Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 211 of 290
Found at i:72993162 original size:27 final size:26
Alignment explanation
Indices: 72993132--72993191 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
72993122 TGTACTGGTG
*
72993132 GCTTTGCCACATATACTGTTACTAGCA
1 GCTTTGCCACAT-TACTGATACTAGCA
** *
72993159 GCTTTGCTGCATTACTGATACTGGCA
1 GCTTTGCCACATTACTGATACTAGCA
72993185 GCTTTGC
1 GCTTTGC
72993192 TGCGATATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 19 0.66
27 10 0.34
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (26 bp):
GCTTTGCCACATTACTGATACTAGCA
Found at i:72993174 original size:26 final size:26
Alignment explanation
Indices: 72993144--72993224 Score: 101
Period size: 26 Copynumber: 3.1 Consensus size: 26
72993134 TTTGCCACAT
*
72993144 ATACTGTTACTAGCAGCTTTGCTGC-
1 ATACTGTTACTGGCAGCTTTGCTGCG
*
72993169 ATTACTGATACTGGCAGCTTTGCTGCG
1 A-TACTGTTACTGGCAGCTTTGCTGCG
* * *
72993196 ATATTATTACTGGCAGTTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
72993222 ATA
1 ATA
72993225 TTGGTGTGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
25 1 0.02
26 46 0.96
27 1 0.02
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTGCG
Found at i:72994080 original size:15 final size:15
Alignment explanation
Indices: 72994057--72994087 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72994047 TCAAAAATTC
72994057 CAATACAAAACATAT
1 CAATACAAAACATAT
*
72994072 CAATCCAAAACATAT
1 CAATACAAAACATAT
72994087 C
1 C
72994088 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:72996377 original size:46 final size:47
Alignment explanation
Indices: 72996185--72996452 Score: 171
Period size: 46 Copynumber: 5.7 Consensus size: 47
72996175 CACTTGCGTG
* * * * *
72996185 AGCCAGTGTAAGA-CATGTTTGGGACATGC-TCAGCCAC-ATTATGAG
1 AGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGA-GATGAT
* * * **
72996230 AGCCAGTGTAAGACCATGTCCGGGACATGGCATCAGC-ATTGAGACCAGT
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTA-CGAGATGA-T
* * * **
72996279 -GCTAGTGTAA-AACATGTCTGGGACATGCATTGGCCT-CGA-AACAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGCATCGG-CTACGAGATGAT
72996323 AAGCCAGTGTAAGA-CATGTCTGGGACATGCATCGGCTACGAGATGAT
1 -AGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGAT
* * * * * *
72996370 AGTCAGTGTAAGACCATGTCTAGGATAAGGCATCGACT-TGAGATG-T
1 AGCCAGTGTAAGACCATGTCTGGGA-CATGCATCGGCTACGAGATGAT
* *
72996416 GAGCCAGTGTAAGACCGTGTTTGGGACATGGCATCGG
1 -AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGG
72996453 TATCTTACCA
Statistics
Matches: 175, Mismatches: 31, Indels: 32
0.74 0.13 0.13
Matches are distributed among these distances:
44 1 0.01
45 18 0.10
46 65 0.37
47 65 0.37
48 25 0.14
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGAT
Found at i:72996449 original size:47 final size:48
Alignment explanation
Indices: 72996185--72996451 Score: 152
Period size: 47 Copynumber: 5.7 Consensus size: 48
72996175 CACTTGCGTG
* * * *
72996185 AGCCAGTGTAAGA-CATGTTTGGGACAT-GC-TC-AGCCAC-ATTATGAG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTACGA-GATGAT
* * **
72996230 AGCCAGTGTAAGACCATGTCCGGGACATGGCATC-AGC-ATTGAGACCAGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTA-CGAGATGA-T
* * * * **
72996279 -GCTAGTGTAA-AACATGTCTGGGACAT-GCATTGGCCT-CGA-AACAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCA-TCGACTACGAGATGAT
*
72996323 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGAT
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATGAT
* * * * *
72996370 AGTCAGTGTAAGACCATGTCTAGGATAAGGCATCGACT-TGAGATG-T
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATGAT
* *
72996416 GAGCCAGTGTAAGACCGTGTTTGGGACATGGCATCG
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
72996452 GTATCTTACC
Statistics
Matches: 174, Mismatches: 31, Indels: 32
0.73 0.13 0.14
Matches are distributed among these distances:
44 1 0.01
45 20 0.11
46 59 0.34
47 69 0.40
48 24 0.14
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATGAT
Found at i:72998093 original size:23 final size:23
Alignment explanation
Indices: 72998067--72998131 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
72998057 ACAAAAGTCT
**
72998067 TCACAGAATATGCCATAAAGGTA
1 TCACAGAATATGCCATAAAGACA
* ** *
72998090 TCACAAAATACACCATAACGACA
1 TCACAGAATATGCCATAAAGACA
72998113 TCACAGAATATGCCATAAA
1 TCACAGAATATGCCATAAA
72998132 TGCTTCATCG
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.48, C:0.23, G:0.11, T:0.18
Consensus pattern (23 bp):
TCACAGAATATGCCATAAAGACA
Found at i:73007800 original size:27 final size:27
Alignment explanation
Indices: 73007686--73007828 Score: 146
Period size: 27 Copynumber: 5.3 Consensus size: 27
73007676 CCTTATGTGA
* * *
73007686 TAAAATAACCGAAATA-CCCTCATAGGG
1 TAAAATGATCGAAATACCCCT-GTAGGG
* *
73007713 TAAAATGACCGAAATACCCCTATAGGG
1 TAAAATGATCGAAATACCCCTGTAGGG
* *
73007740 TAGAATAATCGAAATACCCCTGTAGGG
1 TAAAATGATCGAAATACCCCTGTAGGG
* *
73007767 TAGAATGATCGAAACACCCCTGTAGGG
1 TAAAATGATCGAAATACCCCTGTAGGG
* * *
73007794 TAAAATGA-CTGTAATACCCCGGTAAGG
1 TAAAATGATC-GAAATACCCCTGTAGGG
73007821 TAAAATGA
1 TAAAATGA
73007829 CAGATTTGTT
Statistics
Matches: 102, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 97 0.95
28 4 0.04
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (27 bp):
TAAAATGATCGAAATACCCCTGTAGGG
Found at i:73007907 original size:23 final size:23
Alignment explanation
Indices: 73007864--73007913 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
73007854 CTATATTTGA
73007864 GCATGCCATGTTATATGTATGTT
1 GCATGCCATGTTATATGTATGTT
73007887 GCAT-CCATGTATAATAT-TATGTT
1 GCATGCCATGT-T-ATATGTATGTT
73007910 GCAT
1 GCAT
73007914 TGCATGTGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (23 bp):
GCATGCCATGTTATATGTATGTT
Found at i:73008195 original size:18 final size:18
Alignment explanation
Indices: 73008172--73008230 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
73008162 CTTCCTTGCA
73008172 TACTGCACTAATTACTGT
1 TACTGCACTAATTACTGT
* * *
73008190 TACTGCATTGATCA-TGGT
1 TACTGCACTAATTACT-GT
73008208 TACTGCACTAATTACTGT
1 TACTGCACTAATTACTGT
73008226 TACTG
1 TACTG
73008231 AAATGGGCTA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
17 1 0.03
18 31 0.94
19 1 0.03
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.39
Consensus pattern (18 bp):
TACTGCACTAATTACTGT
Found at i:73011081 original size:51 final size:51
Alignment explanation
Indices: 73010998--73011109 Score: 138
Period size: 51 Copynumber: 2.2 Consensus size: 51
73010988 AGATGCCCGT
* * *
73010998 TGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTT-CACAAAG
1 TGGCCTGCACATAGTACCACACTTATAGTCAAAGCCACC-TCTTACACAAAG
* * *
73011049 TGGCCTTCACATAGTACCACACTTAT-GATCAAAGCCATCTCTTACACATAG
1 TGGCCTGCACATAGTACCACACTTATAG-TCAAAGCCACCTCTTACACAAAG
73011100 TGGCCTGCAC
1 TGGCCTGCAC
73011110 TTAGCACTAC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
50 5 0.10
51 47 0.90
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (51 bp):
TGGCCTGCACATAGTACCACACTTATAGTCAAAGCCACCTCTTACACAAAG
Found at i:73011129 original size:51 final size:51
Alignment explanation
Indices: 73010998--73011178 Score: 132
Period size: 51 Copynumber: 3.5 Consensus size: 51
73010988 AGATGCCCGT
* * * * * * *
73010998 TGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTT-CACAAAG
1 TGGCCTGCACTTAGTACTACACATGTGA-TCAAAGCCATC-TCTTACACATAG
* * * * *
73011049 TGGCCTTCACATAGTACCACACTTATGATCAAAGCCATCTCTTACACATAG
1 TGGCCTGCACTTAGTACTACACATGTGATCAAAGCCATCTCTTACACATAG
* * * *** *
73011100 TGGCCTGCACTTAGCACTACACATGTGATCGAAGCTATCAAGTACGCATAG
1 TGGCCTGCACTTAGTACTACACATGTGATCAAAGCCATCTCTTACACATAG
* * *
73011151 TAGCCTGCACTTAATACTACACACGTGA
1 TGGCCTGCACTTAGTACTACACATGTGA
73011179 CCTAAAACCA
Statistics
Matches: 106, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
50 4 0.04
51 101 0.95
52 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (51 bp):
TGGCCTGCACTTAGTACTACACATGTGATCAAAGCCATCTCTTACACATAG
Found at i:73025822 original size:56 final size:56
Alignment explanation
Indices: 73025736--73025847 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 56
73025726 AATGCAAAAT
73025736 GGTTTGGCTGTGAGTTTTGAAGGAAGAACTGGAGATCTCGCGTTGATGTGTAGGGA
1 GGTTTGGCTGTGAGTTTTGAAGGAAGAACTGGAGATCTCGCGTTGATGTGTAGGGA
* *
73025792 GGTTTGGCTGTGAGTTTTGAAGGAAGAACTGGAGATTTCGCGTTGTTGTGTAGGGA
1 GGTTTGGCTGTGAGTTTTGAAGGAAGAACTGGAGATCTCGCGTTGATGTGTAGGGA
73025848 AGGCGTTGAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.21, C:0.08, G:0.39, T:0.32
Consensus pattern (56 bp):
GGTTTGGCTGTGAGTTTTGAAGGAAGAACTGGAGATCTCGCGTTGATGTGTAGGGA
Found at i:73031862 original size:13 final size:14
Alignment explanation
Indices: 73031846--73031877 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
73031836 AATTACAAAC
73031846 TAAAATAC-ATGAG
1 TAAAATACAATGAG
73031859 T-AAATACAATGAG
1 TAAAATACAATGAG
73031872 TAAAAT
1 TAAAAT
73031878 TCATATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 6 0.35
13 7 0.41
14 4 0.24
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.25
Consensus pattern (14 bp):
TAAAATACAATGAG
Found at i:73035453 original size:27 final size:26
Alignment explanation
Indices: 73035377--73035496 Score: 152
Period size: 27 Copynumber: 4.6 Consensus size: 26
73035367 TTGGGGCTTT
* **
73035377 ACAAAGGCATTCCTTTCATATTCCGCC
1 ACAAAGGC-TTTCTTTCATATTATGCC
*
73035404 ACAAAGGCTTTCTTTCATGTTATGCC
1 ACAAAGGCTTTCTTTCATATTATGCC
73035430 ACAAAGGCTTTTCTTTCATATTATGCC
1 ACAAAGGC-TTTCTTTCATATTATGCC
* * *
73035457 ACAAATGCTTTCTTTCA-AGTATACC
1 ACAAAGGCTTTCTTTCATATTATGCC
73035482 ACAAAGGCTTTCTTT
1 ACAAAGGCTTTCTTT
73035497 ATTTGTCATG
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
25 20 0.24
26 31 0.37
27 32 0.39
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (26 bp):
