Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 213 of 290
Found at i:73657478 original size:47 final size:45
Alignment explanation
Indices: 73657408--73657516 Score: 130
Period size: 47 Copynumber: 2.4 Consensus size: 45
73657398 AGCTTAAGAT
73657408 CGAATGGCCAATGTGATGAATGTGAAAGTGCATACATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTG-A-ACATGTGATAAGGC
** * *
73657455 CGAATGGTTAATGTGAT-ATATGTGTAAGTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGTGAACATGTGATAAGGC
*
73657500 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
73657517 AAAGTGTGCA
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
45 21 0.40
46 7 0.13
47 25 0.47
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (45 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGAACATGTGATAAGGC
Found at i:73661471 original size:20 final size:20
Alignment explanation
Indices: 73661411--73661534 Score: 81
Period size: 20 Copynumber: 6.2 Consensus size: 20
73661401 TTTGCATTAT
*
73661411 TGGTGGCTTGTCCACAATAT
1 TGGTGGCTTGTCCACAATAC
* * * *** *
73661431 TGGTAGTTTATCTGTATTAC
1 TGGTGGCTTGTCCACAATAC
73661451 TGGTGGCTTGTCCACAATAC
1 TGGTGGCTTGTCCACAATAC
*** *
73661471 TGGCAACTTGTCTACAATAC
1 TGGTGGCTTGTCCACAATAC
* * *
73661491 TGGTAGTTTAT-CAGCAATAC
1 TGGTGGCTTGTCCA-CAATAC
*
73661511 TAGTGGCTTGTCCACAA-AC
1 TGGTGGCTTGTCCACAATAC
73661530 TGGTG
1 TGGTG
73661535 TGTTATTGGA
Statistics
Matches: 73, Mismatches: 29, Indels: 5
0.68 0.27 0.05
Matches are distributed among these distances:
19 7 0.10
20 64 0.88
21 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (20 bp):
TGGTGGCTTGTCCACAATAC
Found at i:73661492 original size:40 final size:40
Alignment explanation
Indices: 73661411--73661494 Score: 96
Period size: 40 Copynumber: 2.1 Consensus size: 40
73661401 TTTGCATTAT
* * ** ** *
73661411 TGGTGGCTTGTCCACAATATTGGTAGTTTATCTGTATTAC
1 TGGTGGCTTGTCCACAATACTGGCAACTTATCTACAATAC
*
73661451 TGGTGGCTTGTCCACAATACTGGCAACTTGTCTACAATAC
1 TGGTGGCTTGTCCACAATACTGGCAACTTATCTACAATAC
73661491 TGGT
1 TGGT
73661495 AGTTTATCAG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (40 bp):
TGGTGGCTTGTCCACAATACTGGCAACTTATCTACAATAC
Found at i:73661517 original size:60 final size:59
Alignment explanation
Indices: 73661417--73661532 Score: 169
Period size: 60 Copynumber: 1.9 Consensus size: 59
73661407 TTATTGGTGG
* * * * *
73661417 CTTGTCCACAATATTGGTAGTTTATCTGTATTACTGGTGGCTTGTCCACAATACTGGCAA
1 CTTGTCCACAATACTGGTAGTTTATCAGCAATACTAGTGGCTTGTCCACAA-ACTGGCAA
*
73661477 CTTGTCTACAATACTGGTAGTTTATCAGCAATACTAGTGGCTTGTCCACAAACTGG
1 CTTGTCCACAATACTGGTAGTTTATCAGCAATACTAGTGGCTTGTCCACAAACTGG
73661533 TGTGTTATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
59 5 0.10
60 45 0.90
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (59 bp):
CTTGTCCACAATACTGGTAGTTTATCAGCAATACTAGTGGCTTGTCCACAAACTGGCAA
Found at i:73676890 original size:35 final size:35
Alignment explanation
Indices: 73676823--73676890 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
73676813 TAACACAGTG
* * *
73676823 GCATGCTTAACATGTGAATCAAAATCAGAATAATA
1 GCATGCTTAACACGCGAATCAAAATCACAATAATA
73676858 GCATGCTTAACACGCGAATCAAAAT-ACCAATAA
1 GCATGCTTAACACGCGAATCAAAATCA-CAATAA
73676891 ATTAGTGACA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 1 0.03
35 28 0.97
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (35 bp):
GCATGCTTAACACGCGAATCAAAATCACAATAATA
Found at i:73680019 original size:29 final size:28
Alignment explanation
Indices: 73679987--73680090 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 28
73679977 ATATGATTTG
73679987 GGCCTAATGGGCCATATGAATGAGAATTA
1 GGCCTAATGGGCCATATGAAT-AGAATTA
* * **
73680016 GGCCTAGTGGGCCATAAGAATATGAACCA
1 GGCCTAATGGGCCATATGAATA-GAATTA
* *
73680045 GGCC-AGATGGGCCATTTGAATA-AGATTG
1 GGCCTA-ATGGGCCATATGAATAGA-ATTA
* *
73680073 GGCGTAGTGGGCCATATG
1 GGCCTAATGGGCCATATG
73680091 CATGTATGTA
Statistics
Matches: 58, Mismatches: 13, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
27 1 0.02
28 16 0.28
29 41 0.71
ACGTcount: A:0.30, C:0.16, G:0.32, T:0.22
Consensus pattern (28 bp):
GGCCTAATGGGCCATATGAATAGAATTA
Found at i:73684233 original size:16 final size:16
Alignment explanation
Indices: 73684212--73684254 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
73684202 ATGAATCGGC
73684212 AAAAGCCGAAATACCG
1 AAAAGCCGAAATACCG
**
73684228 AAAAGCCGAAATGTCG
1 AAAAGCCGAAATACCG
*
73684244 AAAAGCTGAAA
1 AAAAGCCGAAA
73684255 GTTGGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.51, C:0.19, G:0.21, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATACCG
Found at i:73684509 original size:29 final size:28
Alignment explanation
Indices: 73684477--73684583 Score: 110
Period size: 29 Copynumber: 3.8 Consensus size: 28
73684467 ATAATATGAT
73684477 TTGGGCCTAATGGGCCATATGAATGAGAA
1 TTGGGCCTAATGGGCCATATGAAT-AGAA
* *
73684506 TTGGGCATAGTGGGCCATCA-GAATATGAA
1 TTGGGCCTAATGGGCCAT-ATGAATA-GAA
* * *
73684535 CTGGGCCAAATGGGCCATTTGAATA-AGA
1 TTGGGCCTAATGGGCCATATGAATAGA-A
*
73684563 TTGGGCCTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
73684584 CATGTATGTA
Statistics
Matches: 63, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
27 1 0.02
28 19 0.30
29 42 0.67
30 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATAGAA
Found at i:73684531 original size:58 final size:57
Alignment explanation
Indices: 73684469--73684580 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 57
73684459 GCATGAATAT
** * *
73684469 AATATGATTTGGGCCTAATGGGCCATATGAATGAGAATTGGGCATAGTGGGCCATCAG
1 AATATGAACTGGGCCAAATGGGCCATATGAATAAG-ATTGGGCATAGTGGGCCATCAG
* *
73684527 AATATGAACTGGGCCAAATGGGCCATTTGAATAAGATTGGGCCTAGTGGGCCAT
1 AATATGAACTGGGCCAAATGGGCCATATGAATAAGATTGGGCATAGTGGGCCAT
73684581 ATGCATGTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 18 0.38
58 30 0.62
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.25
Consensus pattern (57 bp):
AATATGAACTGGGCCAAATGGGCCATATGAATAAGATTGGGCATAGTGGGCCATCAG
Found at i:73685564 original size:21 final size:21
Alignment explanation
Indices: 73685538--73685579 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
73685528 TGTTTTAAAC
*
73685538 AAGGCTTTCGAAGCTGAAAGG
1 AAGGCTTTCGAAACTGAAAGG
73685559 AAGGCTTTCGAAACTGAAAGG
1 AAGGCTTTCGAAACTGAAAGG
73685580 TATGTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.31, T:0.19
Consensus pattern (21 bp):
AAGGCTTTCGAAACTGAAAGG
Found at i:73689091 original size:42 final size:42
Alignment explanation
Indices: 73688982--73689127 Score: 159
Period size: 44 Copynumber: 3.4 Consensus size: 42
73688972 TTTTGGTACA
* * *
73688982 AGATTTCATGTAAGACCATGTCTGGGACGTTGGCATCGATTT
1 AGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATAT
*
73689024 GAGATTTACGTGTAAGACCATGTCTGGGACATTGGCGTCG-TAT
1 -AGATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGATAT
* * *
73689067 ATGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATTGATATT
1 A-GATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATA-T
* * *
73689111 TGATTACATGTAAGACC
1 AGATTTCGTGTAAGACC
73689128 TCATCTGAGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
42 29 0.33
43 29 0.33
44 30 0.34
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (42 bp):
AGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATAT
Found at i:73694747 original size:58 final size:58
Alignment explanation
Indices: 73694653--73694768 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
73694643 GCCCTAAGAA
73694653 AGTTACTTCATTCAACCAAAACTCGCACTTACTGAACTTTGCATAGAGTTTCTTTTTC
1 AGTTACTTCATTCAACCAAAACTCGCACTTACTGAACTTTGCATAGAGTTTCTTTTTC
*
73694711 AGTTACTTCATTCAACCAAAACTCGCACTTATTGAACTTTGCATAGAGTTTCTTTTTC
1 AGTTACTTCATTCAACCAAAACTCGCACTTACTGAACTTTGCATAGAGTTTCTTTTTC
73694769 TTCAGCACTT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (58 bp):
AGTTACTTCATTCAACCAAAACTCGCACTTACTGAACTTTGCATAGAGTTTCTTTTTC
Found at i:73698642 original size:6 final size:6
Alignment explanation
Indices: 73698633--73698702 Score: 54
Period size: 6 Copynumber: 11.3 Consensus size: 6
73698623 TATTAGAACT
* * *
73698633 AGAATC AGAATC AGAATC AG-GTGAC AAAATC AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC
*
73698682 AGGTAA-C AGAATC AAAATC AG
1 A-G-AATC AGAATC AGAATC AG
73698703 GATGGGAATG
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
5 3 0.06
6 40 0.80
7 5 0.10
8 2 0.04
ACGTcount: A:0.49, C:0.16, G:0.19, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:73698669 original size:31 final size:31
Alignment explanation
Indices: 73698633--73698702 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
73698623 TATTAGAACT
*
73698633 AGAATCAGAATCAGAATCAGGTGACAAAATC
1 AGAATCAGAATCAGAATCAGGTAACAAAATC
* *
73698664 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAAAATC
*
73698695 AAAATCAG
1 AGAATCAG
73698703 GATGGGAATG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.49, C:0.16, G:0.19, T:0.17
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAAAATC
Found at i:73698701 original size:19 final size:19
Alignment explanation
Indices: 73698657--73698704 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
73698647 AATCAGGTGA
73698657 CAAAATCA-GAATCAGAAT
1 CAAAATCAGGAATCAGAAT
**
73698675 CAGTATCAGGTAA-CAGAAT
1 CAAAATCAGG-AATCAGAAT
73698694 CAAAATCAGGA
1 CAAAATCAGGA
73698705 TGGGAATGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
18 7 0.29
19 15 0.62
20 2 0.08
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17
Consensus pattern (19 bp):
CAAAATCAGGAATCAGAAT
Found at i:73698869 original size:27 final size:27
Alignment explanation
Indices: 73698830--73698896 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
73698820 CATTGCTACT
*
73698830 CAGATATCAGATATTGTGACAGAGTCAC
1 CAGATA-CAGATATTGTGACAGAGCCAC
*
73698858 CAGATACAGATATTGTGGCAGAGCCAC
1 CAGATACAGATATTGTGACAGAGCCAC
73698885 CAGA-ACAGATAT
1 CAGATACAGATAT
73698897 GATATAGATG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 8 0.22
27 23 0.62
28 6 0.16
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.21
Consensus pattern (27 bp):
CAGATACAGATATTGTGACAGAGCCAC
Found at i:73699113 original size:27 final size:27
Alignment explanation
Indices: 73699083--73699575 Score: 644
Period size: 27 Copynumber: 18.3 Consensus size: 27
73699073 GGGGCAAAAT
* * * *
73699083 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
73699110 GGTAATTCCACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
73699137 AGTAATTCTACTCTATAGGGGTAGTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73699164 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73699191 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
73699218 GGTAATTTTACCCTACAAGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73699245 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
73699272 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
73699299 GATAATTCTACCCTACAGAGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73699326 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
73699353 GGTATTTCTACCTTACAGGGTTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
73699380 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73699407 GGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73699434 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
73699461 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
73699488 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
73699515 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
73699542 GGCATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73699569 GATAATT
1 GGTAATT
73699576 TTATAAATCG
Statistics
Matches: 409, Mismatches: 57, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 409 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:73699614 original size:12 final size:12
Alignment explanation
