Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 214 of 290
Found at i:73950368 original size:21 final size:22
Alignment explanation
Indices: 73950330--73950377 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
73950320 ATAACTGAAA
**
73950330 GGTTTCTTTTTAAGTTAATTAG
1 GGTTTCTTTTTAAGTTAAGAAG
**
73950352 GGTTTC-TTTTATTTTAAGAAG
1 GGTTTCTTTTTAAGTTAAGAAG
73950373 GGTTT
1 GGTTT
73950378 TCAATGAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.21, C:0.04, G:0.21, T:0.54
Consensus pattern (22 bp):
GGTTTCTTTTTAAGTTAAGAAG
Found at i:73954465 original size:46 final size:46
Alignment explanation
Indices: 73954398--73954569 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
73954388 AACCCGCCCC
*
73954398 TAAGTGAACTTGGACTCAACTCAACGAGCTT-GGGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGGCGTTCACATCCA
*
73954444 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCACATCCA
* * * * *
73954492 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
* *
73954537 TATGTGAACTCAGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
73954570 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 3 0.03
46 56 0.54
47 28 0.27
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
Found at i:73954516 original size:93 final size:93
Alignment explanation
Indices: 73954403--73954573 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
73954393 GCCCCTAAGT
* * * *
73954403 GAACTTGGACTCAACTCAACGAGCTT-GGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
73954467 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
* *
73954496 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATATGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
73954561 CGAGTTCGGATGC
66 CGAGTTCGGATGC
73954574 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:73957636 original size:34 final size:35
Alignment explanation
Indices: 73957578--73957649 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
73957568 CGTATCCTAG
*
73957578 CTACAGTCTCAGTCTTCTAAAGTTTTCAGT-TTTCC
1 CTACAGTCTCAGTCTTCTAAAG-TTTCAGTATTACC
* *
73957613 CTACTGTCTCAGT-TTCTACAGTTTCAGTATTACC
1 CTACAGTCTCAGTCTTCTAAAGTTTCAGTATTACC
73957647 CTA
1 CTA
73957650 ACTACAGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 7 0.21
34 14 0.42
35 12 0.36
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (35 bp):
CTACAGTCTCAGTCTTCTAAAGTTTCAGTATTACC
Found at i:73959158 original size:65 final size:65
Alignment explanation
Indices: 73959054--73959509 Score: 867
Period size: 65 Copynumber: 7.0 Consensus size: 65
73959044 AGTCCCATGC
73959054 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTAAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTAAACCTT
73959119 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTAAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTAAACCTT
73959184 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTAAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTAAACCTT
73959249 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTAAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTAAACCTT
73959314 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTAAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTAAACCTT
73959379 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTAAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTAAACCTT
* * * * *
73959444 ATCAGATAATAATAACATGGCATGCAGTAAATAGCAACTGTCAAACATGCATTCAGATCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTAAACCTT
73959509 A
1 A
73959510 ACCTTAGGGG
Statistics
Matches: 386, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 386 1.00
ACGTcount: A:0.42, C:0.17, G:0.16, T:0.25
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTAAACCTT
Found at i:73960824 original size:19 final size:20
Alignment explanation
Indices: 73960800--73960840 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
73960790 TTTTGGCTAG
73960800 AAGAAAA-AGGAAAAAAAGA
1 AAGAAAAGAGGAAAAAAAGA
73960819 AAGAAAATGGAGGAAAAAAAGA
1 AAGAAAA--GAGGAAAAAAAGA
73960841 GAAAGAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
22 12 0.63
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.02
Consensus pattern (20 bp):
AAGAAAAGAGGAAAAAAAGA
Found at i:73962169 original size:33 final size:35
Alignment explanation
Indices: 73962112--73962182 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
73962102 CGTATCCTAG
73962112 CTACAGTCTCAATCTTCTAAAGTTTTCAGT-TT-CC
1 CTACAGTCTCAATCTTCTAAAG-TTTCAGTATTACC
* * *
73962146 CTACTGTCTCAGT-TTCTACAGTTTCAGTATTACC
1 CTACAGTCTCAATCTTCTAAAGTTTCAGTATTACC
73962180 CTA
1 CTA
73962183 ACTACAGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
32 7 0.22
33 9 0.28
34 16 0.50
ACGTcount: A:0.23, C:0.27, G:0.10, T:0.41
Consensus pattern (35 bp):
CTACAGTCTCAATCTTCTAAAGTTTCAGTATTACC
Found at i:73963326 original size:32 final size:33
Alignment explanation
Indices: 73963280--73963343 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
73963270 AACAGCGGGT
73963280 ACTGGGCCGAAGCCC-TTTTCAGA-ATACAGTAA
1 ACTGGGCCGAAGCCCTTTTTCAGATA-ACAGTAA
**
73963312 ACTGGGCCTTAGCCCTTTTTCAGATAACAGTA
1 ACTGGGCCGAAGCCCTTTTTCAGATAACAGTA
73963344 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 13 0.46
33 14 0.50
34 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (33 bp):
ACTGGGCCGAAGCCCTTTTTCAGATAACAGTAA
Found at i:73963342 original size:33 final size:32
Alignment explanation
Indices: 73963280--73963343 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
73963270 AACAGCGGGT
73963280 ACTGGGCCGAAGCCCTTTTCAGAATACAGTAA
1 ACTGGGCCGAAGCCCTTTTCAGAATACAGTAA
**
73963312 ACTGGGCCTTAGCCCTTTTTCAG-ATAACAGTA
1 ACTGGGCCGAAGCCC-TTTTCAGAAT-ACAGTA
73963344 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 15 0.54
33 13 0.46
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (32 bp):
ACTGGGCCGAAGCCCTTTTCAGAATACAGTAA
Found at i:73967136 original size:65 final size:65
Alignment explanation
Indices: 73967032--73967877 Score: 1676
Period size: 65 Copynumber: 13.0 Consensus size: 65
73967022 AGTCCCATGC
73967032 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
73967097 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
73967162 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
73967227 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
73967292 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
73967357 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
73967422 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
73967487 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
73967552 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
73967617 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
73967682 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
73967747 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
73967812 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTC-ATACATGCATTCAGGTCAACCT
1 ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGA-ACATGCATTCAGGTCAACCT
73967876 T
65 T
73967877 A
1 A
73967878 ACCCTAGGGG
Statistics
Matches: 780, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
64 1 0.00
65 779 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
Found at i:73979289 original size:42 final size:41
Alignment explanation
Indices: 73979243--73979341 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 41
73979233 AAGTCCATTT
* *
73979243 CTGGGATATGGCATCGATATGACACTTC-ATGTAAGACTATAG
1 CTGGGATATGGCATCGATACGACA--TCAATGTAAGACCATAG
* * *
73979285 CTGGGCTATTGGCATCGATACGAGATCAAATGTAAGACCATAT
1 CTGGGATA-TGGCATCGATACGACATC-AATGTAAGACCATAG
73979328 CTGGGATATGGCAT
1 CTGGGATATGGCAT
73979342 TGGCACGAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
41 2 0.04
42 13 0.27
43 33 0.69
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (41 bp):
CTGGGATATGGCATCGATACGACATCAATGTAAGACCATAG
Found at i:73980278 original size:13 final size:13
Alignment explanation
Indices: 73980260--73980284 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73980250 TGGCCTCACG
73980260 CATGGGCGTGTGT
1 CATGGGCGTGTGT
73980273 CATGGGCGTGTG
1 CATGGGCGTGTG
73980285 AAGTCTGCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.16, G:0.48, T:0.28
Consensus pattern (13 bp):
CATGGGCGTGTGT
Found at i:73981442 original size:6 final size:6
Alignment explanation
Indices: 73981431--73981462 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
73981421 ATTCCTACCT
73981431 TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TT
1 TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TT
73981463 GTTTCATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (6 bp):
TTTTGG
Found at i:73987760 original size:40 final size:40
Alignment explanation
Indices: 73987705--73987784 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
73987695 GGAAACTAGA
73987705 CTCAGAGAGGAATCCATACATATATGGTATGACCCCTAAT
1 CTCAGAGAGGAATCCATACATATATGGTATGACCCCTAAT
73987745 CTCAGAGAGGAATCCATACATATATGGTATGACCCCTAAT
1 CTCAGAGAGGAATCCATACATATATGGTATGACCCCTAAT
73987785 TATCTCTGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (40 bp):
CTCAGAGAGGAATCCATACATATATGGTATGACCCCTAAT
Found at i:73988594 original size:27 final size:27
Alignment explanation
Indices: 73988563--73988615 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
73988553 TAACAACCCT
73988563 TATGTACATACACAATAAACTAACTTG
1 TATGTACATACACAATAAACTAACTTG
* *
73988590 TATGTACATACGCAATAGACTAACTT
1 TATGTACATACACAATAAACTAACTT
73988616 AGCCGAAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (27 bp):
TATGTACATACACAATAAACTAACTTG
Found at i:73988904 original size:40 final size:40
Alignment explanation
Indices: 73988806--73988989 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
73988796 TCCTCGTTCA
* * * * *
73988806 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
73988845 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
73988885 AATGCCTTCGGGGCTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
73988925 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
73988965 AAGGCCTTC-GGATCTTAATCCGGAT
1 AATGCCTTCGGGA-CTTAACCCGGAT
73988990 ATATTCACTT
Statistics
Matches: 129, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 37 0.29
40 92 0.71
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:73989012 original size:80 final size:79
Alignment explanation
Indices: 73988842--73989028 Score: 203
Period size: 80 Copynumber: 2.3 Consensus size: 79
73988832 TAGTAACTCA
* * * *
73988842 CACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGGCTTAACCCG
1 CACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGAGCTTAACCCG
* *
73988907 GATTTAATAACTCG
66 GATATAATAACTAG
** * * *
73988921 CACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTTAATCC
1 CAC-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGAGCTTAACCC
* *
73988986 GGATATATTCACTTAG
65 GGATATAATAAC-TAG
* * * *
73989002 TACAAAGCCTTCAGGACTTAGCCCGGA
1 CACAATGCCTTCGGGACTTAACCCGGA
73989029 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 17, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
79 3 0.03
80 82 0.92
81 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (79 bp):
CACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGAGCTTAACCCG
GATATAATAACTAG
Found at i:73996802 original size:40 final size:40
Alignment explanation
Indices: 73996719--73997141 Score: 638
Period size: 40 Copynumber: 10.6 Consensus size: 40
73996709 TCCTCGTTCA
* * * *
73996719 AATGCCTTCGGGACATAGCCC-GATTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGA-TTTAATAACTCGCACG
