Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 216 of 290
Found at i:74695039 original size:17 final size:17
Alignment explanation
Indices: 74695017--74695050 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
74695007 TCAATGATTT
*
74695017 ATCAAATAAATCCTAAA
1 ATCAAACAAATCCTAAA
74695034 ATCAAACAAATCCTAAA
1 ATCAAACAAATCCTAAA
74695051 TATATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.21, G:0.00, T:0.21
Consensus pattern (17 bp):
ATCAAACAAATCCTAAA
Found at i:74695492 original size:9 final size:9
Alignment explanation
Indices: 74695478--74695507 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
74695468 TAAATTTTAC
74695478 AATTTGAAT
1 AATTTGAAT
74695487 AATTTGAAT
1 AATTTGAAT
*
74695496 AATTCGAAT
1 AATTTGAAT
74695505 AAT
1 AAT
74695508 GGATTGGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (9 bp):
AATTTGAAT
Found at i:74695606 original size:9 final size:9
Alignment explanation
Indices: 74695592--74695624 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
74695582 GTTAAACGAA
74695592 TCGAGTTAT
1 TCGAGTTAT
*
74695601 TCGAGTTAA
1 TCGAGTTAT
74695610 TCGAGTTAT
1 TCGAGTTAT
74695619 TCGAGT
1 TCGAGT
74695625 CAACTCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:74695613 original size:18 final size:18
Alignment explanation
Indices: 74695590--74695624 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
74695580 GAGTTAAACG
74695590 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
74695608 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
74695625 CAACTCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:74696599 original size:5 final size:5
Alignment explanation
Indices: 74696589--74696614 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
74696579 GAACAAATAA
74696589 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
74696615 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:74697077 original size:18 final size:18
Alignment explanation
Indices: 74697044--74697108 Score: 53
Period size: 18 Copynumber: 3.5 Consensus size: 18
74697034 AAATTCATAT
74697044 TTTTAAAAAA-CATAATAA
1 TTTTAAAAAATC-TAATAA
74697062 TTTTAAAAAATCTAATGAA
1 TTTTAAAAAATCTAAT-AA
* *
74697081 TATATAAACAAATTTAA-AA
1 T-TTTAAA-AAATCTAATAA
*
74697100 GTTTAAAAA
1 TTTTAAAAA
74697109 TATTCTAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
17 2 0.05
18 19 0.49
19 6 0.15
20 5 0.13
21 7 0.18
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (18 bp):
TTTTAAAAAATCTAATAA
Found at i:74697218 original size:2 final size:2
Alignment explanation
Indices: 74697211--74697237 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
74697201 TGAAAAAGTT
74697211 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
74697238 GTTTTAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:74697671 original size:19 final size:19
Alignment explanation
Indices: 74697609--74697679 Score: 99
Period size: 20 Copynumber: 3.6 Consensus size: 19
74697599 TTACAAAAAA
74697609 AAAAATTCAAAATAATTTT
1 AAAAATTCAAAATAATTTT
74697628 CAAAAATTCAAAATAATTTT
1 -AAAAATTCAAAATAATTTT
*
74697648 TAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
74697667 AAAAATTCCAAAA
1 AAAAATT-CAAAA
74697680 CATATATGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
18 4 0.09
19 19 0.40
20 24 0.51
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:74697746 original size:8 final size:9
Alignment explanation
Indices: 74697693--74697745 Score: 65
Period size: 9 Copynumber: 5.8 Consensus size: 9
74697683 ATATGTTTTA
74697693 AAAAATTAT
1 AAAAATTAT
74697702 AAAAATTAT
1 AAAAATTAT
74697711 AAAAATATAT
1 AAAAAT-TAT
74697721 AAAGAAATT-T
1 -AA-AAATTAT
74697731 AAAAATT-T
1 AAAAATTAT
74697739 AAAAATT
1 AAAAATT
74697746 TTCTAAAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
8 13 0.32
9 17 0.41
10 4 0.10
11 3 0.07
12 4 0.10
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:74697963 original size:15 final size:15
Alignment explanation
Indices: 74697930--74697970 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
74697920 TTAATTTTTT
*
74697930 AATTTAACTCGA-AC
1 AATTTAACTCGATTC
*
74697944 AATTTCACTCGATTC
1 AATTTAACTCGATTC
74697959 AATTTAACTCGA
1 AATTTAACTCGA
74697971 CTTGAATTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.34
Consensus pattern (15 bp):
AATTTAACTCGATTC
Found at i:74707936 original size:267 final size:264
Alignment explanation
Indices: 74707454--74707985 Score: 992
Period size: 267 Copynumber: 2.0 Consensus size: 264
74707444 AATAATAACC
74707454 TAAATTGAATTTTTTTTCTCGAGGTCAATAGCAAACCAACTACAAAATTCATGGTCACTCATTCT
1 TAAATTGAATTTTTTTTCTCGAGGTCAATAGCAAACCAACTACAAAATTCATGGTCACTCATTCT
**
74707519 CATTTCCACTCAAGTATCGAAATGGGTTGCAACAATCTTAAGGGAACTTGATGCTCAAACTTTTA
66 CATTTCCACTCAAGTATCGAAATAAGTTGCAACAATCTTAAGGGAACTTGATGCTCAAACTTTTA
* *
74707584 CTTGTTGGCATACCAAACACTTGGCTATATATTCGGTGATGTCCTATTTTATTCTCGGCCACTAG
131 CTTGTTGGCATACCAAACACTTGGCTACATACTCGGTGATGTCCTATTTTATTCTCGGCCACTAG
74707649 TAAAATGGTTTCAAATCATTATACCTCTTGTTACTTCCCTAGTCGATAGCATAAGAACTATGGTG
196 TAAAATGGTTTCAAATCATTATACCTCTTGTTACTTCCCTAGTCGATAGCATAAGAACTATGGTG
74707714 AGCT
261 AGCT
*
74707718 TAAATTGAATTTTTTTTTCTCGAGGTTAATAGCAAACCAACTACAAAATTCATGGGGTCACTCAT
1 TAAATTGAA-TTTTTTTTCTCGAGGTCAATAGCAAACCAACTACAAAATTCAT--GGTCACTCAT
74707783 TCTCATTTCCACTCAAGTATCGAAATAAGTTGCAACAATCTTAAGGGAACTTGATGCTCAAACTT
63 TCTCATTTCCACTCAAGTATCGAAATAAGTTGCAACAATCTTAAGGGAACTTGATGCTCAAACTT
74707848 TTACTTGTTGGCATACCAAACACTTGGCTACATACTCGGTGATGTCCTATTTTATTCTCGGCCAC
128 TTACTTGTTGGCATACCAAACACTTGGCTACATACTCGGTGATGTCCTATTTTATTCTCGGCCAC
74707913 TAGTAAAATGGTTTCAAATCATTATACCTCTTGTTACTTCCCTAGTCGATAGCATAAGAACTATG
193 TAGTAAAATGGTTTCAAATCATTATACCTCTTGTTACTTCCCTAGTCGATAGCATAAGAACTATG
74707978 GTGAGCT
258 GTGAGCT
74707985 T
1 T
74707986 CTCAAAGACT
Statistics
Matches: 260, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
264 9 0.03
265 42 0.16
267 209 0.80
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.34
Consensus pattern (264 bp):
TAAATTGAATTTTTTTTCTCGAGGTCAATAGCAAACCAACTACAAAATTCATGGTCACTCATTCT
CATTTCCACTCAAGTATCGAAATAAGTTGCAACAATCTTAAGGGAACTTGATGCTCAAACTTTTA
CTTGTTGGCATACCAAACACTTGGCTACATACTCGGTGATGTCCTATTTTATTCTCGGCCACTAG
TAAAATGGTTTCAAATCATTATACCTCTTGTTACTTCCCTAGTCGATAGCATAAGAACTATGGTG
AGCT
Found at i:74714521 original size:8 final size:8
Alignment explanation
Indices: 74714488--74714521 Score: 50
Period size: 9 Copynumber: 4.0 Consensus size: 8
74714478 TAATTTTAAA
74714488 TTTAAATT
1 TTTAAATT
74714496 TTTAATATT
1 TTTAA-ATT
74714505 TTTATAATT
1 TTTA-AATT
74714514 TTTAAATT
1 TTTAAATT
74714522 ATTTTTTGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 9 0.38
9 14 0.58
10 1 0.04
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (8 bp):
TTTAAATT
Found at i:74718164 original size:23 final size:23
Alignment explanation
Indices: 74718136--74718215 Score: 70
Period size: 26 Copynumber: 3.2 Consensus size: 23
74718126 AATATACTTT
*
74718136 TATTTTATTAAATAAATCCATTA
1 TATTTTATTAAATGAATCCATTA
* *
74718159 TATTTTTACGCTAAACGAATCCATGTATA
1 TA-TTTTA--TTAAATGAATCCA--T-TA
*
74718188 TATTTTTTTAAATGAATCCATTA
1 TATTTTATTAAATGAATCCATTA
74718211 TATTT
1 TATTT
74718216 AATGGACTGT
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
23 9 0.20
24 6 0.13
26 21 0.47
28 5 0.11
29 4 0.09
ACGTcount: A:0.36, C:0.11, G:0.05, T:0.47
Consensus pattern (23 bp):
TATTTTATTAAATGAATCCATTA
Found at i:74718588 original size:22 final size:22
Alignment explanation
Indices: 74718541--74718590 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
74718531 AAAATTTTGT
74718541 TTATTTTTTGTTGTTTTAATGC
1 TTATTTTTTGTTGTTTTAATGC
*
74718563 -TATTTTCTTGTTGTTTT-CTGC
1 TTATTTT-TTGTTGTTTTAATGC
74718584 TTATTTT
1 TTATTTT
74718591 GCTACCATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 9 0.36
22 16 0.64
ACGTcount: A:0.10, C:0.08, G:0.12, T:0.70
Consensus pattern (22 bp):
TTATTTTTTGTTGTTTTAATGC
Found at i:74719889 original size:42 final size:41
Alignment explanation
Indices: 74719842--74719985 Score: 164
Period size: 42 Copynumber: 3.4 Consensus size: 41
74719832 GCACGCTTAA
* *
74719842 TGCATCATC-GAATAAACCGAAGTAATCATGCTAGCACATAAG
1 TGCATCATCAG-ATAAACCGAAGTAATTATACT-GCACATAAG
**
74719884 TGCATCATCAGATGTACCGAAGTAATTATACTGGCACATAAG
1 TGCATCATCAGATAAACCGAAGTAATTATACT-GCACATAAG
* **
74719926 TGCATCATCAGATAAGCCGAAACAATTATACTGACACATAAG
1 TGCATCATCAGATAAACCGAAGTAATTATACTG-CACATAAG
* *
74719968 TACATCATCAAATAAACC
1 TGCATCATCAGATAAACC
74719986 AAAACAAATA
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
41 1 0.01
42 85 0.98
43 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.23
Consensus pattern (41 bp):
TGCATCATCAGATAAACCGAAGTAATTATACTGCACATAAG
Found at i:74719991 original size:42 final size:42
Alignment explanation
Indices: 74719907--74719999 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
74719897 GTACCGAAGT
* * * * *
74719907 AATTATACTGGCACATAAGTGCATCATCAGATAAGCCGAAAC
1 AATTATACTGACACATAAGTACATCATCAAATAAACCAAAAC
74719949 AATTATACTGACACATAAGTACATCATCAAATAAACCAAAAC
1 AATTATACTGACACATAAGTACATCATCAAATAAACCAAAAC
*
74719991 AAATATACT
1 AATTATACT
74720000 AGCAGGTAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.47, C:0.20, G:0.10, T:0.23
Consensus pattern (42 bp):
AATTATACTGACACATAAGTACATCATCAAATAAACCAAAAC
Found at i:74723702 original size:50 final size:52
Alignment explanation
Indices: 74723648--74723756 Score: 152
Period size: 50 Copynumber: 2.1 Consensus size: 52
74723638 AATAAAGTAA
*
74723648 TGCATTATGTAACTCTCATGTTAG-TTAAGTATGCATCA-TAAA-TAATGACT
1 TGCATTATGTAACTCCCATGTTAGTTTAAGTATGCATCATTAAATTAA-GACT
* * *
74723698 TGCATTATGTAACTCCCATGTTAGTTTAAGTCTGCATTATTAAATTAAGTCT
1 TGCATTATGTAACTCCCATGTTAGTTTAAGTATGCATCATTAAATTAAGACT
74723750 TGCATTA
1 TGCATTA
74723757 AATAACTCAT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
50 23 0.44
51 12 0.23
52 14 0.27
53 3 0.06
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (52 bp):
TGCATTATGTAACTCCCATGTTAGTTTAAGTATGCATCATTAAATTAAGACT
Found at i:74723920 original size:9 final size:9
Alignment explanation
Indices: 74723903--74723976 Score: 54
Period size: 9 Copynumber: 8.7 Consensus size: 9
74723893 ATTTATTTAA
74723903 TTTAA-GTG
1 TTTAATGTG
74723911 TTTAATGTG
1 TTTAATGTG
*
74723920 TTT--TGTA
1 TTTAATGTG
74723927 TTTAATAAGTG
1 TTTAAT--GTG
74723938 TTTAAATGTG
1 TTT-AATGTG
*
74723948 TTTAATATG
1 TTTAATGTG
74723957 -TT--TGT-
1 TTTAATGTG
74723962 TTTAATGTG
1 TTTAATGTG
74723971 TTTAAT
1 TTTAAT
74723977 TGGAGGTGTC
Statistics
Matches: 52, Mismatches: 4, Indels: 19
0.69 0.05 0.25
Matches are distributed among these distances:
6 4 0.08
7 6 0.12
8 10 0.19
9 18 0.35
10 6 0.12
11 5 0.10
12 3 0.06
ACGTcount: A:0.26, C:0.00, G:0.18, T:0.57
Consensus pattern (9 bp):
TTTAATGTG
Found at i:74723935 original size:27 final size:29
Alignment explanation
Indices: 74723896--74723950 Score: 87
Period size: 27 Copynumber: 1.9 Consensus size: 29
74723886 TGAGTTCATT
74723896 TATTTAATTTAAGTGTTT-AATGTGTTTTG
1 TATTTAA-TTAAGTGTTTAAATGTGTTTTG
74723925 TATTTAA-TAAGTGTTTAAATGTGTTT
1 TATTTAATTAAGTGTTTAAATGTGTTT
74723951 AATATGTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 9 0.36
28 9 0.36
29 7 0.28
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.56
Consensus pattern (29 bp):
