAGACTACGTGTAAGACCATATCTGGGATATGGCAT
72281783 TCGTACGGTA
Statistics
Matches: 99, Mismatches: 22, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 68 0.69
43 31 0.31
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (42 bp):
TGAGACTACGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:72287035 original size:52 final size:52
Alignment explanation
Indices: 72286957--72287056 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
72286947 CCCACTCATG
72286957 TATCTAGAACCTATTTATGGATTTATTCCC-TCATGACATTCATAGTGTCACA
1 TATCTAGAACCTATTTATGGATTTATTCCCAT-ATGACATTCATAGTGTCACA
*
72287009 TATCTAGAACCTGTTTATGGATTTATTCCCATATGACATTCATAGTGT
1 TATCTAGAACCTATTTATGGATTTATTCCCATATGACATTCATAGTGT
72287057 GGCATACCTA
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
52 45 0.98
53 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (52 bp):
TATCTAGAACCTATTTATGGATTTATTCCCATATGACATTCATAGTGTCACA
Found at i:72287595 original size:56 final size:57
Alignment explanation
Indices: 72287519--72287628 Score: 161
Period size: 56 Copynumber: 1.9 Consensus size: 57
72287509 AAATTAATAC
*
72287519 AAATGTGAAACATTTTGAAATAATTATGG-TTTCTCCAAAATGAAAATGAAAATGGAG
1 AAATGTGAAACATTTGGAAATAA-TATGGTTTTCTCCAAAATGAAAATGAAAATGGAG
* * *
72287576 AAATG-GAATCATTTGGAAATAATGTGGTTTTCTCCAAAGTGAAAATGAAAATG
1 AAATGTGAAACATTTGGAAATAATATGGTTTTCTCCAAAATGAAAATGAAAATG
72287629 AAAAATGAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
55 4 0.08
56 39 0.81
57 5 0.10
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (57 bp):
AAATGTGAAACATTTGGAAATAATATGGTTTTCTCCAAAATGAAAATGAAAATGGAG
Found at i:72287635 original size:7 final size:7
Alignment explanation
Indices: 72287617--72287645 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
72287607 CTCCAAAGTG
72287617 AAAATG-
1 AAAATGA
72287623 AAAATGA
1 AAAATGA
72287630 AAAATGA
1 AAAATGA
72287637 AAAATGA
1 AAAATGA
72287644 AA
1 AA
72287646 TGACCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (7 bp):
AAAATGA
Found at i:72288512 original size:8 final size:8
Alignment explanation
Indices: 72288499--72288537 Score: 69
Period size: 8 Copynumber: 4.9 Consensus size: 8
72288489 GATATTGACC
72288499 AATTTTTA
1 AATTTTTA
*
72288507 AATTTTTT
1 AATTTTTA
72288515 AATTTTTA
1 AATTTTTA
72288523 AATTTTTA
1 AATTTTTA
72288531 AATTTTT
1 AATTTTT
72288538 CTCTCTTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (8 bp):
AATTTTTA
Found at i:72289663 original size:17 final size:17
Alignment explanation
Indices: 72289623--72289665 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
72289613 TTTTGCGGCG
* *
72289623 CACAAAAAACAATTTTA
1 CACAAATAACAATTTCA
* *
72289640 CAGAAATAACAGTTTCA
1 CACAAATAACAATTTCA
72289657 CACAAATAA
1 CACAAATAA
72289666 ACATTTTGAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.56, C:0.19, G:0.05, T:0.21
Consensus pattern (17 bp):
CACAAATAACAATTTCA
Found at i:72293355 original size:20 final size:20
Alignment explanation
Indices: 72293332--72293372 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
72293322 ATTTAGATAC
72293332 TTTATTTTATTTTTAATCAA
1 TTTATTTTATTTTTAATCAA
72293352 TTTATTTTATTTTTAATCAA
1 TTTATTTTATTTTTAATCAA
72293372 T
1 T
72293373 CCTTTGAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTATTTTATTTTTAATCAA
Found at i:72295081 original size:49 final size:49
Alignment explanation
Indices: 72295028--72295155 Score: 132
Period size: 49 Copynumber: 2.6 Consensus size: 49
72295018 TGGTAGATGT
*
72295028 GATAGACCACTAGTAGGGCATGTTAGTTGGAAACCA-AATGGATGAATAA
1 GATAGACCACTAGTAGGGCATGTTAGTTGGAAACCAGAATGG-CGAATAA
* * * *** * * * **
72295077 GATAGGCTACTGGTAGGGCATGTTAGTTACTAATCAGAGTGGCGGATGT
1 GATAGACCACTAGTAGGGCATGTTAGTTGGAAACCAGAATGGCGAATAA
72295126 GATAGACCACTAGTAGGGCATGTTAGTTGG
1 GATAGACCACTAGTAGGGCATGTTAGTTGG
72295156 TAACTAGATT
Statistics
Matches: 61, Mismatches: 17, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
49 57 0.93
50 4 0.07
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.26
Consensus pattern (49 bp):
GATAGACCACTAGTAGGGCATGTTAGTTGGAAACCAGAATGGCGAATAA
Found at i:72295144 original size:98 final size:98
Alignment explanation
Indices: 72294975--72295155 Score: 272
Period size: 98 Copynumber: 1.8 Consensus size: 98
72294965 CAGTACCTGG
* * * * * * *
72294975 ATAAGATGGGCCACTGGTATGGCATGTTTGCTGCTAATTAGATTGGTAGATGTGATAGACCACTA
1 ATAAGATAGGCCACTGGTAGGGCATGTTAGCTACTAATCAGAGTGGCAGATGTGATAGACCACTA
72295040 GTAGGGCATGTTAGTTGGAAACCAAATGGATGA
66 GTAGGGCATGTTAGTTGGAAACCAAATGGATGA
* * *
72295073 ATAAGATAGGCTACTGGTAGGGCATGTTAGTTACTAATCAGAGTGGCGGATGTGATAGACCACTA
1 ATAAGATAGGCCACTGGTAGGGCATGTTAGCTACTAATCAGAGTGGCAGATGTGATAGACCACTA
72295138 GTAGGGCATGTTAGTTGG
66 GTAGGGCATGTTAGTTGG
72295156 TAACTAGATT
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
98 73 1.00
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.28
Consensus pattern (98 bp):
ATAAGATAGGCCACTGGTAGGGCATGTTAGCTACTAATCAGAGTGGCAGATGTGATAGACCACTA
GTAGGGCATGTTAGTTGGAAACCAAATGGATGA
Found at i:72307259 original size:33 final size:33
Alignment explanation
Indices: 72307208--72307273 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
72307198 AATCATAATC
* * *
72307208 ATAATTAATTAATGATTAGATTACATCTAATAA
1 ATAATTAAATAATGATTAGAGTACATATAATAA
72307241 ATAA-TAAATAATGTATTAGAGTACATATAATAA
1 ATAATTAAATAATG-ATTAGAGTACATATAATAA
72307274 TTATAATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 8 0.28
33 21 0.72
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.36
Consensus pattern (33 bp):
ATAATTAAATAATGATTAGAGTACATATAATAA
Found at i:72313513 original size:81 final size:80
Alignment explanation
Indices: 72313347--72313495 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 80
72313337 ATGACAAATT
* * * *
72313347 AGCTATATGTGGCACTTAGTGTGCGATTTGACATGGCTTCGGCTATATATGGCACTTAGTGAGCG
1 AGCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCGACTATATATGGCACTTAGTGAGCG
72313412 ATTCAACATAGCTTC
66 ATTCAACATAGCTTC
* *
72313427 AGCTATATATGGCACTTAGTGTGCGATATCGAGATAGCTTCGACTATATATGGCACTTAGTGTGC
1 AGCTATATATGGCACTTAGTGTGCGAT-TCGACATAGCTTCGACTATATATGGCACTTAGTGAGC
72313492 GATT
65 GATT
72313496 TGAGATAGCT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 26 0.42
81 36 0.58
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (80 bp):
AGCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCGACTATATATGGCACTTAGTGAGCG
ATTCAACATAGCTTC
Found at i:72313524 original size:40 final size:40
Alignment explanation
Indices: 72313348--72313513 Score: 224
Period size: 40 Copynumber: 4.1 Consensus size: 40
72313338 TGACAAATTA
* * *
72313348 GCTATATGTGGCACTTAGTGTGCGATTTGACATGGCTTCG
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
* * *
72313388 GCTATATATGGCACTTAGTGAGCGATTCAACATAGCTTCA
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
*
72313428 GCTATATATGGCACTTAGTGTGCGATATCGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAT-TCGACATAGCTTCG
* * * *
72313469 ACTATATATGGCACTTAGTGTGCGATTTGAGATAGCTTTG
