Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 217 of 290
Found at i:74952422 original size:39 final size:39
Alignment explanation
Indices: 74952379--74952453 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
74952369 CATATTCTAT
*
74952379 CATAAAACACCAAAA-AACACAAATTTCACCTATGGGGAC
1 CATAAAACACCAAAATAA-ACAAATTTAACCTATGGGGAC
* *
74952418 CATAAAACATCAAAATAAACACATTTAACCTATGGG
1 CATAAAACACCAAAATAAACAAATTTAACCTATGGG
74952454 TATTTTTCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
39 30 0.94
40 2 0.06
ACGTcount: A:0.49, C:0.23, G:0.09, T:0.19
Consensus pattern (39 bp):
CATAAAACACCAAAATAAACAAATTTAACCTATGGGGAC
Found at i:74955492 original size:27 final size:27
Alignment explanation
Indices: 74955453--74955506 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
74955443 ATCATAGCAC
*
74955453 AAATCAGTCTTTTACCCTCGAGGGGTA
1 AAATCAGTCTTTTACCCTAGAGGGGTA
*
74955480 AAAT-AGTCATTTTACCCTATAGGGGTA
1 AAATCAGTC-TTTTACCCTAGAGGGGTA
74955507 TTTTGGAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (27 bp):
AAATCAGTCTTTTACCCTAGAGGGGTA
Found at i:74960175 original size:47 final size:45
Alignment explanation
Indices: 74960107--74960558 Score: 288
Period size: 47 Copynumber: 9.7 Consensus size: 45
74960097 TTTGTGCACT
* * * *
74960107 AGTGTAAGACATGTTTGGGACATGCTTCAGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGAGAGCC
* * *
74960153 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAAAGATGAGTGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACAGATGAGAGCC
* * *
74960201 AGAGTAAGACATGTTTGGGACATGCATCGGCCTCGACAGA-GATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACAGATGAGAGCC
* * * * * **
74960248 AGTGTAAGACGTGTCTGGGACACGCATCGGCTA-AGA-GTTGTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATG-AGAGCC
* * * *
74960292 AGTGAAAGACATGTTTGGGACATGCATCAG-CATGCATCTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA--CA--GATGAGAGCC
* * * *
74960340 AGTGTAAGACCATGTCTGAGACATGGCATCGGCATAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACAGATGAGAGCC
* * *
74960388 AGAGTAAGACATGTCTGGGACATGTATCGGCCTCGACAGAT-ATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-C-C-ACAGATGAGAGCC
* * * * * * *
74960435 AGTGTAAGACGTGTCTGGGACACGTATCGGCTA-AGA-GTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATG-AGAGCC
* * * *
74960479 AGTGTAAGACATGTCTGGAACATGCATCAGCATGCATATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC---CACAGATGAGAGCC
74960527 AGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
74960559 TAATATATCC
Statistics
Matches: 308, Mismatches: 71, Indels: 50
0.72 0.17 0.12
Matches are distributed among these distances:
43 8 0.03
44 56 0.18
46 25 0.08
47 104 0.34
48 71 0.23
49 30 0.10
50 13 0.04
52 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGAGAGCC
Found at i:74960319 original size:91 final size:91
Alignment explanation
Indices: 74960105--74960506 Score: 354
Period size: 94 Copynumber: 4.3 Consensus size: 91
74960095 GATTTGTGCA
* * * * * *
74960105 CTAGTGTAAGACATGTTTGGGACATGCTTCAG-C-C-ACATTATGAGAGCCAGTGTAAGACCATG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACA-GA-GATAGCCAGTGTAAGA-CGTG
* * *
74960167 TCTGGGACATGGCATCGGC-ACAAAGATGAGTGG
63 TCTGGGACA-CGCATCGGCTA-AGAG-T-TGT-G
* *
74960200 C-AGAGTAAGACATGTTTGGGACATGCATCGGCCTCGACAGAGATAGCCAGTGTAAGACGTGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATAGCCAGTGTAAGACGTGTCT
74960264 GGGACACGCATCGGCTAAGAGTTGTG
66 GGGACACGCATCGGCTAAGAGTTGTG
* * * * * *
74960290 TTAGTGAAAGACATGTTTGGGACATGCATCAGCAT-GCATCTATGAG--AGCCAGTGTAAGACCA
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-A-C-A-GAGATAGCCAGTGTAAGA-CG
* * *
74960352 TGTCTGAGACATGGCATCGGC-ATAGAGATGAGTG
61 TGTCTGGGACA-CGCATCGGCTA-AGAG-T-TGTG
* * * *
74960386 CCAGAGTAAGACATGTCTGGGACATGTATCGGCCTCGACAGATATAGCCAGTGTAAGACGTGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATAGCCAGTGTAAGACGTGTCT
*
74960451 GGGACACGTATCGGCTAAGAGTTGTG
66 GGGACACGCATCGGCTAAGAGTTGTG
*
74960477 CTAGTGTAAGACATGTCTGGAACATGCATC
1 CTAGTGTAAGACATGTCTGGGACATGCATC
74960507 AGCATGCATA
Statistics
Matches: 253, Mismatches: 36, Indels: 40
0.77 0.11 0.12
Matches are distributed among these distances:
90 2 0.01
91 61 0.24
92 16 0.06
93 37 0.15
94 68 0.27
95 32 0.13
96 33 0.13
97 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (91 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATAGCCAGTGTAAGACGTGTCT
GGGACACGCATCGGCTAAGAGTTGTG
Found at i:74960425 original size:187 final size:186
Alignment explanation
Indices: 74960105--74960558 Score: 750
Period size: 187 Copynumber: 2.4 Consensus size: 186
74960095 GATTTGTGCA
*
74960105 CTAGTGTAAGACATGTTTGGGACATGCTTCAGCCA--CATTATGAGAGCCAGTGTAAGACCATGT
1 CTAGTGTAAGACATGTTTGGGACATGCATCAG-CATGCATTATGAGAGCCAGTGTAAGACCATGT
* *
74960168 CTGGGACATGGCATCGGCACAAAGATGAGTGGCAGAGTAAGACATGTTTGGGACATGCATCGGCC
65 CTGGGACATGGCATCGGCACAAAGATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCC
74960233 TCGACAGAGATAGCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGTG
130 TCGACAGAGATAGCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGTG
* *
74960290 TTAGTGAAAGACATGTTTGGGACATGCATCAGCATGCATCTATGAGAGCCAGTGTAAGACCATGT
1 CTAGTGTAAGACATGTTTGGGACATGCATCAGCATGCAT-TATGAGAGCCAGTGTAAGACCATGT
* * * *
74960355 CTGAGACATGGCATCGGCATAGAGATGAGTGCCAGAGTAAGACATGTCTGGGACATGTATCGGCC
65 CTGGGACATGGCATCGGCACAAAGATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCC
* *
74960420 TCGACAGATATAGCCAGTGTAAGACGTGTCTGGGACACGTATCGGCTAAGAGTTGTG
130 TCGACAGAGATAGCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGTG
* *
74960477 CTAGTGTAAGACATGTCTGGAACATGCATCAGCATGCATATATGAGAGCCAGTGTAAGACCATGT
1 CTAGTGTAAGACATGTTTGGGACATGCATCAGCATGCAT-TATGAGAGCCAGTGTAAGACCATGT
74960542 CTGGGACATGGCATCGG
65 CTGGGACATGGCATCGG
74960559 TAATATATCC
Statistics
Matches: 249, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
184 2 0.01
185 29 0.12
186 3 0.01
187 215 0.86
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (186 bp):
CTAGTGTAAGACATGTTTGGGACATGCATCAGCATGCATTATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCACAAAGATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCCT
CGACAGAGATAGCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGTG
Found at i:74963243 original size:5 final size:5
Alignment explanation
Indices: 74963233--74963265 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
74963223 CACACTATGA
*
74963233 AAAAT AAAAT AAAAT AAAGT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
74963266 TAACGCACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:74967951 original size:16 final size:18
Alignment explanation
Indices: 74967930--74967967 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
74967920 TTCTATATGG
*
74967930 ATTTTA-CATT-TATTTT
1 ATTTTACCATTGTATTTC
74967946 ATTTTACCATTGTATTTC
1 ATTTTACCATTGTATTTC
74967964 ATTT
1 ATTT
74967968 CAATAAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 4 0.21
18 9 0.47
ACGTcount: A:0.24, C:0.11, G:0.03, T:0.63
Consensus pattern (18 bp):
ATTTTACCATTGTATTTC
Found at i:74973116 original size:45 final size:45
Alignment explanation
Indices: 74973057--74973147 Score: 148
Period size: 45 Copynumber: 2.0 Consensus size: 45
74973047 ATATCGTACA
* *
74973057 ATGCCAACGTCCCAGACGTGGTCTTACATGTA-ATCACATATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACATG-AGAACACATATATCG
74973102 ATGCCAACATCCCAGACGTGGTCTTACATGAGAACACATATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACATGAGAACACATATATCG
74973147 A
1 A
74973148 AAATCTTATG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 1 0.02