TATTTAATTAAGTGTTTAAATGTGTTTTG
Found at i:74737397 original size:342 final size:342
Alignment explanation
Indices: 74736772--74737455 Score: 1368
Period size: 342 Copynumber: 2.0 Consensus size: 342
74736762 ACTTACAGAC
74736772 CTGGTGTCGGGGATTCAGTGTGCCACCTCATCTGTTTTCTGACAAACTCAAAAGATTTAGGCCTT
1 CTGGTGTCGGGGATTCAGTGTGCCACCTCATCTGTTTTCTGACAAACTCAAAAGATTTAGGCCTT
74736837 TTTGAGATCCATTTCTCACACATTTGATTTAAAGAAAATAGGTTTGGAAATTATCTCTTTTCAAC
66 TTTGAGATCCATTTCTCACACATTTGATTTAAAGAAAATAGGTTTGGAAATTATCTCTTTTCAAC
74736902 AAAAAATTTGTTGTCAAAAATCAGATTTTTCAAAAATACCCTCTTTGGGCTCAATTTTTTAAAAA
131 AAAAAATTTGTTGTCAAAAATCAGATTTTTCAAAAATACCCTCTTTGGGCTCAATTTTTTAAAAA
74736967 CCTTTTTGGACCCGATCCACAGCCGAGTTGTTGCAACCGGGTTCTGATACCACTAAATGTAACAC
196 CCTTTTTGGACCCGATCCACAGCCGAGTTGTTGCAACCGGGTTCTGATACCACTAAATGTAACAC
74737032 CTCAAACCCAGCCCAGACGTTACGCCAGAATTCAGCGTGTCACATGGGGAATGTTACTAAAGAAG
261 CTCAAACCCAGCCCAGACGTTACGCCAGAATTCAGCGTGTCACATGGGGAATGTTACTAAAGAAG
74737097 TTATGTTTTATCCAAAA
326 TTATGTTTTATCCAAAA
74737114 CTGGTGTCGGGGATTCAGTGTGCCACCTCATCTGTTTTCTGACAAACTCAAAAGATTTAGGCCTT
1 CTGGTGTCGGGGATTCAGTGTGCCACCTCATCTGTTTTCTGACAAACTCAAAAGATTTAGGCCTT
74737179 TTTGAGATCCATTTCTCACACATTTGATTTAAAGAAAATAGGTTTGGAAATTATCTCTTTTCAAC
66 TTTGAGATCCATTTCTCACACATTTGATTTAAAGAAAATAGGTTTGGAAATTATCTCTTTTCAAC
74737244 AAAAAATTTGTTGTCAAAAATCAGATTTTTCAAAAATACCCTCTTTGGGCTCAATTTTTTAAAAA
131 AAAAAATTTGTTGTCAAAAATCAGATTTTTCAAAAATACCCTCTTTGGGCTCAATTTTTTAAAAA
74737309 CCTTTTTGGACCCGATCCACAGCCGAGTTGTTGCAACCGGGTTCTGATACCACTAAATGTAACAC
196 CCTTTTTGGACCCGATCCACAGCCGAGTTGTTGCAACCGGGTTCTGATACCACTAAATGTAACAC
74737374 CTCAAACCCAGCCCAGACGTTACGCCAGAATTCAGCGTGTCACATGGGGAATGTTACTAAAGAAG
261 CTCAAACCCAGCCCAGACGTTACGCCAGAATTCAGCGTGTCACATGGGGAATGTTACTAAAGAAG
74737439 TTATGTTTTATCCAAAA
326 TTATGTTTTATCCAAAA
74737456 ATCTTTCTTA
Statistics
Matches: 342, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
342 342 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (342 bp):
CTGGTGTCGGGGATTCAGTGTGCCACCTCATCTGTTTTCTGACAAACTCAAAAGATTTAGGCCTT
TTTGAGATCCATTTCTCACACATTTGATTTAAAGAAAATAGGTTTGGAAATTATCTCTTTTCAAC
AAAAAATTTGTTGTCAAAAATCAGATTTTTCAAAAATACCCTCTTTGGGCTCAATTTTTTAAAAA
CCTTTTTGGACCCGATCCACAGCCGAGTTGTTGCAACCGGGTTCTGATACCACTAAATGTAACAC
CTCAAACCCAGCCCAGACGTTACGCCAGAATTCAGCGTGTCACATGGGGAATGTTACTAAAGAAG
TTATGTTTTATCCAAAA
Found at i:74752395 original size:48 final size:48
Alignment explanation
Indices: 74752184--74752411 Score: 189
Period size: 48 Copynumber: 4.9 Consensus size: 48
74752174 GGTTATGCAC
* * *
74752184 GATCCCATGTAAGACCATGTCTGGGACATTGCTTTGGCATCGATATGT
1 GATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* ** * * * * *
74752232 AATATCGTGTAAGACCATAG-CTTGG-C-T---ATCGGCATCGATGTGT
1 GATCCCATATAAGACCAT-GTCTGGGACATGGCATTGGCATCGATATGT
* * ** **
74752275 GATCCCATATAAGACCATGTCTAGGACATGGCATTGGTATCGACCTAC
1 GATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * *
74752323 GATCCCATATAAGACCATGCCTGGGACATGACATTGACATCGATATGT
1 GATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * *
74752371 GATCCCATGTAAGACAATATCTGGGATATGGCATTGGCATC
1 GATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATC
74752412 CTACAATGTT
Statistics
Matches: 137, Mismatches: 36, Indels: 14
0.73 0.19 0.07
Matches are distributed among these distances:
42 1 0.01
43 30 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 101 0.74
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (48 bp):
GATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
Found at i:74771436 original size:6 final size:6
Alignment explanation
Indices: 74771406--74771672 Score: 149
Period size: 6 Copynumber: 43.3 Consensus size: 6
74771396 AAGAAACATT
* * *
74771406 ATCAGA A-CTAGA ATCAAA ATAAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * * *
74771455 ATTAGA ATTAGA ATCAGA ATTAG- GTGACAGA ATCAGA ATTAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A
* * *
74771506 A-CAGA ATCAGA ATCAAA ATCAGA ATTAG- GTGACAGA ATCAGA ATCA-A
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
*
74771553 TATCAGGA A-CAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA
1 -ATCA-GA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
74771603 ATCAGA ATCAGA ATTAGA ATCAG- GTGACAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A
* *
74771654 A-CAAA ATCAGA ATTAGA AT
1 ATCAGA ATCAGA ATCAGA AT
74771673 GTGAATGCAA
Statistics
Matches: 201, Mismatches: 33, Indels: 54
0.70 0.11 0.19
Matches are distributed among these distances:
5 15 0.07
6 157 0.78
7 21 0.10
8 8 0.04
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:74771461 original size:25 final size:25
Alignment explanation
Indices: 74771427--74771613 Score: 124
Period size: 25 Copynumber: 6.8 Consensus size: 25
74771417 AATCAAAATA
74771427 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* *
74771452 AGAATTAGAATTAGAATCAGAATTAGGTGAC
1 ------AGAATCAGAATCAGAATCAGGTGAC
* *
74771483 AGAATCAGAATTAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGT----G-A-C
* *
74771514 AGAATCAAAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
74771539 AGAATCAGAATCA-ATATCAGGAACAGAATC
1 AGAATCAGAATCAGA-ATCAGG---TG-A-C
* *
74771569 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTGAC
74771594 AGAATCAGAATCAGAATCAG
1 AGAATCAGAATCAGAATCAG
74771614 AATTAGAATC
Statistics
Matches: 126, Mismatches: 17, Indels: 32
0.72 0.10 0.18
Matches are distributed among these distances:
24 1 0.01
25 56 0.44
26 2 0.02
27 1 0.01
28 1 0.01
29 2 0.02
30 21 0.17
31 42 0.33
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:74771468 original size:31 final size:31
Alignment explanation
Indices: 74771427--74771672 Score: 218
Period size: 31 Copynumber: 8.4 Consensus size: 31
74771417 AATCAAAATA
* *
74771427 AGAATCAGAATCAGAATCAGGTGACAGAATT
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* *
74771458 AGAATTAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* *
74771483 AGAATCAGAATTAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* * *
74771514 AGAATCAAAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
74771545 AGAATC--AAT----ATCAGG-AACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
74771569 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* *
74771600 AGAATCAGAATCAGAATTA-G-AATCAG-GTGAC
1 AGAATCAGAATCAGAATCAGGTAA-CAGAAT--C
* *
74771631 AGAATCAGAATCAGTATCAGGTAACAAAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
74771662 AGAATTAGAAT
1 AGAATCAGAAT
74771673 GTGAATGCAA
Statistics
Matches: 174, Mismatches: 22, Indels: 38
0.74 0.09 0.16
Matches are distributed among these distances:
24 14 0.08
25 23 0.13
26 4 0.02
27 1 0.01
29 7 0.04
30 11 0.06
31 108 0.62
32 3 0.02
33 3 0.02
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:74771468 original size:37 final size:37
Alignment explanation
Indices: 74771415--74771650 Score: 183
Period size: 37 Copynumber: 6.5 Consensus size: 37
74771405 TATCAGAACT
* *
74771415 AGAATCAAAATAAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
* *
74771452 AGAAT-----T-AGAATTAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
* * *
74771483 AGAATCAGAATTAGTATCAGGTAA-CAGAATCA-G-AATC
1 AGAATCAGAATCAGAATCA-G-AATCAGAATCAGGTGA-C
* * * *
74771520 AAAATCAGAATTAG-GTGACAGAATCAGAATCA-AT-ATC
1 AGAATCAGAATCAGAAT--CAGAATCAGAATCAGGTGA-C
* *
74771557 AGGAA-CAGAATCAGAATCAGAATCAGTATCAGGTAAC
1 A-GAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
*
74771594 AGAATCAGAATCAGAATCAGAATTAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
*
74771631 AGAATCAGAATCAGTATCAG
1 AGAATCAGAATCAGAATCAG
74771651 GTAACAAAAT
Statistics
Matches: 163, Mismatches: 18, Indels: 36
0.75 0.08 0.17
Matches are distributed among these distances:
31 28 0.17
32 1 0.01
36 21 0.13
37 97 0.60
38 14 0.09
39 2 0.01
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:74771633 original size:25 final size:25
Alignment explanation
Indices: 74771605--74771672 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
74771595 GAATCAGAAT
*
74771605 CAGAATCAGAATTAGAATCAGGTGA
1 CAGAATCAGAATTAGAATCAGGTAA
* *
74771630 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATTAGAATCAGGTAA
*
74771655 CAAAATCAGAATTAGAAT
1 CAGAATCAGAATTAGAAT
74771673 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (25 bp):
CAGAATCAGAATTAGAATCAGGTAA
Found at i:74772070 original size:22 final size:22
Alignment explanation
Indices: 74772036--74772099 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
74772026 GCAAATACGT
* *
74772036 TTGGCACATAGCCATAATCAGG
1 TTGGCATAAAGCCATAATCAGG
* *
74772058 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCATAAAGCCATAAT-CAGG
74772080 TTGGC-TGAAAGCCATAATCA
1 TTGGCAT-AAAGCCATAATCA
74772100 AAATAATTAG
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (22 bp):
TTGGCATAAAGCCATAATCAGG
Found at i:74772520 original size:27 final size:27
Alignment explanation
Indices: 74772490--74773259 Score: 841
Period size: 27 Copynumber: 28.2 Consensus size: 27
74772480 GGCAAAATGG
* * * *
74772490 TAATTTTACCCCACAAGGATATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
74772517 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
*
74772543 GTAATTCTACCCTACAAGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
74772571 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
74772598 TATTTCTACCCTACAAGGGTATATAGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
74772625 TAATTCTACCCTATAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
*
74772651 GTAATTCTACCCTACAAGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
74772679 TAATTCTACCCTACATGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * * *
74772706 TAATTCTACTCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
74772733 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * * *
74772760 TAATTCTACTCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
74772787 TAATTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
74772814 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
74772841 TAATTCTACCTTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
74772868 TAATTCTACCTTACAAGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
74772895 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
74772922 TAATTTTACCCTGTTCTACCCTACAGGGGTATTTCGA
1 TAATTCTA-CC----CTA--C-A-AGGG-TATTTCGA
*
74772959 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
74772986 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
74773013 T-ATTCTACCCTACAAGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
* * * * *
74773038 GTAATTTTACCCTATAGGGGTATTTTGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
74773066 TAATTCTACCCTATAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
*
74773092 GTAATTCTATCCTACAAGGGTATTTC-A
1 -TAATTCTACCCTACAAGGGTATTTCGA
*
74773119 GTAATTCTACCCTACAGGGGTATTTCGA
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
74773147 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
74773174 TAATTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
74773201 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
74773228 TAATTCTACCCTATAAGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGA
74773255 TAATT
1 TAATT
74773260 TTGCAAATCG
Statistics
Matches: 655, Mismatches: 69, Indels: 38