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
72313509 GCTAT
1 GCTAT
72313514 GAACGACACT
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 75 0.68
41 36 0.32
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (40 bp):
GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
Found at i:72317619 original size:48 final size:48
Alignment explanation
Indices: 72317536--72317717 Score: 258
Period size: 48 Copynumber: 3.8 Consensus size: 48
72317526 TACGAAATCT
** * * *
72317536 CATATCAGTGCCGATGTCAT-TCTCAGACATGGTCTTACACTAGCACA
1 CATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA
* *
72317583 CATATCAACGCTGATGCCACGTCCCAGACATGGTCTTACACTAGCTCA
1 CATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA
* * *
72317631 CATATCAACACCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCA
1 CATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA
*
72317679 CATATCAACGCCGATGCCATGTCCTAGACATGGTCTTAC
1 CATATCAACGCCGATGCCATGTCCCAGACATGGTCTTAC
72317718 TAGGATCTCA
Statistics
Matches: 120, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 15 0.12
48 105 0.88
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (48 bp):
CATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA
Found at i:72318014 original size:48 final size:48
Alignment explanation
Indices: 72317916--72318019 Score: 145
Period size: 48 Copynumber: 2.2 Consensus size: 48
72317906 TACTTACACA
* * *
72317916 CATATCGATGCCAATGCCATGTCCCATACATGGTCTTACATGGGATCT
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGACCT
* * *
72317964 CATATCGGTGCCGATGCCATGTCCCAGACATGGTCTTATACGGGACCT
1 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGACCT
*
72318012 CATCTCGA
1 CATATCGA
72318020 AATTTTGTCG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (48 bp):
CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGACCT
Found at i:72322207 original size:21 final size:21
Alignment explanation
Indices: 72322183--72322225 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
72322173 CGCATACGCC
72322183 AACAGAAGCTCATAAGAGCTT
1 AACAGAAGCTCATAAGAGCTT
*
72322204 AACAGAAGCTCGTAAGAGCTT
1 AACAGAAGCTCATAAGAGCTT
72322225 A
1 A
72322226 TCCACCCGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.19
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTT
Found at i:72327207 original size:30 final size:30
Alignment explanation
Indices: 72327149--72327208 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72327139 TTCCCGAGCC
*
72327149 TAGGGGAAAAAGTGTAATTATGTAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
72327179 TAGGGGCAAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAAGTGTAATTATGCAAAAGTT
72327209 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:72334730 original size:30 final size:30
Alignment explanation
Indices: 72334672--72334731 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
72334662 TTCCCGAGCC
* *
72334672 TAGGGGCAAAAGCGTAATTATGCAAAAGTT
1 TAGGGGCAAAAACGTAATTATACAAAAGTT
* * *
72334702 TAGGGGCAAAAATGTAATTTTACCAAAGTT
1 TAGGGGCAAAAACGTAATTATACAAAAGTT
72334732 CATATTAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (30 bp):
TAGGGGCAAAAACGTAATTATACAAAAGTT
Found at i:72341446 original size:38 final size:37
Alignment explanation
Indices: 72341385--72341726 Score: 468
Period size: 38 Copynumber: 8.9 Consensus size: 37
72341375 ATTTCATGTG
*
72341385 TATCCGGGCTTAAAGACCCGCAGGCTATGTGCTGGTATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TGTGCTGGTATTA
*
72341425 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGC-TTGTGCTGGTATTA
*
72341463 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTT-GTGCTGGTATTA
*
72341501 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGC-TTGTGCTGGTATTA
*
72341539 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTT-GTGCTGGTATTA
*
72341577 TATCCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGC-TTGTGCTGGTATTA
*
72341615 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTT-GTGCTGGTATTA
*
72341653 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGAATTA
1 TATCCGGGTTAAATCCCGCAGGCTT-GTGCTGGTATTA
* * *
72341691 TATTCGAGCTTAAAGTCCCGCAGGTTTTGTGCTGGT
1 TATCCG-GGTTAAA-TCCCGCAGG-CTTGTGCTGGT
72341727 GACTGGATTC
Statistics
Matches: 274, Mismatches: 19, Indels: 18
0.88 0.06 0.06
Matches are distributed among these distances:
37 6 0.02
38 226 0.82
39 16 0.06
40 24 0.09
41 2 0.01
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (37 bp):
TATCCGGGTTAAATCCCGCAGGCTTGTGCTGGTATTA
Found at i:72341484 original size:76 final size:76
Alignment explanation
Indices: 72341385--72341723 Score: 547
Period size: 76 Copynumber: 4.4 Consensus size: 76
72341375 ATTTCATGTG
* *
72341385 TATCCGGGCTTAAAGACCCGCAGGCTAT-GTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCT
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTAGTATTATATCCGGGTTAAATCCCGCAGGCT
72341449 TTGTGCTGGTAATA
63 TTGTGCTGGTAATA
72341463 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTTG
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTTG
72341528 TGCTGGTAATA
66 TGCTGGTAATA
72341539 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTTG
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTTG
72341604 TGCTGGTAATA
66 TGCTGGTAATA
*
72341615 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTAG
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTTG
72341680 TGCTGG-AATTA
66 TGCTGGTAA-TA
* * * *
72341691 TATTCGAGCTTAAAGTCCCGCAGGTTTTGTGCT
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCT
72341724 GGTGACTGGA
Statistics
Matches: 250, Mismatches: 7, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
75 3 0.01
76 212 0.85
77 11 0.04
78 24 0.10
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.31
Consensus pattern (76 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTTG
TGCTGGTAATA
Found at i:72342903 original size:48 final size:48
Alignment explanation
Indices: 72342832--72343201 Score: 327
Period size: 48 Copynumber: 7.7 Consensus size: 48
72342822 GTGAGCCAGC
*
72342832 GTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGT
1 GTAAGACCATGTCTGGAACATGGCATCGGCATTTATATGAGAGCTAGT
* * * ** *
72342880 GTAAGACCACGTCTGGGACATGGCATCGGCCTCGACAT-ATGAGCTAGT
1 GTAAGACCATGTCTGGAACATGGCATCGGCATTTATATGA-GAGCTAGT
* *** *
72342928 GTAAGACCATGTTTGGAACATGGCATCAATATTTATATGAGAGCTTGT
1 GTAAGACCATGTCTGGAACATGGCATCGGCATTTATATGAGAGCTAGT
* * * **
72342976 GTAAAACCATGTCTGGGACATGGCATCGGCCTCGGCATAT--GAGCTAGT
1 GTAAGACCATGTCTGGAACATGGCATCGGCAT--TTATATGAGAGCTAGT
* *** *
72343024 GTAAGACCATGTTTGGAACATGGCATCAATATTTATATGAGAGCTTGT
1 GTAAGACCATGTCTGGAACATGGCATCGGCATTTATATGAGAGCTAGT
* * * **
72343072 GTAAAACCATGTCTGGGACATGGCATCGGCCTCGGCATAT--GAGCTAGT
1 GTAAGACCATGTCTGGAACATGGCATCGGCAT--TTATATGAGAGCTAGT
* * ** *
72343120 GTAAGACCATGTTTGGAACATGGCTTCGGCACCGATATATGAGAGCCAGT
1 GTAAGACCATGTCTGGAACATGGCATCGGCA--TTTATATGAGAGCTAGT
* * *
72343170 GTAAGACCATGTCTGGGACACGGTATCGGCAT
1 GTAAGACCATGTCTGGAACATGGCATCGGCAT