Indices: 73699597--73699622 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73699587 GGGTAAAACG
73699597 ATAATTCTGTAA
1 ATAATTCTGTAA
73699609 ATAATTCTGTAA
1 ATAATTCTGTAA
73699621 AT
1 AT
73699623 CAAGGGTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (12 bp):
ATAATTCTGTAA
Found at i:73699655 original size:27 final size:26
Alignment explanation
Indices: 73699623--73700045 Score: 380
Period size: 27 Copynumber: 15.8 Consensus size: 26
73699613 TTCTGTAAAT
* *
73699623 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAA-A
* *** **
73699650 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACA-AA
* ** *
73699677 CGAGGGTATTTCAGTAATTTCACAAA
1 CAAGGGTATTTTGGTAATTTTACAAA
*
73699703 TCAGGGGTATTTTGGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
73699730 CTAGGGGTATTTTGATAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
** *
73699757 CTGGGGTATTTTGGTAATTTTATAAA
1 CAAGGGTATTTTGGTAATTTTACAAA
**
73699783 CAAAGGGTATTTTAATAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
* **
73699810 CTAGGGGTATTTTGGTAATTTTTTAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
*
73699837 CCAAGGATATTTTGGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* * *
73699864 CCAGGGGTATTTTGGTGATTTTATAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
*
73699891 CCAAGGGTATTTTTGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* **
73699918 CCAGGGGTATTTTGGTAATTTTGTAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
73699945 CTAAGGGTA-TTTGGTAATTTTACAAA
1 C-AAGGGTATTTTGGTAATTTTACAAA
* * *
73699971 CCAGGGGTATTTTGGTGATTTTATAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
*
73699998 CCAAGGGTATTTTAGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTTACAAA
* *
73700025 CTAGGGGTGTTTTGGTAATTT
1 C-AAGGGTATTTTGGTAATTT
73700046 GGTAAACTAA
Statistics
Matches: 328, Mismatches: 59, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
26 47 0.14
27 280 0.85
28 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (26 bp):
CAAGGGTATTTTGGTAATTTTACAAA
Found at i:73699802 original size:107 final size:108
Alignment explanation
Indices: 73699679--73700055 Score: 562
Period size: 107 Copynumber: 3.5 Consensus size: 108
73699669 TTACAGGTCG
* * * *
73699679 AGGGTATTTCAGTAATTTCACAAA-TCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
1 AGGGTATTTTAGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTATAAACTAAGGGTATTTT
* * * *
73699743 GATAATTTTACAAA-CTGGGGTATTTTGGTAATTTTATAAACAA
65 GGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
* * * *
73699786 AGGGTATTTTAATAATTTTACAAACTAGGGGTATTTTGGTAATTTTTTAAACCAAGGATATTTTG
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTG
73699851 GTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
66 GTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
* * *
73699894 AGGGTATTTTTGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTAAGGGTA-TTTG
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTG
73699958 GTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
66 GTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
* **
73700001 AGGGTATTTTAGTAATTTTACAAACTAGGGGTGTTTTGGTAATTTGGTAAACTAA
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAA
73700056 AGTATTCTAA
Statistics
Matches: 246, Mismatches: 22, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
107 165 0.67
108 81 0.33
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (108 bp):
AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTG
GTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
Found at i:73700052 original size:54 final size:54
Alignment explanation
Indices: 73699679--73700045 Score: 508
Period size: 54 Copynumber: 6.8 Consensus size: 54
73699669 TTACAGGTCG
* * * *
73699679 AGGGTATTTCAGTAATTTCACAAA-TCAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTAGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTATAAACCA
* *
73699733 GGGGTATTTT-GATAATTTTACAAACT-GGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTAG-TAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* *
73699786 AGGGTATTTTAATAATTTTACAAACTAGGGGTATTTTGGTAATTTTTTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* * * *
73699840 AGGATATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* * * *
73699894 AGGGTATTTTTGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACTA
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* * *
73699948 AGGGTA-TTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
*
73700001 AGGGTATTTTAGTAATTTTACAAACTAGGGGTGTTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTT
73700046 GGTAAACTAA
Statistics
Matches: 280, Mismatches: 28, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
53 98 0.35
54 181 0.65
55 1 0.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:73700054 original size:27 final size:27
Alignment explanation
Indices: 73699680--73700045 Score: 439
Period size: 27 Copynumber: 13.6 Consensus size: 27
73699670 TACAGGTCGA
** * *
73699680 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
73699707 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
73699734 GGGTATTTTGATAATTTTACAAA-CTG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
73699760 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
73699787 GGGTATTTTAATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
73699814 GGGTATTTTGGTAATTTTTTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
73699841 GGATATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
73699868 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
73699895 GGGTATTTTTGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
73699922 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
73699949 GGGTA-TTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
73699975 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
73700002 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
73700029 GGGTGTTTTGGTAATTT
1 GGGTATTTTGGTAATTT
73700046 GGTAAACTAA
Statistics
Matches: 282, Mismatches: 55, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
26 44 0.16
27 238 0.84
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:73702005 original size:6 final size:6
Alignment explanation
Indices: 73701987--73702074 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
73701977 AAGAAACATT
* * *
73701987 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATTAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
73702036 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
73702075 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:73702037 original size:31 final size:31
Alignment explanation
Indices: 73701996--73702074 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
73701986 TATCAGAACT
* *
73701996 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
73702027 AGAATTAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
73702058 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
73702075 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:73702504 original size:27 final size:27
Alignment explanation
Indices: 73702474--73702966 Score: 682
Period size: 27 Copynumber: 18.3 Consensus size: 27
73702464 GGGGCAAAAT
* * * *
73702474 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
73702501 GGTAATT-TCACCCTACAGGGGTATTTC
1 GGTAATTCT-ACCCTACAGGGGTATTTC
*
73702528 GGTAATTCTACCGTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73702555 GGTAATTCTACCGTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** **
73702582 AATAATTCTACCCTACAATGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
73702609 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
73702636 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
73702663 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73702690 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
73702717 GGTATTTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
73702744 GGTAATTTTACCCCACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73702771 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
73702798 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
73702825 GGTAATTCTACCCTACAGTGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
73702852 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
73702879 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
73702906 AGTATTTTTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
73702933 TATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
73702960 GGTAATT
1 GGTAATT
73702967 TTGTAAATTG
Statistics
Matches: 419, Mismatches: 45, Indels: 4
0.90 0.10 0.01
Matches are distributed among these distances:
26 1 0.00
27 417 1.00
28 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:73702980 original size:27 final size:27
Alignment explanation
Indices: 73702950--73703750 Score: 347
Period size: 27 Copynumber: 29.7 Consensus size: 27
73702940 CTACCCTACA
* *
73702950 AGGGTATTTCGGTAATTTTGTAAATTG
1 AGGGTATTTCGGTAATTTTATAAATCG
** * *
73702977 AGGGTAAAAT-GGTAATTCTATAAATCA
1 AGGGT-ATTTCGGTAATTTTATAAATCG
* * *
73703004 ATGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTATAAATCG
* ** * **
73703031 ATGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTCGGTAATTTTATAAATCG
* * * *
73703058 AGGGTATTTCAGTAATTTCACAAAT-T
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *
73703084 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * *
73703111 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * *
73703138 AGGGGTATTTTGGTAATTTTATAAACCA
1 A-GGGTATTTCGGTAATTTTATAAATCG
** * *
73703166 AGGGTATTTTAGTAATTTTACAAA-CC
1 AGGGTATTTCGGTAATTTTATAAATCG
* * * *
73703192 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * *
73703220 AGGGTATTACAGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
*** * *
73703247 AGGGTAAAACGGTAATTCTATAAATTG
1 AGGGTATTTCGGTAATTTTATAAATCG
*** *
73703274 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
** * *
73703301 AGGGTAAAAT-AGTAATTTTGTAAATCG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
*** * *
73703328 AGGGTAAAACGATAATTCTATAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
***
73703355 AGGGTAAAACGGTAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
** *
73703382 AGGGTAAAAT-GGTAATTCTATAAATCG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
** * *
73703409 AGGGTAAAAT-GGTAATTCTGTAAATCG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
** *
73703436 AGGGTAAAAT-GGTAATTCTATAAATCG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
** *
73703463 AGGGTAAAAT-GGTAATTTTGTAAATCG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
*** * * *
73703490 AGGGTAAAACGGTAATTCTGTAAATCA
1 AGGGTATTTCGGTAATTTTATAAATCG
* *
73703517 AGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTATAAATCG
** * **
73703544 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTCGGTAATTTTATAAATCG
* * * *
73703571 AGGGTATTTCAGTAATTTCACAAAT-T
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *
73703597 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * * * *
73703624 AGGGGTATTTTGCTAATTTTGTAAACCA
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * * *
73703652 AAGGTATTTTGGTAATTTTACAAA-CC
1 AGGGTATTTCGGTAATTTTATAAATCG
* * * *
73703678 AGGGGTATTTTGGTGATTTTATAAACCA
1 A-GGGTATTTCGGTAATTTTATAAATCG
** * *
73703706 AGGGTATTTTAGTAATTTTA-AAAACC
1 AGGGTATTTCGGTAATTTTATAAATCG
*
73703732 AGGGGTATTTTGGTAATTT
1 A-GGGTATTTCGGTAATTT
73703751 GGTAAACTAA
Statistics
Matches: 650, Mismatches: 104, Indels: 40
0.82 0.13 0.05
Matches are distributed among these distances:
26 24 0.04
27 610 0.94
28 16 0.02
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTATAAATCG
Found at i:73704894 original size:31 final size:31
Alignment explanation
Indices: 73704839--73704916 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
73704829 CTCAACATAT
* *
73704839 ACTAGGCTGAAGCC-TTTCATAATTCATAAC