0.86 0.09 0.05
Matches are distributed among these distances:
26 25 0.04
27 595 0.91
28 6 0.01
29 1 0.00
30 1 0.00
32 6 0.01
34 1 0.00
35 1 0.00
36 5 0.01
37 14 0.02
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:74772547 original size:54 final size:54
Alignment explanation
Indices: 74772488--74773252 Score: 1010
Period size: 54 Copynumber: 14.0 Consensus size: 54
74772478 AGGGCAAAAT
* * * * *
74772488 GGTAATTTTACCCCACAAGGATATCTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
74772542 AGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * *
74772596 GGTATTTCTACCCTACAAGGGTATATAGATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
74772650 AGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
74772704 GGTAATTCTACTCTATAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
74772758 GGTAATTCTACTCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* ** *
74772812 GGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
74772866 GGTAATTCTACCTTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
74772920 GGTAATTTTACCCTGTTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
1 GGT-A----A-----TTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
74772984 GATAATTCTACCCTACAGGGGTATTTCGGT-ATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * * *
74773037 AGTAATTTTACCCTATAGGGGTATTTTGGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
74773091 AGTAATTCTATCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
74773145 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
74773199 GGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
74773253 AATAATTTTG
Statistics
Matches: 630, Mismatches: 70, Indels: 22
0.87 0.10 0.03
Matches are distributed among these distances:
53 47 0.07
54 532 0.84
55 1 0.00
59 2 0.00
63 1 0.00
64 47 0.07
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:74772612 original size:81 final size:81
Alignment explanation
Indices: 74772488--74773252 Score: 996
Period size: 81 Copynumber: 9.3 Consensus size: 81
74772478 AGGGCAAAAT
* * * * * * *
74772488 GGTAATTTTACCCCACAAGGATATCTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
*
74772553 CCTACAAGGGTATTTC
66 CCTACAGGGGTATTTC
* *
74772569 GGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATAT-AGATAATTCTA
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTA
*
74772633 CCCTATAGGGGTATTTC
65 CCCTACAGGGGTATTTC
* * * *
74772650 AGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACATGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
* *
74772715 TCTATAGGGGTATTTC
66 CCTACAGGGGTATTTC
* * * * *
74772731 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACTCTATAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
*
74772796 CCTACAAGGGTATTTC
66 CCTACAGGGGTATTTC
** * * *
74772812 GGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCTTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
* * *
74772877 CTTACAAGGGTATTTT
66 CCTACAGGGGTATTTC
*
74772893 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACCCTGTTCTACCCTACAGGGGTATTTC-
1 GGTAATTCTACCCTACAGGGGTATTTCGGT-A----A-----TTCTACCCTACAAGGGTATTTCA
74772957 GATAATTCTACCCTACAGGGGTATTTC
56 G-TAATTCTACCCTACAGGGGTATTTC
* *
74772984 GATAATTCTACCCTACAGGGGTATTTCGGT-ATTCTACCCTACAAGGGTATTTCAGTAATTTTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
* *
74773048 CCTATAGGGGTATTTT
66 CCTACAGGGGTATTTC
* * *
74773064 GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTATCCTACAAGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
74773129 CCTACAGGGGTATTTC
66 CCTACAGGGGTATTTC
* * *
74773145 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
*
74773210 CCTACAAGGGTATTTC
66 CCTACAGGGGTATTTC
* *
74773226 GGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
74773253 AATAATTTTG
Statistics
Matches: 606, Mismatches: 63, Indels: 30
0.87 0.09 0.04
Matches are distributed among these distances:
80 72 0.12
81 457 0.75
82 2 0.00
85 1 0.00
86 1 0.00
90 1 0.00
91 72 0.12
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (81 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
CCTACAGGGGTATTTC
Found at i:74772939 original size:37 final size:37
Alignment explanation
Indices: 74772898--74772970 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
74772888 ATTTTGGTAA
* *
74772898 TTCTACCCTACAGGGGTATTTCGGTAATTTTACCCTG
1 TTCTACCCTACAGGGGTATTTCGATAATTCTACCCTG
74772935 TTCTACCCTACAGGGGTATTTCGATAATTCTACCCT
1 TTCTACCCTACAGGGGTATTTCGATAATTCTACCCT
74772971 ACAGGGGTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.37
Consensus pattern (37 bp):
TTCTACCCTACAGGGGTATTTCGATAATTCTACCCTG
Found at i:74773275 original size:27 final size:26
Alignment explanation
Indices: 74773244--74773530 Score: 171
Period size: 27 Copynumber: 10.7 Consensus size: 26
74773234 TACCCTATAA
*
74773244 GGGTATTTCAATAATTTTGCAAATCG
1 GGGTATTTCGATAATTTTGCAAATCG
* *
74773270 GAGGTATTTCGGTAAGTTTGCAAATCGG
1 G-GGTATTTCGATAATTTTGCAAATC-G
* *
74773298 GGGTATTTTGATAATTTTACAAATCAG
1 GGGTATTTCGATAATTTTGCAAATC-G
* * *
74773325 GGGTATTT-GGTAAATTTTACAAACTAG
1 GGGTATTTCGAT-AATTTTGCAAA-TCG
* * *
74773352 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTCGATAATTTTGCAAA-TCG
* * * *
74773379 GGGTATTTTGGTAATTTTACTAATCG
1 GGGTATTTCGATAATTTTGCAAATCG
* * * * *
74773405 AGGGTATTTTGGTAATTTTACTAATCAA
1 -GGGTATTTCGATAATTTTGCAAATC-G
* * * *
74773433 GGATATTTTGGTAATTTTGCTAATCG
1 GGGTATTTCGATAATTTTGCAAATCG
* * *
74773459 AGGGTATTTTGGTAATTTTGCTAATCG
1 -GGGTATTTCGATAATTTTGCAAATCG
* * *
74773486 AGGGTATTTTGGTAATTTTGCTAATCG
1 -GGGTATTTCGATAATTTTGCAAATCG
* * *
74773513 AGAGTATTTTGGTAATTT
1 -GGGTATTTCGATAATTT
74773531 GGTAAACTAA
Statistics
Matches: 233, Mismatches: 20, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
26 5 0.02
27 223 0.96
28 5 0.02
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.42
Consensus pattern (26 bp):
GGGTATTTCGATAATTTTGCAAATCG
Found at i:74773302 original size:54 final size:54
Alignment explanation
Indices: 74773243--74773530 Score: 300
Period size: 54 Copynumber: 5.3 Consensus size: 54
74773233 CTACCCTATA
** * * * *
74773243 AGGGTATTTCAATAATTTTGCAAATCGGAGGTATTTCGGTAAGTTTGCAAATCG
1 AGGGTATTTTGATAATTTTACAAATCGGAGGTATTTTGGTAATTTTGCTAATCG
* * * *
74773297 GGGGTATTTTGATAATTTTACAAATCAGG-GGTA-TTTGGTAAATTTTAC-AAACT
1 AGGGTATTTTGATAATTTTACAAATC-GGAGGTATTTTGGT-AATTTTGCTAATCG
* *
74773350 AGGGGTATTTTGATAATTTTACAAACTAGG-GGTATTTTGGTAATTTTACTAATCG
1 A-GGGTATTTTGATAATTTTACAAA-TCGGAGGTATTTTGGTAATTTTGCTAATCG
* * *
74773405 AGGGTATTTTGGTAATTTTACTAATC-AAGGATATTTTGGTAATTTTGCTAATCG
1 AGGGTATTTTGATAATTTTACAAATCGGAGG-TATTTTGGTAATTTTGCTAATCG
* * *
74773459 AGGGTATTTTGGTAATTTTGCTAATC-GAGGGTATTTTGGTAATTTTGCTAATCG
1 AGGGTATTTTGATAATTTTACAAATCGGA-GGTATTTTGGTAATTTTGCTAATCG
* *
74773513 AGAGTATTTTGGTAATTT
1 AGGGTATTTTGATAATTT
74773531 GGTAAACTAA
Statistics
Matches: 204, Mismatches: 21, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
53 11 0.05
54 178 0.87
55 15 0.07
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.42
Consensus pattern (54 bp):
AGGGTATTTTGATAATTTTACAAATCGGAGGTATTTTGGTAATTTTGCTAATCG
Found at i:74773329 original size:81 final size:80
Alignment explanation
Indices: 74773255--74773530 Score: 315
Period size: 81 Copynumber: 3.4 Consensus size: 80
74773245 GGTATTTCAA
* * * * *
74773255 TAATTTTGCAAATCGGAGGTATTTCGGTAAGTTTGCAAATCGGGGGTATTTTGATAATTTTACAA
1 TAATTTTACAAATC-GAGGTATTTTGGTAATTTTGCAAATCGGGGGTATTTTGGTAATTTTACTA
74773320 ATC-AGGGGTA-TTTGG
65 ATCGA-GGGTATTTTGG
* * * * *
74773335 TAAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTAC
1 T-AATTTTACAAA-TCGAGGTATTTTGGTAATTTTGCAAATC-GGGGGTATTTTGGTAATTTTAC
74773399 TAATCGAGGGTATTTTGG
63 TAATCGAGGGTATTTTGG
* * * * *
74773417 TAATTTTACTAATCAAGGATATTTTGGTAATTTTGCTAATCGAGGGTATTTTGGTAATTTTGCTA
1 TAATTTTACAAATCGAGG-TATTTTGGTAATTTTGCAAATCGGGGGTATTTTGGTAATTTTACTA
74773482 ATCGAGGGTATTTTGG
65 ATCGAGGGTATTTTGG
* *
74773498 TAATTTTGCTAATCGAGAGTATTTTGGTAATTT
1 TAATTTTACAAATCGAG-GTATTTTGGTAATTT
74773531 GGTAAACTAA
Statistics
Matches: 166, Mismatches: 22, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
80 5 0.03
81 151 0.91
82 10 0.06
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (80 bp):
TAATTTTACAAATCGAGGTATTTTGGTAATTTTGCAAATCGGGGGTATTTTGGTAATTTTACTAA
TCGAGGGTATTTTGG
Found at i:74780203 original size:18 final size:18
Alignment explanation
Indices: 74780170--74780204 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
74780160 TACTAAGTGC
*
74780170 AGGCTACTATGCGTATCA
1 AGGCTACTACGCGTATCA
*
74780188 AGGCTACTACGTGTATC
1 AGGCTACTACGCGTATC
74780205 GGATTGTTGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (18 bp):
AGGCTACTACGCGTATCA
Found at i:74780231 original size:67 final size:67
Alignment explanation
Indices: 74780121--74780246 Score: 243
Period size: 67 Copynumber: 1.9 Consensus size: 67
74780111 TACTAAGTGC
*
74780121 AGGCTACTACGTGTATCGGATTGTTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTAT
1 AGGCTACTACGTGTATCGGATTGTTGGTCGCATGTGTACTACTAAGTGCAGGCTACTATGCGTAT
74780186 CA
66 CA
74780188 AGGCTACTACGTGTATCGGATTGTTGGTCGCATGTGTACTACTAAGTGCAGGCTACTAT
1 AGGCTACTACGTGTATCGGATTGTTGGTCGCATGTGTACTACTAAGTGCAGGCTACTAT
74780247 ACTATCAGAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 58 1.00
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (67 bp):
AGGCTACTACGTGTATCGGATTGTTGGTCGCATGTGTACTACTAAGTGCAGGCTACTATGCGTAT
CA
Found at i:74780374 original size:27 final size:26
Alignment explanation
Indices: 74780344--74780395 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
74780334 GGGAAAATCG
74780344 ATAAAGTGGTAGTATGTG-AAAGTTATT
1 ATAAAGTGG-A-TATGTGCAAAGTTATT
* *
74780371 ATAAGGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAAGTTAT
74780396 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 6 0.27
26 8 0.36
27 8 0.36
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.37
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAAGTTATT
Found at i:74782370 original size:23 final size:23
Alignment explanation
Indices: 74782318--74782411 Score: 109
Period size: 23 Copynumber: 3.9 Consensus size: 23
74782308 TACTGATATA
*
74782318 TCAGCTCGAA-AGAGCTTACTGTTT
1 TCAGCTC-AATAGAGCTTACCG-TT
74782342 TCAGCTCAATAGAGCTTACCGTT
1 TCAGCTCAATAGAGCTTACCGTT
*
74782365 TCAGCTCAATAGAGCTTACTGTT
1 TCAGCTCAATAGAGCTTACCGTT
*
74782388 TAGCAGCTCAAGAGGAGCTTACCG
1 T--CAGCTCAATA-GAGCTTACCG
74782412 ATCATGGATC
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
23 27 0.44
24 17 0.27
25 9 0.15
26 9 0.15
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (23 bp):
TCAGCTCAATAGAGCTTACCGTT
Found at i:74782379 original size:47 final size:49
Alignment explanation
Indices: 74782318--74782411 Score: 140
Period size: 47 Copynumber: 2.0 Consensus size: 49
74782308 TACTGATATA
* *
74782318 TCAGCTCGAAAGAGCTTACTGTTT-TCAGCTCAATA-GAGCTTACCGTT
1 TCAGCTCGAAAGAGCTTACTGTTTAGCAGCTCAAGAGGAGCTTACCGTT
74782365 TCAGCTC-AATAGAGCTTACTGTTTAGCAGCTCAAGAGGAGCTTACCG
1 TCAGCTCGAA-AGAGCTTACTGTTTAGCAGCTCAAGAGGAGCTTACCG
74782412 ATCATGGATC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
46 2 0.05
47 21 0.50
48 9 0.21
49 10 0.24
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (49 bp):
TCAGCTCGAAAGAGCTTACTGTTTAGCAGCTCAAGAGGAGCTTACCGTT