72343202 CTTACCCTTT
Statistics
Matches: 247, Mismatches: 63, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
46 4 0.02
47 1 0.00
48 200 0.81
49 1 0.00
50 41 0.17
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
GTAAGACCATGTCTGGAACATGGCATCGGCATTTATATGAGAGCTAGT
Found at i:72342990 original size:96 final size:96
Alignment explanation
Indices: 72342823--72343143 Score: 561
Period size: 96 Copynumber: 3.3 Consensus size: 96
72342813 TAGGGTTATG
* * *** * *
72342823 TGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCTAGTGTAAGACC
1 TGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAATATTTATATGAGAGCTTGTGTAAAACC
* *
72342888 ACGTCTGGGACATGGCATCGGCCTCGACATA
66 ATGTCTGGGACATGGCATCGGCCTCGGCATA
72342919 TGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAATATTTATATGAGAGCTTGTGTAAAACC
1 TGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAATATTTATATGAGAGCTTGTGTAAAACC
72342984 ATGTCTGGGACATGGCATCGGCCTCGGCATA
66 ATGTCTGGGACATGGCATCGGCCTCGGCATA
72343015 TGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAATATTTATATGAGAGCTTGTGTAAAACC
1 TGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAATATTTATATGAGAGCTTGTGTAAAACC
72343080 ATGTCTGGGACATGGCATCGGCCTCGGCATA
66 ATGTCTGGGACATGGCATCGGCCTCGGCATA
72343111 TGAGCTAGTGTAAGACCATGTTTGGAACATGGC
1 TGAGCTAGTGTAAGACCATGTTTGGAACATGGC
72343144 TTCGGCACCG
Statistics
Matches: 216, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 216 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (96 bp):
TGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAATATTTATATGAGAGCTTGTGTAAAACC
ATGTCTGGGACATGGCATCGGCCTCGGCATA
Found at i:72351375 original size:21 final size:21
Alignment explanation
Indices: 72351324--72351375 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
72351314 TACTTATTTA
* ** *
72351324 GATCAAGATAAACCTTGTATG
1 GATCAAGATCAACCTCATACG
72351345 GATCAAGATCAACCTCATACG
1 GATCAAGATCAACCTCATACG
72351366 GATCAAGATC
1 GATCAAGATC
72351376 GAGAAAAAGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.23
Consensus pattern (21 bp):
GATCAAGATCAACCTCATACG
Found at i:72358393 original size:17 final size:18
Alignment explanation
Indices: 72358373--72358409 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
72358363 TATTAAAAAT
72358373 ATAGTATTAT-TATTT-TA
1 ATAGT-TTATATATTTATA
72358390 ATAGTTTATATATTTATA
1 ATAGTTTATATATTTATA
72358408 AT
1 AT
72358410 TGTTAAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.22
17 10 0.56
18 4 0.22
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (18 bp):
ATAGTTTATATATTTATA
Found at i:72361951 original size:49 final size:49
Alignment explanation
Indices: 72361877--72362903 Score: 1890
Period size: 49 Copynumber: 21.1 Consensus size: 49
72361867 CCCTTCGGGA
* ** * * *
72361877 CTTATCACAT-T-TATACACTTTCACATCCATCATGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72361924 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72361973 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362020 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362069 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362118 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362167 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362216 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362265 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362314 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362363 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362412 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362461 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362510 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362559 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362608 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362657 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362706 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCC--ATTAGGC
72362757 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72362804 CCTATCACATATATATACACTTTCACATTCATCACAT--GCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362851 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72362900 CTTA
1 CTTA
72362904 CTATCATTTC
Statistics
Matches: 956, Mismatches: 14, Indels: 18
0.97 0.01 0.02
Matches are distributed among these distances:
47 114 0.12
48 1 0.00
49 826 0.86
51 15 0.02
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72366780 original size:20 final size:20
Alignment explanation
Indices: 72366742--72366779 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
72366732 CTTCAAAGTA
72366742 AAAATGAATCTCAAATTTTG
1 AAAATGAATCTCAAATTTTG
*
72366762 AAAATGTATCTC-AATTTT
1 AAAATGAATCTCAAATTTT
72366780 TTATTTAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (20 bp):
AAAATGAATCTCAAATTTTG
Found at i:72367564 original size:94 final size:94
Alignment explanation
Indices: 72367398--72367683 Score: 563
Period size: 94 Copynumber: 3.0 Consensus size: 94
72367388 TCCAACAACC
*
72367398 ACAATGGTTGGAATTTAATTTAGGGGTATAAATACCAGCTTCCAAATATCCTACAATAACAAAAA
1 ACAAAGGTTGGAATTTAATTTAGGGGTATAAATACCAGCTTCCAAATATCCTACAATAACAAAAA
72367463 AGCATACTCAAGCAAAAATCATCAATCAA
66 AGCATACTCAAGCAAAAATCATCAATCAA
72367492 ACAAAGGTTGGAATTTAATTTAGGGGTATAAATACCAGCTTCCAAATATCCTACAATAACAAAAA
1 ACAAAGGTTGGAATTTAATTTAGGGGTATAAATACCAGCTTCCAAATATCCTACAATAACAAAAA
72367557 AGCATACTCAAGCAAAAATCATCAATCAA
66 AGCATACTCAAGCAAAAATCATCAATCAA
72367586 ACAAAGGTTGGAATTTAATTTAGGGGTATAAATACCAGCTTCCAAATATCCTACAATAACAAAAA
1 ACAAAGGTTGGAATTTAATTTAGGGGTATAAATACCAGCTTCCAAATATCCTACAATAACAAAAA
72367651 AGCATACTCAAGCAAAAATCATCAATCAA
66 AGCATACTCAAGCAAAAATCATCAATCAA
72367680 ACAA
1 ACAA
72367684 CATTTGTGCC
Statistics
Matches: 191, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 191 1.00
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.23
Consensus pattern (94 bp):
ACAAAGGTTGGAATTTAATTTAGGGGTATAAATACCAGCTTCCAAATATCCTACAATAACAAAAA
AGCATACTCAAGCAAAAATCATCAATCAA
Found at i:72369011 original size:16 final size:17
Alignment explanation
Indices: 72368985--72369016 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
72368975 TTAAATTAAC
72368985 TAAATTAATTTCTCAAT
1 TAAATTAATTTCTCAAT
72369002 TAAA-TAATTTCTCAA
1 TAAATTAATTTCTCAA
72369017 CCCACTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAATTAATTTCTCAAT
Found at i:72374592 original size:23 final size:23
Alignment explanation
Indices: 72374545--72374646 Score: 111
Period size: 23 Copynumber: 4.3 Consensus size: 23
72374535 TAGCTTGTAG
*
72374545 GAGCTTACTG-TTCAACTCGAA-A
1 GAGCTTACTGTTTCAGCTC-AATA
72374567 GAGCTTACTGTTTCAGCTCAATA
1 GAGCTTACTGTTTCAGCTCAATA
72374590 GAGCTTA-TCGTTTCAGCTCAATA
1 GAGCTTACT-GTTTCAGCTCAATA
* *
72374613 GAGCTTACTATTCATCAGCTCAAGA
1 GAGCTTACTGTT--TCAGCTCAATA
72374638 GGAGCTTAC
1 -GAGCTTAC
72374647 CGATCATGGC
Statistics
Matches: 70, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
22 13 0.19
23 38 0.54
24 1 0.01