45 42 0.98
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (45 bp):
ATGCCAACATCCCAGACGTGGTCTTACATGAGAACACATATATCG
Found at i:74982079 original size:53 final size:55
Alignment explanation
Indices: 74981933--74982138 Score: 178
Period size: 53 Copynumber: 3.9 Consensus size: 55
74981923 CTAAAGTTTC
* * * *
74981933 TAAGGCAAGGATACTATGTAAAACCATGTCAAGACATGCCATTGATAAGTTACTA
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTA
* * * * * **
74981988 TAAGGAAAAGTTCCCATGTAAGACCAT-TCCAAGGCATGGCATTGGTGGGTT-C-A
1 TAAGGCAAGGATACCATGTAAGACCATGT-CAAGACATGGCATTGGTAAGTTACTA
* * *
74982041 TAAGGCAAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTC-A
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTA
* * * *
74982095 -AA-G---GGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
74982139 GTACCCATGT
Statistics
Matches: 124, Mismatches: 24, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
49 37 0.30
52 1 0.01
53 43 0.35
54 5 0.04
55 38 0.31
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.22
Consensus pattern (55 bp):
TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTACTA
Found at i:74982176 original size:23 final size:23
Alignment explanation
Indices: 74982146--74982189 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
74982136 AAGGTACCCA
74982146 TGTATCCTTAGTATTCCAAGTCG
1 TGTATCCTTAGTATTCCAAGTCG
*
74982169 TGTATCCTTAGTATTCTAAGT
1 TGTATCCTTAGTATTCCAAGT
74982190 GGTTCAACGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (23 bp):
TGTATCCTTAGTATTCCAAGTCG
Found at i:74984656 original size:93 final size:93
Alignment explanation
Indices: 74984497--74984676 Score: 315
Period size: 93 Copynumber: 1.9 Consensus size: 93
74984487 TGAGAGAGTG
* *
74984497 TGTAAGGCAGAGGAGCTATTAAAAAGAAAGGGCAAAGTTGAAATTGAGATGCAAGACACGAAGAA
1 TGTAAGGCAGAGGAGCTATTAAAAAGAAAGGGAAAAGTTGAAATTGAGACGCAAGACACGAAGAA
*
74984562 AAGACCAATGAGCAAGTCATTTTGAGCC
66 AAGACCAATAAGCAAGTCATTTTGAGCC
*
74984590 TGTAAGGCAGAGGAGCTATTAAAAAGAAAGGGAAAAGTTGAAATTGAGACGCAAGACATGAAGAA
1 TGTAAGGCAGAGGAGCTATTAAAAAGAAAGGGAAAAGTTGAAATTGAGACGCAAGACACGAAGAA
*
74984655 AATACCAATAAGCAAGTCATTT
66 AAGACCAATAAGCAAGTCATTT
74984677 CATTCTACAT
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 82 1.00
ACGTcount: A:0.45, C:0.12, G:0.26, T:0.18
Consensus pattern (93 bp):
TGTAAGGCAGAGGAGCTATTAAAAAGAAAGGGAAAAGTTGAAATTGAGACGCAAGACACGAAGAA
AAGACCAATAAGCAAGTCATTTTGAGCC
Found at i:74987221 original size:41 final size:43
Alignment explanation
Indices: 74987159--74987296 Score: 129
Period size: 45 Copynumber: 3.2 Consensus size: 43
74987149 ATGTAATCAC
* * *
74987159 ATATCAATGCCATTGTCCCAGATAGGGTCTTACACGAATCA-A-
1 ATATCGATGCCAATGTCCCAGA-AGGGTCTTACACGAACCACAT
* *
74987201 ATA-CGATGCCAATGTCCCAGACATGATCTTACACGTAACCACAT
1 ATATCGATGCCAATGTCCCAGA-AGGGTCTTACACG-AACCACAT
* * *
74987245 ATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAGAACACAT
1 ATATCGATGCCAATGTCCCAGAAG-GGTCTTACACGA-ACCACAT
*
74987290 ATCTCGA
1 ATATCGA
74987297 AAATCCTATG
Statistics
Matches: 78, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
41 27 0.35
42 7 0.09
43 1 0.01
44 4 0.05
45 39 0.50
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.23
Consensus pattern (43 bp):
ATATCGATGCCAATGTCCCAGAAGGGTCTTACACGAACCACAT
Found at i:74987280 original size:86 final size:84
Alignment explanation
Indices: 74987122--74987281 Score: 205
Period size: 84 Copynumber: 1.9 Consensus size: 84
74987112 ATATCGTACA
* * * * **
74987122 ATGCCAACGTCCCAGACGTGTTCTTACATGTAATCACATATCAATGCCATTGTCCCAGATAGGGT
1 ATGCCAACGTCCCAGACATGATCTTACACGTAACCACATATCAATGCCAACGTCCCAGATAGGGT
74987187 CTTACACGAATCAAATACG
66 CTTACACGAATCAAATACG
* * *
74987206 ATGCCAATGTCCCAGACATGATCTTACACGTAACCACATATATCGATGCCAACGTCCCAGA-CGT
1 ATGCCAACGTCCCAGACATGATCTTACACGTAACCAC--ATATCAATGCCAACGTCCCAGATAG-
74987270 GGTCTTACACGA
63 GGTCTTACACGA
74987282 GAACACATAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
84 32 0.50
85 1 0.02
86 31 0.48
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACATGATCTTACACGTAACCACATATCAATGCCAACGTCCCAGATAGGGT
CTTACACGAATCAAATACG
Found at i:74987291 original size:45 final size:44
Alignment explanation
Indices: 74987122--74987280 Score: 175
Period size: 45 Copynumber: 3.7 Consensus size: 44
74987112 ATATCGTACA
* * *
74987122 ATGCCAACGTCCCAGACGTGTTCTTACATGTAATCAC-ATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACAATATCG
** *
74987165 ATGCCATTGTCCCAGATAG-GGTCTTACACG-AATCA-AATA-CG
1 ATGCCAACGTCCCAGA-CGTGGTCTTACACGTAATCACAATATCG
* * * *
74987206 ATGCCAATGTCCCAGACATGATCTTACACGTAACCACATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACA-ATATCG
74987251 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
74987281 AGAACACATA
Statistics
Matches: 95, Mismatches: 14, Indels: 12
0.79 0.12 0.10
Matches are distributed among these distances:
41 26 0.27
42 12 0.13
43 24 0.25
44 4 0.04
45 29 0.31
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACAATATCG
Found at i:75001825 original size:15 final size:15
Alignment explanation
Indices: 75001760--75001844 Score: 64
Period size: 15 Copynumber: 5.7 Consensus size: 15
75001750 AAAAATAACC
* *
75001760 AGAAAACCAAGATAG
1 AGAAATCCAAGATAA
* **
75001775 AGAAATCCGAGATGG
1 AGAAATCCAAGATAA
* *
75001790 AG-AAGCCCAGAATAA
1 AGAAATCCAAG-ATAA
*
75001805 ATAAATCCAAGATAA
1 AGAAATCCAAGATAA
*
75001820 AGAAATCCATGATAA
1 AGAAATCCAAGATAA
*
75001835 GGAAATCCAA
1 AGAAATCCAA
75001845 ATTATAATAC
Statistics
Matches: 54, Mismatches: 14, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
14 6 0.11
15 42 0.78
16 6 0.11
ACGTcount: A:0.53, C:0.15, G:0.19, T:0.13
Consensus pattern (15 bp):
AGAAATCCAAGATAA
Found at i:75010632 original size:79 final size:82
Alignment explanation
Indices: 75010521--75010705 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
75010511 GCTACTCGTT
* *
75010521 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
75010584 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
75010601 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
75010664 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
75010681 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75010706 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:75010705 original size:40 final size:40
Alignment explanation
Indices: 75010502--75010705 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
75010492 CGGAATTTAA
** *
75010502 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75010542 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
75010582 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75010621 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
75010661 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
75010701 CCGGA
1 CCGGA
75010706 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:75013586 original size:40 final size:40
Alignment explanation
Indices: 75013541--75013776 Score: 212
Period size: 40 Copynumber: 5.9 Consensus size: 40
75013531 CGAATACACG
* * * *
75013541 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* ** *
75013581 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
75013621 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
75013661 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
75013701 GTAACTC-GCACCAATGC-CTTC-GGATCTTAGTCCGGATATGG
1 -TCAC-CAGCACGAATGCTCTTCGGGA-CTTAGCCCGGATAT-A
* *
75013742 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
75013777 CATCATTCGA
Statistics
Matches: 160, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