ACAAAGGCTTTCTTTCATATTATGCC
Found at i:73035458 original size:53 final size:51
Alignment explanation
Indices: 73035377--73035496 Score: 159
Period size: 53 Copynumber: 2.3 Consensus size: 51
73035367 TTGGGGCTTT
* * * *
73035377 ACAAAGGCATTCCTTTCATATTCCGCCACAAAGGCTTTCTTTCATGTTATGCC
1 ACAAAGGC-TTTCTTTCATATTACGCCACAAAGGCTTTCTTTCAAG-TATACC
* *
73035430 ACAAAGGCTTTTCTTTCATATTATGCCACAAATGCTTTCTTTCAAGTATACC
1 ACAAAGGC-TTTCTTTCATATTACGCCACAAAGGCTTTCTTTCAAGTATACC
73035482 ACAAAGGCTTTCTTT
1 ACAAAGGCTTTCTTT
73035497 ATTTGTCATG
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
51 7 0.12
52 13 0.22
53 40 0.67
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (51 bp):
ACAAAGGCTTTCTTTCATATTACGCCACAAAGGCTTTCTTTCAAGTATACC
Found at i:73039706 original size:22 final size:22
Alignment explanation
Indices: 73039676--73039723 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
73039666 AGCTTACCGT
*
73039676 TTCAACTCG-TATGAGCTTGTTG
1 TTCAACTCGATA-GAGCTTATTG
*
73039698 TTCAGCTCGATAGAGCTTATTG
1 TTCAACTCGATAGAGCTTATTG
73039720 TTCA
1 TTCA
73039724 TCAGCTCAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (22 bp):
TTCAACTCGATAGAGCTTATTG
Found at i:73046426 original size:42 final size:42
Alignment explanation
Indices: 73046355--73046438 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
73046345 GCCTGGGATA
*
73046355 GAGCGTCATCCCCCGCGGCCCGATCATACGGCCCATTCTCAT
1 GAGCGTCATCCCCCACGGCCCGATCATACGGCCCATTCTCAT
* * * *
73046397 GAGCGTCGTCCCCCACGGCTCGATTATACGGCCCATTTTCAT
1 GAGCGTCATCCCCCACGGCCCGATCATACGGCCCATTCTCAT
73046439 CCACCAATGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.17, C:0.39, G:0.21, T:0.23
Consensus pattern (42 bp):
GAGCGTCATCCCCCACGGCCCGATCATACGGCCCATTCTCAT
Found at i:73056162 original size:61 final size:60
Alignment explanation
Indices: 73056066--73056187 Score: 181
Period size: 61 Copynumber: 2.0 Consensus size: 60
73056056 CAGGGAAAGA
* * * *
73056066 ATTTGTAATCTACAGCGATGCGTCCTTGAATGGACTAGGATGTTTGCTTATACAAGAAGG
1 ATTTGTAATCTACAACGATGCATCCTTGAATGGACTACGATGTGTGCTTATACAAGAAGG
* *
73056126 ANTTTGTAATCTACAATGATGCATCCTTGAATGGACTACGATGTGTGCTTATGCAAGAAGG
1 A-TTTGTAATCTACAACGATGCATCCTTGAATGGACTACGATGTGTGCTTATACAAGAAGG
73056187 A
1 A
73056188 AAATTTCTAG
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
60 1 0.02
61 54 0.98
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (60 bp):
ATTTGTAATCTACAACGATGCATCCTTGAATGGACTACGATGTGTGCTTATACAAGAAGG
Found at i:73062486 original size:22 final size:22
Alignment explanation
Indices: 73062460--73062527 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 22
73062450 TCACTGTTTT
73062460 AGCTCG-TATGAGCTTACTATTC
1 AGCTCGATA-GAGCTTACTATTC
73062482 AGCTCGATAGAGCTTACCGT-TTC
1 AGCTCGATAGAGCTTA-C-TATTC
*
73062505 AGCTCAATAGAGCTTACTATTC
1 AGCTCGATAGAGCTTACTATTC
73062527 A
1 A
73062528 TCAGCTTAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
21 1 0.02
22 18 0.44
23 21 0.51
24 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (22 bp):
AGCTCGATAGAGCTTACTATTC
Found at i:73062509 original size:23 final size:23
Alignment explanation
Indices: 73062446--73062521 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
73062436 CAACTCATTG
* * *
73062446 GAGCTCACTGTTTTAGCTCG-TA
1 GAGCTTACCGTTTCAGCTCGATA
73062468 TGAGCTTA-C-TATTCAGCTCGATA
1 -GAGCTTACCGT-TTCAGCTCGATA
*
73062491 GAGCTTACCGTTTCAGCTCAATA
1 GAGCTTACCGTTTCAGCTCGATA
73062514 GAGCTTAC
1 GAGCTTAC
73062522 TATTCATCAG
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
21 1 0.02
22 15 0.33
23 28 0.62
24 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCGATA
Found at i:73075269 original size:30 final size:30
Alignment explanation
Indices: 73075233--73075292 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
73075223 AAAGACTATC
73075233 ACATTCTTTATTACAACTCTGCAAAACTAA
1 ACATTCTTTATTACAACTCTGCAAAACTAA
73075263 ACATTCTTTATTACAACTCTGCAAAACTAA
1 ACATTCTTTATTACAACTCTGCAAAACTAA
73075293 CACAAGGGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.40, C:0.23, G:0.03, T:0.33
Consensus pattern (30 bp):
ACATTCTTTATTACAACTCTGCAAAACTAA
Found at i:73081709 original size:7 final size:7
Alignment explanation
Indices: 73081697--73081729 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
73081687 TTTTTACCCT
73081697 GAATCTA
1 GAATCTA
73081704 GAATCTA
1 GAATCTA
73081711 GAATCTA
1 GAATCTA
73081718 GAATCTA
1 GAATCTA
73081725 GAATC
1 GAATC
73081730 CTGAACCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (7 bp):
GAATCTA
Found at i:73081822 original size:35 final size:33
Alignment explanation
Indices: 73081783--73081858 Score: 84
Period size: 35 Copynumber: 2.3 Consensus size: 33
73081773 AAACCTTTGG
*
73081783 ACCCTAAACATG-ATCCTTAAACCTCAAACCCTTAA
1 ACCCTAAACATGAAT-CTTAAACCCCAAA-CC-TAA
**
73081818 ACCCTAAATTTGAATCTTAAACCCCAAACCTAA
1 ACCCTAAACATGAATCTTAAACCCCAAACCTAA
73081851 ACCC-AAAC
1 ACCCTAAAC
73081859 CCAATCCTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
32 3 0.08
33 7 0.19
34 2 0.06
35 22 0.61
36 2 0.06
ACGTcount: A:0.42, C:0.34, G:0.03, T:0.21
Consensus pattern (33 bp):
ACCCTAAACATGAATCTTAAACCCCAAACCTAA
Found at i:73081937 original size:21 final size:21
Alignment explanation
Indices: 73081913--73081952 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
73081903 AACCCAAACC
* *
73081913 CAAACCCTGAACCTTAAATCT
1 CAAAACCTGAACCCTAAATCT
*
73081934 CAAAACTTGAACCCTAAAT
1 CAAAACCTGAACCCTAAAT
73081953 TTGCAACTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.30, G:0.05, T:0.23
Consensus pattern (21 bp):
CAAAACCTGAACCCTAAATCT
Found at i:73081950 original size:53 final size:53
Alignment explanation
Indices: 73081836--73081951 Score: 169
Period size: 53 Copynumber: 2.2 Consensus size: 53
73081826 TTTGAATCTT
* * *
73081836 AAACCCCAAACCTAAACCCAAACCCAATCCTTGAACCTTAAATCTCAAAACTC
1 AAACCCTAAACCTAAACCCAAACCCAAACCCTGAACCTTAAATCTCAAAACTC
* * *
73081889 AAATCCTAAACTTAAACCCAAACCCAAACCCTGAACCTTAAATCTCAAAACTT
1 AAACCCTAAACCTAAACCCAAACCCAAACCCTGAACCTTAAATCTCAAAACTC
*
73081942 GAACCCTAAA
1 AAACCCTAAA
73081952 TTTGCAACTA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.45, C:0.34, G:0.03, T:0.18
Consensus pattern (53 bp):
AAACCCTAAACCTAAACCCAAACCCAAACCCTGAACCTTAAATCTCAAAACTC
Found at i:73086195 original size:11 final size:11
Alignment explanation
Indices: 73086179--73086209 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
73086169 CCCCCCCCCA
73086179 AAAAAAAAAAG
1 AAAAAAAAAAG
73086190 AAAAAAAAAAG
1 AAAAAAAAAAG
73086201 AAAAGAAAA
1 AAAA-AAAA
73086210 CATGACAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.79
12 4 0.21
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:73086199 original size:16 final size:16
Alignment explanation
Indices: 73086178--73086209 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73086168 CCCCCCCCCC
73086178 AAAAAAAAAAAGAAAA
1 AAAAAAAAAAAGAAAA
*
73086194 AAAAAAGAAAAGAAAA
1 AAAAAAAAAAAGAAAA
73086210 CATGACAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAGAAAA
Found at i:73087476 original size:13 final size:13
Alignment explanation
Indices: 73087460--73087517 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
73087450 ATTATAAGAA
73087460 TTAATTGTATAAT
1 TTAATTGTATAAT
*
73087473 TTAATT-TAAAAT
1 TTAATTGTATAAT
*
73087485 TT--TTGTTATAAGAA
1 TTAATTG-TAT-A-AT
73087499 TTAATTGTATAAT
1 TTAATTGTATAAT
73087512 TTAATT
1 TTAATT
73087518 TAAAATAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
10 2 0.06
12 9 0.26
13 14 0.40
14 4 0.11
15 3 0.09
16 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (13 bp):
TTAATTGTATAAT
Found at i:73090350 original size:47 final size:47
Alignment explanation
Indices: 73090281--73091138 Score: 1707
Period size: 47 Copynumber: 18.3 Consensus size: 47
73090271 TTGAATTTAA
*
73090281 TTTTTTTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090328 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090375 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090422 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090469 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090516 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090563 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090610 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090657 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090704 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090751 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090798 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090845 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090892 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090939 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73090986 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73091033 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73091080 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
1 TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
73091127 TTTTATTATGTT
1 TTTTATTATGTT
73091139 CTCGTACTAT
Statistics
Matches: 810, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 810 1.00
ACGTcount: A:0.36, C:0.08, G:0.04, T:0.52
Consensus pattern (47 bp):
TTTTATTATGTTATTTTATTTTATCATTATGAAAATATTAAAAACCC
Found at i:73092945 original size:41 final size:41
Alignment explanation
Indices: 73092877--73092954 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 41
73092867 TACAAGGGTT
73092877 TTCACACGGCCTGGAACATGCCAGTGTCCCTAGCCCGTGTCC
1 TTCACACGGCCTGGAACATGCCAGTGT-CCTAGCCCGTGTCC
*
73092919 TTCACACGGCCAT-G-ACATGCCCGTGTCCTAGCCCGT
1 TTCACACGGCC-TGGAACATGCCAGTGTCCTAGCCCGT
73092955 TAGCAAAAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
40 10 0.29
41 11 0.32
42 12 0.35
43 1 0.03