25 10 0.14
26 8 0.11
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCAATA
Found at i:72385204 original size:7 final size:7
Alignment explanation
Indices: 72385180--72385212 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
72385170 GAATAGAGAT
72385180 AAAAGAA
1 AAAAGAA
72385187 AAAA-AA
1 AAAAGAA
72385193 AAAAGAA
1 AAAAGAA
72385200 AAAAGAA
1 AAAAGAA
72385207 AGAAAG
1 A-AAAG
72385213 CATTAACAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.25
7 14 0.58
8 4 0.17
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:72387032 original size:27 final size:27
Alignment explanation
Indices: 72386951--72387032 Score: 64
Period size: 27 Copynumber: 3.1 Consensus size: 27
72386941 GACGAGATAT
72386951 TCAATAACTTTAAAAAGTTAGATTTTG
1 TCAATAACTTTAAAAAGTTAGATTTTG
* * * * * *
72386978 TCACACACAATGT---AAG-TAAAATTAG
1 TCA-ATA-ACTTTAAAAAGTTAGATTTTG
72387003 TCAATAACTTTAAAAAGTTAGATTTTG
1 TCAATAACTTTAAAAAGTTAGATTTTG
72387030 TCA
1 TCA
72387033 CGCAAAAATT
Statistics
Matches: 37, Mismatches: 12, Indels: 12
0.61 0.20 0.20
Matches are distributed among these distances:
23 3 0.08
24 2 0.05
25 9 0.24
26 6 0.16
27 12 0.32
28 2 0.05
29 3 0.08
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (27 bp):
TCAATAACTTTAAAAAGTTAGATTTTG
Found at i:72389449 original size:35 final size:35
Alignment explanation
Indices: 72389409--72389479 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
72389399 AGAAGTACAA
72389409 TTACAATAAGCCTATGTCTAGTGTCGTAGAGTACC
1 TTACAATAAGCCTATGTCTAGTGTCGTAGAGTACC
*
72389444 TTACAATAGGCCTATGTCTAGTGTCGTAGAGTACC
1 TTACAATAAGCCTATGTCTAGTGTCGTAGAGTACC
72389479 T
1 T
72389480 ATCCATGCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (35 bp):
TTACAATAAGCCTATGTCTAGTGTCGTAGAGTACC
Found at i:72390688 original size:19 final size:19
Alignment explanation
Indices: 72390666--72390704 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
72390656 ATTAAAAACT
* *
72390666 ATAAAACAAAGTAAAGTAA
1 ATAAAACAAAATAAAATAA
*
72390685 ATAAAATAAAATAAAATAA
1 ATAAAACAAAATAAAATAA
72390704 A
1 A
72390705 GTTCTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (19 bp):
ATAAAACAAAATAAAATAA
Found at i:72394610 original size:206 final size:206
Alignment explanation
Indices: 72394247--72394802 Score: 916
Period size: 206 Copynumber: 2.7 Consensus size: 206
72394237 GTAGATCTGG
*
72394247 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCT
* *
72394312 GATTTGGCTTTCATGTGCTTATGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * *
72394377 AGAGCATATCGAAGTTTGGCGTCTCCATATTTGACAGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCATCTCCATATTCGACAGAGGGCAGACACATAGCAGATCTAACCTT
72394442 CAGATGATTAGA
195 CAGATGATTAGA
*
72394454 CTGAAGCAGATCCAAGATGATTTGGCATCCTTTTGTTTACAAGGAACAAATCGAA-ATCATAGCT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA-CATAGCT
* * *
72394518 GATTTAGCTTTCACGTGCTTATGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTATATTGTCAG
65 GATTTGGCTTTCACGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
72394583 AGAACAAATCGAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCATCTCCATATTCGACAGAGGGCAGACACATAGCAGATCTAACCTT
72394648 CAGATGATTAGA
195 CAGATGATTAGA
* * *
72394660 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
* * * *
72394725 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTATGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
72394790 GAACAAATCGAAG
131 GAACAAATCGAAG
72394803 AAGCAGATTT
Statistics
Matches: 324, Mismatches: 23, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
205 1 0.00
206 315 0.97
207 8 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTATGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGGCATCTCCATATTCGACAGAGGGCAGACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:72401414 original size:6 final size:6
Alignment explanation
Indices: 72401393--72401564 Score: 111
Period size: 6 Copynumber: 27.8 Consensus size: 6
72401383 TATTAGAACT
* * * *
72401393 AGAATC AAAATG AGAATC AGAATC AG-GTGAC AGAATC AAAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * * * *
72401442 AGAATC AAAATT AGGTAA-C AGAATC AAAATC AGTATT AGGTAA-C AGAATC
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * *
72401492 AGAATC AGAACC AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
72401541 AGGTAA-C AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
72401565 ATGAATGCAA
Statistics
Matches: 127, Mismatches: 24, Indels: 30
0.70 0.13 0.17
Matches are distributed among these distances:
5 9 0.07
6 100 0.79
7 11 0.09
8 7 0.06
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:72401436 original size:37 final size:37
Alignment explanation
Indices: 72401395--72401473 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
72401385 TTAGAACTAG
* * *
72401395 AATCAAAATGAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAAAATCAGAATCAAAATCAGGTAACAGAATCAA
* *
72401432 AATCAGAATCAGAATCAAAATTAGGTAACAGAATCAA
1 AATCAAAATCAGAATCAAAATCAGGTAACAGAATCAA
72401469 AATCA
1 AATCA
72401474 GTATTAGGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.53, C:0.14, G:0.15, T:0.18
Consensus pattern (37 bp):
AATCAAAATCAGAATCAAAATCAGGTAACAGAATCAA
Found at i:72401474 original size:37 final size:37
Alignment explanation
Indices: 72401393--72401564 Score: 102
Period size: 37 Copynumber: 4.5 Consensus size: 37
72401383 TATTAGAACT
* * * *
72401393 AGAATCAAAATGAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATTAGGTAACAGAATC
* *
72401430 AAAATCAGAATCAGAATCAAAATTAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGAATTAGGTAACAGAATC
* *
72401467 AAAATCAGTATTAGGTAACAGAATCAGAATCA-G-AACCAGAATC
1 AGAATCAG-A--A--T--CAGAATCAGAATTAGGTAA-CAGAATC
* * *
72401510 AGAATTAGGTAA-CAGAATCAGAATCA-GTATCAGGTAA-C
1 AGAATCA-G-AATCAGAATCAGAATTAGGTAACA-G-AATC
72401548 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
72401565 ATGAATGCAA
Statistics
Matches: 110, Mismatches: 12, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
36 2 0.02
37 63 0.57
38 10 0.09
39 2 0.02
40 1 0.01
42 4 0.04
43 13 0.12
44 15 0.14
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATTAGGTAACAGAATC
Found at i:72401488 original size:62 final size:62
Alignment explanation
Indices: 72401407--72401564 Score: 253
Period size: 62 Copynumber: 2.5 Consensus size: 62
72401397 TCAAAATGAG
* * *
72401407 AATCAGAATCAGGTGACAGAATCAAAATCAGAATCAGAATCAAAATTAGGTAACAGAATCAA
1 AATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAAAATTAGGTAACAGAATCAA
* * * *
72401469 AATCAGTATTAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAGAATCAG
1 AATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAAAATTAGGTAACAGAATCAA
72401531 AATCAGTATCAGGTAACAGAATCAGAATCAGAAT
1 AATCAGTATCAGGTAACAGAATCAGAATCAGAAT
72401565 ATGAATGCAA
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 87 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (62 bp):
AATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCAAAATTAGGTAACAGAATCAA
Found at i:72401499 original size:25 final size:25
Alignment explanation
Indices: 72401435--72401501 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
72401425 GAATCAAAAT
*
72401435 CAGAATCAGAATCAAAATTAGGTAA
1 CAGAATCAGAATCAGAATTAGGTAA
* *
72401460 CAGAATCAAAATCAGTATTAGGTAA
1 CAGAATCAGAATCAGAATTAGGTAA
72401485 CAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGAA
72401502 CCAGAATCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTAA
Found at i:72401531 original size:25 final size:25
Alignment explanation
Indices: 72401485--72401564 Score: 110
Period size: 25 Copynumber: 3.2 Consensus size: 25
72401475 TATTAGGTAA
*
72401485 CAGAATCA-G-AATCAGAACCAGAAT
1 CAGAATCAGGTAA-CAGAATCAGAAT
*
72401509 CAGAATTAGGTAACAGAATCAGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
*
72401534 CAGTATCAGGTAACAGAATCAGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
72401559 CAGAAT
1 CAGAAT
72401565 ATGAATGCAA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
24 7 0.14
25 40 0.82
26 2 0.04
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.17
Consensus pattern (25 bp):
CAGAATCAGGTAACAGAATCAGAAT
Found at i:72401555 original size:19 final size:19
Alignment explanation
Indices: 72401405--72401536 Score: 110
Period size: 19 Copynumber: 6.7 Consensus size: 19
72401395 AATCAAAATG
*
72401405 AGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGGTAAC
*
72401424 AGAATCAAAATCA-G-AATC
1 AGAATCAGAATCAGGTAA-C
* *
72401442 AGAATCAAAATTAGGTAAC
1 AGAATCAGAATCAGGTAAC
*
72401461 AGAATCAAAATCAGTATTAGGTAAC
1 AGAATCAGAATC------AGGTAAC
72401486 AGAATCAGAATCA-G-AACC
1 AGAATCAGAATCAGGTAA-C
*
72401504 AGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGGTAAC
72401523 AGAATCAGAATCAG
1 AGAATCAGAATCAG
72401537 TATCAGGTAA
Statistics
Matches: 94, Mismatches: 7, Indels: 24
0.75 0.06 0.19
Matches are distributed among these distances:
17 3 0.03
18 28 0.30
19 41 0.44
20 4 0.04
25 18 0.19
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.18
Consensus pattern (19 bp):
AGAATCAGAATCAGGTAAC
Found at i:72401731 original size:27 final size:26
Alignment explanation
Indices: 72401684--72401734 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
72401674 CGAGGTTGCC
*
72401684 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
72401710 AGATATATGTGGCGATGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
72401735 TTGCAGCAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:72402009 original size:27 final size:27
Alignment explanation
Indices: 72401979--72402229 Score: 260
Period size: 27 Copynumber: 9.3 Consensus size: 27
72401969 GGGGTAAAAT
* * *
72401979 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
72402006 GGTAATTCTATCTTAC-AGAAGTATTTC
1 GGTAATTTTACCCTACAAG-GGTATTTC
* *
72402033 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
72402060 GGTAATTCTA-CCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
72402086 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
72402113 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
72402140 GGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
72402167 GGT-ATTTCTATCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
72402194 GG-CATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
72402221 GATAATTTT
1 GGTAATTTT
72402230 GTAAATCGAG
Statistics
Matches: 195, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
26 31 0.16
27 158 0.81
28 6 0.03
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:72402095 original size:80 final size:81
Alignment explanation
Indices: 72401979--72402227 Score: 313
Period size: 81 Copynumber: 3.1 Consensus size: 81
72401969 GGGGTAAAAT
* * * * * *
72401979 GGTAATTTTACCCCACAAAGGTATCTCGGTAATTCTATCTTACAGAAGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGAGGTATTTCAGTAATTCTAC
72402044 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * * *
72402060 GGTAATTCTA-CCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTTTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGAGGTATTTCAGTAATTCTAC
*
72402124 CCTACAGGGGTATTTC
66 CCTACAAGGGTATTTC
* * * * * *
72402140 GGTATTTCTACCCTACAGGGGTATTTCGGTATTTCTATCCTACA-AGGGTATTTCGGCATTTCTA
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGA-GGTATTTCAGTAATTCTA
72402204 CCCTACAAGGGTATTTC
65 CCCTACAAGGGTATTTC
*
72402221 GATAATT
1 GGTAATT
72402228 TTGTAAATCG
Statistics
Matches: 142, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
80 69 0.49
81 73 0.51
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGAGGTATTTCAGTAATTCTAC
CCTACAAGGGTATTTC
Found at i:72402241 original size:27 final size:27
Alignment explanation
Indices: 72402211--72402612 Score: 119
Period size: 27 Copynumber: 14.9 Consensus size: 27
72402201 CTACCCTACA
**
72402211 AGGGTATTTCGATAATTTTGTAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*** * * ** *
72402238 AGGGTAAAACGGTAATTCTGTAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
72402265 AGGGTACTTTAG-TAATTTTACAAGTCG
1 AGGGTA-TTTCGATAATTTTACAAATCG
* * **
72402292 AAGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
72402319 AGGGTATTTC-AGTAATTTCACAAATC-
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
72402345 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTCGATAATTTTACAAATCG
* * *
72402372 AGAGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTCGATAATTTTACAAATCG
* * * ** *
72402399 AGGGGTATTTTGGTAATTTTATAAGCCA
1 A-GGGTATTTCGATAATTTTACAAATCG
* *
72402427 AGGGTATTT-TAGTAATTTTACAAA-CC
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * * *
72402453 AGGGGTATTT-TAGTAA-TTTAGTAAACCA
1 A-GGGTATTTCGA-TAATTTTA-CAAATCG
* * *
72402481 AGGGTATTTTGGTAATTTTACAAA-CC
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * *
72402507 AGGGGTATTTTGGTGATTTTATAAA-CTA
1 A-GGGTATTTCGATAATTTTACAAATC-G
* * *
72402535 AGGGTATTT-TAGTAATTTTACAAACCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * * * * *
72402562 AGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTCGATAATTTTACAAATCG
*
72402589 AGGGTATTT-TAGTAATTTTACAAA
1 AGGGTATTTCGA-TAATTTTACAAA
72402613 CCAGGGGTAT
Statistics
Matches: 298, Mismatches: 56, Indels: 42
0.75 0.14 0.11
Matches are distributed among these distances:
26 15 0.05
27 271 0.91
28 12 0.04
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:72402613 original size:27 final size:27
Alignment explanation
Indices: 72402263--72402633 Score: 397
Period size: 27 Copynumber: 13.7 Consensus size: 27
72402253 TTCTGTAAAT
* *
72402263 CAAGGGTACTTTAGTAATTTTACAAGTC
1 CAAGGGTATTTTAGTAATTTTACAA-AC
* * * ***
72402291 GAA-GGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * * *
72402317 CGAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAC
* *
72402344 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
*
72402371 C-AGAGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTAGTAATTTTACAAAC
* * * * *
72402398 TAGGGGTATTTTGGTAATTTTATAAGC
1 CAAGGGTATTTTAGTAATTTTACAAAC