39 3 0.02
40 139 0.87
41 18 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:75013762 original size:120 final size:120
Alignment explanation
Indices: 75013541--75013776 Score: 270
Period size: 120 Copynumber: 2.0 Consensus size: 120
75013531 CGAATACACG
* * *
75013541 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACCAGCATGAATACTCTTCGGGACCTAGCCCGGATATAACACCAGCACCAATGCTCTTCGGGA
*
75013606 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
66 TTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACA
* * * *
75013661 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAAC-TC-GCACCAATGC-CTTC-
1 TCACCAGCATGAATACTCTTCGGGACCTAGCCCGGA--TA-TAACACCAGCACCAATGCTCTTCG
* *
75013722 GGATCTTAGTC-CGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
63 GGAT-TTAG-CACGGATAT-ATCAC-TAGCACGAAAGCTCTTCGGAACTTAGCCCGGA
75013777 CATCATTCGA
Statistics
Matches: 99, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
119 3 0.03
120 65 0.66
121 18 0.18
122 9 0.09
123 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
TCACCAGCATGAATACTCTTCGGGACCTAGCCCGGATATAACACCAGCACCAATGCTCTTCGGGA
TTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACA
Found at i:75014121 original size:29 final size:29
Alignment explanation
Indices: 75014082--75014160 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
75014072 CTTAATAATC
*
75014082 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75014112 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75014141 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75014161 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75014203 original size:43 final size:43
Alignment explanation
Indices: 75014142--75014244 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
75014132 TGCATTTCAA
75014142 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
75014185 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
75014228 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
75014245 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:75016160 original size:37 final size:37
Alignment explanation
Indices: 75016110--75016188 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
75016100 TTATTACGAA
* * *
75016110 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
75016147 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
75016184 GTCTT
1 GTCTT
75016189 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:75016414 original size:49 final size:49
Alignment explanation
Indices: 75016309--75016437 Score: 124
Period size: 49 Copynumber: 2.7 Consensus size: 49
75016299 CTTCGGGACT
* * * *
75016309 TATCACAT-T-TATGCACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
75016356 TGTCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* *
75016405 TATCTC--ATATATGCA-TGTTCACATCCATCACAT
1 TATCACATATATATACACT-TTCACATCCATCACAT
75016438 AGAATCCTAA
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
46 1 0.01
47 30 0.45
48 1 0.01
49 35 0.52
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:75019503 original size:27 final size:27
Alignment explanation
Indices: 75019465--75019624 Score: 169
Period size: 27 Copynumber: 5.9 Consensus size: 27
75019455 ATATACACAT
* * *
75019465 CACATAGGGGCAAAACAATCCTCTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
* * * *
75019492 CATATAAGGGCAAAATAGTAATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
*
75019519 CACATAA-TGCAAAAACAATCATTTTAC
1 CACATAAGGGC-AAAACAATCATTTTAC
* * * *
75019546 CATATAAGGGCTAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
*
75019573 CACATAAAGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
* *
75019600 CACATAAGGGCAAGACAGTCATTTT
1 CACATAAGGGCAAAACAATCATTTT
75019625 GATCAATCAG
Statistics
Matches: 106, Mismatches: 25, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
26 2 0.02
27 102 0.96
28 2 0.02
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAACAATCATTTTAC
Found at i:75019547 original size:54 final size:54
Alignment explanation
Indices: 75019473--75019612 Score: 210
Period size: 54 Copynumber: 2.6 Consensus size: 54
75019463 ATCACATAGG
* *
75019473 GGCAAAACAATCCTCTTACCATATAAGGGCAAAATAGTAATTTTACCACAT-AA
1 GGCAAAACAATCATTTTACCATATAAGGGCAAAATAGTAATTTTACCACATAAA
* * *
75019526 TGCAAAAACAATCATTTTACCATATAAGGGCTAAATAGTCATTTTACCACATAAA
1 GGC-AAAACAATCATTTTACCATATAAGGGCAAAATAGTAATTTTACCACATAAA
*
75019581 GGCAAAACAATCATTTTACCACATAAGGGCAA
1 GGCAAAACAATCATTTTACCATATAAGGGCAA
75019613 GACAGTCATT
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
53 2 0.03
54 71 0.92
55 4 0.05
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.25
Consensus pattern (54 bp):
GGCAAAACAATCATTTTACCATATAAGGGCAAAATAGTAATTTTACCACATAAA
Found at i:75022801 original size:40 final size:40
Alignment explanation
Indices: 75022742--75022842 Score: 127
Period size: 40 Copynumber: 2.5 Consensus size: 40
75022732 TATTCGGATG
* *
75022742 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-CT
**
75022782 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCT
75022822 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
75022843 ATACTTGGGT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 13 0.24
40 39 0.71
41 2 0.04
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGCT
Found at i:75029583 original size:27 final size:27
Alignment explanation
Indices: 75029552--75029729 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
75029542 TAAATTGTAC
75029552 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
75029579 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75029605 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
75029633 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
75029661 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75029688 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75029715 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75029730 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75029666 original size:82 final size:81
Alignment explanation
Indices: 75029553--75029708 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
75029543 AAATTGTACA
* *
75029553 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
75029617 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
75029634 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
75029699 TGCGAGTTGA
65 TGCGAATTGA
75029709 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:75029720 original size:82 final size:81
Alignment explanation
Indices: 75029549--75029729 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
75029539 GATTAAATTG
* *
75029549 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
75029614 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
75029630 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
75029694 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
75029712 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
75029730 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:75042884 original size:21 final size:21
Alignment explanation
Indices: 75042867--75042910 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
75042857 ACCAAGAGTC
75042867 AAAAGGAGACAAAAAAGAGCCA
1 AAAAGG-GACAAAAAAGAGCCA
*
75042889 AAAAGGGACAAAATAGA-CCA
1 AAAAGGGACAAAAAAGAGCCA
75042909 AA
1 AA
75042911 TCGAGAAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.24
21 10 0.48
22 6 0.29
ACGTcount: A:0.64, C:0.14, G:0.20, T:0.02
Consensus pattern (21 bp):
AAAAGGGACAAAAAAGAGCCA