* *
73996758 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
73996798 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
73996838 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
73996878 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
73996918 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
73996958 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
73996998 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
73997038 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
73997078 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTGGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
73997118 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
73997142 CAGCATTCAA
Statistics
Matches: 360, Mismatches: 19, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
39 35 0.10
40 317 0.88
41 8 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:74001039 original size:39 final size:40
Alignment explanation
Indices: 74000996--74001139 Score: 209
Period size: 40 Copynumber: 3.6 Consensus size: 40
74000986 TCCTCGTTCA
* * * *
74000996 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
74001035 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
74001075 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* *
74001115 AATGCCTTCGGGACTTAATCCGGAT
1 AATGCCTTCGGGACATAACCCGGAT
74001140 ATATTCACTT
Statistics
Matches: 96, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 34 0.35
40 62 0.65
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:74001094 original size:40 final size:39
Alignment explanation
Indices: 74000996--74001178 Score: 197
Period size: 40 Copynumber: 4.6 Consensus size: 39
74000986 TCCTCGTTCA
* * * ** *
74000996 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
*
74001035 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
*
74001074 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
* * * *
74001114 GAATGCCTTCGGGACTTAATCCGGATATATTC-ACTTAGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCAC
* *
74001155 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
74001179 CAGCATTCAA
Statistics
Matches: 126, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
39 34 0.27
40 87 0.69
41 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC
Found at i:74001162 original size:80 final size:78
Alignment explanation
Indices: 74000994--74001178 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 78
74000984 GCTCCTCGTT
* * *
74000994 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGA
* *
74001059 TTTAACAACTCGCA
65 TATAACAACTAGCA
* * * * *
74001073 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAATCCGG
1 C-AAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGG
*
74001138 ATATATTC-ACTTAGCA
64 ATATA-ACAAC-TAGCA
74001154 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
74001179 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
79 32 0.36
80 51 0.57
81 6 0.07
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (78 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGAT
ATAACAACTAGCA
Found at i:74009790 original size:52 final size:51
Alignment explanation
Indices: 74009712--74009814 Score: 197
Period size: 52 Copynumber: 2.0 Consensus size: 51
74009702 CCATTGTTAC
74009712 TCTTTCCCACTTCCATAGCGGAATTTTCACAGGTTGCAGTAATCCCGAAGG
1 TCTTTCCCACTTCCATAGCGGAATTTTCACAGGTTGCAGTAATCCCGAAGG
74009763 NTCTTTCCCACTTCCATAGCGGAATTTTCACAGGTTGCAGTAATCCCGAAGG
1 -TCTTTCCCACTTCCATAGCGGAATTTTCACAGGTTGCAGTAATCCCGAAGG
74009815 AAATTGGTGC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.29
Consensus pattern (51 bp):
TCTTTCCCACTTCCATAGCGGAATTTTCACAGGTTGCAGTAATCCCGAAGG
Found at i:74016352 original size:183 final size:183
Alignment explanation
Indices: 74016044--74016377 Score: 650
Period size: 183 Copynumber: 1.8 Consensus size: 183
74016034 ACAGTATATG
74016044 TTTCAGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAGCTGCCATCTAATCTTC
1 TTTCAGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAGCTGCCATCTAATCTTC
74016109 GAATTAATATTTGGTACTGATATAGATAAAGTTTTCATATTTGCTTAAACTGAAATATATTTGGT
66 GAATTAATATTTGGTACTGATATAGATAAAGTTTTCATATTTGCTTAAACTGAAATATATTTGGT
74016174 GCTACTCTTATAATCTTACATGTGTCTGTATTAGTGAATTAATGTTGTATGTA
131 GCTACTCTTATAATCTTACATGTGTCTGTATTAGTGAATTAATGTTGTATGTA
*
74016227 TTTCAGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTC
1 TTTCAGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAGCTGCCATCTAATCTTC
*
74016292 GAATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGT
66 GAATTAATATTTGGTACTGATATAGATAAAGTTTTCATATTTGCTTAAACTGAAATATATTTGGT
74016357 GCTACTCTTATAATCTTACAT
131 GCTACTCTTATAATCTTACAT
74016378 CTGTTCTAGG
Statistics
Matches: 149, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
183 149 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (183 bp):
TTTCAGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAGCTGCCATCTAATCTTC
GAATTAATATTTGGTACTGATATAGATAAAGTTTTCATATTTGCTTAAACTGAAATATATTTGGT
GCTACTCTTATAATCTTACATGTGTCTGTATTAGTGAATTAATGTTGTATGTA
Found at i:74017685 original size:356 final size:356
Alignment explanation
Indices: 74016831--74018421 Score: 3092
Period size: 356 Copynumber: 4.5 Consensus size: 356
74016821 CTTGTCCATT
*
74016831 AAAATTACAACAATGGATGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
*
74016896 ATTGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
74016961 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
74017026 TCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTAT
196 TCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTC-TTTTTTAT
74017091 ATTATTATATTCAAATTACTATTTTTCGCATTAATAATGTTTGATTTTAATATTTAATATTTTTA
260 ATTATTATATTCAAATTACTATTTTTCGCATTAATAATGTTTGATTTTAATATTTAATATTTTTA
74017156 AATGTCTTTAAAAGTTATAACTAATTTTTATC
325 AATGTCTTTAAAAGTTATAACTAATTTTTATC
74017188 AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
*
74017253 ATTGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
74017318 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
74017383 TCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATA
196 TCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATA
74017448 TTATTATATTCAAATTACTATTTTTCGCATTAATAATGTTTGATTTTAATATTTAATATTTTTAA
261 TTATTATATTCAAATTACTATTTTTCGCATTAATAATGTTTGATTTTAATATTTAATATTTTTAA
74017513 ATGTCTTTAAAAGTTATAACTAATTTTTATC
326 ATGTCTTTAAAAGTTATAACTAATTTTTATC
74017544 AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
74017609 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
*
74017674 GTAATAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
74017739 TCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATA
196 TCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATA
74017804 TTATTATATTCAAATTACTATTTTTCGCATTAATAATGTTTGATTTTAATATTTAATATTTTTAA
261 TTATTATATTCAAATTACTATTTTTCGCATTAATAATGTTTGATTTTAATATTTAATATTTTTAA
74017869 ATGTCTTTAAAAGTTATAACTAATTTTTATC
326 ATGTCTTTAAAAGTTATAACTAATTTTTATC
*
74017900 AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTGT
1 AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
*
74017965 ATAGGCTGGAAACCTGACGGGTTGACTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
74018030 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
74018095 TCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATA
196 TCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATA
74018160 TTATTATATTCAAATTACTATTTTTCGCATTAATAATGTTTGATTTTAATATTTAATATTTTTAA
261 TTATTATATTCAAATTACTATTTTTCGCATTAATAATGTTTGATTTTAATATTTAATATTTTTAA
74018225 ATGTCTTTAAAAGTTATAACTAATTTTTATC
326 ATGTCTTTAAAAGTTATAACTAATTTTTATC
*
74018256 AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTGT
1 AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
*
74018321 ATAGGCTGGAAACCTGACGGGTTGACTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
66 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
*
74018386 GTAACAACGCCGCGTATGATGAATCTTAAAAAATTC
131 GTAACAACGCCACGTATGATGAATCTTAAAAAATTC
74018422 TTCATTTTAT
Statistics
Matches: 1227, Mismatches: 7, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
356 977 0.80
357 250 0.20
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (356 bp):
AAAATTACAACAATGGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
TCATTTACTATTGAATATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTATA
TTATTATATTCAAATTACTATTTTTCGCATTAATAATGTTTGATTTTAATATTTAATATTTTTAA
ATGTCTTTAAAAGTTATAACTAATTTTTATC
Found at i:74018675 original size:15 final size:15
Alignment explanation
Indices: 74018631--74018686 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
74018621 AACGACACGT
*
74018631 ATATTACTTAATTAAA
1 ATATTATTTAATT-AA
74018647 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
74018660 ATATTATTTAATTAA
1 ATATTATTTAATTAA
74018675 ATATTATTTAAT
1 ATATTATTTAAT
74018687 CCCGCTACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 2 0.06
15 16 0.46
16 4 0.11
17 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:74018831 original size:9 final size:9
Alignment explanation
Indices: 74018819--74018980 Score: 69
Period size: 9 Copynumber: 17.4 Consensus size: 9
74018809 CAAAACATAC
74018819 ATAACTTAT
1 ATAACTTAT
*
74018828 ATAACTTAG
1 ATAACTTAT
*
74018837 ATAA-ATAT
1 ATAACTTAT
*
74018845 ATAACTTAC
1 ATAACTTAT
*
74018854 ATAACTTAC
1 ATAACTTAT
74018863 ATAATACTTAAAT
1 AT-A-ACTT--AT
**
74018876 ATATTTTATAT
1 ATA-ACT-TAT
* *
74018887 CATAATTTAC
1 -ATAACTTAT
*
74018897 ATAACTTAC
1 ATAACTTAT
74018906 ATAACTTAT
1 ATAACTTAT
*
74018915 ATAACTTAG
1 ATAACTTAT
*
74018924 ATAA-ATAT
1 ATAACTTAT
* *
74018932 ATAATTTAC
1 ATAACTTAT
*
74018941 ATAA-ATAT
1 ATAACTTAT
* *
74018949 ATATCATAT
1 ATAACTTAT
*
74018958 CATAACTTAC
1 -ATAACTTAT
*
74018968 ATAACTTAC
1 ATAACTTAT
74018977 ATAA
1 ATAA
74018981 TACTTAAATA
Statistics
Matches: 120, Mismatches: 23, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
8 17 0.14
9 76 0.63
10 9 0.08
11 8 0.07
12 6 0.05
13 4 0.03
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (9 bp):
ATAACTTAT
Found at i:74018847 original size:17 final size:17
Alignment explanation
Indices: 74018825--74018980 Score: 93
Period size: 17 Copynumber: 8.9 Consensus size: 17
74018815 ATACATAACT
*
74018825 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
74018842 TATATAACTTACATAACT
1 TATATAACTTACATAA-A
* *
74018860 TACATAA--TACTTAAA
1 TATATAACTTACATAAA
** *
74018875 TATAT-TTTATATCATAATT
1 TATATAACT-TA-CATAA-A
* *
74018894 TACATAACTTACATAACT
1 TATATAACTTACATAA-A
*
74018912 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
74018929 TATATAATTTACATAAA
1 TATATAACTTACATAAA
* * *
74018946 TATATATCATATCATAACT
1 TATATAACTTA-CATAA-A
*
74018965 TACATAACTTACATAA
1 TATATAACTTACATAA
74018981 TACTTAAATA
Statistics
Matches: 105, Mismatches: 25, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
15 4 0.04
16 6 0.06
17 40 0.38
18 40 0.38
19 14 0.13
20 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.39
Consensus pattern (17 bp):
TATATAACTTACATAAA
Found at i:74018962 original size:96 final size:96
Alignment explanation
Indices: 74018764--74018971 Score: 222
Period size: 96 Copynumber: 2.1 Consensus size: 96
74018754 ATAAAAAACT
** *
74018764 TACATAATACATAAATATATTTGATATCATAATTTATTTAACTTACAAAACATACATAACTTATA
1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACATACATAACTTAGA
* * * *
74018829 TAACTTAGATAAATATATAACTTACATAACT
66 TAACATAGATAAATACATAACATACATAACA
* * * * *
74018860 TACATAATACTTAAATATATTTTATATCATAATTTACATAACTTACATAACTTATATAACTTAGA