ACGTcount: A:0.17, C:0.38, G:0.23, T:0.22
Consensus pattern (41 bp):
TTCACACGGCCTGGAACATGCCAGTGTCCTAGCCCGTGTCC
Found at i:73103574 original size:70 final size:70
Alignment explanation
Indices: 73103491--73103631 Score: 255
Period size: 70 Copynumber: 2.0 Consensus size: 70
73103481 TATTTTAGTA
*
73103491 ATGCTAACCATCTTCACTGTCACAAATTGAAGTTTTTTTGAGTCATCAGATATTTCAAAATTTTA
1 ATGCTAACCATCTTCACTGTCACAAATTGAAGTCTTTTTGAGTCATCAGATATTTCAAAATTTTA
73103556 TGGTC
66 TGGTC
* *
73103561 ATGCTAACCATCTTCGCTGTCACAAATTGAAGTCTTTTTGAGTCATCAGATATTTCAAACTTTTA
1 ATGCTAACCATCTTCACTGTCACAAATTGAAGTCTTTTTGAGTCATCAGATATTTCAAAATTTTA
73103626 TGGTC
66 TGGTC
73103631 A
1 A
73103632 GTATAAATAT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.39
Consensus pattern (70 bp):
ATGCTAACCATCTTCACTGTCACAAATTGAAGTCTTTTTGAGTCATCAGATATTTCAAAATTTTA
TGGTC
Found at i:73112996 original size:64 final size:64
Alignment explanation
Indices: 73112895--73113018 Score: 203
Period size: 64 Copynumber: 1.9 Consensus size: 64
73112885 CCCAAGTTCG
*
73112895 ACACTTTTAAAGTAAACAATACCCGCCTAAAACCTTATTTTAATGAGATTCATAGCAGGAATCA
1 ACACTTTTAAAGCAAACAATACCCGCCTAAAACCTTATTTTAATGAGATTCATAGCAGGAATCA
* * * *
73112959 ACACTTTTAAGGCAAACAATACCCGTCTAAAACCTTATTTTGATGAGATTCATAGTAGGA
1 ACACTTTTAAAGCAAACAATACCCGCCTAAAACCTTATTTTAATGAGATTCATAGCAGGA
73113019 TGAGGAGTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (64 bp):
ACACTTTTAAAGCAAACAATACCCGCCTAAAACCTTATTTTAATGAGATTCATAGCAGGAATCA
Found at i:73116539 original size:26 final size:26
Alignment explanation
Indices: 73116503--73116560 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
73116493 ATACGAGCCA
* * *
73116503 TAATTAGGAAGTTCACAAAGAACTTT
1 TAATCAGGAAGGTCACAAAGAACCTT
*
73116529 TAATCAGGAAGGTCACAAAGAGCCTT
1 TAATCAGGAAGGTCACAAAGAACCTT
73116555 TAATCA
1 TAATCA
73116561 AGAGCTCCGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.26
Consensus pattern (26 bp):
TAATCAGGAAGGTCACAAAGAACCTT
Found at i:73116681 original size:65 final size:65
Alignment explanation
Indices: 73116606--73116820 Score: 247
Period size: 65 Copynumber: 3.3 Consensus size: 65
73116596 CAAGCCATAT
* * * *
73116606 CAGGAGGCTCACAAAGAGCTGCATTTGTGTCTACAACATATGTAGAATCACAACCGATCATATAA
1 CAGGACGCTCACAAAGAGCTGCATTTGTGTCTGCAATATATGCAGAATCACAACCGATCATATAA
* * * * * *
73116671 CAGGATGCTCACAAATAACT--ATGTCTGTGTCTGTAATATATGCAGGATCACAACTGATCATAT
1 CAGGACGCTCACAAAGAGCTGCAT-T-TGTGTCTGCAATATATGCAGAATCACAACCGATCATAT
73116734 AA
64 AA
* * *
73116736 CAGGACGCTCACAAAGAGTTGCGTTTGTGTCCGCAATATATGCA-AGATCACAACCGATCATATA
1 CAGGACGCTCACAAAGAGCTGCATTTGTGTCTGCAATATATGCAGA-ATCACAACCGATCATATA
73116800 A
65 A
* *
73116801 CAGGACACTCATAAAGAGCT
1 CAGGACGCTCACAAAGAGCT
73116821 ACTGTAGTCC
Statistics
Matches: 124, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
63 2 0.02
64 1 0.01
65 119 0.96
66 1 0.01
67 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (65 bp):
CAGGACGCTCACAAAGAGCTGCATTTGTGTCTGCAATATATGCAGAATCACAACCGATCATATAA
Found at i:73120597 original size:40 final size:40
Alignment explanation
Indices: 73120540--73120626 Score: 147
Period size: 40 Copynumber: 2.2 Consensus size: 40
73120530 AGCTTTACCA
*
73120540 CAATAAGGTTCTCCAATATTACAGGGTATAGTCTCATACT
1 CAATAAGATTCTCCAATATTACAGGGTATAGTCTCATACT
*
73120580 CAATAAGATTCTTCAATATTACAGGGTATAGTCTCATACT
1 CAATAAGATTCTCCAATATTACAGGGTATAGTCTCATACT
*
73120620 CACTAAG
1 CAATAAG
73120627 CTTTACCACA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (40 bp):
CAATAAGATTCTCCAATATTACAGGGTATAGTCTCATACT
Found at i:73123538 original size:3 final size:3
Alignment explanation
Indices: 73123530--73123561 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
73123520 ATTAATGGCT
73123530 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
73123562 TCCACTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:73127428 original size:17 final size:17
Alignment explanation
Indices: 73127396--73127441 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
73127386 TTTATGCAAA
*
73127396 CATAAACAT-TTAAGTT
1 CATAAACATAATAAGTT
*
73127412 CATAAACCTAATAAGTT
1 CATAAACATAATAAGTT
73127429 CATAAACATAATA
1 CATAAACATAATA
73127442 TATAATCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 8 0.31
17 18 0.69
ACGTcount: A:0.50, C:0.15, G:0.04, T:0.30
Consensus pattern (17 bp):
CATAAACATAATAAGTT
Found at i:73129670 original size:14 final size:14
Alignment explanation
Indices: 73129651--73129688 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
73129641 AAAAAAATTA
*
73129651 ACTTAATTAACCAT
1 ACTTAATTAACCAC
73129665 ACTTAATTAACCAC
1 ACTTAATTAACCAC
73129679 ACTTAATTAA
1 ACTTAATTAA
73129689 ATTTAATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (14 bp):
ACTTAATTAACCAC
Found at i:73129895 original size:23 final size:25
Alignment explanation
Indices: 73129849--73129897 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
73129839 TACCTTAAGT
73129849 AACTATCAATTCAATAAAATTACTA
1 AACTATCAATTCAATAAAATTACTA
* *
73129874 AACTAT-AATTCCAT-ATATTACTA
1 AACTATCAATTCAATAAAATTACTA
73129897 A
1 A
73129898 TTTAGACTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 9 0.41
24 7 0.32
25 6 0.27
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (25 bp):
AACTATCAATTCAATAAAATTACTA
Found at i:73130201 original size:3 final size:3
Alignment explanation
Indices: 73130188--73130253 Score: 98
Period size: 3 Copynumber: 22.0 Consensus size: 3
73130178 CTATTTCTGA
73130188 CTT CTTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
* *
73130234 ATT CTT ATT CTT CTT -TT CTT
1 CTT CTT CTT CTT CTT CTT CTT
73130254 TTCAATTGCA
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.04
3 52 0.91
4 3 0.05
ACGTcount: A:0.03, C:0.29, G:0.00, T:0.68
Consensus pattern (3 bp):
CTT
Found at i:73130935 original size:28 final size:28
Alignment explanation
Indices: 73130902--73130969 Score: 79
Period size: 26 Copynumber: 2.5 Consensus size: 28
73130892 ATATTTTTTA
* * * *
73130902 TTTATAATTTTTAATATATATTTGAATT
1 TTTATAATTTTTAAAAAATATATAAATT
73130930 TTTAT-A-TTTTAAAAAATATATAAATT
1 TTTATAATTTTTAAAAAATATATAAATT
73130956 TTTA-AATTTTTAAA
1 TTTATAATTTTTAAA
73130970 TAATGATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
26 21 0.62
27 8 0.24
28 5 0.15
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (28 bp):
TTTATAATTTTTAAAAAATATATAAATT
Found at i:73139175 original size:21 final size:18
Alignment explanation
Indices: 73139122--73139176 Score: 56
Period size: 21 Copynumber: 2.8 Consensus size: 18
73139112 TTCATATTTT
73139122 TAAAAAAATTATAAAAATA
1 TAAAAAAATTA-AAAAATA
*
73139141 TAAAAGAATCTAAAGAATATA
1 TAAAAAAAT-TAAA-AA-ATA
73139162 TAAAGAAAATTAAAA
1 TAAA-AAAATTAAAA
73139177 TTTTAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
19 10 0.33
20 5 0.17
21 11 0.37
22 4 0.13
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (18 bp):
TAAAAAAATTAAAAAATA
Found at i:73142287 original size:26 final size:27
Alignment explanation
Indices: 73142258--73142308 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
73142248 TATAACTATT
*
73142258 AAATATTTATAATTAGT-ATTTTAAAA
1 AAATATTTATAATTAATGATTTTAAAA
*
73142284 AAATATTTTTAATTAATGATTTTAA
1 AAATATTTATAATTAATGATTTTAA
73142309 CACATTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (27 bp):
AAATATTTATAATTAATGATTTTAAAA
Found at i:73148419 original size:146 final size:147
Alignment explanation
Indices: 73148154--73148446 Score: 446
Period size: 146 Copynumber: 2.0 Consensus size: 147
73148144 CAAAGATCAC
* * * *
73148154 CTCTCTCTCTCTCGCTGGGGGAGAGTGTTAGTATTTTATTGTTGACTAGTCAGGAACATTTTCTT
1 CTCTCTCTCTCTCGCAGGAGGAGAGTGTTAGGATTTTATTGTTGACTAATCAGGAACATTTTCTT
* *
73148219 TTGTTGTCTAAATGTTTCTTGGTCACTCTGCACTAACCTTTAATCTTCACTATATCTAGGTAACA
66 TTGTTGTCTAAATGCTTCTTGATCACTCTGCACTAACCTTTAATCTTCACTATATCTAGGTAACA
**
73148284 AGTTTGGAGACCAACCT
131 AGTCAGGAGACCAACCT
* * * *
73148301 CTCTCTCTCTGTGGCAGGAGGAGAGTGTTAGGATTTTGGTT-TTGAGTAATCAGGAACA-TTTCT
1 CTCTCTCTCTCTCGCAGGAGGAGAGTGTTAGGATTTT-ATTGTTGACTAATCAGGAACATTTTCT
*
73148364 TTTGTTGTCTAAATGCTTCTTGATCACTTTGCACTAACCTTTAATCTTCACTATATCTAGGTAAC
65 TTTGTTGTCTAAATGCTTCTTGATCACTCTGCACTAACCTTTAATCTTCACTATATCTAGGTAAC
73148429 AAGTCAGGAGACCAACCT
130 AAGTCAGGAGACCAACCT
73148447 AGTGGCTAGA
Statistics
Matches: 132, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
146 83 0.63
147 47 0.36
148 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (147 bp):
CTCTCTCTCTCTCGCAGGAGGAGAGTGTTAGGATTTTATTGTTGACTAATCAGGAACATTTTCTT
TTGTTGTCTAAATGCTTCTTGATCACTCTGCACTAACCTTTAATCTTCACTATATCTAGGTAACA
AGTCAGGAGACCAACCT
Found at i:73155565 original size:26 final size:27
Alignment explanation
Indices: 73155536--73155586 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
73155526 TAAAGTTCCA
*
73155536 AAATAATTTTAATAATTA-AATTAATT
1 AAATAATTTTAAAAATTATAATTAATT
73155562 AAATAATTTTAAAAATTATAATTAA
1 AAATAATTTTAAAAATTATAATTAA
73155587 ATATTTTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (27 bp):
AAATAATTTTAAAAATTATAATTAATT
Found at i:73155587 original size:23 final size:25
Alignment explanation
Indices: 73155536--73155595 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 25
73155526 TAAAGTTCCA
*
73155536 AAATAATTTTAATAATTAAATTAATT
1 AAATAATTTTAAAAATT-AATTAATT
73155562 AAATAATTTTAAAAATT-A-TAATT
1 AAATAATTTTAAAAATTAATTAATT
*
73155585 AAATATTTTTA
1 AAATAATTTTA
73155596 CACAATCTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 15 0.47
24 1 0.03
26 16 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
AAATAATTTTAAAAATTAATTAATT
Found at i:73158422 original size:33 final size:33
Alignment explanation
Indices: 73158384--73158448 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
73158374 ACCAAATGAA
73158384 GGGCTAAATTTGAAAGCTCCCAAACCCTATTTT