72402425 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* *
72402452 CAGGGGTATTTTAGTAA-TTTAGTAAAC
1 CAAGGGTATTTTAGTAATTTTA-CAAAC
*
72402479 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * * *
72402506 CAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
*
72402533 TAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * *
72402560 CAAGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
72402587 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* *
72402614 CAGGGGTATTTTGGTAATTT
1 CAAGGGTATTTTAGTAATTT
72402634 GGTAAACTAA
Statistics
Matches: 287, Mismatches: 51, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
26 6 0.02
27 274 0.95
28 7 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTACAAAC
Found at i:72402640 original size:27 final size:27
Alignment explanation
Indices: 72402320--72402633 Score: 405
Period size: 27 Copynumber: 11.6 Consensus size: 27
72402310 TACAGGTCGA
** * *
72402320 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
72402347 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
72402374 AGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
72402401 GGGTATTTTGGTAATTTTATAAGCCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
72402428 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
72402455 GGGTATTTTAGTAA-TTTAGTAAACCAA
1 GGGTATTTTGGTAATTTTA-CAAACCAG
72402482 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
72402509 GGGTATTTTGGTGATTTTATAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
72402536 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
72402563 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
72402590 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
72402617 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
72402634 GGTAAACTAA
Statistics
Matches: 249, Mismatches: 36, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
26 4 0.02
27 241 0.97
28 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:72402640 original size:54 final size:54
Alignment explanation
Indices: 72402319--72402633 Score: 481
Period size: 54 Copynumber: 5.8 Consensus size: 54
72402309 TTACAGGTCG
* * * *
72402319 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACC-
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * *
72402372 AGAGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAGCCA
1 AG-GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
*
72402427 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAA-TTTAGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA-TAAACCA
* * *
72402481 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* *
72402535 AGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
72402589 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
72402634 GGTAAACTAA
Statistics
Matches: 238, Mismatches: 20, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
53 6 0.03
54 226 0.95
55 6 0.03
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:72410591 original size:19 final size:19
Alignment explanation
Indices: 72410567--72410605 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
72410557 ATGGAAAATG
72410567 AATAATTGTTGATAGTTTT
1 AATAATTGTTGATAGTTTT
72410586 AATAATTGTTGATAGTTTT
1 AATAATTGTTGATAGTTTT
72410605 A
1 A
72410606 CATGTTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.51
Consensus pattern (19 bp):
AATAATTGTTGATAGTTTT
Found at i:72411278 original size:43 final size:42
Alignment explanation
Indices: 72411159--72411288 Score: 120
Period size: 43 Copynumber: 3.0 Consensus size: 42
72411149 ACATTAGGTT
*
72411159 ATCGATACGTGATTACATGTAAGACCATGTCTGGGACATTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACA-TGGC
* * ** * *
72411202 GTCGTTAAT-CAATTTCATGTAA-AACACTGTCTGGGACAGTGGC
1 ATCGAT-ATGTGATTACATGTAAGACCA-TGTCTGGGACA-TGGC
* * *
72411245 ATCGATATGTGATAACATGTAAGACCATATCTGGGATATGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATGGC
72411287 AT
1 AT
72411289 TGTACGAGCT
Statistics
Matches: 66, Mismatches: 17, Indels: 9
0.72 0.18 0.10
Matches are distributed among these distances:
42 11 0.17
43 51 0.77
44 4 0.06
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (42 bp):
ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATGGC
Found at i:72413757 original size:25 final size:25
Alignment explanation
Indices: 72413719--72413766 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
72413709 CAAGCGAGGC
*
72413719 ATATTAGGAAGCTCATAAAGAGCCT
1 ATATCAGGAAGCTCATAAAGAGCCT
*
72413744 ATATCAGGACGCTCATAAAGAGC
1 ATATCAGGAAGCTCATAAAGAGC
72413767 TGGATTTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (25 bp):
ATATCAGGAAGCTCATAAAGAGCCT
Found at i:72421390 original size:19 final size:19
Alignment explanation
Indices: 72421366--72421404 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
72421356 ATGGAAAATG
72421366 AATAATTGTTGATAGTTTT
1 AATAATTGTTGATAGTTTT
72421385 AATAATTGTTGATAGTTTT
1 AATAATTGTTGATAGTTTT
72421404 A
1 A
72421405 CATGTTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.51
Consensus pattern (19 bp):
AATAATTGTTGATAGTTTT
Found at i:72422077 original size:43 final size:42
Alignment explanation
Indices: 72421958--72422087 Score: 120
Period size: 43 Copynumber: 3.0 Consensus size: 42
72421948 ACATTAGGTT
*
72421958 ATCGATACGTGATTACATGTAAGACCATGTCTGGGACATTGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACA-TGGC
* * ** * *
72422001 GTCGTTAAT-CAATTTCATGTAA-AACACTGTCTGGGACAGTGGC
1 ATCGAT-ATGTGATTACATGTAAGACCA-TGTCTGGGACA-TGGC
* * *
72422044 ATCGATATGTGATAACATGTAAGACCATATCTGGGATATGGC
1 ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATGGC
72422086 AT
1 AT
72422088 TGTACGAGCT
Statistics
Matches: 66, Mismatches: 17, Indels: 9
0.72 0.18 0.10
Matches are distributed among these distances:
42 11 0.17
43 51 0.77
44 4 0.06
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (42 bp):
ATCGATATGTGATTACATGTAAGACCATGTCTGGGACATGGC
Found at i:72424406 original size:63 final size:63
Alignment explanation
Indices: 72424330--72425211 Score: 1755
Period size: 63 Copynumber: 14.0 Consensus size: 63
72424320 GGTACATAAT
*
72424330 CAGGAAGCACTTTCTCGAGCCATATAACAAGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
1 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
72424393 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
1 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
72424456 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
1 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
72424519 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
1 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
72424582 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
1 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
72424645 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
1 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
72424708 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
1 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