1 ACTAGGCCGAAGCCTTTTCAAAATTCATAAC
*
73704869 ACTAGGCCGAAGCCTTTTCAAAATTCATATC
1 ACTAGGCCGAAGCCTTTTCAAAATTCATAAC
*
73704900 ACTGGGCCGAAGCCTTT
1 ACTAGGCCGAAGCCTTT
73704917 ACTGTAAGCG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 13 0.30
31 30 0.70
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (31 bp):
ACTAGGCCGAAGCCTTTTCAAAATTCATAAC
Found at i:73705163 original size:25 final size:25
Alignment explanation
Indices: 73705135--73705206 Score: 126
Period size: 25 Copynumber: 2.9 Consensus size: 25
73705125 CTCTTTTAAT
73705135 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
73705160 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
73705185 AACTGGGGCAAAGCCCTTTTTG
1 AACTGGGGCAAAGCCCTTTTTG
73705207 CACTTCCTCC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:73705277 original size:21 final size:21
Alignment explanation
Indices: 73705252--73705302 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
73705242 TATAATGAGT
*
73705252 ATATCATGTGCATCTCATAAC
1 ATATCATGTGCATATCATAAC
**
73705273 ATATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATAAC
73705294 ATATCATGT
1 ATATCATGT
73705303 ATATCAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (21 bp):
ATATCATGTGCATATCATAAC
Found at i:73705689 original size:21 final size:20
Alignment explanation
Indices: 73705655--73705693 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
73705645 AATGGCCCAA
73705655 AGCCCATTGGGCCCAATTCC
1 AGCCCATTGGGCCCAATTCC
*
73705675 AGCCCCTTGAGGCCCAATT
1 AGCCCATTG-GGCCCAATT
73705694 TACCAACGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.38, G:0.21, T:0.21
Consensus pattern (20 bp):
AGCCCATTGGGCCCAATTCC
Found at i:73711159 original size:154 final size:154
Alignment explanation
Indices: 73710879--73711185 Score: 589
Period size: 154 Copynumber: 2.0 Consensus size: 154
73710869 TACCGAAACA
73710879 CTTAATCATGCACTTATATAATAACTTCGAACATTGACAATTTAAATCAAGCCATTAAATCTTTC
1 CTTAATCATGCACTTATATAATAACTTCGAACATTGACAATTTAAATCAAGCCATTAAATCTTTC
73710944 TCCAAATGTTTCTCACATATATAACAAGCATTTAATCCAATAAAAATATATATCATGACCAAAAT
66 TCCAAATGTTTCTCACATATATAACAAGCATTTAATCCAATAAAAATATATATCATGACCAAAAT
73711009 CAACCAAGTTTAAAACATCATTCG
131 CAACCAAGTTTAAAACATCATTCG
*
73711033 CTTAATCATGCA-TTTTAATAATAACTTCGAACATTGACAATTTAAATCAAGCCATTAAATCTTT
1 CTTAATCATGCACTTAT-ATAATAACTTCGAACATTGACAATTTAAATCAAGCCATTAAATCTTT
73711097 CTCCAAATGTTTCTCACATATATAACAAGCATTTAATCCAATAAAAATATATATCATGACCAAAA
65 CTCCAAATGTTTCTCACATATATAACAAGCATTTAATCCAATAAAAATATATATCATGACCAAAA
73711162 TCAACCAAGTTTAAAACATCATTC
130 TCAACCAAGTTTAAAACATCATTC
73711186 AATATTAAAC
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
153 3 0.02
154 148 0.98
ACGTcount: A:0.42, C:0.20, G:0.06, T:0.32
Consensus pattern (154 bp):
CTTAATCATGCACTTATATAATAACTTCGAACATTGACAATTTAAATCAAGCCATTAAATCTTTC
TCCAAATGTTTCTCACATATATAACAAGCATTTAATCCAATAAAAATATATATCATGACCAAAAT
CAACCAAGTTTAAAACATCATTCG
Found at i:73715352 original size:26 final size:26
Alignment explanation
Indices: 73715322--73715373 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
73715312 AATAGTAGTT
73715322 AAATGTTA-AATATATATGCTGTTATG
1 AAATGTTAGAATATATAT-CTGTTATG
* *
73715348 AAATGTTAGAATTTATATTTGTTATG
1 AAATGTTAGAATATATATCTGTTATG
73715374 TCTGAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (26 bp):
AAATGTTAGAATATATATCTGTTATG
Found at i:73728165 original size:19 final size:20
Alignment explanation
Indices: 73728141--73728187 Score: 80
Period size: 19 Copynumber: 2.5 Consensus size: 20
73728131 AGGTTCAGTT
73728141 TTGGAAAATGCAATTTGT-A
1 TTGGAAAATGCAATTTGTAA
73728160 TTGGAAAATGCAATTTGTAA
1 TTGGAAAATGCAATTTGTAA
73728180 TT-GAAAAT
1 TTGGAAAAT
73728188 CCAACGTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 24 0.89
20 3 0.11
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.36
Consensus pattern (20 bp):
TTGGAAAATGCAATTTGTAA
Found at i:73730330 original size:42 final size:43
Alignment explanation
Indices: 73730229--73730384 Score: 122
Period size: 43 Copynumber: 3.7 Consensus size: 43
73730219 TGTGTTATCG
* * * * *
73730229 TGTAAGACCACGTATGAGACATTGGTATCGATTTGA-GATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCAATAT-ATGA-TTACA
* * * ***
73730273 TTTAAGACCA-TTCTGGGACATTGGCATC-GTATATGATTTTG
1 TGTAAGACCACGTCTGGGACATTGGCATCAATATATGATTACA
* * * *
73730314 TGTGAGACC-CTGTCTGGGATAGTGGCATCAATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCAATATATGATTACA
73730357 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
73730385 TGTACGAGCT
Statistics
Matches: 84, Mismatches: 23, Indels: 11
0.71 0.19 0.09
Matches are distributed among these distances:
41 10 0.12
42 19 0.23
43 45 0.54
44 10 0.12
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCAATATATGATTACA
Found at i:73731514 original size:20 final size:20
Alignment explanation
Indices: 73731489--73731532 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
73731479 AGATAATGAG
73731489 TATGAAATTTTTGATGATAT
1 TATGAAATTTTTGATGATAT
*
73731509 TATGAAATTTTTTATGATAT
1 TATGAAATTTTTGATGATAT
73731529 TATG
1 TATG
73731533 GTTTGATTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (20 bp):
TATGAAATTTTTGATGATAT
Found at i:73734194 original size:44 final size:44
Alignment explanation
Indices: 73734129--73734215 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
73734119 TTGATATCTC
* *
73734129 AAAGTCCATGGTTGTACCATGGCAATTAAGGAAGAATTGACGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
* *
73734173 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGACGG
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGACGG
73734216 TTAAGGATAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 3 0.08
44 35 0.92
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
Found at i:73734411 original size:47 final size:47
Alignment explanation
Indices: 73734352--73734473 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
73734342 GCATTGGCAC
73734352 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
73734399 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
73734446 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
73734474 CCAAGGCATG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:73734416 original size:95 final size:92
Alignment explanation
Indices: 73734218--73734487 Score: 240
Period size: 95 Copynumber: 2.9 Consensus size: 92
73734208 ATTGACGGTT
** * * *
73734218 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGCAAGGATCCCGTGTAAGACCA
1 AAGGATACCATGTAAGACCACATCAAGACATGGCATTGGTAAGACAAGGATACCATGTAAGACCA
* *
73734283 TGTCAAGACATGGCATCGGCATTGATT
66 TGTCAAGACATGGCATCGGCATAGATC
**
73734310 AAGGACT-CCATGTAAGACCACATCAAGATGTGGCATTGGCACTAAGACAAGGATACCATGTAAG
1 AAGGA-TACCATGTAAGACCACATCAAGACATGGCATTGG---TAAGACAAGGATACCATGTAAG
*** * *
73734374 ACCATGTTTGGAACATGGCATTTGGTA-AGA-C
62 ACCATGTCAAG-ACATGGCA-TCGGCATAGATC
** *** * *
73734405 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATGTAAGAC
1 AAGGATACCATGTAAGACCACATCAAG-ACATGGCA-TTGGTAAGACAAGGATACCATGTAAGAC
* *
73734470 CATGCCAAGGCATGGCAT
64 CATGTCAAGACATGGCAT
73734488 TGATAAGTTC
Statistics
Matches: 141, Mismatches: 28, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
92 34 0.24
93 8 0.06
94 28 0.20
95 47 0.33
96 16 0.11
97 8 0.06
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (92 bp):
AAGGATACCATGTAAGACCACATCAAGACATGGCATTGGTAAGACAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATCGGCATAGATC
Found at i:73734486 original size:142 final size:140
Alignment explanation
Indices: 73734218--73734543 Score: 318
Period size: 142 Copynumber: 2.3 Consensus size: 140
73734208 ATTGACGGTT
* * *
73734218 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGCAAGGATCCCGTGTAAGACCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGACAAGGATACCATGTAAGACCA
* * **
73734283 TGTCAAGACATGGCATCGGCATTGATTAAGGACTCCATGTAAGACCACATCAAGATGTGGCATTG
66 TGTCAAGACATGGCATCGGCATAGATTAAGGACTCCATGTAAGACCACACCAAGACATGGCATTG
73734348 GCACTAAGAC
131 GCACTAAGAC
***
73734358 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAAGAC
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAGACAAGGATACCATGTAAGAC
*** * * * ** *
73734423 CATGTTTGGAACATGGCATTTGGTA-AGA-TAAGGA-TATCATGTAAGACCATGCCAAGGCATGG
64 CATGTCAAG-ACATGGCA-TCGGCATAGATTAAGGACT-CCATGTAAGACCACACCAAGACATGG
*
73734485 CATTGATAAGTTCTA-TAAGGC
126 CATTG----G--C-ACTAAGAC
* *
73734506 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTG
73734544 ATGAGTTACT
Statistics
Matches: 149, Mismatches: 25, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
140 24 0.16
141 9 0.06
142 61 0.41
143 10 0.07
144 4 0.03
146 4 0.03
147 8 0.05
148 28 0.19
149 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (140 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGACAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATCGGCATAGATTAAGGACTCCATGTAAGACCACACCAAGACATGGCATTG
GCACTAAGAC
Found at i:73734581 original size:55 final size:54
Alignment explanation
Indices: 73734452--73734648 Score: 263
Period size: 55 Copynumber: 3.6 Consensus size: 54
73734442 TTGGTAAGAT
* * *
73734452 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
73734506 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
73734561 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
73734614 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
73734649 ATGGTAAGTT
Statistics
Matches: 126, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
52 4 0.03
53 33 0.26
54 42 0.33
55 43 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:73747866 original size:717 final size:717
Alignment explanation
Indices: 73746492--73747929 Score: 2876
Period size: 717 Copynumber: 2.0 Consensus size: 717
73746482 CTAATTAACT
73746492 CTCTAGGGTTGCAGTAACTCGATCTATGGATCCCCTTATTAGGTTTCACTCTAATCTGGCAAAAT
1 CTCTAGGGTTGCAGTAACTCGATCTATGGATCCCCTTATTAGGTTTCACTCTAATCTGGCAAAAT
73746557 CTTGTCACCCTATGTCTAGGTGCGCAATCAACTCCGCTTAATTATGACAAATGTACTATTAGGCA
66 CTTGTCACCCTATGTCTAGGTGCGCAATCAACTCCGCTTAATTATGACAAATGTACTATTAGGCA
73746622 GGGTCTATTCCTCCTCTAAATAAGACCTTATCTTGAATCATTATCCTAGAATATCAAAACAAGAA
131 GGGTCTATTCCTCCTCTAAATAAGACCTTATCTTGAATCATTATCCTAGAATATCAAAACAAGAA
73746687 TTAAGAACACATAATTAAGAACAAGTTAAATATTTATCATACGATTCAGAAAATAATAACAAGAT
196 TTAAGAACACATAATTAAGAACAAGTTAAATATTTATCATACGATTCAGAAAATAATAACAAGAT
73746752 CCATCTTAGGTATCATTCCCTTTAGGTATTTAGGGGTTTTAGTTCATAACTAAATAAGAAAACAT
261 CCATCTTAGGTATCATTCCCTTTAGGTATTTAGGGGTTTTAGTTCATAACTAAATAAGAAAACAT
73746817 CTCAGAAGAATAAAGAATACGAAACATAAAGAAAACCCAAAACTCCTGAAGGGAAATTGAGGAGA
326 CTCAGAAGAATAAAGAATACGAAACATAAAGAAAACCCAAAACTCCTGAAGGGAAATTGAGGAGA
73746882 GATCTTCAGTCTTGATGATGAATCCGACTTCTGAGATGGATCAATCAGCTTCCTTGGAGTAATTC
391 GATCTTCAGTCTTGATGATGAATCCGACTTCTGAGATGGATCAATCAGCTTCCTTGGAGTAATTC
73746947 CTTACTCCCTATTCTCCGTCTCCTTTTCTTCCTCCTTTAGGGTGTATTTATAGGCTTTGGAATGC
456 CTTACTCCCTATTCTCCGTCTCCTTTTCTTCCTCCTTTAGGGTGTATTTATAGGCTTTGGAATGC
73747012 CCAAAAACCCACAAAATTAGCCTTTTCCGAATTGGACTCAACTTGGGCTTAGTAGGGACATGCTC
521 CCAAAAACCCACAAAATTAGCCTTTTCCGAATTGGACTCAACTTGGGCTTAGTAGGGACATGCTC
73747077 GTGGCACACACCCGTGTTCGATTACTTCAGGACGTGTTCGAGCTTGCCAAATTGACACTGCTGTA
586 GTGGCACACACCCGTGTTCGATTACTTCAGGACGTGTTCGAGCTTGCCAAATTGACACTGCTGTA
73747142 TTAATTTCGTACATTGGCCTATTTTCTCTATTTTTGGCCCGTTTCTCGTTCCTTTCGCTCTCCTA
651 TTAATTTCGTACATTGGCCTATTTTCTCTATTTTTGGCCCGTTTCTCGTTCCTTTCGCTCTCCTA
73747207 TG
716 TG
73747209 CTCTAGGGTTGCAGTAACTCGATCTATGGATCCCCTTATTAGGTTTCACTCTAATCTGGCAAAAT
1 CTCTAGGGTTGCAGTAACTCGATCTATGGATCCCCTTATTAGGTTTCACTCTAATCTGGCAAAAT
73747274 CTTGTCACCCTATGTCTAGGTGCGCAATCAACTCCGCTTAATTATGACAAATGTACTATTAGGCA
66 CTTGTCACCCTATGTCTAGGTGCGCAATCAACTCCGCTTAATTATGACAAATGTACTATTAGGCA
73747339 GGGTCTATTCCTCCTCTAAATAAGACCTTATCTTGAATCATTATCCTAGAATATCAAAACAAGAA
131 GGGTCTATTCCTCCTCTAAATAAGACCTTATCTTGAATCATTATCCTAGAATATCAAAACAAGAA