1 GGGCTAAATTTGAAAGCTCCCAAACCCTATTTT
73158417 GGGCTAAATTTGAAAGCTCCCAAACCCTATTT
1 GGGCTAAATTTGAAAGCTCCCAAACCCTATTT
73158449 CTTTTTTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (33 bp):
GGGCTAAATTTGAAAGCTCCCAAACCCTATTTT
Found at i:73160471 original size:13 final size:13
Alignment explanation
Indices: 73160455--73160480 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73160445 TTTAAACCGA
73160455 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
73160468 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
73160481 GTTGCCAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:73161050 original size:5 final size:5
Alignment explanation
Indices: 73161040--73161925 Score: 1666
Period size: 5 Copynumber: 177.2 Consensus size: 5
73161030 AAGTATAACT
* *
73161040 TATCA TATCA TAATGA -ATCA TAACA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA T-ATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161090 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161140 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161190 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161240 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161290 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161340 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161390 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161440 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161490 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161540 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161590 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161640 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161690 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161740 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
73161790 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
* *
73161840 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCG TAACA
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA TATCA
* * ** * *
73161890 TAGCA TAGCA TAGGA TAGCA TATCA AATCA TATCA T
1 TATCA TATCA TATCA TATCA TATCA TATCA TATCA T
73161926 GTCCTACCCC
Statistics
Matches: 866, Mismatches: 13, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
4 3 0.00
5 860 0.99
6 3 0.00
ACGTcount: A:0.40, C:0.20, G:0.01, T:0.39
Consensus pattern (5 bp):
TATCA
Found at i:73165689 original size:29 final size:30
Alignment explanation
Indices: 73165625--73165690 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
73165615 AAAATGAATG
* * * *
73165625 TTAGTGACTGATTTGTCATTTTTCTAAATT
1 TTAGTGACTGAGTTGTAACTTTTCTAAAGT
73165655 TTAGTGACTGAGTTGTAACTTTT-TAAAGT
1 TTAGTGACTGAGTTGTAACTTTTCTAAAGT
73165684 TTAGTGA
1 TTAGTGA
73165691 TTGTTTTATT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 12 0.38
30 20 0.62
ACGTcount: A:0.26, C:0.08, G:0.18, T:0.48
Consensus pattern (30 bp):
TTAGTGACTGAGTTGTAACTTTTCTAAAGT
Found at i:73171203 original size:27 final size:26
Alignment explanation
Indices: 73171168--73171333 Score: 197
Period size: 27 Copynumber: 6.2 Consensus size: 26
73171158 AGCATGGCTG
* *
73171168 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
73171194 CCAGATACAGATAATCGTGGCAAATCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
73171222 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
73171249 CCAGATCAGATAATCATGGCATAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
73171276 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
73171303 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
73171330 CCAG
1 CCAG
73171334 GACGCTTCCT
Statistics
Matches: 120, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
26 8 0.07
27 95 0.79
28 17 0.14
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:73171227 original size:54 final size:54
Alignment explanation
Indices: 73171168--73171333 Score: 262
Period size: 54 Copynumber: 3.1 Consensus size: 54
73171158 AGCATGGCTG
* * * *
73171168 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAAATCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCATAGCCA
*
73171222 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCATGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
*
73171276 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
73171330 CCAG
1 CCAG
73171334 GACGCTTCCT
Statistics
Matches: 104, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
54 86 0.83
55 18 0.17
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
Found at i:73178305 original size:27 final size:27
Alignment explanation
Indices: 73178267--73178432 Score: 198
Period size: 27 Copynumber: 6.1 Consensus size: 27
73178257 AGCATGGCTG
* *
73178267 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
73178293 CCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
73178321 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
73178348 CCAGAT-CAGATAATCGTGGCATAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
73178375 CCAGA-ACAGATATATGTGGTAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
73178402 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
73178429 CCAG
1 CCAG
73178433 GACGCTTCCT
Statistics
Matches: 122, Mismatches: 9, Indels: 17
0.82 0.06 0.11
Matches are distributed among these distances:
26 8 0.07
27 95 0.78
28 19 0.16
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:73178331 original size:54 final size:54
Alignment explanation
Indices: 73178267--73178432 Score: 262
Period size: 54 Copynumber: 3.1 Consensus size: 54
73178257 AGCATGGCTG
* * * *
73178267 CCAGAACAGATA-ATGTGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCATAGCCA
73178321 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
* *
73178375 CCAGAACAGATATATGTGGTAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
73178429 CCAG
1 CCAG
73178433 GACGCTTCCT
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
54 87 0.83
55 18 0.17
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
Found at i:73184453 original size:18 final size:18
Alignment explanation
Indices: 73184432--73184492 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
73184422 AGTTTGGAAA
73184432 ATTAATACAGTTCGCCAT
1 ATTAATACAGTTCGCCAT
** * *
73184450 ATTAATACAAATCACCAA
1 ATTAATACAGTTCGCCAT
*
73184468 ATTAACACAGTTCGCCAT
1 ATTAATACAGTTCGCCAT
*
73184486 ACTAATA
1 ATTAATA
73184493 TAATTCACCA
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.28
Consensus pattern (18 bp):
ATTAATACAGTTCGCCAT
Found at i:73184472 original size:36 final size:36
Alignment explanation
Indices: 73184430--73184503 Score: 112
Period size: 36 Copynumber: 2.1 Consensus size: 36
73184420 ACAGTTTGGA
* *
73184430 AAATTAATACAGTTCGCCATATTAATACAAATCACC
1 AAATTAACACAGTTCGCCATACTAATACAAATCACC
* *
73184466 AAATTAACACAGTTCGCCATACTAATATAATTCACC
1 AAATTAACACAGTTCGCCATACTAATACAAATCACC
73184502 AA
1 AA
73184504 GTTAGCATGG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.45, C:0.23, G:0.05, T:0.27
Consensus pattern (36 bp):
AAATTAACACAGTTCGCCATACTAATACAAATCACC
Found at i:73184709 original size:15 final size:16
Alignment explanation
Indices: 73184677--73184709 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
73184667 AATTATCAAT
73184677 AAAATTCATATGTTATA
1 AAAATTCATA-GTTATA
73184694 AAAATTCATA-TTATA
1 AAAATTCATAGTTATA
73184709 A
1 A
73184710 TATTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
17 10 0.62
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (16 bp):
AAAATTCATAGTTATA
Found at i:73186691 original size:7 final size:7
Alignment explanation
Indices: 73186679--73186720 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
73186669 TGTACATCTG
73186679 ATCTGTT
1 ATCTGTT
73186686 ATCTGTT
1 ATCTGTT
*
73186693 ATCTGAT
1 ATCTGTT
*
73186700 -TCTGAT
1 ATCTGTT
73186706 ATCTGTT
1 ATCTGTT
73186713 -TCTGTT
1 ATCTGTT
73186719 AT
1 AT
73186721 GGACTTAGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 12 0.39
7 19 0.61
ACGTcount: A:0.17, C:0.14, G:0.14, T:0.55
Consensus pattern (7 bp):
ATCTGTT
Found at i:73186703 original size:13 final size:13
Alignment explanation
Indices: 73186687--73186720 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
73186677 TGATCTGTTA
73186687 TCTGTTATCTGAT
1 TCTGTTATCTGAT
* *
73186700 TCTGATATCTGTT
1 TCTGTTATCTGAT
73186713 TCTGTTAT
1 TCTGTTAT
73186721 GGACTTAGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.56
Consensus pattern (13 bp):
TCTGTTATCTGAT
Found at i:73186703 original size:20 final size:19
Alignment explanation
Indices: 73186674--73186716 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
73186664 GATTCTGTAC
*
73186674 ATCTGATCTGTTATCTGTT
1 ATCTGATCTGATATCTGTT
73186693 ATCTGATTCTGATATCTGTT
1 ATCTGA-TCTGATATCTGTT
73186713 -TCTG
1 ATCTG
73186717 TTATGGACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.51
Consensus pattern (19 bp):
ATCTGATCTGATATCTGTT
Found at i:73189753 original size:23 final size:24
Alignment explanation
Indices: 73189723--73189778 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
73189713 ATTATTTATT
73189723 AAATAATATATT-TTA-TAATTTC
1 AAATAATATATTGTTACTAATTTC
73189745 AAATAAATATATTGTTACTAA-TT-
1 AAAT-AATATATTGTTACTAATTTC
73189768 AAATAAT-TATT
1 AAATAATATATT
73189779 AGTGTGATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
21 4 0.13
22 7 0.23
23 12 0.39
24 5 0.16
25 3 0.10
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (24 bp):
AAATAATATATTGTTACTAATTTC
Found at i:73190751 original size:18 final size:17
Alignment explanation
Indices: 73190725--73190763 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
73190715 TTTTATAAAA
73190725 TTTTAAATTTTAGAAATT
1 TTTTAAATTTTA-AAATT
* *
73190743 TTTTGAATTTTAAGATT
1 TTTTAAATTTTAAAATT
73190760 TTTT
1 TTTT
73190764 TATTTCAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (17 bp):