Found at i:75043461 original size:14 final size:14
Alignment explanation
Indices: 75043442--75043468 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
75043432 ATATTTTACT
75043442 TGTTCTTAATTATG
1 TGTTCTTAATTATG
75043456 TGTTCTTAATTAT
1 TGTTCTTAATTAT
75043469 TGCTTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:75048134 original size:26 final size:26
Alignment explanation
Indices: 75048105--75048156 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
75048095 ATTATAATGA
75048105 TTTTCTAAAAACAGAACAAGGGACCC
1 TTTTCTAAAAACAGAACAAGGGACCC
* *
75048131 TTTTCTAAAAATAGAACAGGGGACCC
1 TTTTCTAAAAACAGAACAAGGGACCC
75048157 CGAAGTCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.21
Consensus pattern (26 bp):
TTTTCTAAAAACAGAACAAGGGACCC
Found at i:75049134 original size:43 final size:44
Alignment explanation
Indices: 75048991--75049144 Score: 158
Period size: 43 Copynumber: 3.6 Consensus size: 44
75048981 CGGCATTTCA
** * * * *
75048991 CCTGCTAGGCTTGAAGCCCG-ATATCAT-TGCACCTGAATTATAG
1 CCTGCTAGGCCCGAAGCCCGAATATTATCT-CACCAGCATTAAAG
* *
75049034 CCTGCTAGGCCCGAAGCCCG-ATATTATCTCACCGGCATTATAG
1 CCTGCTAGGCCCGAAGCCCGAATATTATCTCACCAGCATTAAAG
75049077 CCTGCTAGGCCCGAAGCCCGATAATATTAT-TCACCAGC-TTAAAG
1 CCTGCTAGGCCCGAAGCCCG--AATATTATCTCACCAGCATTAAAG
*
75049121 CTTGCTAGG-CCGAAGCCCGAATAT
1 CCTGCTAGGCCCGAAGCCCGAATAT
75049145 CACATTTCGA
Statistics
Matches: 99, Mismatches: 8, Indels: 10
0.85 0.07 0.09
Matches are distributed among these distances:
41 5 0.05
43 66 0.67
44 14 0.14
45 7 0.07
46 7 0.07
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (44 bp):
CCTGCTAGGCCCGAAGCCCGAATATTATCTCACCAGCATTAAAG
Found at i:75068495 original size:23 final size:23
Alignment explanation
Indices: 75068469--75068513 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
75068459 TGGGTATGTG
*
75068469 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
75068492 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
75068514 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:75093260 original size:43 final size:44
Alignment explanation
Indices: 75093189--75093310 Score: 124
Period size: 44 Copynumber: 2.8 Consensus size: 44
75093179 GTTATCAAAT
* * * * * *
75093189 ATCGACGCCACTGTCCCAGATAGGGTCTTATA-GAAAAT-T-AT
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAAATCTGAA
* *
75093230 ATACGAATGCCAATGTCCCAGACATAGTCTTACACGTAAATCTGAA
1 AT-CG-ATGCCAATGTCCCAGACATGGTCTTACACGAAAATCTGAA
*
75093276 ATCGATGCCGATGTCCCAGACATGGTCTTACACGA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGA
75093311 TATCACATCT
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
41 2 0.03
42 2 0.03
43 22 0.34
44 33 0.51
45 3 0.05
46 3 0.05
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (44 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAAATCTGAA
Found at i:75104589 original size:19 final size:19
Alignment explanation
Indices: 75104567--75104636 Score: 88
Period size: 20 Copynumber: 3.7 Consensus size: 19
75104557 TTTTATACAA
*
75104567 ATGAATTACTGTTATAGGG
1 ATGAATTACTGTTATACGG
*
75104586 ATGAAGTACTGTTTATACGG
1 ATGAATTACTG-TTATACGG
* *
75104606 ATGAGTTACTGTTAT-CGA
1 ATGAATTACTGTTATACGG
75104624 ATGAATTACTGTT
1 ATGAATTACTGTT
75104637 TATATGATTG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
18 14 0.32
19 14 0.32
20 16 0.36
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.39
Consensus pattern (19 bp):
ATGAATTACTGTTATACGG
Found at i:75104637 original size:38 final size:39
Alignment explanation
Indices: 75104558--75104640 Score: 105
Period size: 39 Copynumber: 2.2 Consensus size: 39
75104548 AAATCTATGT
* *
75104558 TTTATACAAATGAATTACTGTTATAGGGATGAAGTACTG
1 TTTATACAAATGAATTACTGTTATACGAATGAAGTACTG
** * *
75104597 TTTATACGGATGAGTTACTGTTAT-CGAATGAATTACTG
1 TTTATACAAATGAATTACTGTTATACGAATGAAGTACTG
75104635 TTTATA
1 TTTATA
75104641 TGATTGAGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
38 17 0.45
39 21 0.55
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (39 bp):
TTTATACAAATGAATTACTGTTATACGAATGAAGTACTG
Found at i:75104639 original size:19 final size:19
Alignment explanation
Indices: 75104559--75104636 Score: 86
Period size: 19 Copynumber: 4.1 Consensus size: 19
75104549 AATCTATGTT
*
75104559 TTATACAAATGAATTACTG
1 TTATACGAATGAATTACTG
* * *
75104578 TTATAGGGATGAAGTACTG
1 TTATACGAATGAATTACTG
* *
75104597 TTTATACGGATGAGTTACTG
1 -TTATACGAATGAATTACTG
75104617 TTAT-CGAATGAATTACTG
1 TTATACGAATGAATTACTG
75104635 TT
1 TT
75104637 TATATGATTG
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
18 14 0.29
19 19 0.39
20 16 0.33
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (19 bp):
TTATACGAATGAATTACTG
Found at i:75121845 original size:43 final size:43
Alignment explanation
Indices: 75121764--75121848 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
75121754 AAATCGTACA
* **
75121764 ATGCCAATGTTCCAGACGTGGTCTTACATGTAGTCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATCG
*
75121807 ATGCCACTGTCCCAGACAG-GGTCTTAC-TCGTAAACACATATC
1 ATGCCAATGTCCCAGAC-GTGGTCTTACAT-GTAAACACATATC
75121849 AGAATCACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 1 0.03
43 34 0.94
44 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:75123038 original size:14 final size:15
Alignment explanation
Indices: 75123021--75123050 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
75123011 TCACGAAAAT
75123021 TTCACACAT-ATAAA
1 TTCACACATAATAAA
75123035 TTCACACATAATAAA
1 TTCACACATAATAAA
75123050 T
1 T
75123051 ACAAAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:75124052 original size:43 final size:42
Alignment explanation
Indices: 75124001--75124139 Score: 163
Period size: 43 Copynumber: 3.3 Consensus size: 42
75123991 TATCCCGGAT
* *
75124001 ATGGTCTTACATGCTATCACATATCGATGCCATTGTCCCAGAC
1 ATGGTCTTACACG-TATCACATATCGATGCCAATGTCCCAGAC
* * * * *
75124044 AGGGTCTTACACGAATTATATA-CGATGCCAATGTCGCAGAC
1 ATGGTCTTACACGTATCACATATCGATGCCAATGTCCCAGAC
* * *
75124085 ATGGTCTTACACGTAGTCTCATATCGATGCCAATGTCTCAAAC
1 ATGGTCTTACACGTA-TCACATATCGATGCCAATGTCCCAGAC
75124128 ATGGTCTTACAC
1 ATGGTCTTACAC
75124140 AAAATCACAC
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
41 30 0.38
42 10 0.12
43 40 0.50
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (42 bp):
ATGGTCTTACACGTATCACATATCGATGCCAATGTCCCAGAC
Found at i:75131775 original size:41 final size:43
Alignment explanation
Indices: 75131706--75131828 Score: 153
Period size: 41 Copynumber: 2.9 Consensus size: 43
75131696 CTTACATGCT
* * * *
75131706 ATCATATATCATTGCCACTATCCCAGACAGGGTCTAACACG-A
1 ATCATATATCAATGCCAATGTCCCAGACATGGTCTAACACGTA
* *
75131748 ATCATATA-CAATGCCAATGTCCTAGACATGGTCTTACACGTA
1 ATCATATATCAATGCCAATGTCCCAGACATGGTCTAACACGTA
*
75131790 ATC-TCATATCGATGCCAATGTCCCAGACATGGTCTAACA
1 ATCAT-ATATCAATGCCAATGTCCCAGACATGGTCTAACA
75131829 TGAAATCACA
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
41 27 0.39
42 15 0.22
43 27 0.39
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.26
Consensus pattern (43 bp):
ATCATATATCAATGCCAATGTCCCAGACATGGTCTAACACGTA
Found at i:75146358 original size:31 final size:32
Alignment explanation
Indices: 75146318--75146389 Score: 119
Period size: 31 Copynumber: 2.3 Consensus size: 32
75146308 TACACGGCTT
*
75146318 ACAGCCATCAGTAGCAGTAATTTGATTGGCAC
1 ACAGCCATCAGTAGCAGTAATATGATTGGCAC
*
75146350 A-AGCCATCAGTAGCTGTAATATGATTGGCAC
1 ACAGCCATCAGTAGCAGTAATATGATTGGCAC
75146381 ACAGCCATC
1 ACAGCCATC
75146390 GGTAAATATG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 29 0.78
32 8 0.22
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (32 bp):