73747404 TTAAGAACACATAATTAAGAACAAGTTAAATATTTATCATACGATTCAGAAAATAATAACAAGAT
196 TTAAGAACACATAATTAAGAACAAGTTAAATATTTATCATACGATTCAGAAAATAATAACAAGAT
73747469 CCATCTTAGGTATCATTCCCTTTAGGTATTTAGGGGTTTTAGTTCATAACTAAATAAGAAAACAT
261 CCATCTTAGGTATCATTCCCTTTAGGTATTTAGGGGTTTTAGTTCATAACTAAATAAGAAAACAT
73747534 CTCAGAAGAATAAAGAATACGAAACATAAAGAAAACCCAAAACTCCTGAAGGGAAATTGAGGAGA
326 CTCAGAAGAATAAAGAATACGAAACATAAAGAAAACCCAAAACTCCTGAAGGGAAATTGAGGAGA
73747599 GATCTTCAGTCTTGATGATGAATCCGACTTCTGAGATGGATCAATCAGCTTCCTTGGAGTAATTC
391 GATCTTCAGTCTTGATGATGAATCCGACTTCTGAGATGGATCAATCAGCTTCCTTGGAGTAATTC
73747664 CTTACTCCCTATTCTCCGTCTCCTTTTCTTCCTCCTTTAGGGTGTATTTATAGGCTTTGGAATGC
456 CTTACTCCCTATTCTCCGTCTCCTTTTCTTCCTCCTTTAGGGTGTATTTATAGGCTTTGGAATGC
73747729 CCAAAAACCCACAAAATTAGCCTTTTCCGAATTGGACTCAACTTGGGCTTAGTAGGGACATGCTC
521 CCAAAAACCCACAAAATTAGCCTTTTCCGAATTGGACTCAACTTGGGCTTAGTAGGGACATGCTC
73747794 GTGGCACACACCCGTGTTCGATTACTTCAGGACGTGTTCGAGCTTGCCAAATTGACACTGCTGTA
586 GTGGCACACACCCGTGTTCGATTACTTCAGGACGTGTTCGAGCTTGCCAAATTGACACTGCTGTA
73747859 TTAATTTCGTACATTGGCCTATTTTCTCTATTTTTGGCCCGTTTCTCGTTCCTTTCGCTCTCCTA
651 TTAATTTCGTACATTGGCCTATTTTCTCTATTTTTGGCCCGTTTCTCGTTCCTTTCGCTCTCCTA
73747924 TG
716 TG
73747926 CTCT
1 CTCT
73747930 CCTAAGTATA
Statistics
Matches: 721, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
717 721 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (717 bp):
CTCTAGGGTTGCAGTAACTCGATCTATGGATCCCCTTATTAGGTTTCACTCTAATCTGGCAAAAT
CTTGTCACCCTATGTCTAGGTGCGCAATCAACTCCGCTTAATTATGACAAATGTACTATTAGGCA
GGGTCTATTCCTCCTCTAAATAAGACCTTATCTTGAATCATTATCCTAGAATATCAAAACAAGAA
TTAAGAACACATAATTAAGAACAAGTTAAATATTTATCATACGATTCAGAAAATAATAACAAGAT
CCATCTTAGGTATCATTCCCTTTAGGTATTTAGGGGTTTTAGTTCATAACTAAATAAGAAAACAT
CTCAGAAGAATAAAGAATACGAAACATAAAGAAAACCCAAAACTCCTGAAGGGAAATTGAGGAGA
GATCTTCAGTCTTGATGATGAATCCGACTTCTGAGATGGATCAATCAGCTTCCTTGGAGTAATTC
CTTACTCCCTATTCTCCGTCTCCTTTTCTTCCTCCTTTAGGGTGTATTTATAGGCTTTGGAATGC
CCAAAAACCCACAAAATTAGCCTTTTCCGAATTGGACTCAACTTGGGCTTAGTAGGGACATGCTC
GTGGCACACACCCGTGTTCGATTACTTCAGGACGTGTTCGAGCTTGCCAAATTGACACTGCTGTA
TTAATTTCGTACATTGGCCTATTTTCTCTATTTTTGGCCCGTTTCTCGTTCCTTTCGCTCTCCTA
TG
Found at i:73750398 original size:3 final size:3
Alignment explanation
Indices: 73750390--73750414 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
73750380 TTGTTCCTAA
73750390 AAC AAC AAC AAC AAC AAC AAC AAC A
1 AAC AAC AAC AAC AAC AAC AAC AAC A
73750415 TAATTACATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:73756714 original size:27 final size:27
Alignment explanation
Indices: 73756683--73756860 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73756673 TGAATTGTAC
73756683 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
73756710 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73756736 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
73756764 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
73756792 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73756819 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73756846 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73756861 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73756797 original size:82 final size:81
Alignment explanation
Indices: 73756684--73756839 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73756674 GAATTGTACA
* *
73756684 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
73756748 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
73756765 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
73756830 TGCGAGTTGA
65 TGCGAATTGA
73756840 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:73756851 original size:82 final size:81
Alignment explanation
Indices: 73756680--73756860 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
73756670 GATTGAATTG
* *
73756680 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73756745 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
73756761 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
73756825 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
73756843 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73756861 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:73764216 original size:12 final size:12
Alignment explanation
Indices: 73764199--73764225 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
73764189 ATTCCGAAGT
73764199 ATATATATATAC
1 ATATATATATAC
73764211 ATATATATATAC
1 ATATATATATAC
73764223 ATA
1 ATA
73764226 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:73764736 original size:27 final size:27
Alignment explanation
Indices: 73764705--73764882 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73764695 TAAATTGTAC
73764705 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
73764732 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73764758 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
73764786 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
73764814 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
73764841 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
73764868 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73764883 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:73764819 original size:82 final size:81
Alignment explanation
Indices: 73764706--73764861 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73764696 AAATTGTACA
* *
73764706 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
73764770 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
73764787 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
73764852 TGCGAGTTGA
65 TGCGAATTGA
73764862 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:73764873 original size:82 final size:81
Alignment explanation
Indices: 73764702--73764882 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
73764692 GATTAAATTG
* *
73764702 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73764767 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
73764783 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
73764847 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
73764865 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73764883 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:73766338 original size:33 final size:34
Alignment explanation
Indices: 73766294--73766360 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 34
73766284 GCCCTCATTG
*
73766294 TTACTGTATAGGGCTAAAGCCCAGACT-TTACTA
1 TTACTGAATAGGGCTAAAGCCCAGACTGTTACTA
**
73766327 TTACTGAATAGGGCTCTAGCCCAGACTGTTACTA
1 TTACTGAATAGGGCTAAAGCCCAGACTGTTACTA
73766361 CAAGCATTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 24 0.80
34 6 0.20
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (34 bp):
TTACTGAATAGGGCTAAAGCCCAGACTGTTACTA
Found at i:73767473 original size:16 final size:16
Alignment explanation
Indices: 73767454--73767484 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73767444 CTTCTTCACT
73767454 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
73767470 TACTTACTTACTTAA
1 TACTCACTTACTTAA
73767485 TAAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:73767490 original size:20 final size:20
Alignment explanation
Indices: 73767451--73767490 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
73767441 AAACTTCTTC
* *
73767451 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATAAAAT
*
73767471 ACTTACTTACTTAATAAAAT
1 ACTTACTCACTTAATAAAAT
73767491 TTATTAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATAAAAT
Found at i:73767809 original size:53 final size:54
Alignment explanation
Indices: 73767716--73767930 Score: 172
Period size: 55 Copynumber: 4.0 Consensus size: 54
73767706 TACGTGGTAT
* * * * *
73767716 CCTTTTGAAACTTACC-ATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTG
1 CCTTATGAAACTTACCAAAT-CCATGCCTTGGCATGGTCTTACATGGTATCCTTG
* * * * *
73767770 CCTTATG-AACTCAGCAAATCCACGCCTTGGCATGGTCTTACATGGGA-CCTTTC
1 CCTTATGAAACTTACCAAATCCATGCCTTGGCATGGTCTTACATGGTATCC-TTG
* * * * *
73767823 CCTTATAGAAACTTATC-AATGCCATGTCTTGACATGGTCTTTCATGATATCCTTG
1 CCTTAT-GAAACTTACCAAAT-CCATGCCTTGGCATGGTCTTACATGGTATCCTTG
* * *
73767878 ACTTA-GAAACCTTACCAATTTCCATGCCTT-GCATGGTCTTACGTGGTATCCTT
1 CCTTATGAAA-CTTACCAA-ATCCATGCCTTGGCATGGTCTTACATGGTATCCTT
73767931 AAACCGTAAT
Statistics
Matches: 125, Mismatches: 27, Indels: 18
0.74 0.16 0.11
Matches are distributed among these distances:
52 2 0.02
53 41 0.33
54 36 0.29
55 43 0.34
56 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (54 bp):
CCTTATGAAACTTACCAAATCCATGCCTTGGCATGGTCTTACATGGTATCCTTG
Found at i:73775184 original size:16 final size:16
Alignment explanation
Indices: 73775165--73775195 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73775155 CTTCTTCAAT
73775165 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
73775181 TACTTACTTACTTAA
1 TACTCACTTACTTAA
73775196 TCAAACTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:73775570 original size:55 final size:54
Alignment explanation
Indices: 73775427--73775642 Score: 213
Period size: 55 Copynumber: 4.0 Consensus size: 54
73775417 TACGTGGTAT
* * * * *
73775427 CCTTTTGAAACTTACCATTGCCATGTCTCGACATGGCCTTACATGGTATCCTTG
1 CCTTATGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTG
* * * *
73775481 CCTTATG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTT
1 CCTTATGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTG
* **
73775534 CCTTATAGAAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTG
1 CCTTAT-GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTG
* * * * * *
73775589 ACTTA-AAAACCTTGCCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCTTATGAAA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
73775643 AAACCCTAAT
Statistics
Matches: 133, Mismatches: 23, Indels: 11
0.80 0.14 0.07
Matches are distributed among these distances:
52 2 0.02
53 44 0.33
54 13 0.10
55 72 0.54
56 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTG
Found at i:73790629 original size:50 final size:50
Alignment explanation
Indices: 73790554--73790653 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
73790544 ATGTGTTTAT
73790554 TTATAGTAATGGATCCCGATCGTGACCGAGAGGTAGCTGATGATCTTGAG
1 TTATAGTAATGGATCCCGATCGTGACCGAGAGGTAGCTGATGATCTTGAG
73790604 TTATAGTAATGGATCCCGATCGTGACCGAGAGGTAGCTGATGATCTTGAG
1 TTATAGTAATGGATCCCGATCGTGACCGAGAGGTAGCTGATGATCTTGAG
73790654 AGTGTAGCGC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (50 bp):
TTATAGTAATGGATCCCGATCGTGACCGAGAGGTAGCTGATGATCTTGAG
Found at i:73796990 original size:27 final size:27
Alignment explanation
Indices: 73796959--73797136 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
73796949 TAAATTGTAC
*
73796959 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
73796986 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
73797012 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
73797040 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
73797068 AGCACTAAGTGTGCGAGTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
73797095 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
73797122 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73797137 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:73797073 original size:82 final size:81
Alignment explanation
Indices: 73796960--73797115 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73796950 AAATTGTACA
* *
73796960 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
73797024 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
73797041 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
73797106 TGCGAGTTGA
65 TGCGAATTGA
73797116 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:73797127 original size:82 final size:81
Alignment explanation
Indices: 73796956--73797136 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