TTTTAAATTTTAAAATT
Found at i:73195484 original size:177 final size:177
Alignment explanation
Indices: 73195188--73195644 Score: 655
Period size: 177 Copynumber: 2.6 Consensus size: 177
73195178 ATTCAAGGAA
* * * * *
73195188 ATAAGGCTAATGGCTTAAATCTGCTCCATTGCTGATACATGGAGATAAGATTCACCATCTTCAAT
1 ATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTGACCGTCTTCAAT
* * *
73195253 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAACTCTCAATCTTCTTCCTTGCTACCTCAGG
66 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCTCAATCTGCTTCCTTGCTACCTCAGG
* * *
73195318 AAGATAAAACTTGTATCTTCAACCTGTTCTCTTGCTACCTTAGAGAG
131 AAGATAAAACTTGTATCTTCAACCTGCTCTCTTACTACCTCAGAGAG
*
73195365 ATAAGGCTAGTGGCTAAAATCTGCTCAATTGCCGATACATGGAGATAAGATTGACCGTCTTCAAT
1 ATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTGACCGTCTTCAAT
* *
73195430 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCTCAGTCTGGTTCCTTGCTACCTCAGG
66 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCTCAATCTGCTTCCTTGCTACCTCAGG
* * *
73195495 AAGATAAGACTTGTATCTTCAGCTTGCTCTCTTACTACCTCAGAGAG
131 AAGATAAAACTTGTATCTTCAACCTGCTCTCTTACTACCTCAGAGAG
* * * * ***
73195542 ATAAGGCTAGTGGCTAAAACCTGCTCCATTGCCGATACATAGAGATAAGATTCG-CTGTTTTTGG
1 ATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATT-GACCGTCTTCAA
* * *
73195606 TCTTCTCCACTACTGCTTAGGGAGATAAGACCTGTAATT
65 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATT
73195645 TCCACTCTAC
Statistics
Matches: 251, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
177 250 1.00
178 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (177 bp):
ATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTGACCGTCTTCAAT
CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTCTCAATCTGCTTCCTTGCTACCTCAGG
AAGATAAAACTTGTATCTTCAACCTGCTCTCTTACTACCTCAGAGAG
Found at i:73200388 original size:21 final size:20
Alignment explanation
Indices: 73200342--73200380 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
73200332 AATGAGCTGC
*
73200342 AATAAAAGAATATTTGCTCA
1 AATAAAAGAATATTTACTCA
73200362 AGATAAAAGAATATTTACT
1 A-ATAAAAGAATATTTACT
73200381 TAGAATAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (20 bp):
AATAAAAGAATATTTACTCA
Found at i:73201190 original size:18 final size:18
Alignment explanation
Indices: 73201167--73201204 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
73201157 GTGCAATGGT
73201167 GACGGTACTTCCCCTGCC
1 GACGGTACTTCCCCTGCC
73201185 GACGGTACTTCCCCTGCC
1 GACGGTACTTCCCCTGCC
73201203 GA
1 GA
73201205 GTGAATGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.13, C:0.42, G:0.24, T:0.21
Consensus pattern (18 bp):
GACGGTACTTCCCCTGCC
Found at i:73203767 original size:26 final size:26
Alignment explanation
Indices: 73203731--73203783 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
73203721 TTGAGATTCC
73203731 AGCATATGATCCTTCATATCCTGCTG
1 AGCATATGATCCTTCATATCCTGCTG
*
73203757 AGCATATGATCTTTCATATCCTGCTG
1 AGCATATGATCCTTCATATCCTGCTG
73203783 A
1 A
73203784 ATCTTGGCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.36
Consensus pattern (26 bp):
AGCATATGATCCTTCATATCCTGCTG
Found at i:73204207 original size:20 final size:20
Alignment explanation
Indices: 73204182--73204221 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
73204172 ACTTCACACT
73204182 TAGCACATCAACCTGAACCG
1 TAGCACATCAACCTGAACCG
**
73204202 TAGCACATCAGTCTGAACCG
1 TAGCACATCAACCTGAACCG
73204222 CTAAGGTCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17
Consensus pattern (20 bp):
TAGCACATCAACCTGAACCG
Found at i:73220890 original size:19 final size:20
Alignment explanation
Indices: 73220854--73220891 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
73220844 ATTAATTTTA
73220854 AATTTAATTATAAAATATAG
1 AATTTAATTATAAAATATAG
*
73220874 AATTTAA-TATAAGATATA
1 AATTTAATTATAAAATATA
73220892 TTTATTTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (20 bp):
AATTTAATTATAAAATATAG
Found at i:73221875 original size:18 final size:16
Alignment explanation
Indices: 73221854--73221898 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
73221844 AATAAAAAAT
73221854 TTATTTTTAATTGAATAG
1 TTATTTTTAATT--ATAG
* *
73221872 TTATTTGTAACTATAG
1 TTATTTTTAATTATAG
73221888 TTATTTTTAAT
1 TTATTTTTAAT
73221899 GGCACCTGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 13 0.57
18 10 0.43
ACGTcount: A:0.31, C:0.02, G:0.09, T:0.58
Consensus pattern (16 bp):
TTATTTTTAATTATAG
Found at i:73222878 original size:66 final size:66
Alignment explanation
Indices: 73222772--73223100 Score: 577
Period size: 66 Copynumber: 5.0 Consensus size: 66
73222762 CAAACAAAGA
* * * * *
73222772 CTATTCAAGTGTCACGGTTGGTGACCAAGAATGGAGGTCCTTATTACAAGGAGATGAAGGAACGG
1 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTGCAGGGAGATGATGGAACGG
73222837 G
66 G
73222838 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTGCAGGGAGATGATGGAACGG
1 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTGCAGGGAGATGATGGAACGG
73222903 G
66 G
73222904 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTGCAGGGAGATGATGGAACGG
1 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTGCAGGGAGATGATGGAACGG
73222969 G
66 G
73222970 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTGCAGGGAGATGATGGAACGG
1 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTGCAGGGAGATGATGGAACGG
73223035 G
66 G
* * * *
73223036 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTTCTTATTACAGGGAGCTGATGAAACGG
1 CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTGCAGGGAGATGATGGAACGG
73223101 AACAAAACAT
Statistics
Matches: 254, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 254 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (66 bp):
CTATTCAAGTTTCACAGTTGGTGACCAAGAATGGAGGTCCTTATTGCAGGGAGATGATGGAACGG
G
Found at i:73223944 original size:12 final size:12
Alignment explanation
Indices: 73223927--73223951 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73223917 TTGTTGTACT
73223927 TGTTGGCAAATA
1 TGTTGGCAAATA
73223939 TGTTGGCAAATA
1 TGTTGGCAAATA
73223951 T
1 T
73223952 ACTATTGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (12 bp):
TGTTGGCAAATA
Found at i:73228582 original size:48 final size:48
Alignment explanation
Indices: 73228504--73228653 Score: 183
Period size: 48 Copynumber: 3.1 Consensus size: 48
73228494 CACATGGTAG
* * * * *
73228504 GATGCGAATGCCATATCCTAAATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACACATC
* ** **
73228552 GATGCCAATGCCATGTCCCAAACATTGTCTTACATGGGATCGTAGGTC
1 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACACATC
* **
73228600 GATGCCAATGCTATGTCCCGGACATGGTCTTACATGGGATCACACATC
1 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACACATC
73228648 GATGCC
1 GATGCC
73228654 GATAGCTAGC
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACACATC
Found at i:73235280 original size:27 final size:27
Alignment explanation
Indices: 73235243--73235298 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
73235233 CAAGCTCATT
73235243 ATTAATAGCATCTCTCCAAAAACTAAC
1 ATTAATAGCATCTCTCCAAAAACTAAC
73235270 ATTAATAGCATCTCTCCAAAAACTAAC
1 ATTAATAGCATCTCTCCAAAAACTAAC
73235297 AT
1 AT
73235299 CTATTCAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.45, C:0.25, G:0.04, T:0.27
Consensus pattern (27 bp):
ATTAATAGCATCTCTCCAAAAACTAAC
Found at i:73239046 original size:33 final size:33
Alignment explanation
Indices: 73238950--73239046 Score: 131
Period size: 33 Copynumber: 2.9 Consensus size: 33
73238940 GGCACACGAG
* *
73238950 TAGAGACACGGGTGTGTGTCTCAGTCGTGTGGCC
1 TAGA-ACACGGGCGTGTGTCTCAGCCGTGTGGCC
* *
73238984 TAGAACACGAGCGTGTGTCTCAGCTGTGTGGCC
1 TAGAACACGGGCGTGTGTCTCAGCCGTGTGGCC
**
73239017 TAGAACACGGGCGTGTGTCTTGGCCGTGTG
1 TAGAACACGGGCGTGTGTCTCAGCCGTGTG
73239047 AAACCTGCAA
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 51 0.93
34 4 0.07
ACGTcount: A:0.15, C:0.22, G:0.37, T:0.26
Consensus pattern (33 bp):
TAGAACACGGGCGTGTGTCTCAGCCGTGTGGCC
Found at i:73241239 original size:97 final size:97
Alignment explanation
Indices: 73241048--73241243 Score: 295
Period size: 96 Copynumber: 2.0 Consensus size: 97
73241038 GCCTCCTATT
* **
73241048 TATAGGATTTTGGAAGGGGAAAAACATAAGCTAGCAGGGGCAAAATGATAATATTTCCATATAAC
1 TATAGGATTTTGGAAGGGGAAAAACATAAGCTAGAAAAGGCAAAATGATAATATTTCCATATAAC
* * *
73241113 GGTCAGAAAAGTATTTAATATTTTTGTAACTG
66 GGTAAAAAAAATATTTAATATTTTTGTAACTG
* **
73241145 TATAGGATTTTGGAA-GGGAAAAATATAATTTAGAAAAGGCAAAATGATAATATTTCCATATAAC
1 TATAGGATTTTGGAAGGGGAAAAACATAAGCTAGAAAAGGCAAAATGATAATATTTCCATATAAC
73241209 GGTAAAAAAATATATTTAATATTTTTGTAACTG
66 GGTAAAAAAA-ATATTTAATATTTTTGTAACTG
73241242 TA
1 TA
73241244 AAAAATAGTT
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
96 51 0.57
97 38 0.43
ACGTcount: A:0.42, C:0.07, G:0.18, T:0.32
Consensus pattern (97 bp):
TATAGGATTTTGGAAGGGGAAAAACATAAGCTAGAAAAGGCAAAATGATAATATTTCCATATAAC
GGTAAAAAAAATATTTAATATTTTTGTAACTG
Found at i:73242225 original size:20 final size:20
Alignment explanation
Indices: 73242202--73242239 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
73242192 ATTGGTATTG
*
73242202 ATACTTAAGGAGAAGTATCA
1 ATACTTAACGAGAAGTATCA
*
73242222 ATACTTCACGAGAAGTAT
1 ATACTTAACGAGAAGTAT
73242240 TAGTACTTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.26
Consensus pattern (20 bp):
ATACTTAACGAGAAGTATCA
Found at i:73246233 original size:21 final size:21
Alignment explanation
Indices: 73246201--73246241 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
73246191 AGGCTCGAGG
73246201 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
73246222 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
73246242 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:73256979 original size:16 final size:16
Alignment explanation