1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACATACATAACTTAGA
* * * *
74018925 TAA-ATATATAATTTACATAA-ATATATATCA
66 TAACATAGATAA-ATACATAACATACATAACA
74018955 TATCATAACTTACATAA
1 TA-CATAA--TACATAA
74018972 CTTACATAAT
Statistics
Matches: 91, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
95 14 0.15
96 71 0.78
98 6 0.07
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (96 bp):
TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACATACATAACTTAGA
TAACATAGATAAATACATAACATACATAACA
Found at i:74024206 original size:13 final size:14
Alignment explanation
Indices: 74024190--74024218 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
74024180 TTCTAAATAT
74024190 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
74024203 TTATAATTGTTTAA
1 TTATAATTGTTTAA
74024217 TT
1 TT
74024219 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:74025093 original size:43 final size:43
Alignment explanation
Indices: 74025032--74025199 Score: 300
Period size: 43 Copynumber: 3.9 Consensus size: 43
74025022 AATTAGGGAA
*
74025032 AAACGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTCTCTTC
1 AAACGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTTTCTTC
*
74025075 AAACGCCGCTAAAGGCCACGAATTTTAGCGGCGCTTTTTCTTC
1 AAACGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTTTCTTC
*
74025118 AAACGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTTTATTC
1 AAACGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTTTCTTC
*
74025161 AAACGCCGCTAAAGGCCACGACTTTTAGCGGCACTTTTT
1 AAACGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTTT
74025200 TTAATAAATG
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 120 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTAAAGGCCACGACTTTTAGCGGCGCTTTTTCTTC
Found at i:74026862 original size:9 final size:9
Alignment explanation
Indices: 74026835--74026869 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
74026825 CAAATTCCAC
74026835 CATTCAATT
1 CATTCAATT
*
74026844 -ATTCATTT
1 CATTCAATT
74026852 CATTCAATT
1 CATTCAATT
74026861 CATTCAATT
1 CATTCAATT
74026870 TAATCCATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.31, C:0.20, G:0.00, T:0.49
Consensus pattern (9 bp):
CATTCAATT
Found at i:74033367 original size:47 final size:47
Alignment explanation
Indices: 74032359--74033365 Score: 1717
Period size: 47 Copynumber: 21.4 Consensus size: 47
74032349 ATTGATGTAC
* ** * *
74032359 AAGTATATATATGTGATAGGCCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
* * *
74032406 AAGTATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74032455 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
* * *
74032502 AAGTGTATATATGTGATAAGGCCGAATGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74032549 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74032596 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74032643 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74032690 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74032737 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74032784 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74032831 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74032878 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74032925 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74032972 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74033019 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74033066 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74033113 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
74033160 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
* * * * *
74033207 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
* * ** * * * *
74033254 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
* * * * * *
74033301 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
*
74033348 AAGTGTATAAATGTGATA
1 AAGTGTATATATGTGATA
74033366 AGTCCCGAAG
Statistics
Matches: 934, Mismatches: 24, Indels: 4
0.97 0.02 0.00
Matches are distributed among these distances:
47 889 0.95
49 45 0.05
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGA
Found at i:74040143 original size:50 final size:49
Alignment explanation
Indices: 74040033--74040208 Score: 181
Period size: 50 Copynumber: 3.5 Consensus size: 49
74040023 CTGGTACGCA
* * * * ** *
74040033 TAGTACCCTGCACATAGTACTACAAATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
*
74040082 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
*** * * * *
74040132 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAATTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACCATCCGATACACG
*
74040183 TGGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
74040209 TGCGACCTCA
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
49 29 0.27
50 43 0.40
51 35 0.32
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:74040216 original size:101 final size:99
Alignment explanation
Indices: 74040033--74040216 Score: 251
Period size: 101 Copynumber: 1.8 Consensus size: 99
74040023 CTGGTACGCA
* *
74040033 TAGTACCCTGCACATAGTACTACAAATGTGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTACCCTGCACATAGTACTACAAACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
74040098 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * * * * *
74040132 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAATTTTCGGGTACGCATGGTAGCCTGCACT
1 TAGTACCCTGCACATAGTACTACAAACGTGA-C-CAATTATCCGGTACACATAGTAGCCTGCACT
*
74040197 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
74040217 CACAATAGAT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 27 0.38
100 1 0.01
101 44 0.61
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTACCCTGCACATAGTACTACAAACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:74042092 original size:43 final size:43
Alignment explanation
Indices: 74042042--74042180 Score: 133
Period size: 43 Copynumber: 3.3 Consensus size: 43
74042032 TCCCGGATGT
* * *
74042042 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACACGTAATTCAATATCGATGCCTATGTCCCAGACAC
* * * *
74042085 GGTCTTACACG-AAATCAGATA-CGATGCCGATGTCACAGACAT
1 GGTCTTACACGTAATTCA-ATATCGATGCCTATGTCCCAGACAC
* * *
74042127 GGTCTTATACGTATATCTC-A-ATCGAGGCCTGTGTCCCAGACAC
1 GGTCTTACACGTA-AT-TCAATATCGATGCCTATGTCCCAGACAC
74042170 GGTCTTACACG
1 GGTCTTACACG
74042181 ATATCTCAAG
Statistics
Matches: 77, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
42 33 0.43
43 41 0.53
44 1 0.01
45 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGTAATTCAATATCGATGCCTATGTCCCAGACAC
Found at i:74046100 original size:29 final size:28
Alignment explanation
Indices: 74046057--74046114 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 28
74046047 TATTCATTTT
*
74046057 ATTCAACATGCAATTCATTCCTGGTTTC
1 ATTCAACATGCAATTCATTCCTGCTTTC
74046085 ANTTCAACATGCAATTCATTCCTGCTTTC
1 A-TTCAACATGCAATTCATTCCTGCTTTC
74046114 A
1 A
74046115 ACAAGCTAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 1 0.04
29 27 0.96
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.38
Consensus pattern (28 bp):
ATTCAACATGCAATTCATTCCTGCTTTC
Found at i:74047818 original size:19 final size:20
Alignment explanation
Indices: 74047794--74047832 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
74047784 TAGGTAAGGG
* *
74047794 CATTACCGAATAA-ACAGAA
1 CATTACAGAACAATACAGAA
74047813 CATTACAGAACAATACAGAA
1 CATTACAGAACAATACAGAA
74047833 TAACATATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.54, C:0.21, G:0.10, T:0.15
Consensus pattern (20 bp):
CATTACAGAACAATACAGAA
Found at i:74049092 original size:43 final size:42
Alignment explanation
Indices: 74048956--74049105 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 42
74048946 CAATGCCCAC
* * * *
74048956 GTCCCAAACGTGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAATTCAA-ATCGATGCCTGT
* * * *
74048999 ATCCCAGACAGGGTCTTACACG-AAATCAGATACGATGCC-GAT
1 GTCCCAGACATGGTCTTACACGTAATTCAAAT-CGATGCCTG-T
* *
74049041 GTCCCAGACATGGTCTTATACGTAATTCTAAATCGAGGCCTGT
1 GTCCCAGACATGGTCTTACACGTAATTC-AAATCGATGCCTGT
*
74049084 GTCCCAGACACGGTCTTACACG
1 GTCCCAGACATGGTCTTACACG
74049106 ATGTCTCAGA
Statistics
Matches: 86, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.02
42 32 0.37
43 48 0.56
44 4 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAATTCAAATCGATGCCTGT
Found at i:74059795 original size:40 final size:40
Alignment explanation
Indices: 74059758--74059942 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
74059748 GCTACTCGTT
*
74059758 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
74059798 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
74059838 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
74059877 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
74059918 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74059943 CATCATTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:74059869 original size:79 final size:82
Alignment explanation
Indices: 74059758--74059942 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
74059748 GCTACTCGTT
* * *
74059758 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
74059821 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
74059838 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTTGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
74059901 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
74059918 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
74059943 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:74069679 original size:37 final size:37
Alignment explanation
Indices: 74069629--74069778 Score: 246
Period size: 37 Copynumber: 4.1 Consensus size: 37
74069619 CTTTAGCTCA
* *
74069629 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
74069666 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
74069703 GACATAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
74069740 GACATAATCTCCACACGTAGTCATCGAGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
74069777 GA
1 GA
74069779 ATATATTTCC
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:74070042 original size:47 final size:47
Alignment explanation
Indices: 74069983--74070167 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
74069973 TACATATATT
* * * *
74069983 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
74070030 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
74070077 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
74070124 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT
74070168 CACAATTATC
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:74070103 original size:22 final size:22
Alignment explanation
Indices: 74070076--74070151 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
74070066 GCTCACATTC
74070076 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* ** *
74070098 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
*
74070122 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
74070145 ATCACAT
1 ATCACAT
74070152 ATATGCACAT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 10 0.25
25 7 0.17
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:74072082 original size:37 final size:37
Alignment explanation
Indices: 74071981--74072083 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
74071971 CGAATAGTCC
* *
74071981 CCACACGTAGTTATCGGGTCTTACCCGAACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
74072018 CCACACGTAGTCATCGGGTCTTACCCGGAGAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