ACAGCCATCAGTAGCAGTAATATGATTGGCAC
Found at i:75146435 original size:27 final size:27
Alignment explanation
Indices: 75146367--75146441 Score: 69
Period size: 27 Copynumber: 2.8 Consensus size: 27
75146357 CAGTAGCTGT
* **
75146367 AATATGATTGGCACACAGCCATCGGTA
1 AATATGATAGGCACACAGCCATCAATA
* * * * *
75146394 AATATGGTCGACACAGAGTCATCAATA
1 AATATGATAGGCACACAGCCATCAATA
*
75146421 AATATGATAGGCACATAGCCA
1 AATATGATAGGCACACAGCCA
75146442 CTGGTAAATA
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (27 bp):
AATATGATAGGCACACAGCCATCAATA
Found at i:75146944 original size:27 final size:27
Alignment explanation
Indices: 75146914--75146992 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
75146904 TACCCTATAA
* * *
75146914 GGGTATTTTGGTGATTTTATAAATTGG
1 GGGTATTTTAGTAATTTTATAAATCGG
*
75146941 GGGTATTTTAGTAATTTTATGAATCGG
1 GGGTATTTTAGTAATTTTATAAATCGG
* *
75146968 GGGTA-TTTCGTTAATTTTACAAATC
1 GGGTATTTTAG-TAATTTTATAAATC
75146993 AAGGTCTTAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 4 0.09
27 40 0.91
ACGTcount: A:0.25, C:0.05, G:0.24, T:0.46
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTATAAATCGG
Found at i:75147224 original size:17 final size:18
Alignment explanation
Indices: 75147202--75147237 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
75147192 TTTATCTGTG
75147202 TGGGCCCACAA-GCCCAT
1 TGGGCCCACAAGGCCCAT
*
75147219 TGGGCCCATAAGGCCCAT
1 TGGGCCCACAAGGCCCAT
75147237 T
1 T
75147238 TCAGCCCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.22, C:0.36, G:0.25, T:0.17
Consensus pattern (18 bp):
TGGGCCCACAAGGCCCAT
Found at i:75150084 original size:46 final size:46
Alignment explanation
Indices: 75149983--75150070 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
75149973 TGTAACCCGC
* * *
75149983 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
75150029 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
75150071 AACCATCCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:75152482 original size:30 final size:30
Alignment explanation
Indices: 75152438--75152526 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
75152428 CAAAGATAAC
75152438 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
75152467 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
75152497 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
75152527 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:75152486 original size:15 final size:15
Alignment explanation
Indices: 75152438--75152517 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
75152428 CAAAGATAAC
*
75152438 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
75152452 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
75152467 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
75152482 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
75152497 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
75152512 AAGAAA
1 AAGAAA
75152518 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:75152526 original size:15 final size:15
Alignment explanation
Indices: 75152449--75152526 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
75152439 AGAAAACCGA
75152449 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
75152464 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
75152478 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
75152493 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
75152509 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
75152524 ATA
1 ATA
75152527 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:75159192 original size:15 final size:15
Alignment explanation
Indices: 75159172--75159200 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
75159162 AACCGAATAA
75159172 AGAAATCCAAGATAG
1 AGAAATCCAAGATAG
75159187 AGAAATCCAAGATA
1 AGAAATCCAAGATA
75159201 CATTACTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
AGAAATCCAAGATAG
Found at i:75168311 original size:25 final size:25
Alignment explanation
Indices: 75168282--75168331 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
75168272 CAATGAAAAG
*
75168282 CTAAAGCTTTAGATTAGTTTATCTC
1 CTAAAGCTTTAAATTAGTTTATCTC
75168307 CTAAAGCTTTAAATTAGTTTATCTC
1 CTAAAGCTTTAAATTAGTTTATCTC
75168332 GTTTCTATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.44
Consensus pattern (25 bp):
CTAAAGCTTTAAATTAGTTTATCTC
Found at i:75173889 original size:53 final size:54
Alignment explanation
Indices: 75173804--75174010 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 54
75173794 TTTCTTTTTA
* * * *
75173804 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
75173857 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCATTGCCTTATCG
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * ** * * * *
75173911 TAGTCTATCAAGGCCATGTATTGACATGGTCCTACATGATTTCCTTGCCTTATAA
1 AACTC-ACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
75173966 AACTTACCAATGCCATTCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
75174011 AAACCCTAAT
Statistics
Matches: 118, Mismatches: 34, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
53 46 0.39
54 34 0.29
55 38 0.32
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:75187065 original size:31 final size:31
Alignment explanation
Indices: 75187027--75187085 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
75187017 CTTGTAGCCA
*
75187027 AAGCTACCACTATTCACTGATCAGGTAGTCG
1 AAGCTACCACTATTCACTGATCAAGTAGTCG
* *
75187058 AAGCTACCATTTTTCACTGATCAAGTAG
1 AAGCTACCACTATTCACTGATCAAGTAG
75187086 CCGATGATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (31 bp):
AAGCTACCACTATTCACTGATCAAGTAGTCG
Found at i:75187124 original size:30 final size:31
Alignment explanation
Indices: 75187090--75187165 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
75187080 AAGTAGCCGA
* *
75187090 TGATCAGGTAGCTGAAGC-ACCACTTTTCAT
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAC
*
75187120 TGATCAGGTAGCCGAAGCTACCATTTTTCAC
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAC
*
75187151 TGATCAAGTAGCCGA
1 TGATCAGGTAGCCGA
75187166 TGATCAGGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 17 0.41
31 24 0.59
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (31 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCAC
Found at i:75187131 original size:45 final size:46
Alignment explanation
Indices: 75187044--75187134 Score: 132
Period size: 45 Copynumber: 2.0 Consensus size: 46
75187034 CACTATTCAC
*
75187044 TGATCAGGTAGTCGAAGCTACCATTTTTCACTGATCAAGTAGCCGA
1 TGATCAGGTAGTCGAAGCTACCACTTTTCACTGATCAAGTAGCCGA
* *
75187090 TGATCAGGTAG-CTGAAGC-ACCACTTTTCATTGATCAGGTAGCCGA
1 TGATCAGGTAGTC-GAAGCTACCACTTTTCACTGATCAAGTAGCCGA
75187135 AGCTACCATT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
45 25 0.61
46 16 0.39
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (46 bp):
TGATCAGGTAGTCGAAGCTACCACTTTTCACTGATCAAGTAGCCGA
Found at i:75187158 original size:76 final size:77
Alignment explanation
Indices: 75187020--75187193 Score: 296
Period size: 76 Copynumber: 2.3 Consensus size: 77
75187010 CTTGTCACTT
* *
75187020 GTAGCCAAAGCTACCACTATTCACTGATCAGGTAGTCGAAGCTACCATTTTTCACTGATCAAGTA
1 GTAGCCAAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCATTTTTCACTGATCAAGTA
75187085 GCCGATGATCAG
66 GCCGATGATCAG
** *
75187097 GTAGCTGAAGC-ACCACTTTTCATTGATCAGGTAGCCGAAGCTACCATTTTTCACTGATCAAGTA
1 GTAGCCAAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCATTTTTCACTGATCAAGTA
75187161 GCCGATGATCAG
66 GCCGATGATCAG
75187173 GTAGCCAAAGCTACCACTTTT