Found at i:74784441 original size:24 final size:24
Alignment explanation
Indices: 74784414--74784462 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
74784404 ACTGTTTTCT
**
74784414 ATTTATTTGAATGATGGATAAATA
1 ATTTATTTGAATGATAAATAAATA
74784438 ATTTATTTGAATGATAAATAAATA
1 ATTTATTTGAATGATAAATAAATA
74784462 A
1 A
74784463 CTAAAGTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (24 bp):
ATTTATTTGAATGATAAATAAATA
Found at i:74786249 original size:62 final size:62
Alignment explanation
Indices: 74786180--74786332 Score: 261
Period size: 62 Copynumber: 2.5 Consensus size: 62
74786170 AATGATTATC
*
74786180 TTAATATTAAATTTAATTTAATTTTTATCTTGTATATAAATATTCTGTTATTTTAATAAGAT
1 TTAATATTAAATTTAATTTAATTTTTATCTTGTATATAAATATTCTATTATTTTAATAAGAT
* * *
74786242 TTAATATTAAATTTAATTTTATGTTTACCTTGTATATAAATATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATTTAATTTTTATCTTGTATATAAATATTCTATTATTTTAATAAGAT
*
74786304 TTAATATTAAATTTAATATAATTTTTATC
1 TTAATATTAAATTTAATTTAATTTTTATC
74786333 AAGATAAATA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 83 1.00
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (62 bp):
TTAATATTAAATTTAATTTAATTTTTATCTTGTATATAAATATTCTATTATTTTAATAAGAT
Found at i:74786328 original size:33 final size:34
Alignment explanation
Indices: 74786227--74786362 Score: 90
Period size: 33 Copynumber: 4.1 Consensus size: 34
74786217 AAATATTCTG
*
74786227 TTATTTTAATAAGATT-TAATATTAAATTTAATT
1 TTATTTTAATAAGATTATAATATTAAATTTAATA
* ** * *
74786260 TTATGTT--T-ACCTTGT-ATA-TAAATATT-CTA
1 TTATTTTAATAAGATTATAATATTAAAT-TTAATA
74786289 TTATTTTAATAAGATT-TAATATTAAATTTAATA
1 TTATTTTAATAAGATTATAATATTAAATTTAATA
* * *
74786322 TAATTTTTATCAAGATAAATATTATATTAAATTTAATA
1 TTATTTTAAT-AAGAT---TATAATATTAAATTTAATA
74786360 TTA
1 TTA
74786363 AAGTGATTAA
Statistics
Matches: 77, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
29 12 0.16
30 8 0.10
31 4 0.05
32 8 0.10
33 21 0.27
34 5 0.06
37 1 0.01
38 18 0.23
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (34 bp):
TTATTTTAATAAGATTATAATATTAAATTTAATA
Found at i:74794691 original size:49 final size:49
Alignment explanation
Indices: 74794619--74794731 Score: 208
Period size: 49 Copynumber: 2.3 Consensus size: 49
74794609 TTATATAGTA
74794619 GTCTGGGACATGGCATCGGCCTCGATGGAGATAGCCAGCATAAGACCAT
1 GTCTGGGACATGGCATCGGCCTCGATGGAGATAGCCAGCATAAGACCAT
*
74794668 GTCTGGGACATGGCATCGGCCTCGATGGAGATAGCCAGCGTAAGACCAT
1 GTCTGGGACATGGCATCGGCCTCGATGGAGATAGCCAGCATAAGACCAT
*
74794717 GTCTGGGATATGGCA
1 GTCTGGGACATGGCA
74794732 GCGGAAACTT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 62 1.00
ACGTcount: A:0.25, C:0.23, G:0.33, T:0.19
Consensus pattern (49 bp):
GTCTGGGACATGGCATCGGCCTCGATGGAGATAGCCAGCATAAGACCAT
Found at i:74808569 original size:27 final size:27
Alignment explanation
Indices: 74808539--74808590 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
74808529 CCCATACTGA
*
74808539 TAAAATGACTGTTATACCCCTATGAGG
1 TAAAATGACTGATATACCCCTATGAGG
*
74808566 TAAAATGATTGATATACCCCTATGA
1 TAAAATGACTGATATACCCCTATGA
74808591 TATGTATGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (27 bp):
TAAAATGACTGATATACCCCTATGAGG
Found at i:74811498 original size:22 final size:23
Alignment explanation
Indices: 74811473--74811517 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
74811463 TAGAAAAGTG
74811473 TAGAGAAAAACT-AA-ATAAAACT
1 TAGAG-AAAACTAAACATAAAACT
74811495 TAGAGAAAACTAAACATAAAACT
1 TAGAGAAAACTAAACATAAAACT
74811518 AAGCTAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.29
22 7 0.33
23 8 0.38
ACGTcount: A:0.62, C:0.11, G:0.09, T:0.18
Consensus pattern (23 bp):
TAGAGAAAACTAAACATAAAACT
Found at i:74813022 original size:13 final size:13
Alignment explanation
Indices: 74813006--74813039 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74812996 AATTTTTATG
74813006 ATTGGGTTGGATA
1 ATTGGGTTGGATA
*
74813019 ATTGGGTTGGGTA
1 ATTGGGTTGGATA
*
74813032 CTTGGGTT
1 ATTGGGTT
74813040 TATATATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.15, C:0.03, G:0.41, T:0.41
Consensus pattern (13 bp):
ATTGGGTTGGATA
Found at i:74815861 original size:48 final size:48
Alignment explanation
Indices: 74815802--74815903 Score: 159
Period size: 48 Copynumber: 2.1 Consensus size: 48
74815792 CTAGGCTATC
* * *
74815802 GGCATCGATATGTGATCCCATGTAAGACCATGTATGGGACATGGCATT
1 GGCATCAATATGCGATCCCATGTAAGACCATATATGGGACATGGCATT
* *
74815850 GGCATCAATATGCGATCCCATGTAAGACCATATCTGGGATATGGCATT
1 GGCATCAATATGCGATCCCATGTAAGACCATATATGGGACATGGCATT
74815898 GGCATC
1 GGCATC
74815904 CTACCATGTG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (48 bp):
GGCATCAATATGCGATCCCATGTAAGACCATATATGGGACATGGCATT
Found at i:74816613 original size:31 final size:31
Alignment explanation
Indices: 74816577--74816639 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
74816567 TCATTTGGCA
* *
74816577 TGGATGAATTGTGGATATGATTATGGATGTT
1 TGGATGAATTGTGGATATAATCATGGATGTT
74816608 TGGATGAATTGTGGATATAATCATGGATGTT
1 TGGATGAATTGTGGATATAATCATGGATGTT
74816639 T
1 T
74816640 TATGATGGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.27, C:0.02, G:0.30, T:0.41
Consensus pattern (31 bp):
TGGATGAATTGTGGATATAATCATGGATGTT
Found at i:74820906 original size:15 final size:15
Alignment explanation
Indices: 74820886--74820914 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
74820876 TGTGGTTCCA
74820886 ATTTCTTGTTGATCG
1 ATTTCTTGTTGATCG
74820901 ATTTCTTGTTGATC
1 ATTTCTTGTTGATC
74820915 AGCAACTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.17, T:0.55
Consensus pattern (15 bp):
ATTTCTTGTTGATCG
Found at i:74821986 original size:11 final size:10
Alignment explanation
Indices: 74821954--74822028 Score: 84
Period size: 11 Copynumber: 7.5 Consensus size: 10
74821944 CATGAGATTT
74821954 TGATAT-ACA
1 TGATATGACA
*
74821963 TGATTTGACA
1 TGATATGACA
74821973 TGATATGCACA
1 TGATATG-ACA
74821984 TGATATG-CA
1 TGATATGACA
74821993 TGATATGTACA
1 TGATATG-ACA
*
74822004 TGATATG-TA
1 TGATATGACA
74822013 TGATATGCACA
1 TGATATG-ACA
74822024 TGATA
1 TGATA
74822029 AACTCATATA
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
9 22 0.39
10 9 0.16
11 25 0.45
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:74821996 original size:9 final size:9
Alignment explanation
Indices: 74821954--74822021 Score: 64
Period size: 9 Copynumber: 7.0 Consensus size: 9
74821944 CATGAGATTT
*
74821954 TGATATACA
1 TGATATGCA
*
74821963 TGATTTGACA
1 TGATATG-CA
74821973 TGATATGCACA
1 TGATATG--CA
74821984 TGATATGCA
1 TGATATGCA
74821993 TGATATGTACA
1 TGATATG--CA
*
74822004 TGATATGTA
1 TGATATGCA
74822013 TGATATGCA
1 TGATATGCA
74822022 CATGATAAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
9 23 0.46
10 8 0.16
11 19 0.38
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (9 bp):
TGATATGCA
Found at i:74821996 original size:20 final size:20
Alignment explanation
Indices: 74821960--74822028 Score: 102
Period size: 20 Copynumber: 3.4 Consensus size: 20
74821950 ATTTTGATAT
*
74821960 ACATGATTTGACATGATATGC
1 ACATGATATG-CATGATATGC
*
74821981 ACATGATATGCATGATATGT
1 ACATGATATGCATGATATGC
*
74822001 ACATGATATGTATGATATGC
1 ACATGATATGCATGATATGC
74822021 ACATGATA
1 ACATGATA
74822029 AACTCATATA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
20 35 0.80
21 9 0.20
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:74822173 original size:25 final size:25
Alignment explanation
Indices: 74822076--74822160 Score: 143
Period size: 25 Copynumber: 3.4 Consensus size: 25
74822066 GAGGAAGTGC
* *
74822076 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
74822101 AAAATGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
74822126 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
74822151 AAAAGGGCTT
1 AAAAGGGCTT
74822161 GTCCTCCAGT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:74831394 original size:11 final size:10
Alignment explanation
Indices: 74831362--74831436 Score: 75
Period size: 11 Copynumber: 7.5 Consensus size: 10
74831352 CATGAGATTT
74831362 TGATAT-ACA
1 TGATATGACA
*
74831371 TGATTTGACA
1 TGATATGACA
74831381 TGATATGCACA
1 TGATATG-ACA
*
74831392 TGATATG-TA
1 TGATATGACA
74831401 TGATATGTACA
1 TGATATG-ACA
*
74831412 TGATATG-TA
1 TGATATGACA
74831421 TGATATGCACA
1 TGATATG-ACA
74831432 TGATA
1 TGATA
74831437 AACTCATATA
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
9 21 0.39
10 9 0.17
11 24 0.44
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (10 bp):
TGATATGACA
Found at i:74831405 original size:9 final size:9
Alignment explanation
Indices: 74831391--74831427 Score: 56
Period size: 9 Copynumber: 3.9 Consensus size: 9
74831381 TGATATGCAC
74831391 ATGATATGT
1 ATGATATGT
74831400 ATGATATGT
1 ATGATATGT
74831409 ACATGATATGT
1 --ATGATATGT
74831420 ATGATATG
1 ATGATATG
74831428 CACATGATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 17 0.65
11 9 0.35
ACGTcount: A:0.35, C:0.03, G:0.22, T:0.41
Consensus pattern (9 bp):
ATGATATGT
Found at i:74831405 original size:20 final size:20
Alignment explanation
Indices: 74831380--74831436 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
74831370 ATGATTTGAC
74831380 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
*
74831400 ATGATATGTACATGATATGT
1 ATGATATGCACATGATATGT
74831420 ATGATATGCACATGATA
1 ATGATATGCACATGATA
74831437 AACTCATATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:74831581 original size:25 final size:25
Alignment explanation
Indices: 74831484--74831568 Score: 134
Period size: 25 Copynumber: 3.4 Consensus size: 25
74831474 GAGGAAGTGC
* * *
74831484 AAAAGGGCTTTGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
74831509 AAAATGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
74831534 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
74831559 AAAAGGGCTT
1 AAAAGGGCTT
74831569 GTCCTCCAGT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:74831845 original size:31 final size:31
Alignment explanation
Indices: 74831774--74831848 Score: 98
Period size: 31 Copynumber: 2.4 Consensus size: 31
74831764 CGTTTACAGT
*
74831774 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
74831805 AAAGGCTTCGGCCCAGTGGTTTGA-TTAGTGA
1 AAAGGCTTCGGCCCAGTGATATGATTTA-TGA
*
74831836 AAATGCTTCGGCC
1 AAAGGCTTCGGCC
74831849 AAGTAACCGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 3 0.08
31 36 0.92
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:74834169 original size:27 final size:27
Alignment explanation
Indices: 74834138--74834239 Score: 141
Period size: 27 Copynumber: 3.8 Consensus size: 27
74834128 CCCCAAAATA
* *
74834138 GGTAAAATAACCATAATGCCCCTATAG
1 GGTAAAATGACCATAATGCCCCTGTAG
*
74834165 GGTAAAATGACCATAATGCCCTTGTAG
1 GGTAAAATGACCATAATGCCCCTGTAG
* *
74834192 GGTAAAATGACCATAATGCCTCTGTAT
1 GGTAAAATGACCATAATGCCCCTGTAG
* *
74834219 GGTAAAATGACGATTATGCCC
1 GGTAAAATGACCATAATGCCC
74834240 TTATGTTTAG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCATAATGCCCCTGTAG
Found at i:74834422 original size:27 final size:26
Alignment explanation
Indices: 74834365--74834456 Score: 71
Period size: 27 Copynumber: 3.5 Consensus size: 26
74834355 ATGGAGGAAG
* * * *
74834365 TACTGTACTGGTGACTATGTCAC-AT
1 TACTGTTCTGGTGGCTTTGCCACAAT
74834390 TCACTGTTGCTGGTGG-TTATGCCACAAT
1 T-ACTGTT-CTGGTGGCTT-TGCCACAAT
* * *