74072055 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
74072084 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:74073565 original size:40 final size:40
Alignment explanation
Indices: 74073495--74073672 Score: 220
Period size: 40 Copynumber: 4.5 Consensus size: 40
74073485 AAACCAAGTA
* * *
74073495 CCTTCGGGATTTAG-CCGGATATAG-CTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
74073534 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
74073574 CCTTCGGGGCTTAGCCCGGAGT-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-TATAGTCACTAGCACAAATG
** *
74073614 CCTTCGGGGTTTAGCTCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTCACTAGCACAAATG
74073654 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
74073673 TTATCATCCG
Statistics
Matches: 123, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
39 13 0.11
40 109 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:74075476 original size:48 final size:48
Alignment explanation
Indices: 74075416--74076531 Score: 1638
Period size: 48 Copynumber: 23.0 Consensus size: 48
74075406 ATATACACAC
* *
74075416 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
74075464 ATCTCATGCATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
74075512 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
74075560 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* **
74075608 ATATCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
74075656 AGCCATTTGGTTCTCATACATATTTCATGTTAGCCGTTCGGCTTTACCACATATACAT
1 ----A------TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
74075714 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
74075762 ATCTCATACATATTTCATGTTAGCCGTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
74075810 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
74075858 ATCTCATACATATTTCATGTTAGCCGTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
74075906 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
74075954 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
74076002 ATCTCATACATATTTCACACTAGCCATTCGGCCTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
74076050 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
74076098 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
74076146 ATCTCATACATATTTCATGTTAGCCGTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
74076194 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
74076242 ATCTCATACATATTTCATGTTAGCCGTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
74076290 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
74076338 ATCTCATACATATTTCATGTTAGCCGTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
74076386 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** * *
74076434 ATCTCATACATATTTCATGTTAGCCATTCGGTTTTACCATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
74076482 ATCTCATATATATTTCACATTATCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
74076530 AT
1 AT
74076532 TTATCTTGTA
Statistics
Matches: 955, Mismatches: 103, Indels: 20
0.89 0.10 0.02
Matches are distributed among these distances:
48 908 0.95
52 1 0.00
54 1 0.00
58 45 0.05
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:74075525 original size:96 final size:96
Alignment explanation
Indices: 74075416--74076531 Score: 1827
Period size: 96 Copynumber: 11.5 Consensus size: 96
74075406 ATATACACAC
* * * * *
74075416 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACATATCTCATGCATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
** * * *
74075481 CATTAGCCATTCGGATTTACCACATATATAT
66 TGTTAGCCGTTCGGCTTTACCACATATACAT
* * *
74075512 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
*** * *
74075577 CACTAGCCATTCGGCTTTACCACATATATAT
66 TGTTAGCCGTTCGGCTTTACCACATATACAT
* *** *
74075608 ATATCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACATAGCCATTTGGTTCTCAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT--AT----A--T--ATCTCAT
74075673 ACATATTTCATGTTAGCCGTTCGGCTTTACCACATATACAT
56 ACATATTTCATGTTAGCCGTTCGGCTTTACCACATATACAT
74075714 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
74075779 TGTTAGCCGTTCGGCTTTACCACATATACAT
66 TGTTAGCCGTTCGGCTTTACCACATATACAT
74075810 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
74075875 TGTTAGCCGTTCGGCTTTACCACATATACAT
66 TGTTAGCCGTTCGGCTTTACCACATATACAT
74075906 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
* *
74075971 TATTAGCCATTCGGCTTTACCACATATACAT
66 TGTTAGCCGTTCGGCTTTACCACATATACAT
* *
74076002 ATCTCATACATATTTCACACTAGCCATTCGGCCTTACCACACATATATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
* *
74076067 TATTAGCCATTCGGCTTTACCACATATACAT
66 TGTTAGCCGTTCGGCTTTACCACATATACAT
74076098 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
74076163 TGTTAGCCGTTCGGCTTTACCACATATACAT
66 TGTTAGCCGTTCGGCTTTACCACATATACAT
74076194 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
74076259 TGTTAGCCGTTCGGCTTTACCACATATACAT
66 TGTTAGCCGTTCGGCTTTACCACATATACAT
74076290 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
74076355 TGTTAGCCGTTCGGCTTTACCACATATACAT
66 TGTTAGCCGTTCGGCTTTACCACATATACAT
74076386 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
* * *
74076451 TGTTAGCCATTCGGTTTTACCATATATACAT
66 TGTTAGCCGTTCGGCTTTACCACATATACAT
* * *
74076482 ATCTCATATATATTTCACATTATCCATTCGGCTTTACCACATATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATAT
74076532 TTATCTTGTA
Statistics
Matches: 976, Mismatches: 34, Indels: 20
0.95 0.03 0.02
Matches are distributed among these distances:
96 887 0.91
98 2 0.00
100 1 0.00
102 1 0.00
104 3 0.00
106 82 0.08
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.37
Consensus pattern (96 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
TGTTAGCCGTTCGGCTTTACCACATATACAT
Found at i:74075708 original size:31 final size:31
Alignment explanation
Indices: 74075615--74075709 Score: 94
Period size: 31 Copynumber: 3.2 Consensus size: 31
74075605 TATATATCAT
74075615 ACATATTTCATGTTAGCCATTCGGCTTTACC
1 ACATATTTCATGTTAGCCATTCGGCTTTACC
* * *
74075646 ACATA-TACA---TAGCCATTTGG-TTCT-CAT
1 ACATATTTCATGTTAGCCATTCGGCTT-TAC-C
*
74075673 ACATATTTCATGTTAGCCGTTCGGCTTTACC
1 ACATATTTCATGTTAGCCATTCGGCTTTACC
74075704 ACATAT
1 ACATAT
74075710 ACATATCTCA
Statistics
Matches: 49, Mismatches: 7, Indels: 16
0.68 0.10 0.22
Matches are distributed among these distances:
26 3 0.06
27 16 0.33
28 3 0.06
30 3 0.06
31 21 0.43
32 3 0.06
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (31 bp):
ACATATTTCATGTTAGCCATTCGGCTTTACC
Found at i:74080842 original size:40 final size:40
Alignment explanation
Indices: 74080211--74080837 Score: 842
Period size: 40 Copynumber: 15.7 Consensus size: 40
74080201 CCAGCATGAT
* * * *
74080211 TGCTCTTCGGGAAC-TAGCCCGGATATAACACCAGCATGAA
1 TGCTCTTCGAG-ACTTAGCCCGGATATAACTCTAGCACGAA
* * * *
74080251 TGCTCTTCGGGACTTAACCCTGATATAACTCTAGCACAAA
1 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
* *
74080291 TGCTCTTCGAGATTTAGCCCGGATATAACTCTAGCGCGAA
1 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
* * *
74080331 TGCTCTTCGAGACTTAGCCCGGGTATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
* * * *
74080371 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAA
1 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
* * *
74080411 TGCTCTTCGGGACTTAACCCTGATATAACTCTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
*
74080451 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCGCGAA
1 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
* * *
74080491 TGCTCTTCGAGACTTAGCCCGGGTATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
* * *
74080531 TGCTCTTCGGGACTTAGCCCGGATATAACTCTAGCGCGTA
1 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
* *
74080571 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCGCGTA
1 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
* *
74080611 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCGCGTA
1 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
* *
74080651 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCGCGTA
1 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
* *
74080691 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCGCGTA
1 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
** * *
74080731 TGCTCTTCGAGACTTAGCCCGGGGATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
* * *
74080771 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
* *
74080811 TGCTCTTCGGGACTTAGCCCGGGTATA
1 TGCTCTTCGAGACTTAGCCCGGATATA
74080838 TCACTCTCAA
Statistics
Matches: 536, Mismatches: 50, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
39 2 0.00
40 534 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
Found at i:74081026 original size:37 final size:37
Alignment explanation
Indices: 74080981--74081058 Score: 140
Period size: 37 Copynumber: 2.1 Consensus size: 37
74080971 ATTTATAGTC
*
74080981 ATAA-CACTCTTTTAAAATTGCATCACTTATACCCTT
1 ATAATCACTCTTTCAAAATTGCATCACTTATACCCTT
74081017 ATAATCACTCTTTCAAAATTGCATCACTTATACCCTT
1 ATAATCACTCTTTCAAAATTGCATCACTTATACCCTT
74081054 ATAAT
1 ATAAT
74081059 TCAATCCAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
36 4 0.10
37 36 0.90
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.38
Consensus pattern (37 bp):
ATAATCACTCTTTCAAAATTGCATCACTTATACCCTT
Found at i:74082581 original size:40 final size:40
Alignment explanation
Indices: 74082535--74082759 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
74082525 CTTGCACAAG
* * *
74082535 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
74082575 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * **
74082615 GCCTTCGGGTTTTAGCCCGGATATAATTGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
74082655 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
74082695 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
74082736 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
74082760 CATTCGAATA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
40 128 0.82
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:74082630 original size:80 final size:80
Alignment explanation
Indices: 74082499--74082759 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
74082489 CTCAAGTAAT
* * * * * * *
74082499 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
74082562 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
74082577 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
**
74082641 TTGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
74082657 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
74082722 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
74082738 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
74082760 CATTCGAATA
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.10
80 92 0.60
81 33 0.22
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:74085701 original size:48 final size:48
Alignment explanation
Indices: 74085641--74085991 Score: 567
Period size: 48 Copynumber: 7.3 Consensus size: 48
74085631 ATATACACAC
* *
74085641 ATCTCTTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
74085689 ATCTCATGCATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
74085737 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
74085785 ATATCATACATATTTCACACTAGTCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
74085833 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
74085881 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
74085929 ATCTCATACATATTTCATATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
74085977 ATCTCATACATATTT
1 ATCTCATACATATTT
74085992 TGTAACACCC
Statistics
Matches: 283, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 283 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:74095996 original size:40 final size:40
Alignment explanation
Indices: 74095937--74096084 Score: 251
Period size: 40 Copynumber: 3.7 Consensus size: 40
74095927 GAGCATTGGA
*
74095937 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
74095977 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
74096017 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
74096057 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
74096085 ATGTGTTTGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:74102890 original size:46 final size:46
Alignment explanation
Indices: 74102823--74102989 Score: 182
Period size: 46 Copynumber: 3.6 Consensus size: 46
74102813 AACCCGCCCC
74102823 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTAGGGCATTCGCATCCA
*
74102869 TAAGTGAACTCGGACTCAACTCAACGAGTTAGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTAGG--G-C-A-TTCGCATCCA
* * * * *
74102917 TCA-CGAATTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTAGGGCATTCGCATCCA
*
74102962 TAGGTGAACTCGGACTCAACTCAACGAG
1 TAAGTGAACTCGGACTCAACTCAACGAG
74102990 CTCGGATGCT
Statistics
Matches: 100, Mismatches: 11, Indels: 20
0.76 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 52 0.52
47 26 0.26
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTAGGGCATTCGCATCCA
Found at i:74111430 original size:32 final size:31
Alignment explanation
Indices: 74111388--74111450 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 31
74111378 GTCGAATCCA
74111388 GTGAACTCAGATGCTGTGAAGAAATATTATNG
1 GTGAACTCAGATGCTGTGAAGAAATATTAT-G
*
74111420 GTGAATTCAGATGCTGTGAAGAAATATTATG
1 GTGAACTCAGATGCTGTGAAGAAATATTATG
74111451 CTTAAGATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 1 0.03
32 29 0.97
ACGTcount: A:0.35, C:0.08, G:0.25, T:0.30
Consensus pattern (31 bp):
GTGAACTCAGATGCTGTGAAGAAATATTATG
Found at i:74112436 original size:73 final size:69
Alignment explanation
Indices: 74112315--74112583 Score: 288
Period size: 73 Copynumber: 3.7 Consensus size: 69
74112305 TTTGGGTACT
* * * ** *
74112315 CTGAGGTATCTTTAATTCATGTTTTCAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTC
1 CTGAGGTATTTTTAGTTTATG-TTTC-AAAAAT--ACTCATATTGTGAGAGGTGAGTCGAGCCTC
74112380 AGGTCACACG
62 AGGT--CACG
*
74112390 CTGAGGTATTTTTAGTTTATGTTTCAAAAATTGACTCATATTGTGAGAGGTGAGTCAAGCCTCAG
1 CTGAGGTATTTTTAGTTTATGTTTCAAAAA-T-ACTCATATTGTGAGAGGTGAGTCGAGCCTCAG
74112455 GTCACG
64 GTCACG
* * * *
74112461 CTGAGGTATTTTAATTCCTTTTGTTTCAAAAATCAGCTCATATTGTGAGGGGTGAGTCGAGCCTC
1 CTGAGGTATTTTTAGT--TTATGTTTCAAAAAT-A-CTCATATTGTGAGAGGTGAGTCGAGCCTC
* *
74112526 GGGGCACG
62 AGGTCACG
*
74112534 CTGAGGTATTTTTAGTTTATGTTT-AGAAAATACTCATATTGCGAGAGGTG
1 CTGAGGTATTTTTAGTTTATGTTTCA-AAAATACTCATATTGTGAGAGGTG
74112584 GGTTGAACCT
Statistics
Matches: 168, Mismatches: 21, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
69 16 0.10
70 2 0.01
71 30 0.18
72 2 0.01
73 95 0.57
74 5 0.03
75 18 0.11
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (69 bp):
CTGAGGTATTTTTAGTTTATGTTTCAAAAATACTCATATTGTGAGAGGTGAGTCGAGCCTCAGGT
CACG
Found at i:74112735 original size:129 final size:128
Alignment explanation
Indices: 74112484--74112834 Score: 532
Period size: 129 Copynumber: 2.8 Consensus size: 128
74112474 ATTCCTTTTG
* * * * * * * * *
74112484 TTTCAAAAATCAGCTCATATTGTGAGGGGTGAGTCGAGCCTCGGGGCACGCTGAGGTATTTTTAG
1 TTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
* * *
74112549 TTTATGTT-T---AGAAAA-TACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTT
65 TTTCTGTTGTCAAAAAAAACAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTT
74112608 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
74112673 TTCTGTTGTCAAAAAAAAACAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTT
66 TTCTGTTGTC-AAAAAAAACAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTT
74112737 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
*
74112802 TTCTGTTGTCAAAAAAATCAACTCATATTGCGA
66 TTCTGTTGTCAAAAAAAACAACTCATATTGCGA
74112835 AAAGTGAGTT
Statistics
Matches: 208, Mismatches: 13, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
123 58 0.28
124 5 0.02
128 27 0.13
129 118 0.57
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (128 bp):
TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
TTCTGTTGTCAAAAAAAACAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTT
Found at i:74116402 original size:40 final size:40
Alignment explanation
Indices: 74116335--74117311 Score: 1778
Period size: 40 Copynumber: 24.4 Consensus size: 40
74116325 ACCCAAGCAT
* * **
74116335 CTTCGGGATTTAG-CCGAATATAACAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * * *
74116374 CTTCGGGTCTTGGCCCGGATATAGCAACTCACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
*
74116414 CTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGT-AACTCGCACAAATGC
* * *
74116454 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* *
74116494 ATTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* **
74116534 CATCGGGACTTAGCCCGTTTATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74116574 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74116614 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74116654 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74116694 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74116734 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74116774 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74116814 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74116854 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74116894 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74116934 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74116974 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74117014 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74117054 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74117094 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74117134 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74117174 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74117214 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74117254 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
74117294 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
74117312 TTATCATCCA
Statistics
Matches: 909, Mismatches: 26, Indels: 5
0.97 0.03 0.01
Matches are distributed among these distances:
39 11 0.01
40 896 0.99
41 2 0.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:74119205 original size:48 final size:48
Alignment explanation
Indices: 74119134--74119320 Score: 293
Period size: 48 Copynumber: 3.9 Consensus size: 48
74119124 TACGGCTGTC
74119134 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
* *
74119182 ACATATTTCACACTAGCCATTCGGCTTTACAACATATATATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
*** *
74119230 ACATATTTCATGTTAGCCATTCGGCTTTACCACAAATACATATCTCAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
* * *
74119278 ATATATTTCACATTAGCCATTCGGCTTTACCACATATATATAT
1 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
74119321 TTATCTTGTA
Statistics
Matches: 126, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 126 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (48 bp):
ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
Found at i:74128808 original size:39 final size:40
Alignment explanation
Indices: 74128707--74128891 Score: 193
Period size: 40 Copynumber: 4.7 Consensus size: 40
74128697 TTGAATGATG
* * * *
74128707 TCCGGGGTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
74128746 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
74128787 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
* *
74128827 T-CGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
74128865 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
74128892 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 16
0.80 0.09 0.10
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 80 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:74128913 original size:79 final size:79
Alignment explanation
Indices: 74128760--74128924 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
74128750 GGACTAAGAT
* * **
74128760 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
* *
74128825 ATTCGGGTTAAGTC
66 ATTCCGGTTAAATC
* *
74128839 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
74128902 TATA-TCCGGTTAAATT
63 TAAATTCCGGTTAAATC
74128918 CCGAAGG
1 CCGAAGG
74128925 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.67
80 22 0.30
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATTCCGGTTAAATC
Found at i:74132029 original size:75 final size:75
Alignment explanation
Indices: 74131906--74132055 Score: 282
Period size: 75 Copynumber: 2.0 Consensus size: 75
74131896 TCTATGTCTC
74131906 TATCTTCTCAAAGTCATAAGCTTCGATGTTCAAGACAAAGCATCTCCCCAATTGGACTTGATAGA
1 TATCTTCTCAAAGTCATAAGCTTCGATGTTCAAGACAAAGCATCTCCCCAATTGGACTTGATAGA
74131971 TGACATATTA
66 TGACATATTA
* *
74131981 TATCTTCTTAGAGTCATAAGCTTCGATGTTCAAGACAAAGCATCTCCCCAATTGGACTTGATAGA
1 TATCTTCTCAAAGTCATAAGCTTCGATGTTCAAGACAAAGCATCTCCCCAATTGGACTTGATAGA
74132046 TGACATATTA
66 TGACATATTA
74132056 GTCTTTCAAT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (75 bp):
TATCTTCTCAAAGTCATAAGCTTCGATGTTCAAGACAAAGCATCTCCCCAATTGGACTTGATAGA
TGACATATTA
Found at i:74138867 original size:47 final size:47
Alignment explanation
Indices: 74137922--74138859 Score: 1777
Period size: 47 Copynumber: 20.0 Consensus size: 47
74137912 TTAGGATTTT
** * *
74137922 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74137969 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138016 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138063 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138110 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138157 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138204 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138251 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138298 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138345 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138392 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138439 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138486 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138533 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138580 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138627 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138674 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74138721 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
74138768 ATGTGATGAATGTGAGCATGCATATGTCTGATAAGGCCGAATAGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
74138815 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
74138860 TAGTGTGAAA
Statistics
Matches: 876, Mismatches: 15, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 876 1.00
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:74139130 original size:37 final size:37
Alignment explanation
Indices: 74139022--74139130 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
74139012 GGAAATATAT
*
74139022 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