72424771 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
1 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
72424834 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
1 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
72424897 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
1 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
72424960 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
1 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
72425023 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
1 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
72425086 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
1 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
72425149 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
1 CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
72425212 TCCGGGCTAA
Statistics
Matches: 818, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 818 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (63 bp):
CAGGAAGCACTTTCTCGAGCCATATAACAGGATGCTCATGTAAGCCATGTAACAGGAAGCTTA
Found at i:72425375 original size:25 final size:25
Alignment explanation
Indices: 72425337--72425384 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
72425327 CAAGCGAGGC
*
72425337 ATATTAGGAAGCTCATAAAGAGCCT
1 ATATCAGGAAGCTCATAAAGAGCCT
*
72425362 ATATCAGGACGCTCATAAAGAGC
1 ATATCAGGAAGCTCATAAAGAGC
72425385 TGGATTTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (25 bp):
ATATCAGGAAGCTCATAAAGAGCCT
Found at i:72430942 original size:46 final size:46
Alignment explanation
Indices: 72430866--72430957 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
72430856 TTATCTATAG
* * *
72430866 ATGGTAGAAAAATATAATTGAGGGTTCGTCAATGGATCCTTAAAAT
1 ATGGTAGAAAAATATAATTAAGAGTCCGTCAATGGATCCTTAAAAT
**
72430912 ATGGTAGAGTAATATAATTAAGAGTCCGTCAATGGATCCTTAAAAT
1 ATGGTAGAAAAATATAATTAAGAGTCCGTCAATGGATCCTTAAAAT
72430958 CCTATAACAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.39, C:0.10, G:0.21, T:0.30
Consensus pattern (46 bp):
ATGGTAGAAAAATATAATTAAGAGTCCGTCAATGGATCCTTAAAAT
Found at i:72436229 original size:27 final size:27
Alignment explanation
Indices: 72436178--72436231 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
72436168 TGTTGGTAAA
* * *
72436178 TATTTGATTCTAATGTTAATAAAATCT
1 TATTTGATTCTAACGTCAAGAAAATCT
*
72436205 TATTTGATTCTAACGTCAAGGAAATCT
1 TATTTGATTCTAACGTCAAGAAAATCT
72436232 AAGAAATAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (27 bp):
TATTTGATTCTAACGTCAAGAAAATCT
Found at i:72461599 original size:48 final size:48
Alignment explanation
Indices: 72461547--72461644 Score: 169
Period size: 48 Copynumber: 2.0 Consensus size: 48
72461537 TACATGAATT
* * *
72461547 CACATATCATCACCGATGCCATGTCCCTGACATGGTCTTACTCTGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
72461595 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
72461643 CA
1 CA
72461645 TTCAGCACGG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.27, C:0.34, G:0.16, T:0.23
Consensus pattern (48 bp):
CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
Found at i:72464267 original size:15 final size:15
Alignment explanation
Indices: 72464219--72464291 Score: 51
Period size: 15 Copynumber: 4.8 Consensus size: 15
72464209 TAAAAATGAT
*
72464219 AAGAAAACCAA-ATA
1 AAGAAATCCAAGATA
* * *
72464233 AATAAGTCCAAGACA
1 AAGAAATCCAAGATA
*
72464248 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
*
72464263 AAGAAACTCCTAAGATTC
1 AAGAAA-TCC-AAGA-TA
72464281 AA-AAATCCAAG
1 AAGAAATCCAAG
72464292 TTACAATACC
Statistics
Matches: 45, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
14 8 0.18
15 21 0.47
16 6 0.13
17 7 0.16
18 3 0.07
ACGTcount: A:0.56, C:0.18, G:0.12, T:0.14
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:72464797 original size:73 final size:73
Alignment explanation
Indices: 72464710--72464861 Score: 286
Period size: 73 Copynumber: 2.1 Consensus size: 73
72464700 TCAAAAAACA
*
72464710 CTGTCAAAATCTGTTCAGCCATAACTGTCACACTCAATGTCTTACCTTTCAAATATTATTCCTTC
1 CTGTCAAAATCTGTTCAACCATAACTGTCACACTCAATGTCTTACCTTTCAAATATTATTCCTTC
72464775 AACTATTT
66 AACTATTT
*
72464783 CTGTCAATATCTGTTCAACCATAACTGTCACACTCAATGTCTTACCTTTCAAATATTATTCCTTC
1 CTGTCAAAATCTGTTCAACCATAACTGTCACACTCAATGTCTTACCTTTCAAATATTATTCCTTC
72464848 AACTATTT
66 AACTATTT
72464856 CTGTCA
1 CTGTCA
72464862 TCACTAATCC
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 77 1.00
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.39
Consensus pattern (73 bp):
CTGTCAAAATCTGTTCAACCATAACTGTCACACTCAATGTCTTACCTTTCAAATATTATTCCTTC
AACTATTT
Found at i:72466838 original size:40 final size:40
Alignment explanation
Indices: 72466692--72467215 Score: 562
Period size: 40 Copynumber: 13.2 Consensus size: 40
72466682 AGACTAAGAT
** * *
72466692 CCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
* * *
72466732 CCGAAGGCATTTATGCTAG-TGATTA-AACCGGACTAAGAT-
1 CCGAAGGCATTTATGCGAGTTG-TTATATCCGGGCTAAG-TC
** * *
72466771 CCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
* * *
72466811 CCGAAGGCATTTATGCTAG-TGATTATATGCGGGCTAAGAC
1 CCGAAGGCATTTATGCGAGTTG-TTATATCCGGGCTAAGTC
* * *
72466851 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
* * *
72466891 CCGAAGGCATTTATGCTAG-TGATTATATGCGGGCTAAGAC
1 CCGAAGGCATTTATGCGAGTTG-TTATATCCGGGCTAAGTC
* * *
72466931 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
* * *
72466971 CCGAAGGCATTTATGCTAG-TGATTATATGCGGGCTAAGAC
1 CCGAAGGCATTTATGCGAGTTG-TTATATCCGGGCTAAGTC
* * *
72467011 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
* * *
72467051 CCGAAGGCATTTATGCTAG-TGATTATATGCGGGCTAAGAC
1 CCGAAGGCATTTATGCGAGTTG-TTATATCCGGGCTAAGTC
* * *
72467091 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
* * *
72467131 CCGAAGGCATTTATGCTAG-TGATTATATGCGGGCTAAGAC
1 CCGAAGGCATTTATGCGAGTTG-TTATATCCGGGCTAAGTC
* *
72467171 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
72467210 CCGAAG
1 CCGAAG
72467216 ATACTTGGGA
Statistics
Matches: 395, Mismatches: 74, Indels: 31
0.79 0.15 0.06
Matches are distributed among these distances:
39 53 0.13
40 332 0.84
41 10 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
Found at i:72466897 original size:80 final size:80
Alignment explanation
Indices: 72466685--72467215 Score: 958
Period size: 80 Copynumber: 6.7 Consensus size: 80
72466675 GATGACCAGA
* *
72466685 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
** *
72466750 GTGATTA-AACCGGA
66 GTGATTATATGCGGG
* *
72466764 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
72466829 GTGATTATATGCGGG
66 GTGATTATATGCGGG
72466844 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
72466909 GTGATTATATGCGGG
66 GTGATTATATGCGGG
72466924 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
72466989 GTGATTATATGCGGG
66 GTGATTATATGCGGG
72467004 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
72467069 GTGATTATATGCGGG
66 GTGATTATATGCGGG