Indices: 73256958--73257009 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
73256948 TTTGGTTCGC
73256958 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
73256974 TGTATTGGATTAGAAG
1 TGTATTGGATTAGAGG
73256990 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
73257006 TGTA
1 TGTA
73257010 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:73257262 original size:16 final size:16
Alignment explanation
Indices: 73257225--73257266 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
73257215 TTAATCATAT
*
73257225 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
73257241 TT-AAATATATTATAA
1 TTAAAATATATTATAA
73257256 TTAAAATATAT
1 TTAAAATATAT
73257267 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:73257273 original size:14 final size:15
Alignment explanation
Indices: 73257234--73257275 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
73257224 TTTAAACATA
*
73257234 ATTATTATTAAATAT
1 ATTATAATTAAATAT
73257249 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
73257263 A-TATAATTTAATA
1 ATTATAATTAAATA
73257276 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:73261167 original size:41 final size:41
Alignment explanation
Indices: 73261116--73261211 Score: 129
Period size: 41 Copynumber: 2.3 Consensus size: 41
73261106 AAAAAATGCA
* * *
73261116 TCCAGTTGGAAGCGCTTTTTGCGTGTCACCAGTAAAACACT
1 TCCAGCTGGAAGCGCTTTCTGCATGTCACCAGTAAAACACT
* **
73261157 TCCAGCTGGAAGCTCTTTCTGCATGTCACCAGTAAAATGCT
1 TCCAGCTGGAAGCGCTTTCTGCATGTCACCAGTAAAACACT
*
73261198 TCTAGCTGGAAGCG
1 TCCAGCTGGAAGCG
73261212 TTAACGAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (41 bp):
TCCAGCTGGAAGCGCTTTCTGCATGTCACCAGTAAAACACT
Found at i:73263631 original size:32 final size:32
Alignment explanation
Indices: 73263594--73263710 Score: 119
Period size: 32 Copynumber: 3.6 Consensus size: 32
73263584 TAAAGGAATA
**
73263594 TTGTTATCATTTAACAAAATGCTAGTTGATAT
1 TTGTTATCATTTAACAAAATGAAAGTTGATAT
* *
73263626 TTGTTATCATTTTACAAAATTAAAGTTG-TAAT
1 TTGTTATCATTTAACAAAATGAAAGTTGAT-AT
* * **
73263658 TTGTTATCTTTTCACAAAATGAAAAACTGATAT
1 TTGTTATCATTTAACAAAATG-AAAGTTGATAT
* *
73263691 TTATTATCATTTAATAAAAT
1 TTGTTATCATTTAACAAAAT
73263711 CACTTGTTTA
Statistics
Matches: 69, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
31 1 0.01
32 44 0.64
33 23 0.33
34 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.44
Consensus pattern (32 bp):
TTGTTATCATTTAACAAAATGAAAGTTGATAT
Found at i:73264655 original size:17 final size:17
Alignment explanation
Indices: 73264612--73264657 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
73264602 CAATTACATA
*
73264612 CAAAGAATATAAAAAAC
1 CAAAGAATATTAAAAAC
* *
73264629 AAATAGAATATTATAAAC
1 CAA-AGAATATTAAAAAC
73264647 CAAAGAATATT
1 CAAAGAATATT
73264658 GGTGGTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.63, C:0.09, G:0.07, T:0.22
Consensus pattern (17 bp):
CAAAGAATATTAAAAAC
Found at i:73265524 original size:17 final size:17
Alignment explanation
Indices: 73265502--73265535 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
73265492 AAACTTCTTC
73265502 ATCGTCCACAACCCTAA
1 ATCGTCCACAACCCTAA
73265519 ATCGTCCACAACCCTAA
1 ATCGTCCACAACCCTAA
73265536 CTTCTTGTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.41, G:0.06, T:0.18
Consensus pattern (17 bp):
ATCGTCCACAACCCTAA
Found at i:73266406 original size:15 final size:15
Alignment explanation
Indices: 73266388--73266416 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73266378 TTTACTATCA
73266388 TGTCTTTTATATTTC
1 TGTCTTTTATATTTC
73266403 TGTCTTTTATATTT
1 TGTCTTTTATATTT
73266417 TGCATGCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.10, G:0.07, T:0.69
Consensus pattern (15 bp):
TGTCTTTTATATTTC
Found at i:73270114 original size:27 final size:27
Alignment explanation
Indices: 73270040--73270128 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 27
73270030 CAAAATAGTC
* * *
73270040 ATTTTACCCTAC-AGAGGTATGTCAGTT
1 ATTTTACACTACAAG-GGTATTTCAGTA
*
73270067 ACTTTACACTACAAGGGTATTTCAGTA
1 ATTTTACACTACAAGGGTATTTCAGTA
*
73270094 ATTTTACACTATAAGGGTATTTC-GATA
1 ATTTTACACTACAAGGGTATTTCAG-TA
73270121 ATTTTACA
1 ATTTTACA
73270129 AATCGGGGGT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.02
27 51 0.94
28 2 0.04
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCAGTA
Found at i:73270463 original size:27 final size:27
Alignment explanation
Indices: 73270080--73270474 Score: 376
Period size: 27 Copynumber: 14.7 Consensus size: 27
73270070 TTACACTACA
* * *
73270080 AGGGTATTTCAGTAATTTTACACTAT-A
1 AGGGTATTTCGGTAATTTTACA-AATCG
*
73270107 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
73270134 GGGGTGTTTTGGTAAATTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
73270161 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
73270188 AGGGTATTTCGATAATTTCACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
73270215 AGGGTGTTTCGATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
73270242 AGGGTGTTTCAGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* ** *
73270269 AGGGTGTTTCAATAATTTCACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* **
73270296 CA-AGTATTTTAGTAGA-TTTACAAATCG
1 -AGGGTATTTCGGTA-ATTTTACAAATCG
** **
73270323 AGGGTATTTTAGTAA-TTT-CATAATTA
1 AGGGTATTTCGGTAATTTTACA-AATCG
73270349 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
73270376 -GGAGTATTTCGGTAATTTTACAAA-CTA
1 AGG-GTATTTCGGTAATTTTACAAATC-G
*
73270403 AGGGTATTTCGGTAACTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
73270430 -GGCGTATTTCGGTAATTTTACAAA-CTG
1 AGG-GTATTTCGGTAATTTTACAAATC-G
* *
73270457 GGGGTATTTTGGTAATTT
1 AGGGTATTTCGGTAATTT
73270475 CTCTTTATTA
Statistics
Matches: 314, Mismatches: 40, Indels: 28
0.82 0.10 0.07
Matches are distributed among these distances:
25 2 0.01
26 29 0.09
27 274 0.87
28 9 0.03
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:73272129 original size:20 final size:21
Alignment explanation
Indices: 73272084--73272130 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
73272074 TACGAGTGAG
*
73272084 CACACAGGTGTGTGGGGTAGC
1 CACACAGGTGTGTGGGATAGC
* *
73272105 TACACGGGTGTGT-GGATAGC
1 CACACAGGTGTGTGGGATAGC
73272125 CACACA
1 CACACA
73272131 ACCATGTTTA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.23, C:0.21, G:0.36, T:0.19
Consensus pattern (21 bp):
CACACAGGTGTGTGGGATAGC
Found at i:73273630 original size:17 final size:16
Alignment explanation
Indices: 73273608--73273667 Score: 54
Period size: 17 Copynumber: 3.8 Consensus size: 16
73273598 ATTATTTTAA
73273608 TAATTTAATATTTAATT
1 TAATTTAATATTT-ATT
*
73273625 TAATTTAATACTTATCT
1 TAATTTAATATTTAT-T
*
73273642 TAA--TAGTATTT-TAT
1 TAATTTAATATTTAT-T
73273656 TAATTTAATATT
1 TAATTTAATATT
73273668 AAAACGATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
14 5 0.14
15 6 0.17
16 8 0.23
17 16 0.46
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (16 bp):
TAATTTAATATTTATT
Found at i:73275425 original size:15 final size:15
Alignment explanation
Indices: 73275388--73275443 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
73275378 ATTTATCAAT
* *
73275388 TTAAAACCCAAAACC
1 TTAAAGCCCTAAACC
73275403 TT--AGCCCTAAACC
1 TTAAAGCCCTAAACC
73275416 TTAAAGCCCTAAACC
1 TTAAAGCCCTAAACC
73275431 TTAAAGCCCTAAA
1 TTAAAGCCCTAAA
73275444 AAACCAGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
13 11 0.30
15 26 0.70
ACGTcount: A:0.43, C:0.32, G:0.05, T:0.20
Consensus pattern (15 bp):
TTAAAGCCCTAAACC
Found at i:73275429 original size:28 final size:29
Alignment explanation
Indices: 73275388--73275443 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
73275378 ATTTATCAAT
73275388 TTAAAACCCAAAACCTT-AGCCCTAAACC
1 TTAAAACCCAAAACCTTAAGCCCTAAACC
* *
73275416 TTAAAGCCCTAAACCTTAAAGCCCTAAA
1 TTAAAACCCAAAACCTT-AAGCCCTAAA
73275444 AAACCAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 15 0.62
30 9 0.38
ACGTcount: A:0.43, C:0.32, G:0.05, T:0.20
Consensus pattern (29 bp):
TTAAAACCCAAAACCTTAAGCCCTAAACC
Found at i:73279444 original size:34 final size:33
Alignment explanation
Indices: 73279395--73279465 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
73279385 TTAACTTGGG
* * *
73279395 TTTAGTTTTAGTTAATTAATTTTATTATTGTTAT
1 TTTAGTTTAAGTTAATT-AGTTAATTATTGTTAT
* *
73279429 TTTAGTTTAATTTAATTAGTTAATTATTGTTGT
1 TTTAGTTTAAGTTAATTAGTTAATTATTGTTAT
73279462 TTTA
1 TTTA
73279466 AATTCACATT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 17 0.53
34 15 0.47
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (33 bp):
TTTAGTTTAAGTTAATTAGTTAATTATTGTTAT
Found at i:73280817 original size:17 final size:17
Alignment explanation
Indices: 73280759--73280821 Score: 54
Period size: 17 Copynumber: 3.3 Consensus size: 17
73280749 ACTTATCCCT
73280759 TTTTCTATTAAAATATTA
1 TTTT-TATTAAAATATTA
*
73280777 TTTTTAATTTTTAATTATATTTA
1 TTTTT-A---TTAA-AATA-TTA
73280800 TTTTTATTAAAATATTA
1 TTTTTATTAAAATATTA
73280817 TTTTT
1 TTTTT
73280822 TATAATTGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
17 9 0.24
18 8 0.22
19 4 0.11
21 4 0.11
22 4 0.11
23 8 0.22
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTTATTAAAATATTA
Found at i:73280821 original size:18 final size:18
Alignment explanation
Indices: 73280758--73280824 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 18
73280748 GACTTATCCC
73280758 TTTTTCTATTAAAATATTA
1 TTTTT-TATTAAAATATTA
* *
73280777 TTTTTAATTTTTAATTATATT-
1 -TTTT--TTATTAA-AATATTA
73280798 TATTTTTATTAAAATATTA
1 T-TTTTTATTAAAATATTA
73280817 TTTTTTAT
1 TTTTTTAT
73280825 AATTGATGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
18 12 0.32
19 7 0.18
20 5 0.13
21 8 0.21
22 6 0.16
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTTTATTAAAATATTA
Found at i:73280822 original size:19 final size:19