74139059 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
74139096 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
74139131 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:74146696 original size:30 final size:32
Alignment explanation
Indices: 74146627--74146698 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
74146617 AAAATGTTAG
* *
74146627 TGAGTCACTAATTTGTCACTTTTCGATAACGT
1 TGAGTGACTAATTTGTCACTTTTCGATAAAGT
* *
74146659 T-AGTGACTGATTTGTCATTTTTC-A-AAAGT
1 TGAGTGACTAATTTGTCACTTTTCGATAAAGT
74146688 TGAGTGACTAA
1 TGAGTGACTAA
74146699 ATTGAAACCT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
29 5 0.15
30 9 0.26
31 19 0.56
32 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (32 bp):
TGAGTGACTAATTTGTCACTTTTCGATAAAGT
Found at i:74147162 original size:19 final size:18
Alignment explanation
Indices: 74147118--74147199 Score: 69
Period size: 19 Copynumber: 4.3 Consensus size: 18
74147108 ATATGAAAAA
*
74147118 ATAAAAATTGATATAAACTT
1 ATAAAAATT--TATAAAATT
74147138 AT-AAAATTTATAAATATT
1 ATAAAAATTTATAAA-ATT
* *
74147156 ATAAAAATATAAAAAAATT
1 ATAAAAAT-TTATAAAATT
74147175 ATAAAAA-TTATAATGAATT
1 ATAAAAATTTATAA--AATT
74147194 ATAAAA
1 ATAAAA
74147200 TCAATAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
17 10 0.19
18 4 0.08
19 31 0.60
20 7 0.13
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.34
Consensus pattern (18 bp):
ATAAAAATTTATAAAATT
Found at i:74147193 original size:10 final size:9
Alignment explanation
Indices: 74147065--74147199 Score: 84
Period size: 9 Copynumber: 15.0 Consensus size: 9
74147055 TCATAAAATG
74147065 ATTA-AAAA
1 ATTATAAAA
*
74147073 TATTTTAAAA
1 -ATTATAAAA
*
74147083 AATA-AAAA
1 ATTATAAAA
* *
74147091 ATCATAACA
1 ATTATAAAA
*
74147100 ATTAT-TAA
1 ATTATAAAA
74147108 A-TATGAAAA
1 ATTAT-AAAA
74147117 A--ATAAAA
1 ATTATAAAA
74147124 ATTGATATAAA
1 ATT-ATA-AAA
*
74147135 CTTATAAAA
1 ATTATAAAA
* *
74147144 TTTATAAAT
1 ATTATAAAA
74147153 ATTATAAAA
1 ATTATAAAA
*
74147162 ATATAAAAAA
1 AT-TATAAAA
74147172 ATTATAAAA
1 ATTATAAAA
*
74147181 ATTATAATGA
1 ATTATAA-AA
74147191 ATTATAAAA
1 ATTATAAAA
74147200 TCAATAAAAA
Statistics
Matches: 97, Mismatches: 19, Indels: 20
0.71 0.14 0.15
Matches are distributed among these distances:
7 8 0.08
8 10 0.10
9 48 0.49
10 26 0.27
11 5 0.05
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (9 bp):
ATTATAAAA
Found at i:74147275 original size:22 final size:22
Alignment explanation
Indices: 74147232--74147284 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 22
74147222 TATTTAGAAT
**
74147232 TTTATAAAAAAACATACTAAAA
1 TTTATAAAAAAACATAAAAAAA
74147254 TTCTATAAAAAAA-ATAAAAAAA
1 TT-TATAAAAAAACATAAAAAAA
74147276 -TTATAAAAA
1 TTTATAAAAA
74147285 GATTGTAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 8 0.29
21 1 0.04
22 9 0.32
23 10 0.36
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (22 bp):
TTTATAAAAAAACATAAAAAAA
Found at i:74147765 original size:9 final size:9
Alignment explanation
Indices: 74147753--74147977 Score: 77
Period size: 10 Copynumber: 23.8 Consensus size: 9
74147743 TTTTATGATT
74147753 TTTTTATAA
1 TTTTTATAA
74147762 TTTTTATAA
1 TTTTTATAA
*
74147771 GTTTATATCAA
1 -TTTTTAT-AA
*
74147782 TTTTAAT-A
1 TTTTTATAA
74147790 TTTTTATAA
1 TTTTTATAA
74147799 GTTTTT-TACCA
1 -TTTTTATA--A
*
74147810 TTTTTATTA
1 TTTTTATAA
*
74147819 TTTTTAAGAA
1 TTTTT-ATAA
* * *
74147829 TTCTAATACG
1 TTTTTATA-A
*
74147839 TTTTTTTAAA
1 TTTTTAT-AA
*
74147849 TATTTAAAATAA
1 T-TTT--TATAA
*
74147861 GTTTTATTAA
1 TTTTTA-TAA
* *
74147871 -TTTCATTAC
1 TTTTTA-TAA
74147880 TTTTTATAA
1 TTTTTATAA
*
74147889 TTTTTTAGAA
1 -TTTTTATAA
*
74147899 CTTATTT-GAA
1 -TT-TTTATAA
74147909 TTTTTAT-A
1 TTTTTATAA
74147917 TTTTTATAA
1 TTTTTATAA
74147926 TATTTTAT-A
1 T-TTTTATAA
74147935 TTTTTATAA
1 TTTTTATAA
*
74147944 TTTTAATAA
1 TTTTTATAA
* *
74147953 GGTTATATAA
1 -TTTTTATAA
*
74147963 TTTTAAT-A
1 TTTTTATAA
74147971 TTTTTAT
1 TTTTTAT
74147978 TTTTTAATAT
Statistics
Matches: 160, Mismatches: 34, Indels: 45
0.67 0.14 0.19
Matches are distributed among these distances:
8 31 0.19
9 49 0.31
10 63 0.39
11 14 0.09
12 2 0.01
13 1 0.01
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.60
Consensus pattern (9 bp):
TTTTTATAA
Found at i:74147812 original size:28 final size:29
Alignment explanation
Indices: 74147752--74147824 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
74147742 TTTTTATGAT
*
74147752 TTTTTTATAATTTTTATAAGTTTATATCAA
1 TTTTTAAT-ATTTTTATAAGTTTATATCAA
* *
74147782 -TTTTAATATTTTTATAAGTTT-TTTACCA
1 TTTTTAATATTTTTATAAGTTTATAT-CAA
*
74147810 TTTTTATTATTTTTA
1 TTTTTAATATTTTTA
74147825 AGAATTCTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 2 0.05
28 16 0.43
29 19 0.51
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (29 bp):
TTTTTAATATTTTTATAAGTTTATATCAA
Found at i:74147921 original size:8 final size:8
Alignment explanation
Indices: 74147908--74148040 Score: 69
Period size: 8 Copynumber: 16.0 Consensus size: 8
74147898 ACTTATTTGA
74147908 ATTTTTAT
1 ATTTTTAT
74147916 ATTTTTAT
1 ATTTTTAT
74147924 AATATTTTAT
1 -AT-TTTTAT
74147934 ATTTTTAT
1 ATTTTTAT
*
74147942 AATTTTAAT
1 -ATTTTTAT
* *
74147951 AAGGTTATAT
1 -A-TTTTTAT
*
74147961 AATTTTAAT
1 -ATTTTTAT
74147970 ATTTTTAT
1 ATTTTTAT
74147978 -TTTTTA-
1 ATTTTTAT
*
74147984 ATATTTAAT
1 AT-TTTTAT
74147993 ATTTTT-T
1 ATTTTTAT
* *
74148000 -TTCTAAT
1 ATTTTTAT
74148007 -TTTTTAT
1 ATTTTTAT
*
74148014 TTTTTTAT
1 ATTTTTAT
74148022 GATTTTTAAT
1 -ATTTTT-AT
74148032 CATTTTTAT
1 -ATTTTTAT
74148041 GAGAAAATAT
Statistics
Matches: 98, Mismatches: 16, Indels: 21
0.73 0.12 0.16
Matches are distributed among these distances:
6 3 0.03
7 14 0.14
8 35 0.36
9 26 0.27
10 20 0.20
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (8 bp):
ATTTTTAT
Found at i:74147931 original size:18 final size:18
Alignment explanation
Indices: 74147910--74147944 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
74147900 TTATTTGAAT
74147910 TTTTATATTTTTATAATA
1 TTTTATATTTTTATAATA
74147928 TTTTATATTTTTATAAT
1 TTTTATATTTTTATAAT
74147945 TTTAATAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTATATTTTTATAATA
Found at i:74149548 original size:27 final size:27
Alignment explanation
Indices: 74149507--74149580 Score: 103
Period size: 27 Copynumber: 2.7 Consensus size: 27
74149497 GGCCATGACA
* *
74149507 TACTCTGAATAGATCACCTTTATAGTG
1 TACTCTGAATGGATCGCCTTTATAGTG
* * *
74149534 TACTCTGAATGGATCGCCATTGTGGTG
1 TACTCTGAATGGATCGCCTTTATAGTG
74149561 TACTCTGAATGGATCGCCTT
1 TACTCTGAATGGATCGCCTT
74149581 AATGGCGTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (27 bp):
TACTCTGAATGGATCGCCTTTATAGTG
Found at i:74152000 original size:50 final size:49
Alignment explanation
Indices: 74151937--74152069 Score: 153
Period size: 48 Copynumber: 2.7 Consensus size: 49
74151927 GGTATGTTAT
*
74151937 CATGTAAGACCATGTCTGGGGTATGGCATTGGCATTGACATAT-GAGATCC
1 CATGTAAGACCATGTCTGGGATATGGCATTGGCATT--CATATGGAGATCC
* * * * *
74151987 CATGTAAGACCATGTCTGGGACATGGTATTGGCA-TCGTGTGGTGATCC
1 CATGTAAGACCATGTCTGGGATATGGCATTGGCATTCATATGGAGATCC
* * *
74152035 CATGTAAGACCATATCTAGGATATGGCGTTGGCAT
1 CATGTAAGACCATGTCTGGGATATGGCATTGGCAT
74152070 CTTATTATGT
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
47 3 0.04
48 35 0.50
49 1 0.01
50 31 0.44
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (49 bp):
CATGTAAGACCATGTCTGGGATATGGCATTGGCATTCATATGGAGATCC
Found at i:74155307 original size:11 final size:11
Alignment explanation
Indices: 74155293--74155317 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
74155283 ATTTTTTTAG
74155293 ATTATGACATC
1 ATTATGACATC
74155304 ATTATGACATC
1 ATTATGACATC
74155315 ATT
1 ATT
74155318 TTCCGCCACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (11 bp):
ATTATGACATC
Found at i:74166963 original size:20 final size:21
Alignment explanation
Indices: 74166926--74166964 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
74166916 TAATGACTGG
* *
74166926 AAATTTTTAATTTTGAGACCA
1 AAATTTTTAATATCGAGACCA
74166947 AAATTTTTAA-ATCGAGAC
1 AAATTTTTAATATCGAGAC
74166965 GTTTCGAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (21 bp):
AAATTTTTAATATCGAGACCA
Found at i:74168777 original size:16 final size:18
Alignment explanation
Indices: 74168756--74168793 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
74168746 TTCTATATTG
74168756 ATTTTACT-TT-TATTTT
1 ATTTTACTATTGTATTTT
74168772 ATTTTACTATTGTATTTT
1 ATTTTACTATTGTATTTT
74168790 ATTT
1 ATTT
74168794 AAATAAGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (18 bp):
ATTTTACTATTGTATTTT
Found at i:74170747 original size:20 final size:20
Alignment explanation
Indices: 74170722--74170781 Score: 120
Period size: 20 Copynumber: 3.0 Consensus size: 20
74170712 GGAAGAGTCT
74170722 TTAAGAGATAGGTTAGGTAG
1 TTAAGAGATAGGTTAGGTAG
74170742 TTAAGAGATAGGTTAGGTAG
1 TTAAGAGATAGGTTAGGTAG
74170762 TTAAGAGATAGGTTAGGTAG
1 TTAAGAGATAGGTTAGGTAG
74170782 CATAGCAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.30
Consensus pattern (20 bp):
TTAAGAGATAGGTTAGGTAG
Found at i:74174430 original size:93 final size:93
Alignment explanation
Indices: 74174318--74174488 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
74174308 GCCCATAAGT
* *
74174318 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74174383 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
74174411 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74174476 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74174489 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74174485 original size:46 final size:46
Alignment explanation
Indices: 74174310--74174485 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
74174300 TGTAACCCGC
* * *
74174310 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
74174356 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
74174406 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
74174449 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74174486 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74193076 original size:16 final size:16
Alignment explanation
Indices: 74193065--74193110 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
74193055 ACTGTAATGA
*
74193065 AATAGGGTTGTAATTG
1 AATAGAGTTGTAATTG
*
74193081 AATAGAGCTGTAATTG
1 AATAGAGTTGTAATTG
74193097 AATAGAGTTGTAAT
1 AATAGAGTTGTAAT
74193111 CAGTAATTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.26, T:0.35
Consensus pattern (16 bp):
AATAGAGTTGTAATTG
Found at i:74193344 original size:59 final size:60
Alignment explanation
Indices: 74193270--74193449 Score: 222
Period size: 59 Copynumber: 2.9 Consensus size: 60
74193260 ATTGTTATTA
* * *
74193270 ATTTATAATAGAATTATTATTAAATATAATTTAATAATAAATAATAA-AT-AATTTAATCAT
1 ATTT-TAATATAATTATTATTAAATATAATTTAATAA-AAATAATAATATAAATTTAATAAC
*
74193330 ATTTTAATATAATTATTATTAAATATAATTTAATAAAGATAATAATATAAATTTAATAAC
1 ATTTTAATATAATTATTATTAAATATAATTTAATAAAAATAATAATATAAATTTAATAAC
* *
74193390 ATTCTTAATATAATTATTATTAAAATATGAA-TGAATAAAAATCATAATATATAATATTAA
1 ATT-TTAATATAATTATTATT-AAATAT-AATTTAATAAAAATAATAATATA-AAT-TTAA
74193450 AAAATAATAT
Statistics
Matches: 106, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
58 8 0.08
59 33 0.31
60 16 0.15
61 17 0.16
62 23 0.22
63 5 0.05
64 4 0.04
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (60 bp):
ATTTTAATATAATTATTATTAAATATAATTTAATAAAAATAATAATATAAATTTAATAAC
Found at i:74194185 original size:25 final size:25
Alignment explanation
Indices: 74194151--74194203 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