73796946 GATTAAATTG
* *
73796956 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73797021 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
73797037 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
73797101 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
73797119 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73797137 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:73800415 original size:70 final size:70
Alignment explanation
Indices: 73800332--73800464 Score: 239
Period size: 70 Copynumber: 1.9 Consensus size: 70
73800322 TCAAGGAATG
*
73800332 TTTTAATAAATGTGAGTATTAAATAAGCTAAATTTGTTATTATAGATCAAGAAGAACGAAATCTG
1 TTTTAATAAATGTGAGTATTAAATAAGCTAAATTTGTTATTATAGATCAAGAAGAACAAAATCTG
73800397 AAGTT
66 AAGTT
* *
73800402 TTTTAATAAATGTGAGTATTAAATAAGCTAATTTTTTTATTATAGATCAAGAAGAACAAAATC
1 TTTTAATAAATGTGAGTATTAAATAAGCTAAATTTGTTATTATAGATCAAGAAGAACAAAATC
73800465 CGGAGTTAGA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
70 60 1.00
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.37
Consensus pattern (70 bp):
TTTTAATAAATGTGAGTATTAAATAAGCTAAATTTGTTATTATAGATCAAGAAGAACAAAATCTG
AAGTT
Found at i:73800908 original size:53 final size:54
Alignment explanation
Indices: 73800728--73800940 Score: 259
Period size: 55 Copynumber: 3.9 Consensus size: 54
73800718 AGGGTTTAAG
* *
73800728 GATACCATGCAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGGCATGGC-ATTGGTAA-GTTTCATAAGGCAAA
* * *
73800783 GATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTTCTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTC-ATAAGGCAAA
* * *
73800838 GGTCCCATGTAAGACCATGCCAAGGCACGGCATTGGTAAG-TTCATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGGCAAA
* * * * * *
73800891 GATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGCTTCAAAAGG
1 GATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGG
73800941 ATACCACGTA
Statistics
Matches: 136, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
53 48 0.35
54 18 0.13
55 70 0.51
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGGCAAA
Found at i:73801480 original size:94 final size:95
Alignment explanation
Indices: 73801318--73801506 Score: 308
Period size: 94 Copynumber: 2.0 Consensus size: 95
73801308 AATGCTTACC
* ** * *
73801318 CCCTTTATTTTCCTTCTTTTTATAGTTTTTTCAAGCTAACTCAGGGATCGTAAAGCATGTTGGAT
1 CCCTTTATTTTCCTTCTTTTTATAGTTTTTTCAAGCTAACTCAGGGATCATAAAGCACATCGAAT
73801383 GTCCGGGCACACTATCACAAGGATTATTTT
66 GTCCGGGCACACTATCACAAGGATTATTTT
* *
73801413 CCCTTTATTTTCCTTC-TTTTATAGTTTTTTCAAGCTAACTCGGGGATCATAAAGTACATCGAAT
1 CCCTTTATTTTCCTTCTTTTTATAGTTTTTTCAAGCTAACTCAGGGATCATAAAGCACATCGAAT
73801477 GTCCGGGCACACTATCACAAGGATTATTTT
66 GTCCGGGCACACTATCACAAGGATTATTTT
73801507 GGTATAGCTA
Statistics
Matches: 87, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
94 71 0.82
95 16 0.18
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (95 bp):
CCCTTTATTTTCCTTCTTTTTATAGTTTTTTCAAGCTAACTCAGGGATCATAAAGCACATCGAAT
GTCCGGGCACACTATCACAAGGATTATTTT
Found at i:73804381 original size:44 final size:43
Alignment explanation
Indices: 73804318--73804475 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
73804308 ATGTGTTATT
*
73804318 GTGTAAGACCACATCTGGGACGTTGGCATCGATTTGAGATTTAC
1 GTGTAAGACCATATCTGGGACGTTGGCATCGATTT-AGATTTAC
* * *
73804362 GTGTAAGACCATGTCTGGGACATTGGCATCG-TATAAGATTT-C
1 GTGTAAGACCATATCTGGGACGTTGGCATCGAT-TTAGATTTAC
* *
73804404 GTGTAAGACTC-TATCTGAGACAG-TGGCATCGATATTTGA-TTAC
1 GTGTAAGAC-CATATCTGGGAC-GTTGGCATCGAT-TTAGATTTAC
* * * *
73804447 ATGTGAGACCATGTCTGGGATGTTGGCAT
1 GTGTAAGACCATATCTGGGACGTTGGCAT
73804476 TGTACAAGAT
Statistics
Matches: 93, Mismatches: 14, Indels: 15
0.76 0.11 0.12
Matches are distributed among these distances:
42 30 0.32
43 34 0.37
44 29 0.31
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCATATCTGGGACGTTGGCATCGATTTAGATTTAC
Found at i:73804431 original size:42 final size:43
Alignment explanation
Indices: 73804318--73804434 Score: 123
Period size: 42 Copynumber: 2.7 Consensus size: 43
73804308 ATGTGTTATT
* * * *
73804318 GTGTAAGACCACATCTGGGAC-GTTGGCATCGATTTGAGATTTAC
1 GTGTAAGACCATATCTGAGACAG-TGGCATCG-TATAAGATTTAC
* * *
73804362 GTGTAAGACCATGTCTGGGACATTGGCATCGTATAAGATTT-C
1 GTGTAAGACCATATCTGAGACAGTGGCATCGTATAAGATTTAC
73804404 GTGTAAGACTC-TATCTGAGACAGTGGCATCG
1 GTGTAAGAC-CATATCTGAGACAGTGGCATCG
73804435 ATATTTGATT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
42 27 0.43
43 9 0.14
44 27 0.43
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATATCTGAGACAGTGGCATCGTATAAGATTTAC
Found at i:73807416 original size:42 final size:42
Alignment explanation
Indices: 73807296--73807417 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
73807286 TATCATACCA
**
73807296 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* *
73807338 ATACCATTAGCCCA-ACTATGGTCTTACATGAAATCTCATATCG
1 ATGCCA-TATCCCAGA-TATGGTCTTACATGAAATCTCATATCG
* * * *
73807381 ATGCCATATCCCAGATAAGGTCTGACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCA
73807418 ACTAACCCTA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 30 0.45
43 37 0.55
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
Found at i:73808023 original size:81 final size:81
Alignment explanation
Indices: 73807888--73808050 Score: 281
Period size: 81 Copynumber: 2.0 Consensus size: 81
73807878 AGCCCACATT
*
73807888 TTTCATGAAATCAGATTTTTACAACCCATTTTACATCTTTTTACAAATAGGTCCTTTTTAGGTAT
1 TTTCATCAAATCAGATTTTTACAACCCATTTTACATCTTTTTACAAATAGGTCCTTTTTAGGTAT
73807953 TTTCATGAAAAATCAC
66 TTTCATGAAAAATCAC
* * * *
73807969 TTTCATCAAATTATATTTTTACTACTCATTTTACATCTTTTTACAAATAGGTCCTTTTTAGGTAT
1 TTTCATCAAATCAGATTTTTACAACCCATTTTACATCTTTTTACAAATAGGTCCTTTTTAGGTAT
73808034 TTTCATGAAAAATCAC
66 TTTCATGAAAAATCAC
73808050 T
1 T
73808051 AGTAAAAGTT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.31, C:0.17, G:0.07, T:0.45
Consensus pattern (81 bp):
TTTCATCAAATCAGATTTTTACAACCCATTTTACATCTTTTTACAAATAGGTCCTTTTTAGGTAT
TTTCATGAAAAATCAC
Found at i:73813387 original size:48 final size:48
Alignment explanation
Indices: 73813335--73813472 Score: 177
Period size: 48 Copynumber: 2.9 Consensus size: 48
73813325 CATCAATGTG
*
73813335 TGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACCTA
1 TGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATA
* * * *
73813383 TGATCCTATGTAAAACCATGTCTGCGACATGGCATTGGCATCGATATG
1 TGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATA
* * * * * *
73813431 TGATCCCATGTATGACCATATCTAGGATATGGCATTAGCATC
1 TGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATC
73813473 CTACCATGTT
Statistics
Matches: 77, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 77 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
TGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATA
Found at i:73814889 original size:20 final size:21
Alignment explanation
Indices: 73814860--73814898 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
73814850 TGTTTCATGA
73814860 AAATTCTTCT-AAGTTCTCCT
1 AAATTCTTCTAAAGTTCTCCT
*
73814880 AAATTTTTCTAAAGTTCTC
1 AAATTCTTCTAAAGTTCTC
73814899 TATTTAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.28, C:0.21, G:0.05, T:0.46
Consensus pattern (21 bp):
AAATTCTTCTAAAGTTCTCCT
Found at i:73816069 original size:39 final size:39
Alignment explanation
Indices: 73816026--73816173 Score: 118
Period size: 39 Copynumber: 3.8 Consensus size: 39
73816016 ACCAGCTCGA
* *
73816026 AGCCTGCGGGACTTT-AGCCCGGACATATTTCCAGTACGT
1 AGCCTGC-GGACTTTAAGCCCGGACATAATTCCAGTACAT
* **
73816065 AGCCTGCGGACTTTAAGTCCGGTTATAATTCCAGTACAT
1 AGCCTGCGGACTTTAAGCCCGGACATAATTCCAGTACAT
* ** * * **
73816104 AGCCTGCAGACCCTAAGTCCGGATATAATTCCAACACAT
1 AGCCTGCGGACTTTAAGCCCGGACATAATTCCAGTACAT
* * ** * *
73816143 GGCCTGCAGACCCTAAGTCCGGATATAATTC
1 AGCCTGCGGACTTTAAGCCCGGACATAATTC
73816174 ACTGAATGTC
Statistics
Matches: 96, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 7 0.07
39 89 0.93
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AGCCTGCGGACTTTAAGCCCGGACATAATTCCAGTACAT
Found at i:73820217 original size:42 final size:42
Alignment explanation
Indices: 73820171--73820272 Score: 105
Period size: 48 Copynumber: 2.3 Consensus size: 42
73820161 TACGGGACCT
73820171 CATATCGATGCCATAACCGAGACATGGTCTTACACTGGCACA
1 CATATCGATGCCATAACCGAGACATGGTCTTACACTGGCACA
** * *
73820213 CATATCAACGCCAATGCCATGTCCTAGACATGGTCTTACATTGGCACA
1 CATAT---CG---ATGCCATAACCGAGACATGGTCTTACACTGGCACA
*
73820261 CATATCAATGCC
1 CATATCGATGCC
73820273 GATGCCATGT
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
42 10 0.20
45 3 0.06
48 36 0.73
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (42 bp):
CATATCGATGCCATAACCGAGACATGGTCTTACACTGGCACA
Found at i:73820249 original size:48 final size:48
Alignment explanation
Indices: 73820190--73820301 Score: 188
Period size: 48 Copynumber: 2.3 Consensus size: 48
73820180 GCCATAACCG
*
73820190 AGACATGGTCTTACACTGGCACACATATCAACGCCAATGCCATGTCCT
1 AGACATGGTCTTACACTGGCACACATATCAACGCCAATGCCATGTCCC
* * *
73820238 AGACATGGTCTTACATTGGCACACATATCAATGCCGATGCCATGTCCC
1 AGACATGGTCTTACACTGGCACACATATCAACGCCAATGCCATGTCCC
73820286 AGACATGGTCTTACAC
1 AGACATGGTCTTACAC
73820302 GGGATCTCAT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (48 bp):
AGACATGGTCTTACACTGGCACACATATCAACGCCAATGCCATGTCCC
Found at i:73825441 original size:257 final size:258
Alignment explanation
Indices: 73824665--73825444 Score: 1332
Period size: 258 Copynumber: 3.0 Consensus size: 258
73824655 CAATACCAAG
* *
73824665 AATTACATCAAATTCGTCAAATGGTAATAGAATGAGATTAGCCGGAAAATAATGACCTCTAATCA
1 AATTACATCAAATTCGTCAAATGGTAATAGCATGAGATTAGCTGGAAAATAATGACCTCTAATCA
*
73824730 TTAAAGGGCAATTTTTACACACTTTATCAAATAACACATACTTGCCTAACGGGTTTGACACCTTT
66 TTAAAGGGCAATTTTTACACACTTTATCAACTAACACATACTTGCCTAACGGGTTTGACACCTTT
* **
73824795 ATTACGAACTCAGTAGATTCAACAAACAAGTTCATATCAAACATTAACTTCATGCAAATATATGA
131 ATTACGAACTCAGTAGATTCAACAAACAAGTTCATATCAGACACCAACTTCATGCAAATATATGA
* *
73824860 ATGGGTAAACCCCGGATCAATCAAAGCAACAATAGAAGTTTCATAGATAGAAAATGTACCTGT
196 ATGGGTAGACCCCGGATCAATCAAAGCAACAATAGAAGTTTCATAGATAGAAAATGTACCCGT
* * *
73824923 AATTACATCAAATTCGTCAAATGGTAATATCATGAGATTAG-TCGGAAAATAATGACATCTACTC
1 AATTACATCAAATTCGTCAAATGGTAATAGCATGAGATTAGCT-GGAAAATAATGACCTCTAATC
* * *
73824987 ATAAAATGG-AATTTTTTACACACTTTATCAACTAACACATACTTGCCTAATGGGTTTGACACCT
65 ATTAAAGGGCAA-TTTTTACACACTTTATCAACTAACACATACTTGCCTAACGGGTTTGACACCT
73825051 TTATTACGAACTCAGTAGATTCAACAAACAAGTTCATATCAGACACCAACTTCATGCAAATATAT
129 TTATTACGAACTCAGTAGATTCAACAAACAAGTTCATATCAGACACCAACTTCATGCAAATATAT
* *
73825116 GAATGGGTAGACCCCGGATCAATCAAAGCAATAATAGAAGTTTCATAGATAGAAAATGTACTCGT
194 GAATGGGTAGACCCCGGATCAATCAAAGCAACAATAGAAGTTTCATAGATAGAAAATGTACCCGT
* *
73825181 AATTACATCAAATTCGTCAAACGGTAATAGCATGAGATTAGCTGGAAAATATTGACCTCTAATCA
1 AATTACATCAAATTCGTCAAATGGTAATAGCATGAGATTAGCTGGAAAATAATGACCTCTAATCA
73825246 TTAAAGGGCAATTTTTACACACTTTATCAACTAACACATACTTGCCTAACGGGTTTGACACCTTT
66 TTAAAGGGCAATTTTTACACACTTTATCAACTAACACATACTTGCCTAACGGGTTTGACACCTTT
* *
73825311 A-TACGAACTCAGTAGATTCAACAAACAAGTTCATATCAGACACCAACTTTATGCAAATATACGA
131 ATTACGAACTCAGTAGATTCAACAAACAAGTTCATATCAGACACCAACTTCATGCAAATATATGA
*
73825375 ATGGGTAGACCCCGGATCAATCAAAGCAACAATAGAAGTTTCATAAATAGAAAATGTACCCGT
196 ATGGGTAGACCCCGGATCAATCAAAGCAACAATAGAAGTTTCATAGATAGAAAATGTACCCGT
73825438 AATTACA
1 AATTACA
73825445 GCAGGACACG
Statistics
Matches: 489, Mismatches: 29, Indels: 9
0.93 0.06 0.02
Matches are distributed among these distances:
257 130 0.27
258 356 0.73
259 3 0.01
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.28
Consensus pattern (258 bp):
AATTACATCAAATTCGTCAAATGGTAATAGCATGAGATTAGCTGGAAAATAATGACCTCTAATCA
TTAAAGGGCAATTTTTACACACTTTATCAACTAACACATACTTGCCTAACGGGTTTGACACCTTT
ATTACGAACTCAGTAGATTCAACAAACAAGTTCATATCAGACACCAACTTCATGCAAATATATGA
ATGGGTAGACCCCGGATCAATCAAAGCAACAATAGAAGTTTCATAGATAGAAAATGTACCCGT