74834418 TACTGATACTAGTGGCTTTGCCACACT
1 TACTG-TTCTGGTGGCTTTGCCACAAT
74834445 TACTGTTCTGGT
1 TACTGTTCTGGT
74834457 AGCTATGTTG
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
25 1 0.02
26 11 0.21
27 34 0.65
28 6 0.12
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
TACTGTTCTGGTGGCTTTGCCACAAT
Found at i:74834624 original size:27 final size:26
Alignment explanation
Indices: 74834587--74834637 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
74834577 ATTACACTGT
* *
74834587 ACTATACTGTATTGGGCTTAGGCCAC
1 ACTATACTGTATAGGGCTAAGGCCAC
74834613 ACTATTACTGTATAGGGCTAAGGCC
1 ACTA-TACTGTATAGGGCTAAGGCC
74834638 CAAACTGTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (26 bp):
ACTATACTGTATAGGGCTAAGGCCAC
Found at i:74834656 original size:33 final size:33
Alignment explanation
Indices: 74834618--74834712 Score: 129
Period size: 33 Copynumber: 2.9 Consensus size: 33
74834608 GCCACACTAT
74834618 TACTGTATAGGGCTAAGGCCCAAACTGTGCTGA
1 TACTGTATAGGGCTAAGGCCCAAACTGTGCTGA
* *
74834651 TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
1 TACTGTATAGGGCTAAGGCCCAAACTGTGCTGA
** *
74834684 TACTAAATAGGGCTCAA-GCCCAAATTGTG
1 TACTGTATAGGGCT-AAGGCCCAAACTGTG
74834713 TTATTCACTG
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
33 52 0.96
34 2 0.04
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.24
Consensus pattern (33 bp):
TACTGTATAGGGCTAAGGCCCAAACTGTGCTGA
Found at i:74841313 original size:40 final size:39
Alignment explanation
Indices: 74841215--74841477 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
74841205 TCCTCGTTCA
* * * *
74841215 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
74841254 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
74841293 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
74841333 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
74841373 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
74841413 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
74841454 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
74841478 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:74841437 original size:120 final size:119
Alignment explanation
Indices: 74841215--74841477 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
74841205 TCCTCGTTCA
* * *
74841215 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
74841280 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
74841333 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
74841398 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
74841454 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
74841478 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:74841486 original size:41 final size:41
Alignment explanation
Indices: 74841409--74841486 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
74841399 TTTGTATCTC
* * *
74841409 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
74841450 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
74841487 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:74849263 original size:40 final size:39
Alignment explanation
Indices: 74849161--74849343 Score: 188
Period size: 40 Copynumber: 4.6 Consensus size: 39
74849151 TCCTCGTTCA
* * * *
74849161 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCAC
* **
74849200 AATGCCTTCGGGACATAATCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCAC
* *
74849239 GAATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCAC
* * * * *
74849279 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAATAAC-TCGCAC
*
74849320 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
74849344 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
39 37 0.30
40 77 0.63
41 8 0.07
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCAC
Found at i:74849352 original size:41 final size:41
Alignment explanation
Indices: 74849275--74849352 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
74849265 TTAATAACTC
* * *
74849275 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
74849316 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
74849353 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:74851066 original size:48 final size:48
Alignment explanation
Indices: 74851010--74851141 Score: 210
Period size: 48 Copynumber: 2.8 Consensus size: 48
74851000 ACGATGGCTC
*
74851010 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * *
74851058 ATGCCGATGTCATGTCTCAGACATGGTCTTACACTGGCTCACGTAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* *
74851106 ATACCGATGCCATGTCCTAGACATGGTCTTACACTG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTG
74851142 TTACACATAT
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
Found at i:74853530 original size:16 final size:17
Alignment explanation
Indices: 74853511--74853548 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
74853501 CTATTTAACC
* *
74853511 ATTTGTTTATTTTA-TT
1 ATTTATTTATATTAGTT
74853527 ATTTATTTATATTAGTT
1 ATTTATTTATATTAGTT
74853544 ATTTA
1 ATTTA
74853549 CTTTCTAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (17 bp):
ATTTATTTATATTAGTT
Found at i:74855375 original size:50 final size:50
Alignment explanation
Indices: 74855211--74855600 Score: 408
Period size: 50 Copynumber: 7.8 Consensus size: 50
74855201 ATGATCTATT
* *
74855211 GTGTGTAGTACTTAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCAC
* * * * ** * * * *
74855261 ATGTATAGTACTATGTGCAGGCTACTATGCATACCCG-TTAACTTCA-ATCAT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--T-AGGTCAC
*
74855312 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCAC
*
74855362 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCAC
* * * * * * * * *
74855412 GTGTGTAGTACTAAGTGCATGCTACTATGCGTGCCTG-TTAACTTCGATCAT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCAC
* * * * * *
74855463 GTGTGTAGTACTAAGTGCAGGATACTACGTGTATCAGATGGTTAAGTCAT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCAC
* *
74855513 GTGTGTAGTACTAAGTGCAGGCCACTATGTGTACCAGATTGATAGGTCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCAC
* * *
74855563 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
74855601 GAGCTTCGAT
Statistics
Matches: 275, Mismatches: 57, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
49 7 0.03
50 195 0.71
51 68 0.25
52 5 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCAC
Found at i:74855385 original size:101 final size:98
Alignment explanation
Indices: 74855210--74855599 Score: 397
Period size: 101 Copynumber: 3.9 Consensus size: 98
74855200 AATGATCTAT
* * * *
74855210 TGTGTGTAGTACTTAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTATAGTACTAT
1 TGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAA
* * *
74855275 GTGCAGGCTACTATGCATACCCGTTAACTTCAATCA
66 GTGCAGGCTACTACGCGTACCAGTT-A-TT-AATCA
* *
74855311 TGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCGTGTGTAGTACTAA
1 TGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAA
* * *
74855376 GTGCAGGCTACTACGTGTACCAGATTGA-TAGGTCG
66 GTGCAGGCTACTACGCGTACCAG-TT-ATTA-ATCA
* * * * * * * * * **
74855411 CGTGTGTAGTACTAAGTGCATGCTACTATGCGTGCCTG-TTAACTTCGATCATGTGTGTAGTACT
1 TGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCACATGTGTAGTACT
* * * **
74855475 AAGTGCAGGATACTACGTGTATCAGATGGTTAAGTCA
64 AAGTGCAGGCTACTACGCGTACCAG-TTATTAA-TCA
* *
74855512 TGTGTGTAGTACTAAGTGCAGGCCACTATGTGTACCAGATTGATAGGTCACATGTGTAGTACTAA
1 TGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAA
*
74855577 GTGCAGGCTACTATGCGTACCAG
66 GTGCAGGCTACTACGCGTACCAG
74855600 AGAGCTTCGA
Statistics
Matches: 237, Mismatches: 45, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
99 4 0.02
100 72 0.30
101 155 0.65
102 6 0.03
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (98 bp):
TGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAA
GTGCAGGCTACTACGCGTACCAGTTATTAATCA
Found at i:74855489 original size:151 final size:151
Alignment explanation
Indices: 74855211--74855597 Score: 594
Period size: 151 Copynumber: 2.6 Consensus size: 151
74855201 ATGATCTATT
* * * *
74855211 GTGTGTAGTACTTAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTATAGTACTATG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAG
* *
74855276 TGCAGGCTACTATGCATACCCGTTAACTTCAATCATGTGTGTAGTACTAAGTGCAGGCTACTACG
66 TGCAGGCTACTATGCGTACCCGTTAACTTCAATCATGTGTGTAGTACTAAGTGCAGGATACTACG
* * *
74855341 TGTACCAGATTGATAGGTCGC
131 TGTACCAGATGGATAAGTCAC
* *
74855362 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAG
* * * *
74855427 TGCATGCTACTATGCGTGCCTGTTAACTTCGATCATGTGTGTAGTACTAAGTGCAGGATACTACG
66 TGCAGGCTACTATGCGTACCCGTTAACTTCAATCATGTGTGTAGTACTAAGTGCAGGATACTACG
* * *
74855492 TGTATCAGATGGTTAAGTCAT
131 TGTACCAGATGGATAAGTCAC
* *
74855513 GTGTGTAGTACTAAGTGCAGGCCACTATGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAG
74855578 TGCAGGCTACTATGCGTACC
66 TGCAGGCTACTATGCGTACC
74855598 AGAGAGCTTC
Statistics
Matches: 212, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
151 212 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (151 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAG
TGCAGGCTACTATGCGTACCCGTTAACTTCAATCATGTGTGTAGTACTAAGTGCAGGATACTACG
TGTACCAGATGGATAAGTCAC
Found at i:74855821 original size:16 final size:16
Alignment explanation
Indices: 74855800--74855831 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
74855790 AGAATGCAGT
74855800 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
74855816 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
74855832 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:74859095 original size:15 final size:15
Alignment explanation
Indices: 74859058--74859096 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
74859048 TATGATATTG
74859058 TATCTTGGATTTCCT
1 TATCTTGGATTTCCT
*
74859073 TATGTTGGATTT-CT
1 TATCTTGGATTTCCT
74859087 CTATCTTGGA
1 -TATCTTGGA
74859097 GATCCTGGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 2 0.10
15 19 0.90
ACGTcount: A:0.15, C:0.15, G:0.18, T:0.51
Consensus pattern (15 bp):
TATCTTGGATTTCCT
Found at i:74861244 original size:18 final size:20
Alignment explanation
Indices: 74861208--74861254 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
74861198 AGTTGTAAGT
74861208 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
74861228 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
74861247 ATGATATA
1 AT-ATATA
74861255 ACTTGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:74861793 original size:102 final size:100
Alignment explanation
Indices: 74861604--74861793 Score: 222
Period size: 102 Copynumber: 1.9 Consensus size: 100
74861594 CCATTGTGAG
* * *
74861604 TCACGTGTGTAGTACTACGTGCAGCTACTACGTGTACTAGATTGATAGGTCGCATGTGTAGTACG
1 TCACGTGTGTAATACTAAGTGCAGCTACTACGTGTACTAGATGGATAGGTCGCATGTGTAGTACG
*
74861669 AAGTGCAAGCTACTATGCGTACCCGTTAACTTCGA
66 AAGTGCAAGCTACTACGCGTACCCGTTAACTTCGA
* * * *
74861704 TCACGTGTGTAATACTAAGTGTAGGCTACTACGTGTA-TCAGATGGTTATGTCACGTAT-TGTAG
1 TCACGTGTGTAATACTAAGTGCA-GCTACTACGTGTACT-AGATGGATAGGT--CGCATGTGTAG
* * * *
74861767 TACTAAGTGCAGGTTACTACGTGTACC
62 TACGAAGTGCAAGCTACTACGCGTACC
74861794 AGATTGATAG
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
100 21 0.28
101 22 0.30
102 27 0.36
103 4 0.05
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (100 bp):