Alignment explanation
Indices: 73280758--73280822 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
73280748 GACTTATCCC
*
73280758 TTTTTCTATTAAAATATTA
1 TTTTTTTATTAAAATATTA
* *
73280777 TTTTTAATTTTTAATTATATT-
1 TTTTT--TTATTAA-AATATTA
*
73280798 TATTTTTATTAAAATATTA
1 TTTTTTTATTAAAATATTA
73280817 TTTTTT
1 TTTTTT
73280823 ATAATTGATG
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
18 5 0.14
19 16 0.46
21 9 0.26
22 5 0.14
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTTTTATTAAAATATTA
Found at i:73287201 original size:17 final size:17
Alignment explanation
Indices: 73287179--73287215 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
73287169 CAAGATTTAG
73287179 TATTTATTAGTATAATA
1 TATTTATTAGTATAATA
73287196 TA--T-TTAGTATAATA
1 TATTTATTAGTATAATA
73287210 TATTTA
1 TATTTA
73287216 GTATTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 6
0.74 0.00 0.26
Matches are distributed among these distances:
14 13 0.76
15 1 0.06
16 1 0.06
17 2 0.12
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (17 bp):
TATTTATTAGTATAATA
Found at i:73287204 original size:14 final size:14
Alignment explanation
Indices: 73287185--73287219 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
73287175 TTAGTATTTA
73287185 TTAGTATAATATAT
1 TTAGTATAATATAT
73287199 TTAGTATAATATAT
1 TTAGTATAATATAT
73287213 TTAGTAT
1 TTAGTAT
73287220 TTATTAGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (14 bp):
TTAGTATAATATAT
Found at i:73293415 original size:37 final size:37
Alignment explanation
Indices: 73293361--73293433 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
73293351 GCAAGATGAG
73293361 ATGCTTTCTTTGAGACGATTCACATGTGTTAAAGAGT
1 ATGCTTTCTTTGAGACGATTCACATGTGTTAAAGAGT
*
73293398 ATGCTTTCTTTGTGACGATTCACATGTGTTAAAGAG
1 ATGCTTTCTTTGAGACGATTCACATGTGTTAAAGAG
73293434 ATGTTTGAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (37 bp):
ATGCTTTCTTTGAGACGATTCACATGTGTTAAAGAGT
Found at i:73294100 original size:23 final size:22
Alignment explanation
Indices: 73294047--73294101 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
73294037 AAAGTGAATA
* *
73294047 AAACAAACAGAGTAAAGAAAAG
1 AAACAAAAAGAATAAAGAAAAG
*
73294069 AAACAAAAAGAATAGAGAAAAG
1 AAACAAAAAGAATAAAGAAAAG
73294091 AGAACAAAAAG
1 A-AACAAAAAG
73294102 CATTCGAGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 20 0.69
23 9 0.31
ACGTcount: A:0.71, C:0.07, G:0.18, T:0.04
Consensus pattern (22 bp):
AAACAAAAAGAATAAAGAAAAG
Found at i:73295676 original size:20 final size:21
Alignment explanation
Indices: 73295635--73295718 Score: 116
Period size: 21 Copynumber: 4.0 Consensus size: 21
73295625 GTGAAGTATT
73295635 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
73295656 TCAGGCACCTCGTGT-TCGTA
1 TCAGGCACCTCGTGTGTCGTA
*
73295676 TCAGGCACCTCGTGTGTCGTT
1 TCAGGCACCTCGTGTGTCGTA
* * **
73295697 TTAGGCACTTTATGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
73295718 T
1 T
73295719 ACTGATCAGG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
20 20 0.36
21 36 0.64
ACGTcount: A:0.14, C:0.25, G:0.26, T:0.35
Consensus pattern (21 bp):
TCAGGCACCTCGTGTGTCGTA
Found at i:73298433 original size:233 final size:233
Alignment explanation
Indices: 73298026--73298451 Score: 699
Period size: 233 Copynumber: 1.8 Consensus size: 233
73298016 TAGACTGTTG
* * * * * *
73298026 GATTTGGGGGAGCTCAATTATAAATAGAGAGTCTTCACCTCAGTTGTAAATCATCTGTTGTTTTT
1 GATTTGGGAGAGATCAACTATAAATAGAGAGCCTCCACCTCAGTTGTAAATCATCTATTGTTTTT
** *
73298091 GTATTCTTTGAGAAAGTGAATACAATTGAGAGCATTTACTCAAACAGTTTTCGTGCATAGTTTTT
66 GTATTCTTTGAGAAAGTGAATACAATTGAGAGCATTTACTCAAACACCTCTCGTGCATAGTTTTT
* *
73298156 TATGGCTATTTTGTTCTCTAAACATTCTTTTGTCTTTGTGTTGCTTTCACTATATAAATTGGTTT
131 TATGGATATTTTGTCCTCTAAACATTCTTTTGTCTTTGTGTTGCTTTCACTATATAAATTGGTTT
73298221 GTATGCTTTTTCTTAAGCATTCTTTAATTTGACAGTTT
196 GTATGCTTTTTCTTAAGCATTCTTTAATTTGACAGTTT
*
73298259 GATTTGGGAGAGATCAACTATAAATAGAGAGCCTCCCCCTCAGTTGTAAATCATCTATTGTTTTT
1 GATTTGGGAGAGATCAACTATAAATAGAGAGCCTCCACCTCAGTTGTAAATCATCTATTGTTTTT
73298324 GTATTCTTTGAGAAAGTGAATACAATTGAGAGCATTTACTCAAACACCTCTCGTGCATAGTTTTT
66 GTATTCTTTGAGAAAGTGAATACAATTGAGAGCATTTACTCAAACACCTCTCGTGCATAGTTTTT
* * ***
73298389 TATGGATATTTTGTCCTTTAAGCATTCTTTTGTCTTTGTGTTGCTTTTGTTATATAAATTGGT
131 TATGGATATTTTGTCCTCTAAACATTCTTTTGTCTTTGTGTTGCTTTCACTATATAAATTGGT
73298452 GCCATGGAGG
Statistics
Matches: 176, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
233 176 1.00
ACGTcount: A:0.25, C:0.14, G:0.17, T:0.43
Consensus pattern (233 bp):
GATTTGGGAGAGATCAACTATAAATAGAGAGCCTCCACCTCAGTTGTAAATCATCTATTGTTTTT
GTATTCTTTGAGAAAGTGAATACAATTGAGAGCATTTACTCAAACACCTCTCGTGCATAGTTTTT
TATGGATATTTTGTCCTCTAAACATTCTTTTGTCTTTGTGTTGCTTTCACTATATAAATTGGTTT
GTATGCTTTTTCTTAAGCATTCTTTAATTTGACAGTTT
Found at i:73302603 original size:6 final size:6
Alignment explanation
Indices: 73302592--73302648 Score: 78
Period size: 6 Copynumber: 9.5 Consensus size: 6
73302582 AAACAACCTT
* * *
73302592 AAAATC AAAATC AAAATC AAAATT AAAATC AAAATC AAATTC AAATTC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
*
73302640 AAATTC AAA
1 AAAATC AAA
73302649 TGTTGTTTAC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 48 1.00
ACGTcount: A:0.63, C:0.14, G:0.00, T:0.23
Consensus pattern (6 bp):
AAAATC
Found at i:73318986 original size:27 final size:27
Alignment explanation
Indices: 73318956--73319133 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
73318946 ATATTGAGCC
* *
73318956 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
73318983 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
73319010 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
73319038 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
73319065 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
73319092 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
73319119 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73319134 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:73319095 original size:82 final size:81
Alignment explanation
Indices: 73318977--73319132 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
73318967 TGCTATATAA
* *
73318977 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
73319042 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
73319059 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
73319123 CACTTAGTGC
65 CACTTAGTGC
73319133 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:73333520 original size:28 final size:28
Alignment explanation
Indices: 73333480--73333537 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
73333470 TAGAAGTGGA
73333480 CAAGGAACATATAGACGAGGCAATCAAT
1 CAAGGAACATATAGACGAGGCAATCAAT
*
73333508 CAAGGAACATATAGACGAGGTAATCAAT
1 CAAGGAACATATAGACGAGGCAATCAAT
73333536 CA
1 CA
73333538 TATGGTAGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.16
Consensus pattern (28 bp):
CAAGGAACATATAGACGAGGCAATCAAT
Found at i:73338345 original size:16 final size:16
Alignment explanation
Indices: 73338314--73338347 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
73338304 AAGGAGAAGG
**
73338314 AGAAGAAGAAGGAAAA
1 AGAAGAAGAAAAAAAA
73338330 AGAAGAAGAAAAAAAA
1 AGAAGAAGAAAAAAAA
73338346 AG
1 AG
73338348 GTAATGTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (16 bp):
AGAAGAAGAAAAAAAA
Found at i:73338558 original size:8 final size:8
Alignment explanation
Indices: 73338538--73338570 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
73338528 TTACAAATTG
73338538 TTAGTGT-
1 TTAGTGTA
73338545 TTAGTGTA
1 TTAGTGTA
73338553 TTAGTGTA
1 TTAGTGTA
73338561 TTAGTGTA
1 TTAGTGTA
73338569 TT
1 TT
73338571 GTGATTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.28
8 18 0.72
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (8 bp):
TTAGTGTA
Found at i:73338642 original size:100 final size:95
Alignment explanation
Indices: 73338532--73338711 Score: 290
Period size: 100 Copynumber: 1.8 Consensus size: 95
73338522 ATTAGGTTAC
*
73338532 AAATTGTTAGTGTTTAGT-GTATTAGTGTATTAGTGTATTGTGATTTTTTTAGTAATAATATATT
1 AAATTGTTAGTGTTTAGTAGT-TTAGTGTATTAGTATATTGTG-TTTTTTTAG---TAATATATT
73338596 TAAAAAAAAATAATTTTATAGTTGATTAGGTTATAT
61 T-AAAAAAAATAATTTTATAGTTGATTAGGTTATAT
73338632 AAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTATATTGTGTTTTTTTAGTAATATATTTAAAA
1 AAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTATATTGTGTTTTTTTAGTAATATATTTAAAA
73338697 AAAATAATTTTATAG
66 AAAATAATTTTATAG
73338712 CTATTTTATT
Statistics
Matches: 78, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
95 19 0.24
96 10 0.13
99 9 0.12
100 38 0.49
101 2 0.03
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (95 bp):
AAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTATATTGTGTTTTTTTAGTAATATATTTAAAA
AAAATAATTTTATAGTTGATTAGGTTATAT
Found at i:73338748 original size:113 final size:111
Alignment explanation
Indices: 73338619--73339009 Score: 457
Period size: 114 Copynumber: 3.6 Consensus size: 111
73338609 TTTTATAGTT
*
73338619 GATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTATATTGTGTTTTTTTAGT
1 GATTAGATTATATAAATTGTTAGTGTTTAGTAGTTTAGTGT-TTAGTATATTGTGTTTTTTTAGT
73338684 AATATATTTAAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
65 AATATATTT-AAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* * * *
73338732 GATTAGATTATATAAATTGCTAGTGTTTAGTGGTTTAGTGGTTTAATGTATTGTGATTTTTTTAG
1 GATTAGATTATATAAATTGTTAGTGTTTAGTAGTTTAGT-GTTTAGTATATTGTG-TTTTTTTAG
* *
73338797 TAATATATTTTTAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
64 TAATATA-TTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* * * * *
73338846 TATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTA-T-GATT-T-TTTATTTAGT
1 GATTAGATTATATAAATTGTTAGTGTTTAGTAGTTTAGTGT-TTAGTATATTGTGTTTTTTTAGT