1 GTAGCCAAAGCTACCACTTTT
75187194 TACTTGTCAT
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
76 71 0.80
77 18 0.20
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (77 bp):
GTAGCCAAAGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCATTTTTCACTGATCAAGTA
GCCGATGATCAG
Found at i:75187267 original size:50 final size:50
Alignment explanation
Indices: 75187173--75187362 Score: 290
Period size: 50 Copynumber: 3.8 Consensus size: 50
75187163 CGATGATCAG
* * * *
75187173 GTAGCCAAAGCTACCACTTTTTACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCAAAGCTATCACTTATCACTT-TCACTTGTCCTTGATCAGATAAGT
*
75187224 GTAGCCAAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCAAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
* *
75187274 GCAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCAAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
* *
75187324 GTAGCCGAAGCTATCACTTATCACTTTCACTTATCCTTG
1 GTAGCCAAAGCTATCACTTATCACTTTCACTTGTCCTTG
75187363 TTGCCATGGT
Statistics
Matches: 131, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
50 108 0.82
51 23 0.18
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (50 bp):
GTAGCCAAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
Found at i:75187698 original size:6 final size:6
Alignment explanation
Indices: 75187687--75187713 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
75187677 CGAGTCATTC
75187687 ATATGT ATATGT ATATGT ATATGT ATA
1 ATATGT ATATGT ATATGT ATATGT ATA
75187714 GTTTTCCTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (6 bp):
ATATGT
Found at i:75194181 original size:61 final size:61
Alignment explanation
Indices: 75194082--75194203 Score: 226
Period size: 61 Copynumber: 2.0 Consensus size: 61
75194072 AAAGTTGAAA
*
75194082 CTCTCAACTTTGCCATGTGTGTGGCCGGCCAAGGGAGGGCTCTTTGGCTGCTGGAATTTGC
1 CTCTCAACTTTGCCATGTGTGTGGCCGGCCAAGGGAGGGCTCTTTGGCTGCTGAAATTTGC
*
75194143 CTCTCAACTTTGCCATGTGTGTGGCCGGCCAAGTGAGGGCTCTTTGGCTGCTGAAATTTGC
1 CTCTCAACTTTGCCATGTGTGTGGCCGGCCAAGGGAGGGCTCTTTGGCTGCTGAAATTTGC
75194204 TAGTTTTAGC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.14, C:0.25, G:0.31, T:0.30
Consensus pattern (61 bp):
CTCTCAACTTTGCCATGTGTGTGGCCGGCCAAGGGAGGGCTCTTTGGCTGCTGAAATTTGC
Found at i:75195829 original size:20 final size:20
Alignment explanation
Indices: 75195806--75195845 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
75195796 TCAACAAAGC
75195806 ATCGCTATAAACAACGAATT
1 ATCGCTATAAACAACGAATT
*
75195826 ATCGCTGTAAACAACGAATT
1 ATCGCTATAAACAACGAATT
75195846 CTTTAACTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.25
Consensus pattern (20 bp):
ATCGCTATAAACAACGAATT
Found at i:75200015 original size:43 final size:43
Alignment explanation
Indices: 75199966--75200112 Score: 176
Period size: 43 Copynumber: 3.4 Consensus size: 43
75199956 ACGATGCCGA
*
75199966 TGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTG
1 TGTCCCAGACACGGTCTTATACATAAATCTCAATCGAGGCCTG
* * * *
75200009 TATCCCAGACACAGTCTTACACA-AAA--TCAGATACGATGCC-G
1 TGTCCCAGACACGGTCTTATACATAAATCTCA-AT-CGAGGCCTG
* *
75200050 ATGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTG
1 -TGTCCCAGACACGGTCTTATACATAAATCTCAATCGAGGCCTG
75200094 TGTCCCAGACACGGTCTTA
1 TGTCCCAGACACGGTCTTA
75200113 CACGATATCT
Statistics
Matches: 85, Mismatches: 12, Indels: 14
0.77 0.11 0.13
Matches are distributed among these distances:
40 3 0.04
41 3 0.04
42 27 0.32
43 46 0.54
44 3 0.04
45 3 0.04
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
TGTCCCAGACACGGTCTTATACATAAATCTCAATCGAGGCCTG
Found at i:75200026 original size:85 final size:85
Alignment explanation
Indices: 75199937--75200117 Score: 326
Period size: 85 Copynumber: 2.1 Consensus size: 85
75199927 CCGAGATAGG
75199937 GTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCG
1 GTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCG
75200002 AGGCCTGTATCCCAGACACA
66 AGGCCTGTATCCCAGACACA
* *
75200022 GTCTTACACAAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCAATCG
1 GTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCG
* *
75200087 AGGCCTGTGTCCCAGACACG
66 AGGCCTGTATCCCAGACACA
75200107 GTCTTACACGA
1 GTCTTACACGA
75200118 TATCTTAGAC
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (85 bp):
GTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCG
AGGCCTGTATCCCAGACACA
Found at i:75202412 original size:40 final size:40
Alignment explanation
Indices: 75202357--75202613 Score: 367
Period size: 40 Copynumber: 6.5 Consensus size: 40
75202347 GGATGATAAT
* * *
75202357 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATC
*
75202397 CGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
75202437 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
75202477 CGGTCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
75202517 CGGGCTAAGTCTCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
75202557 CGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* * *
75202596 CCGGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
75202614 TACTTGGCTT
Statistics
Matches: 198, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 18 0.09
40 180 0.91
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:75210621 original size:40 final size:40
Alignment explanation
Indices: 75210562--75210819 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
75210552 TGGATGATAA
* * *
75210562 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
75210602 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
75210642 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75210682 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75210722 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
75210762 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* * *
75210801 CCCGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75210820 TACTTGGCTT
Statistics
Matches: 201, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 18 0.09
40 183 0.91
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:75215810 original size:43 final size:41
Alignment explanation
Indices: 75215761--75215911 Score: 160
Period size: 43 Copynumber: 3.5 Consensus size: 41
75215751 TCCCAAACGT
* * * * *
75215761 GGTCTTACATGTAACCTCATATCAATGCC-ACTGTCTCAGAC
1 GGTCTTACACGTAATCACATATCGATGCCAAC-GTCCCAGAC
* *
75215802 AGGATCTTACTCGTAAACACATATCGATGCCAACGTCCCAGAC
1 -GG-TCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
75215845 GTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
1 --GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
*
75215888 TTGGTCTTACACGTAATCTCATAT
1 --GGTCTTACACGTAATCACATAT
75215912 TGATATCACA
Statistics
Matches: 95, Mismatches: 11, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
42 2 0.02
43 89 0.94
44 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (41 bp):
GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
Found at i:75215911 original size:86 final size:86
Alignment explanation
Indices: 75215746--75215903 Score: 203
Period size: 86 Copynumber: 1.8 Consensus size: 86
75215736 CGTACAATGT
* * *
75215746 CAACATCCCAAACGTGGTCTTACATGTAACCTCATATCAATGCCACTGTCTCAGACAGGATCTTA
1 CAACATCCCAAACGTGGTCTTACACGTAACCACATATCAATGCCACTGTCCCAGACAGGATCTTA
*
75215811 CTCGTAAACACATATCGATGC
66 CACGTAAACACATATCGATGC
* * * * *
75215832 CAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAAC-GTCCCAGACTTGG-TCT
1 CAACATCCCAAACGTGGTCTTACACGTAACCACATATCAATGCC-ACTGTCCCAGAC-AGGATCT
75215895 TACACGTAA
64 TACACGTAA
75215904 TCTCATATTG
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