Found at i:73828489 original size:42 final size:42
Alignment explanation
Indices: 73828430--73828510 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
73828420 GTGTCGATGC
* * **
73828430 CATGTCCCAGATATGGTCTTATACGGGACCTCATATCAATTT
1 CATGTCCCAGACATGGTCTTACACGAAACCTCATATCAATTT
* *
73828472 CATGTCCTAGACATGGTCTTACACGAAATCTCATATCAA
1 CATGTCCCAGACATGGTCTTACACGAAACCTCATATCAA
73828511 CGCCATATCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
CATGTCCCAGACATGGTCTTACACGAAACCTCATATCAATTT
Found at i:73828606 original size:48 final size:48
Alignment explanation
Indices: 73828512--73828679 Score: 169
Period size: 48 Copynumber: 3.5 Consensus size: 48
73828502 TCATATCAAC
* * ** * * *
73828512 GCCATATCCCAAATATGGTCTTAC-ATGAAATCACATACCGATGCCGAT
1 GCCATATTCCAGATATGGTCTTACAATGGCA-CACATATCAACGCCGAT
* * *
73828560 GCCATATTCCAGATATGGTCTTACACTGGCACATATATTAACGCCGAT
1 GCCATATTCCAGATATGGTCTTACAATGGCACACATATCAACGCCGAT
* * *
73828608 GCCAT-GTCCTAGACATGGTCTTACAATGGCACACATATCAACGTCGAT
1 GCCATATTCC-AGATATGGTCTTACAATGGCACACATATCAACGCCGAT
* *
73828656 GCCATATCCCAGATAGGGTCTTAC
1 GCCATATTCCAGATATGGTCTTAC
73828680 GTGGGATCTC
Statistics
Matches: 97, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
47 3 0.03
48 89 0.92
49 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (48 bp):
GCCATATTCCAGATATGGTCTTACAATGGCACACATATCAACGCCGAT
Found at i:73837658 original size:17 final size:17
Alignment explanation
Indices: 73837636--73837668 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
73837626 AGCTGTCATA
73837636 TGAATTAAATTAATTTT
1 TGAATTAAATTAATTTT
*
73837653 TGAATTAATTTAATTT
1 TGAATTAAATTAATTT
73837669 GATAGTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
TGAATTAAATTAATTTT
Found at i:73837894 original size:18 final size:18
Alignment explanation
Indices: 73837871--73837906 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
73837861 GGAAAGAATA
73837871 TAATTAATATATGAATTT
1 TAATTAATATATGAATTT
73837889 TAATTAATATATGAATTT
1 TAATTAATATATGAATTT
73837907 GATTCATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (18 bp):
TAATTAATATATGAATTT
Found at i:73837897 original size:156 final size:156
Alignment explanation
Indices: 73837734--73838044 Score: 525
Period size: 156 Copynumber: 2.0 Consensus size: 156
73837724 ACATAGATAC
* **
73837734 AATTAATATATGAATTTGATTCATACAAATTATTAATTGTATATATTTTACTTAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
* * *
73837799 TAAATAGTT-TAATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGG
66 TAAATAGTTAT-ATTAATTAATTTCAGCCAAAATATAAAAGACAAGAAAATTAATATTCTTTTAG
73837863 AAAGAATATAATTAATATATGAATTTT
130 AAAGAATATAATTAATATATGAATTTT
*
73837890 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGATTTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
* *
73837955 TAAATAGTTATATTAATTAATTTCGGCCAAAATATAAAAGACAAGGAAATTAATATTCTTTTAGA
66 TAAATAGTTATATTAATTAATTTCAGCCAAAATATAAAAGACAAGAAAATTAATATTCTTTTAGA
73838020 AAGAATATAATTAATATATGAATTT
131 AAGAATATAATTAATATATGAATTT
73838045 GATTCATACA
Statistics
Matches: 145, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
156 144 0.99
157 1 0.01
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (156 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
TAAATAGTTATATTAATTAATTTCAGCCAAAATATAAAAGACAAGAAAATTAATATTCTTTTAGA
AAGAATATAATTAATATATGAATTTT
Found at i:73838398 original size:137 final size:138
Alignment explanation
Indices: 73837889--73838441 Score: 823
Period size: 137 Copynumber: 4.0 Consensus size: 138
73837879 ATATGAATTT
* *
73837889 TAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGATTTTATTAAT
1 TAATTAATATATGAATTTGATTCATACAAAATATTAATTATATATATTTTACCGAATTTATTAAT
* * *
73837954 ATAAATAGTTATATTAATTAATTTCGGCCAAAATATAAAAGACAA-GGAAATTAATATTCTTTTA
66 ATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGA-AATGGAAATTAATATTCTTTTA
73838018 GAAAGAATA
130 GAAAGAATA
* * * *
73838027 TAATTAATATATGAATTTGATTCATACAAAATATTTAATTGTATACATTTTATCGAATTCATTAA
1 TAATTAATATATGAATTTGATTCATACAAAATA-TTAATTATATATATTTTACCGAATTTATTAA
* * * ** * *
73838092 TATAAATAATTCTATTAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAAT-TT-TTTTG
65 TATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGGAAATTAATATTCTTTTA
73838155 GAAAGAATA
130 GAAAGAATA
73838164 TAATTAATATATGAATTTGATTCATACAAAATATTAATTATATATA--TTACCGAATTTATTAAT
1 TAATTAATATATGAATTTGATTCATACAAAATATTAATTATATATATTTTACCGAATTTATTAAT
*
73838227 ATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAA-AAATGAAAATTAATATTCTTTTAG
66 ATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGGAAATTAATATTCTTTTAG
*
73838291 AAATAATA
131 AAAGAATA
**
73838299 TAATTAATATATGAATTTGATTCATACAAAATATTAATTATATATATTTTACAAAATTTATTAAT
1 TAATTAATATATGAATTTGATTCATACAAAATATTAATTATATATATTTTACCGAATTTATTAAT
* *
73838364 ATAAACATTTATATTAATTAATTTCAGTCAAAATATAAAA-AATATGGAGATTAATATTCTTTTA
66 ATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGAA-ATGGAAATTAATATTCTTTTA
*
73838428 AAAAGAATA
130 GAAAGAATA
73838437 TAATT
1 TAATT
73838442 CATTTTTCTA
Statistics
Matches: 378, Mismatches: 30, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
133 12 0.03
134 52 0.14
135 58 0.15
136 11 0.03
137 102 0.27
138 67 0.18
139 76 0.20
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (138 bp):
TAATTAATATATGAATTTGATTCATACAAAATATTAATTATATATATTTTACCGAATTTATTAAT
ATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGGAAATTAATATTCTTTTAG
AAAGAATA
Found at i:73839460 original size:13 final size:13
Alignment explanation
Indices: 73839442--73839471 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
73839432 AAAGGCTTTT
73839442 GAAAAGTATGGTA
1 GAAAAGTATGGTA
73839455 GAAAAGTATGGTA
1 GAAAAGTATGGTA
73839468 GAAA
1 GAAA
73839472 GTGAAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.30, T:0.20
Consensus pattern (13 bp):
GAAAAGTATGGTA
Found at i:73839709 original size:27 final size:25
Alignment explanation
Indices: 73839687--73839742 Score: 67
Period size: 28 Copynumber: 2.1 Consensus size: 25
73839677 AAAATTAATG
73839687 ATATATAAAATATTTTAATAATTAA
1 ATATATAAAATATTTTAATAATTAA
* *
73839712 ATATAATCAATAATATTTAAATAATTTA
1 ATAT-AT-AA-AATATTTTAATAATTAA
73839740 ATA
1 ATA
73839743 CAATGATACA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 4 0.15
26 2 0.08
27 2 0.08
28 18 0.69
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (25 bp):
ATATATAAAATATTTTAATAATTAA
Found at i:73851011 original size:12 final size:12
Alignment explanation
Indices: 73850996--73851021 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73850986 ATACAATTAA
73850996 AAATATTAAAAC
1 AAATATTAAAAC
73851008 AAATATTAAAAC
1 AAATATTAAAAC
73851020 AA
1 AA
73851022 GAAACAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATATTAAAAC
Found at i:73852464 original size:43 final size:43
Alignment explanation
Indices: 73852415--73852500 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
73852405 TCATATCTCA
73852415 TTTCTCATCTCATAACCAATTCTCATATTTGCCATTTCAATAT
1 TTTCTCATCTCATAACCAATTCTCATATTTGCCATTTCAATAT
** * *
73852458 TTTCTCATCTCATATTCATTTCTCATATTTGTCATTTCAATAT
1 TTTCTCATCTCATAACCAATTCTCATATTTGCCATTTCAATAT
73852501 CAATCACATG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.26, C:0.23, G:0.02, T:0.49
Consensus pattern (43 bp):
TTTCTCATCTCATAACCAATTCTCATATTTGCCATTTCAATAT
Found at i:73853202 original size:19 final size:18
Alignment explanation
Indices: 73853162--73853202 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
73853152 AATATTACAC
*
73853162 ATTTCAATTTCACATTAA
1 ATTTCAATTTCACACTAA
*
73853180 ATTTCAATTTTCACACTAT
1 ATTTCAA-TTTCACACTAA
73853199 ATTT
1 ATTT
73853203 TGCTTATTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTCAATTTCACACTAA
Found at i:73861455 original size:47 final size:47
Alignment explanation
Indices: 73861348--73861588 Score: 374
Period size: 47 Copynumber: 5.1 Consensus size: 47
73861338 GAAATGATAG
*
73861348 TAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
73861397 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73861444 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73861491 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *** * * * *
73861538 CAGGGCCGGGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
73861585 TAAG
1 TAAG
73861589 TCCCGAAGGG
Statistics
Matches: 180, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 145 0.81
49 35 0.19
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:73861763 original size:37 final size:37
Alignment explanation
Indices: 73861707--73861785 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
73861697 CCGAGCTCTA
* * *
73861707 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
73861744 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
73861781 AAGAC
1 AAGAC
73861786 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:73863242 original size:40 final size:40
Alignment explanation
Indices: 73862999--73863230 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
73862989 GAGAATTGAG
73862999 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
73863039 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
73863079 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
73863119 AGTGATATATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
73863159 AGTGATATATCCAGGTTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
73863199 GGTGTTATATTCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
73863231 ATCATGCTGG
Statistics
Matches: 176, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 176 1.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:73865009 original size:86 final size:86
Alignment explanation
Indices: 73864864--73865044 Score: 353
Period size: 86 Copynumber: 2.1 Consensus size: 86
73864854 GGCCGGCCAT
73864864 GAGCATGGGTGGACAAGATGTTATGGCTAAAAAACATGTCATAAACATGTTGGGGTAGTGCATTA
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAAACATGTCATAAACATGTTGGGGTAGTGCATTA
*
73864929 TGTAAGGATTAATAAAATAAA
66 TGTAAGAATTAATAAAATAAA
73864950 GAGCATGGGTGGACAAGATGTTATGGCTAAAAAACATGTCATAAACATGTTGGGGTAGTGCATTA
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAAACATGTCATAAACATGTTGGGGTAGTGCATTA
73865015 TGTAAGAATTAATAAAATAAA
66 TGTAAGAATTAATAAAATAAA
73865036 GAGCATGGG
1 GAGCATGGG
73865045 CAATAAAATA
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 94 1.00
ACGTcount: A:0.39, C:0.08, G:0.27, T:0.26
Consensus pattern (86 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAAACATGTCATAAACATGTTGGGGTAGTGCATTA
TGTAAGAATTAATAAAATAAA
Found at i:73867395 original size:47 final size:47
Alignment explanation
Indices: 73867344--73867722 Score: 634
Period size: 47 Copynumber: 8.1 Consensus size: 47
73867334 TTAGGATTTT
* *
73867344 ATGTGATGGATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
73867391 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
73867438 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
73867485 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
73867532 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
73867579 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
73867626 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * * * * *
73867673 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCA
73867720 ATG
1 ATG
73867723 CGAAATGTGT
Statistics
Matches: 318, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 315 0.99
48 3 0.01
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:73867752 original size:46 final size:46
Alignment explanation
Indices: 73867696--73867832 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 46
73867686 GGAAGTGTAT
73867696 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
73867742 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
73867788 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