TCACGTGTGTAATACTAAGTGCAGCTACTACGTGTACTAGATGGATAGGTCGCATGTGTAGTACG
AAGTGCAAGCTACTACGCGTACCCGTTAACTTCGA
Found at i:74861822 original size:101 final size:101
Alignment explanation
Indices: 74861704--74861997 Score: 281
Period size: 101 Copynumber: 2.9 Consensus size: 101
74861694 TTAACTTCGA
* * * * * * *
74861704 TCACGTGTGTAATACTAAGTGTAGGCTACTACGTGTATCAGATGGTTATGTCACGTATTGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTACGTCACGTATTGTAGTA
* * * *
74861769 CTAAGTGCAGGTTACTACGTGTACCAGATTGATAGG
66 CTAAGTGCAGGCTACTAAGTGTACCAGATGGATAAG
* * * * * * * *
74861805 TCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGTTAACTT-CGATCAAGT-GTGTAG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-AGTTACG-TCACGTATTGTAG
* * *
74861868 TACTAAGTGCAGGCTATTAAGTGTATCAGATGGTTAAG
64 TACTAAGTGCAGGCTACTAAGTGTACCAGATGGATAAG
* * * * *
74861906 TCACATGTGTAGTACTAAGTGCAGACTATTATGTGTACCAGATTGATAGGTCAC--ATGTGTAGT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTACGTCACGTAT-TGTAGT
*
74861969 ACTAAGTGCAGGCTACTATGTGTACCAGA
65 ACTAAGTGCAGGCTACTAAGTGTACCAGA
74861998 GAGCTTCGGT
Statistics
Matches: 150, Mismatches: 38, Indels: 11
0.75 0.19 0.06
Matches are distributed among these distances:
100 36 0.24
101 107 0.71
102 7 0.05
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (101 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTACGTCACGTATTGTAGTA
CTAAGTGCAGGCTACTAAGTGTACCAGATGGATAAG
Found at i:74861827 original size:50 final size:50
Alignment explanation
Indices: 74861609--74861997 Score: 331
Period size: 50 Copynumber: 7.7 Consensus size: 50
74861599 GTGAGTCACG
* * *
74861609 TGTGTAGTACTACGTGCA-GCTACTACGTGTACTAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
* * * * * * * * *
74861658 TGTGTAGTACGAAGTGCAAGCTACTATGCGTACCCG-TTAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGA--TAGGTCGCA
* * * * * * * *
74861709 TGTGTAATACTAAGTGTAGGCTACTACGTGTATCAGATGGTTATGTCACGTA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGT--CGCA
* *
74861761 T-TGTAGTACTAAGTGCAGGTTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
* * * **
74861810 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCG-TT-A-ACTTCGATCAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCG--C-A
* * * * * * *
74861860 GTGTGTAGTACTAAGTGCAGGCTATTAAGTGTATCAGATGGTTAAGTCACA
1 -TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
* * *
74861911 TGTGTAGTACTAAGTGCAGACTATTATGTGTACCAGATTGATAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
74861961 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
74861998 GAGCTTCGGT
Statistics
Matches: 264, Mismatches: 62, Indels: 27
0.75 0.18 0.08
Matches are distributed among these distances:
47 4 0.02
48 1 0.00
49 26 0.10
50 124 0.47
51 101 0.38
52 5 0.02
54 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
Found at i:74861909 original size:152 final size:152
Alignment explanation
Indices: 74861602--74861994 Score: 596
Period size: 152 Copynumber: 2.6 Consensus size: 152
74861592 ATCCATTGTG
* * *
74861602 AGTCACGT-GTGTAGTACTACGTGCA-GCTACTACGTGTACTAGATTGATAGGTCGCATGTGTAG
1 AGTCACGTATTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAG
* * *
74861665 TACGAAGTGCAAGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAATACTAAGTGTAGGC
66 TACTAAGTGCAAGCTACTATGCGTACCCGTTAACTTCGATCAAGTGTGTAATACTAAGTGCAGGC
*
74861730 TACTACGTGTATCAGATGGTTA
131 TACTAAGTGTATCAGATGGTTA
* *
74861752 TGTCACGTATTGTAGTACTAAGTGCAGGTTACTACGTGTACCAGATTGATAGGTCGCATGTGTAG
1 AGTCACGTATTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAG
*
74861817 TACTAAGTGCAAGCTACTATGCGTACCCGTTAACTTCGATCAAGTGTGTAGTACTAAGTGCAGGC
66 TACTAAGTGCAAGCTACTATGCGTACCCGTTAACTTCGATCAAGTGTGTAATACTAAGTGCAGGC
*
74861882 TATTAAGTGTATCAGATGGTTA
131 TACTAAGTGTATCAGATGGTTA
* * * *
74861904 AGTCAC--ATGTGTAGTACTAAGTGCAGACTATTATGTGTACCAGATTGATAGGTCACATGTGTA
1 AGTCACGTAT-TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTA
* *
74861967 GTACTAAGTGCAGGCTACTATGTGTACC
65 GTACTAAGTGCAAGCTACTATGCGTACC
74861995 AGAGAGCTTC
Statistics
Matches: 221, Mismatches: 19, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
150 9 0.04
151 90 0.41
152 122 0.55
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (152 bp):
AGTCACGTATTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAG
TACTAAGTGCAAGCTACTATGCGTACCCGTTAACTTCGATCAAGTGTGTAATACTAAGTGCAGGC
TACTAAGTGTATCAGATGGTTA
Found at i:74866761 original size:30 final size:31
Alignment explanation
Indices: 74866727--74866784 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
74866717 ATTAGTCTAG
74866727 TAATTAATTATAA-TT-AACTCAATTAATCTT
1 TAATTAATTA-AACTTAAACTCAATTAATCTT
*
74866757 TAATTAATTAAACTTAAACTTAATTAAT
1 TAATTAATTAAACTTAAACTCAATTAAT
74866785 ATATTTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 2 0.08
30 12 0.48
31 11 0.44
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.45
Consensus pattern (31 bp):
TAATTAATTAAACTTAAACTCAATTAATCTT
Found at i:74866765 original size:15 final size:16
Alignment explanation
Indices: 74866742--74866784 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
74866732 AATTATAATT
* *
74866742 AACTCAATTAATCTTT
1 AACTTAATTAATCTTA
*
74866758 AA-TTAATTAAACTTA
1 AACTTAATTAATCTTA
74866773 AACTTAATTAAT
1 AACTTAATTAAT
74866785 ATATTTGGTG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.42
Consensus pattern (16 bp):
AACTTAATTAATCTTA
Found at i:74885979 original size:24 final size:24
Alignment explanation
Indices: 74885920--74885982 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
74885910 TTAAAATCAT
74885920 TAAAATTTAT-AAA-AAACTTATA
1 TAAAATTTATAAAATAAACTTATA
* * *
74885942 -AATAAATTAAAAAATAAACTTTTA
1 TAA-AATTTATAAAATAAACTTATA
74885966 TAAAATTTATAAAATAA
1 TAAAATTTATAAAATAA
74885983 TTTATTAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
21 2 0.06
22 5 0.16
23 3 0.09
24 20 0.62
25 2 0.06
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (24 bp):
TAAAATTTATAAAATAAACTTATA
Found at i:74886000 original size:31 final size:31
Alignment explanation
Indices: 74885965--74886024 Score: 86
Period size: 33 Copynumber: 1.9 Consensus size: 31
74885955 ATAAACTTTT
*
74885965 ATAAAATTT-ATAAAATAATTTATTAAAAACC
1 ATAAAATTTAAAAAAATAATTTA-TAAAAACC
74885996 ATAAAATTTAGAAAAAATAATTTATAAAA
1 ATAAAATTTA-AAAAAATAATTTATAAAA
74886025 GTTTCTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 9 0.35
32 5 0.19
33 12 0.46
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (31 bp):
ATAAAATTTAAAAAAATAATTTATAAAAACC
Found at i:74886284 original size:19 final size:21
Alignment explanation
Indices: 74886242--74886286 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
74886232 TTTAATAAAA
*
74886242 TTTTATAAAATATTTAATTAT
1 TTTTATAAAATATTTAATGAT
*
74886263 TTTTATAAAAT-TTT-ATGGT
1 TTTTATAAAATATTTAATGAT
74886282 TTTTA
1 TTTTA
74886287 ATTAATTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 8 0.36
20 3 0.14
21 11 0.50
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (21 bp):
TTTTATAAAATATTTAATGAT
Found at i:74889402 original size:48 final size:48
Alignment explanation
Indices: 74889344--74889581 Score: 214
Period size: 48 Copynumber: 5.0 Consensus size: 48
74889334 GGGTTATTGC
* * *
74889344 GATCCCGTATAAGACCATATCCGGGATATGACATCGGCATCGATGTGA
1 GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATATGA
* * * *
74889392 GATCCTGTATAAGACCATGTCTGGGACATGGCATCAGCATC-ATTATGA
1 GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGA-TATGA
* * * * * ** * *
74889440 GAACCCATATAAGACCACATTTTGGACCTGGCATCGACGTCG-TATGA
1 GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATATGA
* * *
74889487 GGTCCCGTATAAGACCATATCTGGGATATGGCATCGGCACCGAGT-TAA
1 GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGA-TATGA
** * * *
74889535 GATCCTATGTAAGACCATATCTGGGATAAGGCATTGGCATCG-TATGA
1 GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATATGA
74889582 TATGTATGAG
Statistics
Matches: 147, Mismatches: 38, Indels: 11
0.75 0.19 0.06
Matches are distributed among these distances:
46 1 0.01
47 39 0.27
48 106 0.72
49 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (48 bp):
GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATATGA
Found at i:74889568 original size:95 final size:95
Alignment explanation
Indices: 74889351--74889581 Score: 216
Period size: 95 Copynumber: 2.4 Consensus size: 95
74889341 TGCGATCCCG
* * * * * *
74889351 TATAAGACCATATCCGGGATATGACATCGGCATCGATGTGAGATCCTGTATAAGACCATGTCTGG
1 TATAAGACCATATCTGGGATATGGCATCGACATCGATATGAGATCCCGTATAAGACCATATCTGG
*
74889416 GACATGGCATCAGCATCATTATGAGAACCCA
66 GACATGGCATCAGCACCATTA-GAGAACCCA
* * * ** * *
74889447 TATAAGACCACATTTTGGACCTGGCATCGACGTCG-TATGAGGTCCCGTATAAGACCATATCTGG
1 TATAAGACCATATCTGGGATATGGCATCGACATCGATATGAGATCCCGTATAAGACCATATCTGG
* * * *
74889511 GATATGGCATCGGCACCGAGTTA-AGATCCTA
66 GACATGGCATCAGCACC-A-TTAGAGAACCCA
* * * *
74889542 TGTAAGACCATATCTGGGATAAGGCATTGGCATCG-TATGA
1 TATAAGACCATATCTGGGATATGGCATCGACATCGATATGA
74889582 TATGTATGAG
Statistics
Matches: 105, Mismatches: 28, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
95 75 0.71
96 27 0.26
97 3 0.03
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.25
Consensus pattern (95 bp):
TATAAGACCATATCTGGGATATGGCATCGACATCGATATGAGATCCCGTATAAGACCATATCTGG
GACATGGCATCAGCACCATTAGAGAACCCA
Found at i:74891861 original size:44 final size:42
Alignment explanation
Indices: 74891799--74891881 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 42
74891789 TCACTAGGAA
* *
74891799 ATATGTGATCTGATCTCATGAGTT-ATGTTCTGAGTTCATGAT
1 ATATGTGATCTGAACTCATGAGTTGA-GGTCTGAGTTCATGAT
*
74891841 ATATGTGACATCTGAACTCATGATTTGAGGTCTGAGTTCAT
1 ATATGTG--ATCTGAACTCATGAGTTGAGGTCTGAGTTCAT
74891882 AATAAATATG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 7 0.20
44 27 0.77
45 1 0.03
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.40
Consensus pattern (42 bp):
ATATGTGATCTGAACTCATGAGTTGAGGTCTGAGTTCATGAT
Found at i:74899695 original size:38 final size:38
Alignment explanation
Indices: 74899644--74899838 Score: 252
Period size: 38 Copynumber: 5.1 Consensus size: 38
74899634 TTAAGCTCAA
74899644 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
*
74899682 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
** * * *
74899720 ATATAATTTCAGCACGAAGCCTGCGGGCTTTAACTCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
*
74899758 ATATAATACCAGCA-TGAAGCTTGCGGGATTTAACCCGG
1 ATATAATACCAGCACT-AAGCCTGCGGGATTTAACCCGG
*
74899796 ATATAATTCCAGCA-TATAGCCTGC-GGATCTTTAAGCCCGG
1 ATATAATACCAGCACTA-AGCCTGCGGGA--TTTAA-CCCGG
74899836 ATA
1 ATA
74899839 CACATCAAAT
Statistics
Matches: 139, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
37 4 0.03
38 122 0.88
39 5 0.04
40 8 0.06
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
Found at i:74918291 original size:27 final size:27
Alignment explanation
Indices: 74918261--74918603 Score: 225
Period size: 27 Copynumber: 12.7 Consensus size: 27
74918251 TGTAGGGTAG
* *
74918261 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGATTTACAA
** * *
74918288 AATTA-CTGAATACCCTTGGTTTAAAA
1 AATTACCAAAATACCCTTGATTTACAA
* *
74918314 AATTACCAAAATACCCTCGA-TTAGAAA
1 AATTACCAAAATACCCTTGATTTA-CAA
* *
74918341 AATTACCAAAATACCCCT-AGTTTATAA
1 AATTACCAAAATACCCTTGA-TTTACAA