74194141 AATTTATTGC
*
74194151 GAATCTCAACAATGCCTTCTCTGCT
1 GAATCTCAACAATGCATTCTCTGCT
74194176 GAATCTCAACAATGCATTCTCTGCT
1 GAATCTCAACAATGCATTCTCTGCT
74194201 GAA
1 GAA
74194204 ATATCAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.30
Consensus pattern (25 bp):
GAATCTCAACAATGCATTCTCTGCT
Found at i:74198553 original size:40 final size:40
Alignment explanation
Indices: 74198499--74198656 Score: 262
Period size: 40 Copynumber: 4.0 Consensus size: 40
74198489 CGGATGTAAC
* *
74198499 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
74198539 AACCCGTACGAATGCCTTCGGGACTTAACCTGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
74198579 AACCCGCACGAATGCCTTAGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
74198619 AACCCGCACGAATGTCTTCGGGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
74198657 TTTTTTTTCC
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 109 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:74203582 original size:34 final size:34
Alignment explanation
Indices: 74203505--74203570 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
74203495 GCATCTCTTA
* * **
74203505 TACTG-TACTAAACTGGGCTAAGGCCCACATTGT
1 TACTGCTACTATATTGGGCTAAGGCCCACACCGT
74203538 TACTGCTACTATATTGGGCTAAGGCCCACACCG
1 TACTGCTACTATATTGGGCTAAGGCCCACACCG
74203571 ATTTTGCTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 5 0.18
34 23 0.82
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (34 bp):
TACTGCTACTATATTGGGCTAAGGCCCACACCGT
Found at i:74211810 original size:40 final size:40
Alignment explanation
Indices: 74211755--74211973 Score: 388
Period size: 40 Copynumber: 5.5 Consensus size: 40
74211745 TCGGATGATT
74211755 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
74211795 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
74211835 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
74211875 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
74211915 ACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
*
74211955 TCC-GGCTAAATCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
74211974 TACTTGGTTT
Statistics
Matches: 174, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
39 17 0.10
40 157 0.90
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:74219689 original size:36 final size:36
Alignment explanation
Indices: 74219642--74219712 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
74219632 GTAAAGCACC
*
74219642 TCAGTTAGAATAGATCCAGAAGGTTGCTGAACTGAG
1 TCAGTTAGAATAGATCCAAAAGGTTGCTGAACTGAG
74219678 TCAGTTAGAATAGATCCAAAAGGTTGCTGAACTGA
1 TCAGTTAGAATAGATCCAAAAGGTTGCTGAACTGA
74219713 ATAGAGTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (36 bp):
TCAGTTAGAATAGATCCAAAAGGTTGCTGAACTGAG
Found at i:74220371 original size:16 final size:18
Alignment explanation
Indices: 74220350--74220386 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
74220340 CTCATTCGTA
74220350 CATTTAG-GTA-AAATTG
1 CATTTAGAGTAGAAATTG
*
74220366 CATTTAGATTAGAAATTG
1 CATTTAGAGTAGAAATTG
74220384 CAT
1 CAT
74220387 AGGGATCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 2 0.11
18 9 0.50
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (18 bp):
CATTTAGAGTAGAAATTG
Found at i:74233217 original size:46 final size:47
Alignment explanation
Indices: 74233074--74233287 Score: 158
Period size: 47 Copynumber: 4.6 Consensus size: 47
74233064 GAATGCCAGC
* *
74233074 GTAAGACCATGTCTGGGCCATGGCATTGGC-ATCGAGACGAGT-GCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCTA-CGAGA-GA-TAGCTAGT
* * * *
74233122 GTAAGA-CATGTCTGGGACAT-GCATCGGCCT-CAAGACATAAGCCAAT
1 GTAAGACCATGTCTGGGACATGGCATCGG-CTACGAGAGAT-AGCTAGT
*
74233168 GTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGATAGTTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCTACGAGA-GATAGCTAGT
* * * *
74233214 GTAAGACCTTGTCTTGGACATGGCATCGACATA--AGATATGAGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGC-TACGAGAGAT-AGCTAGT
* ** *
74233261 ATAAGACTGTGTTTGGGACATGGCATC
1 GTAAGACCATGTCTGGGACATGGCATC
74233288 AGCACCTTAC
Statistics
Matches: 135, Mismatches: 21, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 57 0.42
47 59 0.44
48 13 0.10
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
GTAAGACCATGTCTGGGACATGGCATCGGCTACGAGAGATAGCTAGT
Found at i:74239520 original size:53 final size:54
Alignment explanation
Indices: 74239453--74239657 Score: 189
Period size: 53 Copynumber: 3.8 Consensus size: 54
74239443 CCTTTTTAAG
* * *
74239453 CTTACCATTACCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAA
1 CTTACCATTGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATAGAA
* * * * * *
74239506 CTCACCATTGCCATGCCTTGGCATGGTCTTACTTGGGATCTTTGCCTTATCGTAG
1 CTTACCATTGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATAG-AA
* * * * * * * * * * *
74239561 TTTATCAATGCCATGTCTTGACTTGGTCCTACATGATTTCCTTGCCTTGTAAAA
1 CTTACCATTGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATAGAA
*
74239615 CTTACCAATT-CCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 CTTACC-ATTGCCATGCCTTGACATGGTCTTACTTGGTATCCTT
74239658 AAACCCTAAT
Statistics
Matches: 114, Mismatches: 35, Indels: 5
0.74 0.23 0.03
Matches are distributed among these distances:
53 43 0.38
54 32 0.28
55 39 0.34
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.39
Consensus pattern (54 bp):
CTTACCATTGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATAGAA
Found at i:74247796 original size:16 final size:17
Alignment explanation
Indices: 74247775--74247816 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 17
74247765 AAAGGGGTAG
74247775 TTATTTTCTTTAG-TTT
1 TTATTTTCTTTAGATTT
*
74247791 TTATTTCTTTTTAGATTT
1 TTATTT-TCTTTAGATTT
74247809 TTAATTTT
1 TT-ATTTT
74247817 ATTTCTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 6 0.27
17 6 0.27
18 6 0.27
19 4 0.18
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.74
Consensus pattern (17 bp):
TTATTTTCTTTAGATTT
Found at i:74258056 original size:118 final size:118
Alignment explanation
Indices: 74257905--74258139 Score: 416
Period size: 118 Copynumber: 2.0 Consensus size: 118
74257895 GAGTCTAAGA
74257905 ATATAAATTTTATCTTATAAACATTTTTGTACAAATTATAATGATTTTATAAAAACAGAACAGGG
1 ATATAAATTTTATCTTATAAACATTTTTGTACAAATTATAATGATTTTATAAAAACAGAACAGGG
** *
74257970 GATTTTGGAGTCATTCTGACACTGTCCCACACAACTTTAAATATCTCTTTATC
66 GATTTCAGAGTCATTCTGACACTATCCCACACAACTTTAAATATCTCTTTATC
* * *
74258023 ATATAAATTTTATCTTATAAACATTTTTTTACAAATTATAATGATTTTCTAAAAATAGAACAGGG
1 ATATAAATTTTATCTTATAAACATTTTTGTACAAATTATAATGATTTTATAAAAACAGAACAGGG
74258088 GATTTCAGAGTCATTCTGACACTATCCCACACAACTTTAAATATCTCTTTAT
66 GATTTCAGAGTCATTCTGACACTATCCCACACAACTTTAAATATCTCTTTAT
74258140 AGGGAATTTC
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
118 111 1.00
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39
Consensus pattern (118 bp):
ATATAAATTTTATCTTATAAACATTTTTGTACAAATTATAATGATTTTATAAAAACAGAACAGGG
GATTTCAGAGTCATTCTGACACTATCCCACACAACTTTAAATATCTCTTTATC
Found at i:74263431 original size:75 final size:75
Alignment explanation
Indices: 74263308--74263457 Score: 282
Period size: 75 Copynumber: 2.0 Consensus size: 75
74263298 ATTGAAAGAC
74263308 TAATATGTCATCTATCAAGTCCAATTGGGGAGATGCTTTGTCTTGAACATCGAAGCTTATGACTC
1 TAATATGTCATCTATCAAGTCCAATTGGGGAGATGCTTTGTCTTGAACATCGAAGCTTATGACTC
74263373 TAAGAAGATA
66 TAAGAAGATA
*
74263383 TAATATGTCATCTATCAAGTCCAATTGGGGAGATGCTTTGTCTTGAACATCGAAGCTTATGACTT
1 TAATATGTCATCTATCAAGTCCAATTGGGGAGATGCTTTGTCTTGAACATCGAAGCTTATGACTC
*
74263448 TGAGAAGATA
66 TAAGAAGATA
74263458 GAGACATAGA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (75 bp):
TAATATGTCATCTATCAAGTCCAATTGGGGAGATGCTTTGTCTTGAACATCGAAGCTTATGACTC
TAAGAAGATA
Found at i:74268253 original size:23 final size:22
Alignment explanation
Indices: 74268202--74268253 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
74268192 CCTCGTCTTT
*
74268202 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
74268224 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
74268247 TTCTTTT
1 TTCTTTT
74268254 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:74270685 original size:6 final size:6
Alignment explanation
Indices: 74270674--74270698 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
74270664 TAAATAAATT
74270674 AATAAA AATAAA AATAAA AATAAA A
1 AATAAA AATAAA AATAAA AATAAA A
74270699 CTTTACAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:74272098 original size:23 final size:22
Alignment explanation
Indices: 74272046--74272098 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
74272036 TCCACGTCTT
*
74272046 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
74272068 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
74272091 TTTCTTTT
1 TTTCTTTT
74272099 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:74275897 original size:20 final size:20
Alignment explanation
Indices: 74275844--74275897 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
74275834 GCTGAAAGTA
*
74275844 AGCTCAGTTGAGCTCAAACG
1 AGCTGAGTTGAGCTCAAACG
**** *
74275864 AGCTGAAACAAGCTCAAATG
1 AGCTGAGTTGAGCTCAAACG
74275884 AGCTGAGTTGAGCT
1 AGCTGAGTTGAGCT
74275898 GGACGGTGCT
Statistics
Matches: 24, Mismatches: 10, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.20
Consensus pattern (20 bp):
AGCTGAGTTGAGCTCAAACG
Found at i:74277567 original size:11 final size:12
Alignment explanation
Indices: 74277537--74277568 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
74277527 TTTCACTCTT
74277537 CTCTTTTTCAAA
1 CTCTTTTTCAAA
74277549 CTCTTTTTCAAA
1 CTCTTTTTCAAA
*
74277561 TTCTTTTT
1 CTCTTTTT
74277569 TCGCTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.22, G:0.00, T:0.59
Consensus pattern (12 bp):
CTCTTTTTCAAA
Found at i:74277580 original size:27 final size:27
Alignment explanation
Indices: 74277550--74277611 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
74277540 TTTTTCAAAC
*
74277550 TCTTTTTCAAATTCTT-TTTTC-GCTTTT
1 TCTTTTTC-AATT-TTCTTTTCTGCATTT
*
74277577 TCTTTTTCAATTTTCTTTTCTTCATTT
1 TCTTTTTCAATTTTCTTTTCTGCATTT
74277604 TCTTTTTC
1 TCTTTTTC
74277612 TCTCACTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 9 0.29
27 20 0.65
ACGTcount: A:0.10, C:0.19, G:0.02, T:0.69
Consensus pattern (27 bp):
TCTTTTTCAATTTTCTTTTCTGCATTT
Found at i:74277590 original size:13 final size:12
Alignment explanation
Indices: 74277574--74277693 Score: 63
Period size: 12 Copynumber: 10.0 Consensus size: 12
74277564 TTTTTTCGCT
74277574 TTTTCTTTTTCAA
1 TTTTCTTTTTC-A
74277587 TTTTCTTTTCTTCA
1 TTTTC-TTT-TTCA
74277601 TTTTCTTTTTC-
1 TTTTCTTTTTCA
** *
74277612 TCTCACTTTTTTGA
1 T-TTTC-TTTTTCA
74277626 -TTTCTTTTTC-
1 TTTTCTTTTTCA
** *
74277636 TTTTGCAATTTCT
1 TTTT-CTTTTTCA
*
74277649 TTTTCTTTTTCG
1 TTTTCTTTTTCA
*
74277661 TTTTCTTTTT-G
1 TTTTCTTTTTCA
74277672 TTTTC--TTTCA
1 TTTTCTTTTTCA
*
74277682 ATTTCTTTTTCA
1 TTTTCTTTTTCA
74277694 ATCTCTTTCT
Statistics
Matches: 83, Mismatches: 13, Indels: 23
0.70 0.11 0.19
Matches are distributed among these distances:
9 3 0.04
10 4 0.05
11 15 0.18
12 32 0.39
13 17 0.20
14 9 0.11
15 3 0.04
ACGTcount: A:0.08, C:0.17, G:0.03, T:0.71
Consensus pattern (12 bp):
TTTTCTTTTTCA
Found at i:74277603 original size:14 final size:14
Alignment explanation
Indices: 74277552--74277610 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
74277542 TTTCAAACTC
*
74277552 TTTTTCAA-ATTCT
1 TTTTTCAATTTTCT
**
74277565 TTTTTCGCTTTT-T
1 TTTTTCAATTTTCT
74277578 CTTTTTCAATTTTCT
1 -TTTTTCAATTTTCT
74277593 TTTCTTC-ATTTTCT