73867833 TGTATATATA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 83 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:73870783 original size:27 final size:27
Alignment explanation
Indices: 73870748--73870813 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
73870738 CCAGCACAAC
* * * *
73870748 ATATATGGCAAAGCCACTAGTAATAGT
1 ATATGTGGCAAAGCCACCAATAATAGA
73870775 ATATGTGGCAAAGCCACCAATAATAGA
1 ATATGTGGCAAAGCCACCAATAATAGA
73870802 ATATGTGGCAAA
1 ATATGTGGCAAA
73870814 ACCATCAGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (27 bp):
ATATGTGGCAAAGCCACCAATAATAGA
Found at i:73880847 original size:45 final size:45
Alignment explanation
Indices: 73880783--73880912 Score: 183
Period size: 45 Copynumber: 2.9 Consensus size: 45
73880773 GTTGTACAGT
* **
73880783 ATTATTCGGGCCTTGGAGCCTAGCAGGCTATAATGCTGGTGAGAC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGAC
* *
73880828 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGAC
* *
73880873 ATTTTTCGGGCC-TCGAGCCTAGCAGG-TAAAATGCCAGTGA
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGA
73880913 ATAAATTCGG
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
43 13 0.17
44 13 0.17
45 52 0.67
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAGAC
Found at i:73881755 original size:27 final size:26
Alignment explanation
Indices: 73881718--73881779 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 26
73881708 GGGTGTTACA
*
73881718 AGTACAATATATATGGCAAAGCCAAT
1 AGTACAGTATATATGGCAAAGCCAAT
* *
73881744 AGTAACAGTATATGTGGCAAAGCCACT
1 AGT-ACAGTATATATGGCAAAGCCAAT
73881771 AGTACAGTA
1 AGTACAGTA
73881780 CACTTCCTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 9 0.28
27 23 0.72
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (26 bp):
AGTACAGTATATATGGCAAAGCCAAT
Found at i:73884267 original size:40 final size:40
Alignment explanation
Indices: 73884167--73884338 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
73884157 GCTCCTCGTT
* * *
73884167 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
73884207 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
73884246 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
73884286 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
73884326 CAAATGCCTTCGG
1 CAAATGCCTTCGG
73884339 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:73884351 original size:80 final size:79
Alignment explanation
Indices: 73884167--73884381 Score: 227
Period size: 80 Copynumber: 2.7 Consensus size: 79
73884157 GCTCCTCGTT
* * *
73884167 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGA
73884232 TTTAATAACTCGCA
66 TTTAATAACTCGCA
* * * * * *
73884246 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG
* *
73884311 AATTT-GTATCTCGCA
65 -ATTTAATAACTCGCA
* * * * * *
73884326 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGAC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAGGCCTTCGGGAC
73884382 TTAGCCCGTG
Statistics
Matches: 110, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
79 38 0.35
80 65 0.59
81 7 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGA
TTTAATAACTCGCA
Found at i:73887722 original size:21 final size:23
Alignment explanation
Indices: 73887696--73887747 Score: 90
Period size: 21 Copynumber: 2.3 Consensus size: 23
73887686 GGTAAACAGT
73887696 GTTAGAGAACTTATAGATTT-G-
1 GTTAGAGAACTTATAGATTTGGC
73887717 GTTAGAGAACTTATAGATTTGGC
1 GTTAGAGAACTTATAGATTTGGC
73887740 GTTAGAGA
1 GTTAGAGA
73887748 CTTGGTATGC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 20 0.69
22 1 0.03
23 8 0.28
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.35
Consensus pattern (23 bp):
GTTAGAGAACTTATAGATTTGGC
Found at i:73889889 original size:38 final size:37
Alignment explanation
Indices: 73889846--73889923 Score: 120
Period size: 38 Copynumber: 2.1 Consensus size: 37
73889836 ACATCATGGG
*
73889846 GAAAGAGTCACCATTCTGCAATCACAGAACACTAAGA
1 GAAAGAGTCACCATTCGGCAATCACAGAACACTAAGA
* *
73889883 NGAAAGAGTCACCTTTCGGCAATCACAGAACACTAAAA
1 -GAAAGAGTCACCATTCGGCAATCACAGAACACTAAGA
73889921 GAA
1 GAA
73889924 GAAGTATTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
37 3 0.08
38 34 0.92
ACGTcount: A:0.44, C:0.23, G:0.17, T:0.15
Consensus pattern (37 bp):
GAAAGAGTCACCATTCGGCAATCACAGAACACTAAGA
Found at i:73891962 original size:25 final size:25
Alignment explanation
Indices: 73891934--73891985 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
73891924 ATATTGATAC
73891934 TTGATTTTAGAAATGGTAAAATTTA
1 TTGATTTTAGAAATGGTAAAATTTA
73891959 TTGATTTTAGAAATGGTAAAATTTA
1 TTGATTTTAGAAATGGTAAAATTTA
73891984 TT
1 TT
73891986 TTTAAAAGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (25 bp):
TTGATTTTAGAAATGGTAAAATTTA
Found at i:73896053 original size:49 final size:49
Alignment explanation
Indices: 73895981--73896167 Score: 220
Period size: 49 Copynumber: 3.8 Consensus size: 49
73895971 TGAGGTCACG
73895981 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * *
73896030 TGTGTAGTACTAAGTGCAGGCTACTA--TGCTACCCA-AAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTG-TA-CCAGATAA-T-TGGTCGCA
* *
73896080 TGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGACT-GTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAATTGGTCGCA
* * *
73896129 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
73896168 GCTTCAGCTA
Statistics
Matches: 115, Mismatches: 14, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
47 2 0.02
48 6 0.05
49 68 0.59
50 34 0.30
51 3 0.03
52 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:73896150 original size:99 final size:100
Alignment explanation
Indices: 73895976--73896162 Score: 324
Period size: 99 Copynumber: 1.9 Consensus size: 100
73895966 TATTGTGAGG
*
73895976 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
73896041 AAGTGCAGGCTACTATGC-TACCCAAAAACTATGA
66 AAGTGCAGGCTACTATGCGTACCCAAAAACTATGA
*
73896075 TCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGACT-GTTGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGA-TAATTGGTCGCATGTGTAGTAC
*
73896139 TAAGTGTAGGCTACTATGCGTACC
65 TAAGTGCAGGCTACTATGCGTACC
73896163 AGATAGCTTC
Statistics
Matches: 83, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
99 78 0.94
100 5 0.06
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCAAAAACTATGA
Found at i:73904912 original size:24 final size:20
Alignment explanation
Indices: 73904880--73904924 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 20
73904870 ATCTATTTAA
73904880 TAAACTGTGTATGATTAATATGT
1 TAAACTGTG--TGATT-ATATGT
73904903 TAAACCTGTGTGATTATATGT
1 TAAA-CTGTGTGATTATATGT
73904924 T
1 T
73904925 CACCCTAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 7 0.33
22 5 0.24
23 4 0.19
24 5 0.24
ACGTcount: A:0.31, C:0.07, G:0.18, T:0.44
Consensus pattern (20 bp):
TAAACTGTGTGATTATATGT
Found at i:73905155 original size:16 final size:17
Alignment explanation
Indices: 73905122--73905155 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
73905112 TCAAAAGTAA
*
73905122 AAAATATTTTGATTTTG
1 AAAATATTCTGATTTTG
73905139 AAAATATTCTG-TTTTG
1 AAAATATTCTGATTTTG
73905155 A
1 A
73905156 TAAAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.12, T:0.50
Consensus pattern (17 bp):
AAAATATTCTGATTTTG
Found at i:73907370 original size:51 final size:51
Alignment explanation
Indices: 73907293--73907440 Score: 244
Period size: 51 Copynumber: 2.9 Consensus size: 51
73907283 CGGATACACG
*
73907293 GTGGCCTTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAA
* *
73907344 GTGGCCTTCACATAGTACCATACTTGTGTCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
*
73907395 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAACTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
73907441 CTAAGGTTCA
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 1 0.01
51 89 0.99
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.32
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:73914401 original size:27 final size:27
Alignment explanation
Indices: 73914370--73914547 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
73914360 TAAATTGTAC
*
73914370 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
73914397 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
73914423 ATGCACTAAGTGTGCGGATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
73914451 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
73914479 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
73914506 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
73914533 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73914548 GGCTCAATAA
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 101 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:73914484 original size:82 final size:81
Alignment explanation
Indices: 73914371--73914520 Score: 212
Period size: 82 Copynumber: 1.8 Consensus size: 81
73914361 AAATTGTACA
* * * *
73914371 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
73914435 TGCGGATTGACCATGCG
65 TGCGGATTGACCATGCG
** *
73914452 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
73914517 TGCG
65 TGCG
73914521 AGTTGATTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 15 0.25
82 44 0.73
83 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGGATTGACCATGCG
Found at i:73914538 original size:82 final size:81
Alignment explanation
Indices: 73914367--73914547 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
73914357 GATTAAATTG
* * * *
73914367 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73914432 GTGTGCGGATTGACCA
66 GTGTGCGGATTGACCA
* * ** *
73914448 TGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
**
73914512 AAGTGTGC-GAGTTGATTA
64 AAGTGTGCGGA-TTGACCA
* *
73914530 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73914548 GGCTCAATAA
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
81 20 0.24
82 62 0.76
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGGATTGACCA
Found at i:73915534 original size:200 final size:200
Alignment explanation
Indices: 73915191--73915590 Score: 782
Period size: 200 Copynumber: 2.0 Consensus size: 200
73915181 TTTAAGCCAT
73915191 GCGAAAATGGCACGAATGTTCGATTGAATTGGATCAAGGGTAGGCATGAAATGGACCTAGTTACT
1 GCGAAAATGGCACGAATGTTCGATTGAATTGGATCAAGGGTAGGCATGAAATGGACCTAGTTACT
73915256 TTCGTAACAGATGCTGGCAGCAGCAGTGTCATGAGATTGAAAAATCACTAAAAATAGTGGGAGTG
66 TTCGTAACAGATGCTGGCAGCAGCAGTGTCATGAGATTGAAAAATCACTAAAAATAGTGGGAGTG
73915321 GAATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGCTTTCATGAGGAAGTAACA
131 GAATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGCTTTCATGAGGAAGTAACA
73915386 AAAAG
196 AAAAG
73915391 GCGAAAATGGCACGAATGTTCGATTGAATTGGATCAAGGGTAGGCATGAAATGGACCTAGTTACT
1 GCGAAAATGGCACGAATGTTCGATTGAATTGGATCAAGGGTAGGCATGAAATGGACCTAGTTACT
*
73915456 TTCGTAACAGATGCTGGCAGCAGCAGTGTCATGAGATTGAAAAATCACTAAAAATATTGGGAGTG
66 TTCGTAACAGATGCTGGCAGCAGCAGTGTCATGAGATTGAAAAATCACTAAAAATAGTGGGAGTG
*
73915521 GAATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGCTTTCATGAGGAAGTAACG
131 GAATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGCTTTCATGAGGAAGTAACA
73915586 AAAAG
196 AAAAG
73915591 ATCATATGGG
Statistics
Matches: 198, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 198 1.00
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.26
Consensus pattern (200 bp):
GCGAAAATGGCACGAATGTTCGATTGAATTGGATCAAGGGTAGGCATGAAATGGACCTAGTTACT
TTCGTAACAGATGCTGGCAGCAGCAGTGTCATGAGATTGAAAAATCACTAAAAATAGTGGGAGTG
GAATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGCTTTCATGAGGAAGTAACA
AAAAG
Found at i:73916099 original size:211 final size:211
Alignment explanation
Indices: 73915735--73916357 Score: 1122
Period size: 211 Copynumber: 3.0 Consensus size: 211
73915725 TGCAGATTCC
73915735 TCTCTGAGTCTAGTTTTCATAGAAACAAACGGAAACAGTATTGAAGCCCCGTGCAGGGAGATATC