72467084 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
72467149 GTGATTATATGCGGG
66 GTGATTATATGCGGG
* **
72467164 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATCCCGAAG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAG
72467216 ATACTTGGGA
Statistics
Matches: 443, Mismatches: 8, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
79 85 0.19
80 358 0.81
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (80 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTA
GTGATTATATGCGGG
Found at i:72475126 original size:40 final size:40
Alignment explanation
Indices: 72475059--72475183 Score: 146
Period size: 40 Copynumber: 3.1 Consensus size: 40
72475049 AGACTAAGAT
** * *
72475059 CCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
* * *
72475099 CCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGAC
1 CCGAAGGCATTTATGCGAGTTG-TTATATCCGGGCTAAGTC
* *
72475139 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
72475178 CCGAAG
1 CCGAAG
72475184 ATACTTGGGT
Statistics
Matches: 71, Mismatches: 12, Indels: 5
0.81 0.14 0.06
Matches are distributed among these distances:
39 14 0.20
40 55 0.77
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTATGCGAGTTGTTATATCCGGGCTAAGTC
Found at i:72480912 original size:43 final size:43
Alignment explanation
Indices: 72480851--72480970 Score: 163
Period size: 43 Copynumber: 2.8 Consensus size: 43
72480841 TAGGATTTTG
*
72480851 GATATGTGTTCTCGTGTAAGACCACGTCTGGGACATTGGCATC
1 GATATGTGTTCTCGTGTAAGACCACGTCTGGGACAGTGGCATC
*
72480894 GATATGTGTTCTCGTGTAAGACC-CTGTCTAGGACAGTGGCATC
1 GATATGTGTTCTCGTGTAAGACCAC-GTCTGGGACAGTGGCATC
* * *
72480937 GATATGTGATT-ACATGTAAGACCACGACTGGGAC
1 GATATGTG-TTCTCGTGTAAGACCACGTCTGGGAC
72480971 GTTAGCATTG
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
42 1 0.01
43 64 0.94
44 3 0.04
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (43 bp):
GATATGTGTTCTCGTGTAAGACCACGTCTGGGACAGTGGCATC
Found at i:72494194 original size:39 final size:39
Alignment explanation
Indices: 72494150--72494574 Score: 649
Period size: 39 Copynumber: 11.0 Consensus size: 39
72494140 ATTATATTAT
* *
72494150 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
72494189 CAGCACGAAGCCTACGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
72494228 CAACACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
72494267 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
72494306 CAGCACGAAGCCTGCGGGACTTTGGCCCGGA-ATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
72494344 CAGCACAAAGCCTGTGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
72494383 CAGCACGAAGCCTGCGGGACTTTGGCCCGGA-ATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
72494421 CAGCACAAAGCCTGTGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
72494460 CAGCACGAAGCCTGCGGGACTTTGGCCCGGA-ATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
72494498 CAGCACAAAGCCTGTGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
72494537 CAGCACGAAGCCTGCGAGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
72494575 NNNNNNNNNN
Statistics
Matches: 348, Mismatches: 35, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
38 102 0.29
39 246 0.71
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:72494383 original size:77 final size:77
Alignment explanation
Indices: 72494150--72494567 Score: 701
Period size: 77 Copynumber: 5.4 Consensus size: 77
72494140 ATTATATTAT
* ** * * ** *
72494150 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTACGGGACTTTGGC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGA-ATATTTCCAGCACAAAGCCTGTGGGACTTTAGC
72494215 CCGGATACATTTC
65 CCGGATACATTTC
* * *
72494228 CAACACGAAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCACGAAGCCTGCGGGACTTTAGC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGA-ATATTTCCAGCACAAAGCCTGTGGGACTTTAGC
72494293 CCGGATACATTTC
65 CCGGATACATTTC
72494306 CAGCACGAAGCCTGCGGGACTTTGGCCCGGAATATTTCCAGCACAAAGCCTGTGGGACTTTAGCC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGAATATTTCCAGCACAAAGCCTGTGGGACTTTAGCC
72494371 CGGATACATTTC
66 CGGATACATTTC
72494383 CAGCACGAAGCCTGCGGGACTTTGGCCCGGAATATTTCCAGCACAAAGCCTGTGGGACTTTAGCC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGAATATTTCCAGCACAAAGCCTGTGGGACTTTAGCC
72494448 CGGATACATTTC
66 CGGATACATTTC
72494460 CAGCACGAAGCCTGCGGGACTTTGGCCCGGAATATTTCCAGCACAAAGCCTGTGGGACTTTAGCC
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGAATATTTCCAGCACAAAGCCTGTGGGACTTTAGCC
72494525 CGGATACATTTC
66 CGGATACATTTC
* *
72494537 CAGCACGAAGCCTGCGAGACTTTAGCCCGGA
1 CAGCACGAAGCCTGCGGGACTTTGGCCCGGA
72494568 TACATTTNNN
Statistics
Matches: 328, Mismatches: 12, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
77 227 0.69
78 101 0.31
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (77 bp):
CAGCACGAAGCCTGCGGGACTTTGGCCCGGAATATTTCCAGCACAAAGCCTGTGGGACTTTAGCC
CGGATACATTTC
Found at i:72500092 original size:50 final size:49
Alignment explanation
Indices: 72499972--72500160 Score: 218
Period size: 50 Copynumber: 3.8 Consensus size: 49
72499962 TAGCCAAAGC
* * * * *
72499972 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
72500021 TAT-TCGGTACACGTAGTAGCCTGTACTTAGTACTACACACGTGACCTAAC
1 TATCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * *
72500071 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * *
72500122 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
72500161 TGCGACCTCA
Statistics
Matches: 118, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
48 1 0.01
49 38 0.32
50 43 0.36
51 36 0.31
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:72500168 original size:101 final size:99
Alignment explanation
Indices: 72499985--72500168 Score: 253
Period size: 101 Copynumber: 1.8 Consensus size: 99
72499975 CTGGTACGCA
* * *
72499985 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATTCGGTACACGTAGTAGCCTGTACTTA
1 TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATTCGGTACACATAGTAGCCTGCACTTA
*
72500050 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * *
72500084 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTA-TCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACATAGTACTACACACGCGA-CCAA-TTATTC-GGTACACATAGTAGCCTGCAC
*
72500148 TTAGTACTACACATGCGACCT
63 TTAGTACTACACACGCGACCT
72500169 CACAATAGAT
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
99 28 0.38
100 5 0.07
101 40 0.55
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACACGCGACCAATTATTCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:72518046 original size:26 final size:26
Alignment explanation
Indices: 72518017--72518067 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
72518007 CACTTACTGC
*
72518017 TACTGGCAGCTATGCTGCGTTATTGT
1 TACTGGCAGCTATGCTGCGATATTGT
*
72518043 TACTGGCAGCTTTGCTGCGATATTG
1 TACTGGCAGCTATGCTGCGATATTG
72518068 GTGTGCTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.16, C:0.20, G:0.27, T:0.37
Consensus pattern (26 bp):
TACTGGCAGCTATGCTGCGATATTGT
Done.