***
74918368 AATTACCAAAATACCCTTGATTTGTGA
1 AATTACCAAAATACCCTTGATTTACAA
* ** ***
74918395 AATTACCAAAATACCCTCGACCTGTGA
1 AATTACCAAAATACCCTTGATTTACAA
* *
74918422 AATTACCGAAATACCCTCGATTT-CTAA
1 AATTACCAAAATACCCTTGATTTAC-AA
* **
74918449 AATTACCAAAATGCCCTTGATTTGGAA
1 AATTACCAAAATACCCTTGATTTACAA
* * * *
74918476 AATTATCGAAATACCCTTAATTTAGAA
1 AATTACCAAAATACCCTTGATTTACAA
*
74918503 AATTA-CAGAAATACTCC-TAATTTACAA
1 AATTACCA-AAATAC-CCTTGATTTACAA
*
74918530 AATTACAAAAATACCCTTGACTTT-CAAA
1 AATTACCAAAATACCCTTGA-TTTAC-AA
* * * *
74918558 AATTA-TAGAAATACCATTGGTTTGCAA
1 AATTACCA-AAATACCCTTGATTTACAA
* * *
74918585 AATTATCGAAATACTCTTG
1 AATTACCAAAATACCCTTG
74918604 GTTTGTAGAT
Statistics
Matches: 258, Mismatches: 42, Indels: 32
0.78 0.13 0.10
Matches are distributed among these distances:
26 29 0.11
27 201 0.78
28 28 0.11
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTACAA
Found at i:74918411 original size:81 final size:80
Alignment explanation
Indices: 74918261--74918549 Score: 268
Period size: 81 Copynumber: 3.6 Consensus size: 80
74918251 TGTAGGGTAG
* * * ** * **
74918261 AATTACTAAAATACCCTTGGTTTACAAAATTA-CTGAATACCCTTGGTTTAAAAAATTACCAAAA
1 AATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTTGATTT-GGAAATTACCAAAA
74918325 TACCCTCGA-TTAGAAA
65 TACCCTCGACTTAG-AA
*
74918341 AATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCTTGATTTGTGAAATTACCAAAA
1 AATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTTGATTTG-GAAATTACCAAAA
74918406 TACCCTCGACCTGT-G-A
65 TACCCTCGA-CT-TAGAA
* * * * *
74918422 AATTACCGAAATA-CCCTCGATTT-CTAAAATTACCAAAATGCCCTTGATTTGGAAAATTATCGA
1 AATTACCAAAATACCCCTAG-TTTAC-AAAATTACCAAAATACCCTTGATTTGG-AAATTACCAA
** *
74918485 AATACCCTTAATTTAGAA
63 AATACCCTCGACTTAGAA
* * *
74918503 AATTA-CAGAAATACTCCTAATTTACAAAATTACAAAAATACCCTTGA
1 AATTACCA-AAATACCCCTAGTTTACAAAATTACCAAAATACCCTTGA
74918550 CTTTCAAAAA
Statistics
Matches: 172, Mismatches: 24, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
79 1 0.01
80 37 0.22
81 127 0.74
82 4 0.02
83 2 0.01
84 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.29
Consensus pattern (80 bp):
AATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTTGATTTGGAAATTACCAAAAT
ACCCTCGACTTAGAA
Found at i:74918596 original size:82 final size:81
Alignment explanation
Indices: 74918421--74918600 Score: 197
Period size: 82 Copynumber: 2.2 Consensus size: 81
74918411 TCGACCTGTG
* * * ** *
74918421 AAATTACCGAAATAC-CCTCGATTTCTAAAATTACCAAAATGCCCTTGATTTGGAAAATTATCGA
1 AAATTA-CGAAATACTCCTCAATTTCTAAAATTACAAAAATACCCTTGATTTCAAAAATTATAGA
*
74918485 AATACCCTTAATTTAGA
65 AATACCATTAATTTAGA
74918502 AAATTACAGAAATACTCCT-AATTTAC-AAAATTACAAAAATACCCTTGACTTTCAAAAATTATA
1 AAATTAC-GAAATACTCCTCAATTT-CTAAAATTACAAAAATACCCTTGA-TTTCAAAAATTATA
**
74918565 GAAATACCATTGGTTT-GCA
63 GAAATACCATTAATTTAG-A
74918584 AAATTATCGAAATACTC
1 AAATTA-CGAAATACTC
74918601 TTGGTTTGTA
Statistics
Matches: 84, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
80 1 0.01
81 38 0.45
82 44 0.52
83 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (81 bp):
AAATTACGAAATACTCCTCAATTTCTAAAATTACAAAAATACCCTTGATTTCAAAAATTATAGAA
ATACCATTAATTTAGA
Found at i:74918918 original size:41 final size:41
Alignment explanation
Indices: 74918868--74918947 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
74918858 GGAGGAAGAA
*
74918868 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCATGGATCCACCG
* * *
74918909 ATTGTGGATCTCATGGTTGCTTGACGATCATGGATCCAC
1 ATTGAGGATCGCATGGTTGCTTGACGACCATGGATCCAC
74918948 TGGTGGCTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCATGGATCCACCG
Found at i:74919348 original size:22 final size:22
Alignment explanation
Indices: 74919323--74919367 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
74919313 GTTGCTGCGA
74919323 TGTTTACAGCTATGTGCTGTCC
1 TGTTTACAGCTATGTGCTGTCC
* * *
74919345 TGTTTACGGTTATGTGTTGTCC
1 TGTTTACAGCTATGTGCTGTCC
74919367 T
1 T
74919368 ATCTACGGCG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.11, C:0.18, G:0.24, T:0.47
Consensus pattern (22 bp):
TGTTTACAGCTATGTGCTGTCC
Found at i:74919374 original size:22 final size:22
Alignment explanation
Indices: 74919333--74919375 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
74919323 TGTTTACAGC
* *
74919333 TATGTGCTGTCCTGTTTACGGT
1 TATGTGCTGTCCTATCTACGGT
*
74919355 TATGTGTTGTCCTATCTACGG
1 TATGTGCTGTCCTATCTACGG
74919376 CGTTGAGCCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.12, C:0.19, G:0.26, T:0.44
Consensus pattern (22 bp):
TATGTGCTGTCCTATCTACGGT
Found at i:74928702 original size:44 final size:45
Alignment explanation
Indices: 74928648--74928732 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
74928638 ACGTATAAAA
* *
74928648 CATGGACTTACTCACACA-CATATATCGGAATCACATATCGCTGC
1 CATGGACTTACTCACACATCACATATCAGAATCACATATCGCTGC
* *
74928692 CATGGTCTTACTCGCACATCACATATCAGAATCACATATCG
1 CATGGACTTACTCACACATCACATATCAGAATCACATATCG
74928733 ATGACAACGT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 16 0.44
45 20 0.56
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (45 bp):
CATGGACTTACTCACACATCACATATCAGAATCACATATCGCTGC
Found at i:74928728 original size:101 final size:101
Alignment explanation
Indices: 74928599--74928839 Score: 328
Period size: 101 Copynumber: 2.4 Consensus size: 101
74928589 AGACAGGGTT
* *
74928599 TTACTCGCACA-CATATATCAGAATCACATTTCGATGCCAACGTA-TAAAACATGGACTTAC-TC
1 TTACTCGCACATCACATATCAGAATCACATATCGATGCCAACGTATTAAAA-ATGGACTTACTTC
* *
74928661 A-CACACATATATCGGAATCACATATCGCTGCCATGGTC
65 AGCACACATATAT--GAATCACACATCGATGCCATGGTC
* * *
74928699 TTACTCGCACATCACATATCAGAATCACATATCGATGACAACGTATTAAAAATGGTCTTACTTGA
1 TTACTCGCACATCACATATCAGAATCACATATCGATGCCAACGTATTAAAAATGGACTTACTTCA
*
74928764 GCACATATATATGAATCACACATCGATGCCATGGTC
66 GCACACATATATGAATCACACATCGATGCCATGGTC
* *
74928800 TTACTCGCACATCACATATCAGAATTCACATGTCAATGCC
1 TTACTCGCACATCACATATCAGAA-TCACATATCGATGCC
74928840 TCATATACAT
Statistics
Matches: 125, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
100 11 0.09
101 85 0.68
102 19 0.15
103 10 0.08
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (101 bp):
TTACTCGCACATCACATATCAGAATCACATATCGATGCCAACGTATTAAAAATGGACTTACTTCA
GCACACATATATGAATCACACATCGATGCCATGGTC
Found at i:74931474 original size:29 final size:29
Alignment explanation
Indices: 74931411--74931478 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
74931401 TAATCAACCG
74931411 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
74931440 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
74931469 CGCACACTTA
1 CGCACACTTA
74931479 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:74931590 original size:174 final size:174
Alignment explanation
Indices: 74931300--74931627 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
74931290 AACTCAAGGT
* *
74931300 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
74931365 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
74931430 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
74931474 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
74931539 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
74931604 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
74931628 TGTACAATTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:74931619 original size:29 final size:30
Alignment explanation
Indices: 74931580--74931658 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
74931570 CTTAATAATC
74931580 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
74931610 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
74931639 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
74931659 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:74934016 original size:27 final size:27
Alignment explanation
Indices: 74933986--74934158 Score: 247
Period size: 27 Copynumber: 6.4 Consensus size: 27
74933976 TTACAAAATG
*
74933986 ATTGAAATACCCCTGTACGGTAGAATT
1 ATTGAAATACCCCTGTAGGGTAGAATT
74934013 ATTGAAATACCCCTGTAGGGTAGAATT
1 ATTGAAATACCCCTGTAGGGTAGAATT
* * *
74934040 ACTGAAATACCCCTGTAGGGTATATTT
1 ATTGAAATACCCCTGTAGGGTAGAATT
*
74934067 ATTGAAATACCCCTGTAAGGTAGAATT
1 ATTGAAATACCCCTGTAGGGTAGAATT
* *
74934094 ACTGAAATACCCCCGTAGGGTAGAATT
1 ATTGAAATACCCCTGTAGGGTAGAATT
***
74934121 ACCAAAATACCCCTGTAGGGTAGAATT
1 ATTGAAATACCCCTGTAGGGTAGAATT
*
74934148 ATTGAGATACC
1 ATTGAAATACC
74934159 TTTGTGGGGT
Statistics
Matches: 128, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (27 bp):
ATTGAAATACCCCTGTAGGGTAGAATT
Found at i:74934169 original size:54 final size:54
Alignment explanation
Indices: 74933988--74934178 Score: 220
Period size: 54 Copynumber: 3.5 Consensus size: 54
74933978 ACAAAATGAT
* * ***
74933988 TGAAATACCCCTGTACGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTAC
* * *** *
74934042 TGAAATACCCCTGTAGGGTATATTTATTGAAATACCCCTGTAAGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTAC
* * *
74934096 TGAAATACCCCCGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTAC
* ** *
74934150 TGAGATACCTTTGTGGGGTAAAATTACCA
1 TGAAATACCCCTGTAGGGTAAAATTACCA
74934179 TTTTGCCCCT
Statistics
Matches: 119, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 119 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (54 bp):
TGAAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTAC
Found at i:74934176 original size:81 final size:81
Alignment explanation
Indices: 74933986--74934158 Score: 274
Period size: 81 Copynumber: 2.1 Consensus size: 81
74933976 TTACAAAATG
* * * **
74933986 ATTGAAATACCCCTGTACGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTACTGAAATACC
1 ATTGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCCGTAGGGTAGAATTACCAAAATACC
* *
74934051 CCTGTAGGGTATATTT
66 CCTGTAGGGTAGAATT
74934067 ATTGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCCGTAGGGTAGAATTACCAAAATACC
1 ATTGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCCGTAGGGTAGAATTACCAAAATACC
74934132 CCTGTAGGGTAGAATT
66 CCTGTAGGGTAGAATT
*
74934148 ATTGAGATACC
1 ATTGAAATACC
74934159 TTTGTGGGGT
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 84 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (81 bp):
ATTGAAATACCCCTGTAAGGTAGAATTACTGAAATACCCCCGTAGGGTAGAATTACCAAAATACC
CCTGTAGGGTAGAATT
Found at i:74934823 original size:27 final size:26
Alignment explanation
Indices: 74934786--74934920 Score: 117
Period size: 27 Copynumber: 5.0 Consensus size: 26
74934776 ATTCTGTTAA
* * *
74934786 GTGGCTTTGCCACATTATCTATTTGTG
1 GTGGCTATGCCACAATATCTA-TTCTG
74934813 GTGGCTATGCCACAAATATCTATTCTG
1 GTGGCTATGCCAC-AATATCTATTCTG
* * * *
74934840 GTGGCTATGCCACAAATACCTGTTTTA
1 GTGGCTATGCCAC-AATATCTATTCTG
* *
74934867 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTAT-TCTG
* * * *
74934894 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTATGCCACAATATCTATTCTG
74934920 G
1 G
74934921 CAGCCATGCT
Statistics
Matches: 93, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
26 13 0.14
27 73 0.78
28 7 0.08
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTATTCTG
Found at i:74934908 original size:54 final size:53
Alignment explanation
Indices: 74934813--74934916 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 53
74934803 TCTATTTGTG
*
74934813 GTGGCTATGCCACAAATATCTATTCTGGTGGCTATGCCACAAATACCTGTTTTA