1 TTT-TTCAATTTTCT
74277607 TTTT
1 TTTT
74277611 CTCTCACTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
13 8 0.22
14 25 0.68
15 4 0.11
ACGTcount: A:0.10, C:0.17, G:0.02, T:0.71
Consensus pattern (14 bp):
TTTTTCAATTTTCT
Found at i:74277692 original size:6 final size:6
Alignment explanation
Indices: 74277572--74277679 Score: 67
Period size: 6 Copynumber: 17.7 Consensus size: 6
74277562 TCTTTTTTCG
* * * **
74277572 CTTTTT CTTTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTCTCA CTTTTT
1 CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT
* * ** *
74277623 -TGATTT CTTTTT CTTTTG CAATTT CTTTTT CTTTTT CGTTTT CTTTTT
1 CT-TTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
*
74277671 -GTTTT CTTT
1 CTTTTT CTTT
74277680 CAATTTCTTT
Statistics
Matches: 74, Mismatches: 23, Indels: 10
0.69 0.21 0.09
Matches are distributed among these distances:
5 5 0.07
6 56 0.76
7 10 0.14
8 3 0.04
ACGTcount: A:0.06, C:0.18, G:0.04, T:0.72
Consensus pattern (6 bp):
CTTTTT
Found at i:74278778 original size:12 final size:12
Alignment explanation
Indices: 74278763--74278787 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74278753 TTTTTTTCGA
74278763 TTTTTTTGAATT
1 TTTTTTTGAATT
74278775 TTTTTTTGAATT
1 TTTTTTTGAATT
74278787 T
1 T
74278788 CTATTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (12 bp):
TTTTTTTGAATT
Found at i:74278880 original size:11 final size:12
Alignment explanation
Indices: 74278864--74278894 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
74278854 CCAACTCAAA
74278864 TTTTTTTTGA-T
1 TTTTTTTTGACT
74278875 TTTTTTTTGACT
1 TTTTTTTTGACT
74278887 TTTTTTTT
1 TTTTTTTT
74278895 ACATTACGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.84
Consensus pattern (12 bp):
TTTTTTTTGACT
Found at i:74280156 original size:37 final size:37
Alignment explanation
Indices: 74280106--74280179 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
74280096 CATTGTTCCC
74280106 ACAAACCATGAATAAATTACGAGTAATAAATCAAATG
1 ACAAACCATGAATAAATTACGAGTAATAAATCAAATG
*
74280143 ACAAACCATGAATAAATTGCGAGTAATAAATCAAATG
1 ACAAACCATGAATAAATTACGAGTAATAAATCAAATG
74280180 GTAAACATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (37 bp):
ACAAACCATGAATAAATTACGAGTAATAAATCAAATG
Found at i:74281110 original size:23 final size:22
Alignment explanation
Indices: 74281059--74281110 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
74281049 CCTCGTCTTT
*
74281059 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
74281081 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
74281104 TTCTTTT
1 TTCTTTT
74281111 TCAAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:74281125 original size:18 final size:18
Alignment explanation
Indices: 74281104--74281142 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
74281094 TTTCTTCAAC
* *
74281104 TTCTTTTTCAAATTTCTT
1 TTCTGTTTCAAATTCCTT
*
74281122 TTCTGTTTCACATTCCTT
1 TTCTGTTTCAAATTCCTT
74281140 TTC
1 TTC
74281143 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.03, T:0.62
Consensus pattern (18 bp):
TTCTGTTTCAAATTCCTT
Found at i:74285337 original size:38 final size:38
Alignment explanation
Indices: 74285294--74285424 Score: 118
Period size: 38 Copynumber: 3.2 Consensus size: 38
74285284 TTTCAAATTA
*
74285294 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACTGTGGCATATCCACTTAGCACCACGTT
* * * * *
74285332 ACATGTTTAACTTTGGTATATCCACTTAGCCCCACATTAAT
1 ACATGTATAACTGTGGCATATCCACTTAGCACCAC-GT--T
*
74285373 GAATCAATATATGTAACTGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACTGTGGCATATCCACTTAGCACCACGTT
74285417 ACATGTAT
1 ACATGTAT
74285425 CAATATGTGT
Statistics
Matches: 71, Mismatches: 13, Indels: 18
0.70 0.13 0.18
Matches are distributed among these distances:
38 31 0.44
39 1 0.01
40 4 0.06
41 2 0.03
42 1 0.01
43 1 0.01
44 2 0.03
45 3 0.04
46 1 0.01
47 25 0.35
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (38 bp):
ACATGTATAACTGTGGCATATCCACTTAGCACCACGTT
Found at i:74285448 original size:48 final size:47
Alignment explanation
Indices: 74285339--74285464 Score: 173
Period size: 48 Copynumber: 2.7 Consensus size: 47
74285329 GTTACATGTT
* * *
74285339 TAACTTTGGTATATCCACTTAGCCCCACATTAATGAATCAATATATG
1 TAACTGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
74285386 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACTGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
74285434 TAA-TCGTGGTATATCCACTTAGCACCACGTT
1 TAACT-GTGGTATATCCACTTAGCACCACGTT
74285465 TTTTTTCATT
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
47 29 0.41
48 41 0.59
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (47 bp):
TAACTGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:74288190 original size:15 final size:15
Alignment explanation
Indices: 74288167--74288208 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
74288157 GAAGCCCAGA
74288167 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
74288182 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
74288197 ATAAGGAAATCC
1 ATAAGGAAATCC
74288209 CATTTACAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:74289277 original size:25 final size:25
Alignment explanation
Indices: 74289241--74289288 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
74289231 TATATGTTAT
*
74289241 AAGTGTCTAATTGTCATGAAATTAG
1 AAGTGTCAAATTGTCATGAAATTAG
74289266 AAGTGTCAAATTGTCATGAAATT
1 AAGTGTCAAATTGTCATGAAATT
74289289 TTAAATAGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (25 bp):
AAGTGTCAAATTGTCATGAAATTAG
Found at i:74294715 original size:42 final size:42
Alignment explanation
Indices: 74294669--74294760 Score: 159
Period size: 42 Copynumber: 2.2 Consensus size: 42
74294659 TGGCCCTTAT
*
74294669 GCCCATTTCAATATCACATGTAATGTCAAT-AGTTGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGA-ATGTATGCAA
74294711 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
74294753 GCCCATTT
1 GCCCATTT
74294761 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
42 47 0.98
43 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:74295792 original size:27 final size:27
Alignment explanation
Indices: 74295762--74295826 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
74295752 GGGCATATTC
74295762 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
74295789 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
74295816 GTCTTTTTACC
1 GTCATTTTACC
74295827 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:74295910 original size:27 final size:27
Alignment explanation
Indices: 74295880--74296121 Score: 123
Period size: 27 Copynumber: 8.9 Consensus size: 27
74295870 GTAAATCTAC
*
74295880 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *
74295907 AAACCAATGGTATTTCTA-TGATTTTTT
1 AAACCAAGGGTATTTC-AGTAATTTTAT
* *
74295934 GAAAGTCAAGGGTATTTCTA-TAATTTTGT
1 -AAA-CCAAGGGTATTTC-AGTAATTTTAT
** * * ** *
74295963 AAATTAGGGGTGTTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
*** * *
74295990 AAATTGAGGGTATTTCAGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
74296017 AAACC-AGTGGTATTTCGGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTTAT
* * **
74296044 AAACTAGGGGTATTTTGGTAATTTTAT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* ** *
74296071 AAACTAAGGGTATTTTGGTAATTCTAT
1 AAACCAAGGGTATTTCAGTAATTTTAT
** *
74296098 CCTA-CATGGGTATTTCAGTAATTT
1 -AAACCAAGGGTATTTCAGTAATTT
74296122 CACAATCGAG
Statistics
Matches: 171, Mismatches: 37, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
26 2 0.01
27 140 0.82
28 9 0.05
29 20 0.12
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:74296055 original size:54 final size:54
Alignment explanation
Indices: 74295970--74296126 Score: 149
Period size: 54 Copynumber: 2.9 Consensus size: 54
74295960 TGTAAATTAG
* * * *
74295970 GGGTGTTTTGGTAATTTTACAAA-TTGAGGGTATTTCAGTAATTTCACAAAC-CA
1 GGGTATTTCGGTAATTTTACAAACTAG-GGGTATTTCAGTAATTTCACAAACTAA
** * *
74296023 GTGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACTAA
1 G-GGTATTTCGGTAATTTTACAAACTAGGGGTATTTCAGTAATTTCACAAACTAA
* * ** *
74296078 GGGTATTTTGGTAATTCTATCCTAC-ATGGGTATTTCAGTAATTTCACAA
1 GGGTATTTCGGTAATTTTA-CAAACTAGGGGTATTTCAGTAATTTCACAA
74296127 TCGAGGGTAA
Statistics
Matches: 83, Mismatches: 17, Indels: 7
0.78 0.16 0.07
Matches are distributed among these distances:
53 1 0.01
54 75 0.90
55 7 0.08
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (54 bp):
GGGTATTTCGGTAATTTTACAAACTAGGGGTATTTCAGTAATTTCACAAACTAA
Found at i:74296164 original size:27 final size:27
Alignment explanation
Indices: 74296125--74296322 Score: 218
Period size: 27 Copynumber: 7.3 Consensus size: 27
74296115 GTAATTTCAC
*
74296125 AATCGAGGGTAAAATGGTAATTTTTTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
74296152 AA-CTGTGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
** *
74296179 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* *
74296206 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* **
74296233 AATCAAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * * *
74296260 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * **
74296287 AATCAAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTTTGTA
74296314 AATCGAGGG
1 AATCGAGGG
74296323 CATTTCAGTA
Statistics
Matches: 145, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 143 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:74296243 original size:81 final size:81
Alignment explanation
Indices: 74296125--74296322 Score: 281
Period size: 81 Copynumber: 2.4 Consensus size: 81
74296115 GTAATTTCAC
* * * **
74296125 AATCGAGGGTAAAATGGTAATTTTTTAAA-CTGTGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACAGTAATTTTGTAAATCGAGGGT
*
74296189 AAAACAGTAATTCTGTA
65 AAAACAGTAATTCTATA
* *
74296206 AATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTA
*
74296271 AAACGGTAATTCTATA
66 AAACAGTAATTCTATA
* *
74296287 AATCAAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
74296323 CATTTCAGTA
Statistics
Matches: 104, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 103 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTA
AAACAGTAATTCTATA
Found at i:74296307 original size:54 final size:54
Alignment explanation
Indices: 74296158--74296322 Score: 240
Period size: 54 Copynumber: 3.1 Consensus size: 54
74296148 TTTAAACTGT
* * *
74296158 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCGA
*
74296212 GGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCGA
* * ** **
74296266 GGGTGAAACGGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTACAAATCGA
1 GGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCGA
74296320 GGG
1 GGG
74296323 CATTTCAGTA
Statistics
Matches: 100, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 100 1.00
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (54 bp):
GGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACAGTAATTCTGTAAATCGA
Found at i:74296332 original size:81 final size:81
Alignment explanation
Indices: 74296168--74296342 Score: 251
Period size: 81 Copynumber: 2.2 Consensus size: 81
74296158 GGGTAAAATG
* * *
74296168 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTACA
*
74296233 AATCAAGGGTAAAACA
66 AATCAAGGGCAAAACA
* *
74296249 GTAATTTTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTACA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTACA
* ***
74296314 AATCGAGGGCATTTCA
66 AATCAAGGGCAAAACA
*
74296330 GTAATTTGGTAAA
1 GTAATTTTGTAAA
74296343 CTAAAGTATT
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTACA
AATCAAGGGCAAAACA
Done.