1 TCTCTGAGTCTAGTTTTCATAGAAACAAACGGAAACAGTATTGAAGCCCCGTGCAGGGAGATATC
73915800 CCAGTCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGGGAATTTGACTAATAAA
66 CCAGTCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGGGAATTTGACTAATAAA
73915865 CTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTT
131 CTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTT
73915930 TCTTGGAAAAATTACT
196 TCTTGGAAAAATTACT
*
73915946 TCTCTGAGTCTAGTTTTCATAGAAACAAACGGCAACAGTATTGAAGCCCCGTGCAGGGAGATATC
1 TCTCTGAGTCTAGTTTTCATAGAAACAAACGGAAACAGTATTGAAGCCCCGTGCAGGGAGATATC
** *
73916011 CCAGTCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAGTTTGGGGGACTTTGACTAATAAA
66 CCAGTCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGGGAATTTGACTAATAAA
*
73916076 CTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGCT
131 CTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTT
*
73916141 TCTGGGAAAAATTA--
196 TCTTGGAAAAATTACT
73916155 ---C---G--TAGTTTTCATAGAAACAAACGGAAACAGTATTGAAGCCCCGTGCAGGGAGATATC
1 TCTCTGAGTCTAGTTTTCATAGAAACAAACGGAAACAGTATTGAAGCCCCGTGCAGGGAGATATC
73916212 CCAGTCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGGGAATTTGACTAATAAA
66 CCAGTCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGGGAATTTGACTAATAAA
73916277 CTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTT
131 CTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTT
73916342 TCTTGGAAAAATTACT
196 TCTTGGAAAAATTACT
73916358 AAACTGATTT
Statistics
Matches: 398, Mismatches: 12, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
201 193 0.48
203 1 0.00
206 1 0.00
211 203 0.51
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (211 bp):
TCTCTGAGTCTAGTTTTCATAGAAACAAACGGAAACAGTATTGAAGCCCCGTGCAGGGAGATATC
CCAGTCGTAATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGGGAATTTGACTAATAAA
CTGTACTAATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTT
TCTTGGAAAAATTACT
Found at i:73916262 original size:201 final size:203
Alignment explanation
Indices: 73915744--73916356 Score: 1086
Period size: 201 Copynumber: 3.0 Consensus size: 203
73915734 CTCTCTGAGT
73915744 CTAGTTTTCATAGAAACAAACGGAAACAGTATTGAAGCCCCGTGCAGGGAGATATCCCAGTCGTA
1 CTAGTTTTCATAGAAACAAACGGAAACAGTATTGAAGCCCCGTGCAGGGAGATATCCCAGTCGTA
73915809 ATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGGGAATTTGACTAATAAACTGTACTAA
66 ATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGGGAATTTGACTAATAAACTGTACTAA
73915874 TTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTTTCTTGGAAA
131 TTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTTTCTTGGAAA
73915939 AATTACTTCTCTGAG
196 AATTA-----C--AG
*
73915954 TCTAGTTTTCATAGAAACAAACGGCAACAGTATTGAAGCCCCGTGCAGGGAGATATCCCAGTCGT
1 -CTAGTTTTCATAGAAACAAACGGAAACAGTATTGAAGCCCCGTGCAGGGAGATATCCCAGTCGT
** *
73916019 AATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAGTTTGGGGGACTTTGACTAATAAACTGTACTA
65 AATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGGGAATTTGACTAATAAACTGTACTA
* *
73916084 ATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGCTTCTGGGAA
130 ATTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTTTCTTGGAA
73916149 AAATTAC-G
195 AAATTACAG
73916157 -TAGTTTTCATAGAAACAAACGGAAACAGTATTGAAGCCCCGTGCAGGGAGATATCCCAGTCGTA
1 CTAGTTTTCATAGAAACAAACGGAAACAGTATTGAAGCCCCGTGCAGGGAGATATCCCAGTCGTA
73916221 ATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGGGAATTTGACTAATAAACTGTACTAA
66 ATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGGGAATTTGACTAATAAACTGTACTAA
73916286 TTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTTTCTTGGAAA
131 TTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTTTCTTGGAAA
73916351 AATTAC
196 AATTAC
73916357 TAAACTGATT
Statistics
Matches: 390, Mismatches: 12, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
201 194 0.50
203 1 0.00
206 1 0.00
211 194 0.50
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.24
Consensus pattern (203 bp):
CTAGTTTTCATAGAAACAAACGGAAACAGTATTGAAGCCCCGTGCAGGGAGATATCCCAGTCGTA
ATGGGCAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGGGAATTTGACTAATAAACTGTACTAA
TTGGCCCAACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTTTCTTGGAAA
AATTACAG
Found at i:73923063 original size:27 final size:27
Alignment explanation
Indices: 73923033--73923209 Score: 160
Period size: 27 Copynumber: 6.5 Consensus size: 27
73923023 AAATTGTACA
* *
73923033 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
* ** *
73923060 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* *
73923087 GCACTAAGTGTGCGAATTGAGC-ATGCG
1 GCACTAAGTGTGCGATTTGA-CTATGTG
* *
73923114 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
73923142 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
73923169 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
73923196 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
73923210 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
27 101 0.82
28 22 0.18
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:73923146 original size:82 final size:81
Alignment explanation
Indices: 73923033--73923188 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
73923023 AAATTGTACA
* * * *
73923033 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
73923097 TGCGAATTGAGCATGCG
65 TGCGAATTGAGCATGCG
* ** *
73923114 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGGGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
73923179 TGCGAGTTGA
65 TGCGAATTGA
73923189 TTATATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.77
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGAGCATGCG
Found at i:73923155 original size:55 final size:54
Alignment explanation
Indices: 73923060--73923209 Score: 167
Period size: 55 Copynumber: 2.8 Consensus size: 54
73923050 TGACTATGTT
* ** * *
73923060 GCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGAGCATGCG
1 GCACTAAGTGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGAGCACGCG
* * ** *
73923114 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGT-TGACTATATAGCACTAAGTGTGCGAATTGAGCACGCG
* *
73923169 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTGTGCG
73923210 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 36 0.44
55 45 0.56
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGAGCACGCG
Found at i:73923200 original size:82 final size:81
Alignment explanation
Indices: 73923029--73923209 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
73923019 GATTAAATTG
* * * * *
73923029 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
73923094 GTGTGCGAATTGAGCA
66 GTGTGCGAATTGAGCA
* * ** *
73923110 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
73923174 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGAGCA
* *
73923192 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
73923210 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 17 0.21
82 64 0.79
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGAGCA
Found at i:73940036 original size:47 final size:47
Alignment explanation
Indices: 73939975--73940072 Score: 153
Period size: 47 Copynumber: 2.1 Consensus size: 47
73939965 TCTCGACAAA
* ** *
73939975 AATA-GGGATCAAATTAGGGGATTTCAACAATAATGGTTTATGGGTT
1 AATATGGGATAAAATTAGGGGATTTCAACAATAACAGTTTATGAGTT
73940021 AATATGGGATAAAATTAGGGGATTTCAACAATAACAGTTTATGAGTT
1 AATATGGGATAAAATTAGGGGATTTCAACAATAACAGTTTATGAGTT
73940068 AATAT
1 AATAT
73940073 TGAGGGTAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
46 4 0.09
47 43 0.91
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (47 bp):
AATATGGGATAAAATTAGGGGATTTCAACAATAACAGTTTATGAGTT
Found at i:73942588 original size:93 final size:93
Alignment explanation
Indices: 73942409--73942581 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
73942399 CTAATCTAGC
* * *
73942409 AAAATCTTTTCACCCTATCTCTAGGCGTGCAATCAACTCTGCTTAATTATGACAAATGTACTCTT
1 AAAATCTTGTCACCCTATCTCTAGGCGCGCAATCAACTCTGCTTAATTATGAAAAATGTACTCTT
73942474 AAACAGGGTCTATTCTGCCTCTGAAGGA
66 AAACAGGGTCTATTCTGCCTCTGAAGGA
* *
73942502 AAAATCTTGTCACCCTATCTTTAGGCGCGCAATCAACTCTGCTTAATTATGAAAAATGTAGTCTT
1 AAAATCTTGTCACCCTATCTCTAGGCGCGCAATCAACTCTGCTTAATTATGAAAAATGTACTCTT
* *
73942567 AGATAGGGTCTATTC
66 AAACAGGGTCTATTC
73942582 CTCCTCTAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (93 bp):
AAAATCTTGTCACCCTATCTCTAGGCGCGCAATCAACTCTGCTTAATTATGAAAAATGTACTCTT
AAACAGGGTCTATTCTGCCTCTGAAGGA
Found at i:73942909 original size:86 final size:86
Alignment explanation
Indices: 73942759--73942930 Score: 308
Period size: 86 Copynumber: 2.0 Consensus size: 86
73942749 AACTAAAAAG
* *
73942759 GAAACCATCTTAGAAGAATAATGAATACAAAACATAAAGAAAACCCAAAACTCCTGAAGGGAAAT
1 GAAAACATCTTAGAAGAATAATGAATACAAAACATAAAGAAAACCCAAAACTCCTAAAGGGAAAT
*
73942824 TGAGGGGAGATCTTCAGTCTT
66 TGAGGGAAGATCTTCAGTCTT
*
73942845 GAAAACATCTTAGAAGAATAATGAATACAAAACATAGAGAAAACCCAAAACTCCTAAAGGGAAAT
1 GAAAACATCTTAGAAGAATAATGAATACAAAACATAAAGAAAACCCAAAACTCCTAAAGGGAAAT
73942910 TGAGGGAAGATCTTCAGTCTT
66 TGAGGGAAGATCTTCAGTCTT
73942931 AATGGTGAAT
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 82 1.00
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.20
Consensus pattern (86 bp):
GAAAACATCTTAGAAGAATAATGAATACAAAACATAAAGAAAACCCAAAACTCCTAAAGGGAAAT
TGAGGGAAGATCTTCAGTCTT
Found at i:73944775 original size:29 final size:28
Alignment explanation
Indices: 73944742--73944814 Score: 110
Period size: 29 Copynumber: 2.6 Consensus size: 28
73944732 TGAATGTGAC
*
73944742 TGGGCCTAACGGGCCATATAAATATGATT
1 TGGGCCTAATGGGCCATATAAATATGA-T
*
73944771 TGGGCCTAATGGGCCATATGAATATGAT
1 TGGGCCTAATGGGCCATATAAATATGAT
*
73944799 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
73944815 GATACAAGTA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 16 0.39
29 25 0.61
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (28 bp):
TGGGCCTAATGGGCCATATAAATATGAT
Found at i:73944810 original size:28 final size:28
Alignment explanation
Indices: 73944729--73944814 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
73944719 GTGAGCATGA
* * *
73944729 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATATGATTGGGCCTAATGGGCC
*
73944757 ATATAAATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGA-TTGGGCCTAATGGGCC
*
73944786 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATATGATTGGGCCTAATGGGCC
73944814 A
1 A
73944815 GATACAAGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 26 0.51
29 25 0.49
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATGAATATGATTGGGCCTAATGGGCC
Found at i:73948980 original size:16 final size:16
Alignment explanation
Indices: 73948946--73948980 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
73948936 ATGTATCGGC
*
73948946 AAAAGTCGAAATGCCG
1 AAAAGTCGAAAAGCCG
*
73948962 AAAAGTCGAAAAGCTG
1 AAAAGTCGAAAAGCCG
73948978 AAA
1 AAA
73948981 TGCCAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.23, T:0.11
Consensus pattern (16 bp):
AAAAGTCGAAAAGCCG
Found at i:73949255 original size:29 final size:29
Alignment explanation
Indices: 73949222--73949306 Score: 116
Period size: 29 Copynumber: 2.9 Consensus size: 29
73949212 AATATAACTG
*
73949222 GGCCTAACGGGCCATATAAATGTGATTTA
1 GGCCTAATGGGCCATATAAATGTGATTTA
* * *
73949251 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTA
* *
73949280 GGCCTAATGGGCCATATGAATATGATT
1 GGCCTAATGGGCCATATAAATGTGATT
73949307 GGGCTTATTG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTA
Found at i:73950214 original size:15 final size:15
Alignment explanation
Indices: 73950194--73950226 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
73950184 TTTCATTGTG
73950194 TTATTATTACTTA-AA
1 TTATTATTA-TTATAA
73950209 TTATTATTATTATAA
1 TTATTATTATTATAA
73950224 TTA
1 TTA
73950227 CTAGAAGTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 3 0.18
15 14 0.82
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATTATTATTATAA
Done.