1 GTGGCTATGCCACAAATATCTATTCTGGTGACTATGCCAC-AATACCTGTTTTA
* * * * *
74934867 GTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCTGTCACAATATCTGTT
1 GTGGCTATGCCACAAATATCTAT-TCTGGTGACTATGCCACAATACCTGTT
74934917 CTGGCAGCCA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
53 17 0.40
54 26 0.60
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (53 bp):
GTGGCTATGCCACAAATATCTATTCTGGTGACTATGCCACAATACCTGTTTTA
Found at i:74935047 original size:6 final size:6
Alignment explanation
Indices: 74935038--74935166 Score: 68
Period size: 6 Copynumber: 20.8 Consensus size: 6
74935028 TTGCATTCAC
* * * *
74935038 ATTCTG ATTCTG ATTCTG -TTACTTG ATACTG ATTCTA ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
74935088 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
74935138 ATTCTG ATTCTG ATACTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
74935167 AGTTCTAATA
Statistics
Matches: 91, Mismatches: 20, Indels: 24
0.67 0.15 0.18
Matches are distributed among these distances:
5 5 0.05
6 72 0.79
7 10 0.11
8 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:74935069 original size:25 final size:25
Alignment explanation
Indices: 74935038--74935151 Score: 174
Period size: 25 Copynumber: 4.6 Consensus size: 25
74935028 TTGCATTCAC
* * *
74935038 ATTCTGATTCTGATTCTGTTACTTG
1 ATTCTGATTCTGATTCTGTCACCTA
* *
74935063 ATACTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
74935088 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
*
74935113 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTA
74935138 ATTCTGATTCTGAT
1 ATTCTGATTCTGAT
74935152 ACTCATTTTG
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 81 1.00
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:74935090 original size:13 final size:13
Alignment explanation
Indices: 74935072--74935118 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
74935062 GATACTGATT
74935072 CTAATTCTGTCAC
1 CTAATTCTGTCAC
*
74935085 CTAATTCTG--ATT
1 CTAATTCTGTCA-C
*
74935097 CTGATTCTGTCAC
1 CTAATTCTGTCAC
74935110 CTAATTCTG
1 CTAATTCTG
74935119 ATTCTGATTC
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
11 1 0.04
12 8 0.30
13 17 0.63
14 1 0.04
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.43
Consensus pattern (13 bp):
CTAATTCTGTCAC
Found at i:74937269 original size:27 final size:27
Alignment explanation
Indices: 74937242--74937673 Score: 567
Period size: 27 Copynumber: 16.0 Consensus size: 27
74937232 CAAAATGATT
**
74937242 GAAATACCCCTGTAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
74937269 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
74937296 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
74937323 GAAATGCCCCTGTACGATAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
74937350 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
74937377 GAAATACCCCTTTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
74937404 GAGATACCCCTGTAGGTTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
74937431 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
74937458 GAAATATCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
74937485 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
74937512 GAAATGCCCCTATAAGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * * * **
74937539 GAAATGCCTCTATAGGGTATAACTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
74937566 AAAATACCTCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
74937593 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
74937620 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
74937647 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
74937674 ATTTTGCCCC
Statistics
Matches: 357, Mismatches: 48, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 357 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:74938313 original size:27 final size:26
Alignment explanation
Indices: 74938283--74938418 Score: 130
Period size: 27 Copynumber: 5.1 Consensus size: 26
74938273 ATTTTGTTAA
* *
74938283 GTGGCTTTACCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTG-TTCTG
*
74938310 GTGGCTATT-CCACAAATATCTGTTCTA
1 GTGGCT-TTGCCAC-AATATCTGTTCTG
* *
74938337 GTGGCTATGCCACAAATACCTGTTCTG
1 GTGGCTTTGCCAC-AATATCTGTTCTG
* * *
74938364 GTGGCTCTGCCACAATATCTATATCTA
1 GTGGCTTTGCCACAATATCTGT-TCTG
* *
74938391 GTGACTTTGTCACAATATCTGTTCTG
1 GTGGCTTTGCCACAATATCTGTTCTG
74938417 GT
1 GT
74938419 AGCCATGCTG
Statistics
Matches: 91, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
26 13 0.14
27 69 0.76
28 9 0.10
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (26 bp):
GTGGCTTTGCCACAATATCTGTTCTG
Found at i:74938417 original size:53 final size:53
Alignment explanation
Indices: 74938292--74938418 Score: 148
Period size: 54 Copynumber: 2.4 Consensus size: 53
74938282 AGTGGCTTTA
* * * *
74938292 CCACATTATCTGTTTCTGGTGGCTATTCCACAAATATCTGTTCTAGTGGCTATG
1 CCACAATATCTG-TTCTGGTGGCTATGCCACAAATATCTATTCTAGTGACTATG
* * *
74938346 CCACAAATACCTGTTCTGGTGGCTCTGCCAC-AATATCTATATCTAGTGACTTTG
1 CCAC-AATATCTGTTCTGGTGGCTATGCCACAAATATCTAT-TCTAGTGACTATG
*
74938400 TCACAATATCTGTTCTGGT
1 CCACAATATCTGTTCTGGT
74938419 AGCCATGCTG
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
53 22 0.35
54 34 0.55
55 6 0.10
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (53 bp):
CCACAATATCTGTTCTGGTGGCTATGCCACAAATATCTATTCTAGTGACTATG
Found at i:74938542 original size:6 final size:6
Alignment explanation
Indices: 74938533--74938651 Score: 75
Period size: 6 Copynumber: 19.3 Consensus size: 6
74938523 GATTATTCAT
* * * * *
74938533 ATTCTG ATTCTA ATTCT- ATTACTTG ATACTG ATTCTT ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
74938583 ATTCTG ATTCTG ATTCTG ATTCT- ATCACCTG ATTCTG ATTCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
74938632 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
74938652 AATGTTTCTT
Statistics
Matches: 87, Mismatches: 15, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
5 7 0.08
6 68 0.78
7 7 0.08
8 5 0.06
ACGTcount: A:0.21, C:0.19, G:0.11, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:74938589 original size:25 final size:25
Alignment explanation
Indices: 74938533--74938600 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
74938523 GATTATTCAT
* * * *
74938533 ATTCTGATTCTAATTCTATTACTTG
1 ATTCTGATTCTAATTCTGTCACCTA
* *
74938558 ATACTGATTCTTATTCTGTCACCTA
1 ATTCTGATTCTAATTCTGTCACCTA
*
74938583 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTAATTCTG
74938601 ATTCTATCAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.22, C:0.19, G:0.10, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTAATTCTGTCACCTA
Found at i:74938596 original size:31 final size:31
Alignment explanation
Indices: 74938556--74938630 Score: 114
Period size: 31 Copynumber: 2.4 Consensus size: 31
74938546 TTCTATTACT
* * *
74938556 TGATACTGATTCTTATTCTGTCACCTAATTC
1 TGATTCTGATTCTGATTCTATCACCTAATTC
*
74938587 TGATTCTGATTCTGATTCTATCACCTGATTC
1 TGATTCTGATTCTGATTCTATCACCTAATTC
74938618 TGATTCTGATTCT
1 TGATTCTGATTCT
74938631 CATTTTGATT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.47
Consensus pattern (31 bp):
TGATTCTGATTCTGATTCTATCACCTAATTC
Found at i:74940478 original size:27 final size:27
Alignment explanation
Indices: 74940450--74940638 Score: 261
Period size: 27 Copynumber: 7.0 Consensus size: 27
74940440 ACAAAATGAT
*
74940450 TGAAATACCCCTGTAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
74940477 TGAAATACCCCTATAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
74940504 TGAAATACCCCTGTAGGGTATAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
74940531 TGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* *
74940558 TGAAATACCCCCGTACGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
**
74940585 CAAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * * * *
74940612 CGAGATACCCTTGTGGGGTAAAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
74940639 CATTTTGCCC
Statistics
Matches: 144, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
TGAAATACCCCTGTAGGGTAGAATTAC
Found at i:74941267 original size:6 final size:6
Alignment explanation
Indices: 74941238--74941312 Score: 55
Period size: 6 Copynumber: 12.3 Consensus size: 6
74941228 CTGTCACCTA
* * * *
74941238 ATTCTA ATTCTA ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
74941287 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
74941313 AATATTTCTT
Statistics
Matches: 55, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
5 2 0.04
6 48 0.87
7 4 0.07
8 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:74941267 original size:37 final size:37
Alignment explanation
Indices: 74941217--74941303 Score: 120
Period size: 37 Copynumber: 2.4 Consensus size: 37
74941207 TACTTGATAT
74941217 TGATTCTGATTCTGTCACCTAATTCTAATTCTAATTC
1 TGATTCTGATTCTGTCACCTAATTCTAATTCTAATTC
* * * *
74941254 TGATTCTGATTCTGTCACCTGATTCTGATTTTGATTC
1 TGATTCTGATTCTGTCACCTAATTCTAATTCTAATTC
* *
74941291 TCATTTTGATTCT
1 TGATTCTGATTCT
74941304 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.49
Consensus pattern (37 bp):
TGATTCTGATTCTGTCACCTAATTCTAATTCTAATTC
Found at i:74941277 original size:19 final size:19
Alignment explanation
Indices: 74941217--74941283 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
74941207 TACTTGATAT
74941217 TGATTCTGATTCTGTCACC
1 TGATTCTGATTCTGTCACC
* * * *
74941236 TAATTCTAATTC--TAATTC
1 TGATTCTGATTCTGTCA-CC
74941254 TGATTCTGATTCTGTCACC
1 TGATTCTGATTCTGTCACC
74941273 TGATTCTGATT
1 TGATTCTGATT
74941284 TTGATTCTCA
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
17 2 0.05
18 11 0.30
19 22 0.59
20 2 0.05
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.46
Consensus pattern (19 bp):
TGATTCTGATTCTGTCACC
Found at i:74948561 original size:15 final size:15
Alignment explanation
Indices: 74948541--74948581 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
74948531 CATGAAAACC
74948541 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
74948556 GAATAAA-AAGATCCA
1 GAATAAAGAA-ATCCA
*
74948571 GGATAAAGAAA
1 GAATAAAGAAA
74948582 CCTAAGATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 19 0.83
16 2 0.09
ACGTcount: A:0.61, C:0.10, G:0.17, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:74951642 original size:93 final size:93
Alignment explanation
Indices: 74951530--74951701 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
74951520 GCCCATAAGT
* *
74951530 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74951595 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
74951623 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
74951688 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
74951702 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:74951697 original size:46 final size:46
Alignment explanation
Indices: 74951522--74951697 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
74951512 TGTAACCCGC
* *
74951522 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
74951568 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
74951614 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
74951661 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
74951698 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Done.