* * *
73338907 AATGTATTTAAAAAAATAATTTTATAGTTATTTTGTGTTAGTAATTT--
65 AATATATTTAAAAAAATAATTTTATAGCTA-TTT-TATTAGTAATTTAA
* *
73338954 -A-T-GA-T-TATAAATTGTTAGTGTTTA-TAGTTTAGTGTTTTGTGAT-TTGTGATTTTTTA
1 GATTAGATTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTTTAGT-ATATTGTGTTTTTTTA
73339010 ATGTCATTTT
Statistics
Matches: 244, Mismatches: 23, Indels: 30
0.82 0.08 0.10
Matches are distributed among these distances:
101 2 0.01
102 11 0.05
103 21 0.09
104 2 0.01
105 7 0.03
106 1 0.00
107 1 0.00
108 21 0.09
109 17 0.07
110 11 0.05
111 1 0.00
112 3 0.01
113 50 0.20
114 93 0.38
115 3 0.01
ACGTcount: A:0.31, C:0.01, G:0.16, T:0.53
Consensus pattern (111 bp):
GATTAGATTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTTTAGTATATTGTGTTTTTTTAGTA
ATATATTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
Found at i:73338851 original size:114 final size:113
Alignment explanation
Indices: 73338619--73338960 Score: 480
Period size: 114 Copynumber: 3.0 Consensus size: 113
73338609 TTTTATAGTT
* * *
73338619 GATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTATATTGTGTTTTTTTAGT
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAATGTATTGTGTTTTTTTAGT
*
73338684 AATATATTTAAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
66 AATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* *
73338732 GATTAGATTATATAAATTGCTAGTGTTTAGTGGTTTAGTGGT-TTAATGTATTGTGATTTTTTTA
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGT-GTATTAATGTATTGTG-TTTTTTTA
* *
73338796 GTAATATATTTTTAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
64 GTAATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* *
73338846 TATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATT-ATG-ATT-T-TTTATTTAGT
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAATGTATTGTGTTTTTTTAGT
* * * *
73338907 AATGTA-TTTAAAAAAATAATTTTATAGTTATTTTGTGTTAGTAATTTAT
66 AATATATTTTAAAAAAATAATTTTATAGCTA-TTT-TATTAGTAATTTAA
73338956 GATTA
1 GATTA
73338961 TAAATTGTTA
Statistics
Matches: 205, Mismatches: 19, Indels: 13
0.86 0.08 0.05
Matches are distributed among these distances:
108 21 0.10
109 17 0.08
110 16 0.08
111 1 0.00
112 3 0.01
113 52 0.25
114 95 0.46
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.52
Consensus pattern (113 bp):
GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTAGTGTATTAATGTATTGTGTTTTTTTAGT
AATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
Found at i:73341188 original size:33 final size:33
Alignment explanation
Indices: 73341083--73341189 Score: 117
Period size: 33 Copynumber: 3.2 Consensus size: 33
73341073 AGTACTCCGT
* * * *
73341083 TCCTTCCGGCCCGTATCCACCCAT-GTACTCAAC
1 TCCTCCCGACCCGTATCCA-CCGTCGTACTCTAC
* * * *
73341116 TCCTCCAGAGCCGTATTCACCGCCGTACTCTAC
1 TCCTCCCGACCCGTATCCACCGTCGTACTCTAC
*
73341149 TCCTCCCGACCCGTATCCACCGTCGTATTCTAC
1 TCCTCCCGACCCGTATCCACCGTCGTACTCTAC
73341182 TCCTCCCG
1 TCCTCCCG
73341190 GCTCAAGTTC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
32 2 0.03
33 58 0.97
ACGTcount: A:0.16, C:0.46, G:0.13, T:0.25
Consensus pattern (33 bp):
TCCTCCCGACCCGTATCCACCGTCGTACTCTAC
Found at i:73344851 original size:27 final size:27
Alignment explanation
Indices: 73344785--73344861 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
73344775 TATGGGCCCC
*
73344785 ACTAGTTGCGCCTACCAAGA-AGGCACA
1 ACTAGTTGCGCCTATC-AGATAGGCACA
* *
73344812 ACTAGTCGCGCCTATCAGATAGGCTCA
1 ACTAGTTGCGCCTATCAGATAGGCACA
* *
73344839 ACTAGTTGAGCCTGTCAGATAGG
1 ACTAGTTGCGCCTATCAGATAGG
73344862 TGCAACATGT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.29, C:0.26, G:0.25, T:0.21
Consensus pattern (27 bp):
ACTAGTTGCGCCTATCAGATAGGCACA
Found at i:73346635 original size:26 final size:26
Alignment explanation
Indices: 73346599--73346650 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
73346589 ATGCAAACTT
73346599 TGGGGCAAGTTGTGAATCATCTACAA
1 TGGGGCAAGTTGTGAATCATCTACAA
73346625 TGGGGCAAGTTGTGAATCATCTACAA
1 TGGGGCAAGTTGTGAATCATCTACAA
73346651 GGGAAAGGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (26 bp):
TGGGGCAAGTTGTGAATCATCTACAA
Found at i:73346820 original size:223 final size:223
Alignment explanation
Indices: 73346426--73346854 Score: 750
Period size: 223 Copynumber: 1.9 Consensus size: 223
73346416 ATACAAGGAA
* *
73346426 AAGGGGAAGGAGTTGTGAGGCAATCAACGCTAGAAACAATTTATCTAGTGCAACTTCAAATCAAA
1 AAGGGAAAGGAGTTGTGAGACAATCAACGCTAGAAACAATTTATCTAGTGCAACTTCAAATCAAA
*
73346491 ATGTAATTAAGAGATTTTTATTAAGGGATGCATATTCTTTAGGGACACTTATGATGGATAAACAT
66 ATGTAATTAAGAGATTTTTATTAAGGGATGCATATTCTTTAAGGACACTTATGATGGATAAACAT
* *
73346556 CTACTAGATGTTGAGCTAGGCTCTCACAATATTATGCAAACTTTGGGGCAAGTTGTGAATCATCT
131 CTACTAGATGTTGAACTAGGCTCTAACAATATTATGCAAACTTTGGGGCAAGTTGTGAATCATCT
73346621 ACAATGGGGCAAGTTGTGAATCATCTAC
196 ACAATGGGGCAAGTTGTGAATCATCTAC
* *
73346649 AAGGGAAAGGAGTTGTGAGACAATCAATGCTCGAAACAATTTATCTAGTGCAACTTCAAATCAAA
1 AAGGGAAAGGAGTTGTGAGACAATCAACGCTAGAAACAATTTATCTAGTGCAACTTCAAATCAAA
*
73346714 ATGTAATTAAGAGATTTTTATTAAGGGATGCATATTCTTTAAGGACACTTATGATGGATTAACAT
66 ATGTAATTAAGAGATTTTTATTAAGGGATGCATATTCTTTAAGGACACTTATGATGGATAAACAT
* * *
73346779 CTACTATATGTTGAACTGGGCTCTAACAATTTTATGCAAACTTTGGGGCAAGTTGTGAATCATCT
131 CTACTAGATGTTGAACTAGGCTCTAACAATATTATGCAAACTTTGGGGCAAGTTGTGAATCATCT
*
73346844 ACAATGTGGCA
196 ACAATGGGGCA
73346855 CCTTACACCC
Statistics
Matches: 194, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
223 194 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (223 bp):
AAGGGAAAGGAGTTGTGAGACAATCAACGCTAGAAACAATTTATCTAGTGCAACTTCAAATCAAA
ATGTAATTAAGAGATTTTTATTAAGGGATGCATATTCTTTAAGGACACTTATGATGGATAAACAT
CTACTAGATGTTGAACTAGGCTCTAACAATATTATGCAAACTTTGGGGCAAGTTGTGAATCATCT
ACAATGGGGCAAGTTGTGAATCATCTAC
Found at i:73352088 original size:60 final size:60
Alignment explanation
Indices: 73351975--73352090 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 60
73351965 AATTATCTTG
*** * * *
73351975 GTCTCAATGATAATCTGAATGGTTAGGATGTTAATCTTCCTGTTCGTAAGGTGATACCTA
1 GTCTCAATGATAATCTGAATGGTTAGGACACTAATCCTCCTATTCATAAGGTGATACCTA
* * *
73352035 GTCTGAATGATAATTTGAATGGTTAGGACACTAATCCTCCTATTCATAGGGTGATA
1 GTCTCAATGATAATCTGAATGGTTAGGACACTAATCCTCCTATTCATAAGGTGATA
73352091 TATGACCAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
60 47 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (60 bp):
GTCTCAATGATAATCTGAATGGTTAGGACACTAATCCTCCTATTCATAAGGTGATACCTA
Found at i:73353421 original size:27 final size:26
Alignment explanation
Indices: 73353389--73353445 Score: 96
Period size: 27 Copynumber: 2.2 Consensus size: 26
73353379 ACTATAGAAG
*
73353389 AAGATAACTCCAAACCCAACTAGGGA
1 AAGATAACTCCAAACCCAACAAGGGA
73353415 AANGATAACTCCAAACCCAACAAGGGA
1 AA-GATAACTCCAAACCCAACAAGGGA
73353442 AAGA
1 AAGA
73353446 ATTCAAACTC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 4 0.14
27 25 0.86
ACGTcount: A:0.49, C:0.25, G:0.16, T:0.09
Consensus pattern (26 bp):
AAGATAACTCCAAACCCAACAAGGGA
Found at i:73354630 original size:23 final size:25
Alignment explanation
Indices: 73354591--73354641 Score: 79
Period size: 23 Copynumber: 2.1 Consensus size: 25
73354581 CATACATTTG
*
73354591 TAATAATTATTACTAAAATATAATA
1 TAATAATTATTACTAAAATATAACA
73354616 TAATAA-TA-TACTAAAATATAACA
1 TAATAATTATTACTAAAATATAACA
73354639 TAA
1 TAA
73354642 AAGAAAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 17 0.68
24 2 0.08
25 6 0.24
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (25 bp):
TAATAATTATTACTAAAATATAACA
Found at i:73354653 original size:10 final size:10
Alignment explanation
Indices: 73354640--73354726 Score: 54
Period size: 10 Copynumber: 8.4 Consensus size: 10
73354630 AATATAACAT
73354640 AAAAGAAAAG
1 AAAAGAAAAG
73354650 AAAA-AAATAG
1 AAAAGAAA-AG
73354660 AAAA-AAATAG
1 AAAAGAAA-AG
*
73354670 AAAACAAACAG
1 AAAAGAAA-AG
*
73354681 AGAAAGAAACG
1 A-AAAGAAAAG
*
73354692 AAAAG-GAAG
1 AAAAGAAAAG
*
73354701 AAAAAAAGAAG
1 AAAAGAA-AAG
*
73354712 GAAAGAAAAAG
1 AAAAG-AAAAG
73354723 AAAA
1 AAAA
73354727 TGGAAAATTG
Statistics
Matches: 61, Mismatches: 10, Indels: 11
0.74 0.12 0.13
Matches are distributed among these distances:
9 9 0.15
10 24 0.39
11 20 0.33
12 8 0.13
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.02
Consensus pattern (10 bp):
AAAAGAAAAG
Found at i:73367051 original size:86 final size:85
Alignment explanation
Indices: 73366890--73367053 Score: 215
Period size: 85 Copynumber: 1.9 Consensus size: 85
73366880 CATAAGCTCG
* * * **
73366890 TACGATGCCAACGTCCTAGACTTGGTCTTACATGTAATCAAATATCAATGCTATTGTCCCAGAAA
1 TACGATGCCAACGTCCTAGACATGGTCTTACACGTAATCAAATATCAATGCCAACGTCCCAGAAA
73366955 GGGTCTTACACGAAATCATA
66 GGGTCTTACACGAAATCATA
* *
73366975 TACGATGTCAATGTCCTAGACATGGTCTTACACGTAACTCACAA-ATCAATGCCAACGTCCCAG-
1 TACGATGCCAACGTCCTAGACATGGTCTTACACGTAA-TCA-AATATCAATGCCAACGTCCCAGA
*
73367038 ACGTGGTCTTACACGA
64 AAG-GGTCTTACACGA
73367054 TAACACATAT
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 35 0.51
86 31 0.46
87 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (85 bp):
TACGATGCCAACGTCCTAGACATGGTCTTACACGTAATCAAATATCAATGCCAACGTCCCAGAAA
GGGTCTTACACGAAATCATA
Found at i:73371900 original size:35 final size:35
Alignment explanation
Indices: 73371861--73371961 Score: 157
Period size: 35 Copynumber: 2.9 Consensus size: 35
73371851 AATCCAACAG
73371861 AAACACGCCAATGCTCATAAGAGCTAGTCCATCCA
1 AAACACGCCAATGCTCATAAGAGCTAGTCCATCCA
* **
73371896 AAACACGCCAATGCTCACAAGAGCTAGTCCATCTG
1 AAACACGCCAATGCTCATAAGAGCTAGTCCATCCA
* *
73371931 AAACACGCTAATGCTCATAAGAGCTAATCCA
1 AAACACGCCAATGCTCATAAGAGCTAGTCCA
73371962 ATTAAACACG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 60 1.00
ACGTcount: A:0.38, C:0.30, G:0.15, T:0.18
Consensus pattern (35 bp):
AAACACGCCAATGCTCATAAGAGCTAGTCCATCCA
Done.