86 57 0.93
87 4 0.07
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.25
Consensus pattern (86 bp):
CAACATCCCAAACGTGGTCTTACACGTAACCACATATCAATGCCACTGTCCCAGACAGGATCTTA
CACGTAAACACATATCGATGC
Found at i:75217590 original size:19 final size:19
Alignment explanation
Indices: 75217554--75217592 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
75217544 CCTAAAATTC
75217554 TCACTATTTCACACACTTA
1 TCACTATTTCACACACTTA
*
75217573 TCACTTATTTTACA-ACTTA
1 TCAC-TATTTCACACACTTA
75217592 T
1 T
75217593 GCAAAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.44
Consensus pattern (19 bp):
TCACTATTTCACACACTTA
Found at i:75218749 original size:26 final size:26
Alignment explanation
Indices: 75218720--75218771 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
75218710 CGGGTAGACA
75218720 CATGGGCATGTGTCTAGGCCGTGTGT
1 CATGGGCATGTGTCTAGGCCGTGTGT
*
75218746 CATGGGCATGTGTCTCGGCCGTGTGT
1 CATGGGCATGTGTCTAGGCCGTGTGT
75218772 TCCCTGCACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.10, C:0.21, G:0.38, T:0.31
Consensus pattern (26 bp):
CATGGGCATGTGTCTAGGCCGTGTGT
Found at i:75221245 original size:9 final size:9
Alignment explanation
Indices: 75221231--75221263 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
75221221 GTTAAACGAA
75221231 TCGAGTTAT
1 TCGAGTTAT
*
75221240 TCGAGTTAA
1 TCGAGTTAT
75221249 TCGAGTTAT
1 TCGAGTTAT
75221258 TCGAGT
1 TCGAGT
75221264 CAACTCGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:75221252 original size:18 final size:18
Alignment explanation
Indices: 75221229--75221263 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
75221219 GAGTTAAACG
75221229 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
75221247 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
75221264 CAACTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:75221332 original size:9 final size:9
Alignment explanation
Indices: 75221315--75221351 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
75221305 TAAGTTTTCG
75221315 AATTCGAAT
1 AATTCGAAT
*
75221324 AACTCGAAT
1 AATTCGAAT
75221333 AATTCGAAT
1 AATTCGAAT
75221342 AATTCGAAT
1 AATTCGAAT
75221351 A
1 A
75221352 TTAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:75222273 original size:26 final size:26
Alignment explanation
Indices: 75222244--75222297 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
75222234 AAACAAAATA
* *
75222244 AATTCAAT-TCGATTCGATTCGATTCG
1 AATTCAATCTC-ACTCGACTCGATTCG
*
75222270 AATTCCATCTCACTCGACTCGATTCG
1 AATTCAATCTCACTCGACTCGATTCG
75222296 AA
1 AA
75222298 AAAATTTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (26 bp):
AATTCAATCTCACTCGACTCGATTCG
Found at i:75224257 original size:39 final size:41
Alignment explanation
Indices: 75224202--75224285 Score: 136
Period size: 41 Copynumber: 2.1 Consensus size: 41
75224192 ATTTTCCCAG
75224202 GCACTTTTAATTAATCCT-AAAAAATAAAATGTTCCAGCAT
1 GCACTTTTAATTAATCCTAAAAAAATAAAATGTTCCAGCAT
*
75224242 GCAC-TTTAATTAATCCTAAAAAAAATAAAATGTTTCAGCAT
1 GCACTTTTAATTAATCCT-AAAAAAATAAAATGTTCCAGCAT
75224283 GCA
1 GCA
75224286 AACATAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
39 13 0.32
40 4 0.10
41 24 0.59
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (41 bp):
GCACTTTTAATTAATCCTAAAAAAATAAAATGTTCCAGCAT
Found at i:75226827 original size:393 final size:393
Alignment explanation
Indices: 75226102--75226886 Score: 1543
Period size: 393 Copynumber: 2.0 Consensus size: 393
75226092 AAGACCAACT
*
75226102 ACGATGGAACTATATAATTTTCTCCCAATTTGTCTTCTCTGGCGTACATCATTAAAGAAGTTTAA
1 ACGATGGAACTATATAATTTTCTCCCAATTTGTCTTCTCCGGCGTACATCATTAAAGAAGTTTAA
75226167 AGCATCAGAAATTCTATCATTCTTTAGGTAACTATGCAACATAAAGATGTCAGATCTTAAGGAAG
66 AGCATCAGAAATTCTATCATTCTTTAGGTAACTATGCAACATAAAGATGTCAGATCTTAAGGAAG
75226232 GTTTAATCCCACTTCTTAGCATCATCTCAAACATTTCTCTTGCTAATTCAGGCTTTTTGGCATGA
131 GTTTAATCCCACTTCTTAGCATCATCTCAAACATTTCTCTTGCTAATTCAGGCTTTTTGGCATGA
75226297 CCAGCTCCAGCAATGAAGAAGTTAAAGATATGAGAGCTTGGTTCAAAATGAGACAACTGCATCTC
196 CCAGCTCCAGCAATGAAGAAGTTAAAGATATGAGAGCTTGGTTCAAAATGAGACAACTGCATCTC
*
75226362 TAGCAATTTGAAAAACTGGTTTTCCAGGTTTTGCATATCGCACAGGCAACAGATAACATATCTAA
261 TAGCAATTTGAAAAACTGGTTTTCCAGGCTTTGCATATCGCACAGGCAACAGATAACATATCTAA
75226427 ACAATTTTCTGATTGGTTTATGACCCTTCTCCTGCATTTCAAGTAGAAGTGCTGCAGCAATATCT
326 ACAATTTTCTGATTGGTTTATGACCCTTCTCCTGCATTTCAAGTAGAAGTGCTGCAGCAATATCT
75226492 CCG
391 CCG
*
75226495 ACGATGGAACTATATAATTTTCTCCCTATTTGTCTTCTCCGGCGTACATCATTAAAGAAGTTTAA
1 ACGATGGAACTATATAATTTTCTCCCAATTTGTCTTCTCCGGCGTACATCATTAAAGAAGTTTAA
75226560 AGCATCAGAAATTCTATCATTCTTTAGGTAACTATGCAACATAAAGATGTCAGATCTTAAGGAAG
66 AGCATCAGAAATTCTATCATTCTTTAGGTAACTATGCAACATAAAGATGTCAGATCTTAAGGAAG
75226625 GTTTAATCCCACTTCTTAGCATCATCTCAAACATTTCTCTTGCTAATTCAGGCTTTTTGGCATGA
131 GTTTAATCCCACTTCTTAGCATCATCTCAAACATTTCTCTTGCTAATTCAGGCTTTTTGGCATGA
75226690 CCAGCTCCAGCAATGAAGAAGTTAAAGATATGAGAGCTTGGTTCAAAATGAGACAACTGCATCTC
196 CCAGCTCCAGCAATGAAGAAGTTAAAGATATGAGAGCTTGGTTCAAAATGAGACAACTGCATCTC
75226755 TAGCAATTTGAAAAACTGGTTTTCCAGGCTTTGCATATCGCACAGGCAACAGATAACATATCTAA
261 TAGCAATTTGAAAAACTGGTTTTCCAGGCTTTGCATATCGCACAGGCAACAGATAACATATCTAA
75226820 ACAATTTTCTGATTGGTTTATGACCCTTCTCCTGCATTTCAAGTAGAAGTGCTGCAGCAATATCT
326 ACAATTTTCTGATTGGTTTATGACCCTTCTCCTGCATTTCAAGTAGAAGTGCTGCAGCAATATCT
75226885 CC
391 CC
75226887 CCTATTTGAC
Statistics
Matches: 389, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
393 389 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32
Consensus pattern (393 bp):
ACGATGGAACTATATAATTTTCTCCCAATTTGTCTTCTCCGGCGTACATCATTAAAGAAGTTTAA
AGCATCAGAAATTCTATCATTCTTTAGGTAACTATGCAACATAAAGATGTCAGATCTTAAGGAAG
GTTTAATCCCACTTCTTAGCATCATCTCAAACATTTCTCTTGCTAATTCAGGCTTTTTGGCATGA
CCAGCTCCAGCAATGAAGAAGTTAAAGATATGAGAGCTTGGTTCAAAATGAGACAACTGCATCTC
TAGCAATTTGAAAAACTGGTTTTCCAGGCTTTGCATATCGCACAGGCAACAGATAACATATCTAA
ACAATTTTCTGATTGGTTTATGACCCTTCTCCTGCATTTCAAGTAGAAGTGCTGCAGCAATATCT
CCG
Found at i:75228849 original size:15 final size:15
Alignment explanation
Indices: 75228829--75228859 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
75228819 TGGAGCCAGC
75228829 AGGATTATCTAATAT
1 AGGATTATCTAATAT
75228844 AGGATTATCTAATAT
1 AGGATTATCTAATAT
75228859 A
1 A
75228860 CTCGTTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (15 bp):
AGGATTATCTAATAT
Found at i:75234643 original size:42 final size:40
Alignment explanation
Indices: 75234596--75234711 Score: 99
Period size: 42 Copynumber: 2.8 Consensus size: 40
75234586 TGATATCGTT
* *
75234596 TAAGACC-TGTCTGGGACATCACATCGATTTGAGGTTTACGCG
1 TAAGACCATGTCTGGGACATCACATCGATAT-A-ATTT-CGCG
* * * *
75234638 TAAGACCATGTTTAGGACATTAGCATCGTATATAATTTCGTG
1 TAAGACCATGTCTGGGACATCA-CATCG-ATATAATTTCGCG
* *
75234680 TAAGACCTTGTCTGGGACAATGACATCGATAT
1 TAAGACCATGTCTGGGAC-ATCACATCGATAT
75234712 TTGATAACAT
Statistics
Matches: 60, Mismatches: 10, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
41 4 0.07
42 30 0.50
43 17 0.28
44 6 0.10
45 3 0.05
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (40 bp):
TAAGACCATGTCTGGGACATCACATCGATATAATTTCGCG
Found at i:75239307 original size:40 final size:40
Alignment explanation
Indices: 75239270--75239495 Score: 321
Period size: 40 Copynumber: 5.7 Consensus size: 40
75239260 GCTACTCGTT
* *
75239270 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
75239310 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
75239350 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
75239390 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
75239430 CAAATGCCTTCGGGTCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
*
75239471 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75239496 CATCATTCAA
Statistics
Matches: 171, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
40 161 0.94
41 10 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75241953 original size:25 final size:25
Alignment explanation
Indices: 75241922--75241991 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
75241912 GCTCTCTCTC
*
75241922 GAGCCATATAATGAGAAGCTTATAT
1 GAGCCATATAACGAGAAGCTTATAT
* *
75241947 GAGCCATGTAACGGGAAGCTTATCAT
1 GAGCCATATAACGAGAAGCTTAT-AT
** *
75241973 G-GCTGTATAACGGGAAGCT
1 GAGCCATATAACGAGAAGCT
75241992 CGTAAGAGCC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 35 0.92
26 3 0.08
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (25 bp):
GAGCCATATAACGAGAAGCTTATAT
Found at i:75242136 original size:26 final size:26
Alignment explanation
Indices: 75241978--75242137 Score: 81
Period size: 26 Copynumber: 6.4 Consensus size: 26
75241968 ATCATGGCTG
75241978 TATAACGGGAAGCT--CGTAAGAGCCA
1 TATAACGGGAAGCTCACG-AAGAGCCA
* * *
75242003 TAATTA--GGAAGCTCATG-CGAGCCA
1 T-ATAACGGGAAGCTCACGAAGAGCCA
* *
75242027 -ATAACGGGTAGTTC-CGAAGAGCCA
1 TATAACGGGAAGCTCACGAAGAGCCA
***
75242051 T-TAATCGGGAAGCTTTGGAA-AGCCA
1 TATAA-CGGGAAGCTCACGAAGAGCCA
** **
75242076 T-TAATCAAGAAGCTCATAAAGAGCC-
1 TATAA-CGGGAAGCTCACGAAGAGCCA
*
75242101 TTTAATCGGGAAGCTCACGAAGAGCCA
1 TATAA-CGGGAAGCTCACGAAGAGCCA
75242128 TATAACGGGA
1 TATAACGGGA
75242138 CACTCATAAG
Statistics
Matches: 100, Mismatches: 23, Indels: 23
0.68 0.16 0.16
Matches are distributed among these distances:
22 3 0.03
23 1 0.01
24 28 0.28
25 28 0.28
26 36 0.36
27 4 0.04
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (26 bp):
TATAACGGGAAGCTCACGAAGAGCCA
Found at i:75242228 original size:24 final size:23
Alignment explanation
Indices: 75242201--75242266 Score: 60
Period size: 25 Copynumber: 2.7 Consensus size: 23
75242191 GGATGCTCCA
75242201 AAGAGCTATTAACGGGAAGCTCG
1 AAGAGCTATTAACGGGAAGCTCG
* * **
75242224 CAAGAACCATATATTGGGAAGCTCG
1 -AAGAGCTAT-TAACGGGAAGCTCG
*
75242249 AGAGGGCTATTAACGGGA
1 A-AGAGCTATTAACGGGA
75242267 TGCTTTTTCA
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
24 14 0.45
25 17 0.55
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.18
Consensus pattern (23 bp):
AAGAGCTATTAACGGGAAGCTCG
Found at i:75256494 original size:28 final size:27
Alignment explanation
Indices: 75256431--75256582 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
75256421 ATATTAAGTC
* *
75256431 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
75256458 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
75256486 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
75256513 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
75256541 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
75256568 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75256583 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:75256515 original size:55 final size:55
Alignment explanation
Indices: 75256431--75256607 Score: 264
Period size: 55 Copynumber: 3.2 Consensus size: 55
75256421 ATATTAAGTC
* * *
75256431 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
75256486 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
75256541 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
75256597 CGCACACTTAG
1 CGCACACTTAG
75256608 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
55 95 0.86
56 16 0.14
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:75260441 original size:29 final size:28
Alignment explanation
Indices: 75260341--75260455 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
75260331 TACTTGTATC
* * *
75260341 TGGCCCATTAAGCCCAATCATATTCATG
1 TGGCCCATTAGGCCCAATCACATTCATA
* *
75260369 TGGCCCATTAGGCCAAAATCACCTGT-ATA
1 TGGCCCATTAGGCC-CAATCACAT-TCATA
*
75260398 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
75260427 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
75260455 T
1 T
75260456 TCATGCTCAC
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
28 26 0.36
29 46 0.63
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:75263937 original size:48 final size:48
Alignment explanation
Indices: 75263702--75263945 Score: 389
Period size: 48 Copynumber: 5.1 Consensus size: 48
75263692 CACAAGATAA
* * *
75263702 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* * * *
75263750 AGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* * *
75263798 AGATATGCATACGTGGTAAAGCCGAATGGATAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
75263846 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
*
75263894 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
75263942 AGAT
1 AGAT
75263946 GTGTGTATAT
Statistics
Matches: 184, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 184 1.00
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
Found at i:75264188 original size:37 final size:38
Alignment explanation
Indices: 75264089--75264193 Score: 160
Period size: 37 Copynumber: 2.8 Consensus size: 38
75264079 AATATATTTT
*
75264089 GGGTAAGACCCGATGACTACGTGTGAAGA-TTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGACTTATGTCC
75264126 GGGTAAGACCCGATGACTACGTGTGGAGACTT-TGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGACTTATGTCC
* * *
75264163 GGGTAAGACTCGATAACTACGTGTGGGGACT
1 GGGTAAGACCCGATGACTACGTGTGGAGACT
75264194 ATTCGAGCTA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
37 61 0.97
38 2 0.03
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (38 bp):
GGGTAAGACCCGATGACTACGTGTGGAGACTTATGTCC
Found at i:75267920 original size:27 final size:27
Alignment explanation
Indices: 75267890--75267997 Score: 146
Period size: 27 Copynumber: 4.0 Consensus size: 27
75267880 TCCCTTATTA
*
75267890 CAGAATATGCCACAAAGGCTATTCATT
1 CAGAATACGCCACAAAGGCTATTCATT
* *
75267917 CAGAGTACGCCATAAAGGCTATTCATT
1 CAGAATACGCCACAAAGGCTATTCATT
*
75267944 CA-AAGTACGCCATAAAGGCTATTCATT
1 CAGAA-TACGCCACAAAGGCTATTCATT
* *
75267971 CAGAGTACGCCACAAAGGTTATTCATT
1 CAGAATACGCCACAAAGGCTATTCATT
75267998 GTTATCATGG
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 1 0.01
27 70 0.97
28 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (27 bp):
CAGAATACGCCACAAAGGCTATTCATT
Found at i:75270167 original size:42 final size:42
Alignment explanation
Indices: 75270107--75270438 Score: 342
Period size: 42 Copynumber: 7.6 Consensus size: 42
75270097 GAATTCCAAA
* * ** *
75270107 GCCATGTCCCAGACATGGTCTTACATG-GGTCTACATATCGAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCT-CATATCAAT
* * *
75270149 GCCATATCCCAGATATGGTCTTATATGAAATCTCAAGTCGGTGTCGAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCTC-A-----TATCAAT
* * * * ** *
75270197 GCCATGTCCCAAACATGGTCTTACACGGGACCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
75270239 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
75270281 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
*
75270323 GCCATATCCCAGATATGGTATTACATGAAATCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
* * * * * *
75270365 GCCATATCCCATATATGGTATTATATGAAATCACATACCGAGGCCGAC
1 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATC-A-----AT
75270413 GCCATATCCCAGATATGGTCTTACAT
1 GCCATATCCCAGATATGGTCTTACAT
75270439 TGGCACACAT
Statistics
Matches: 245, Mismatches: 32, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
42 183 0.75
43 5 0.02
47 1 0.00
48 56 0.23
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
Found at i:75270260 original size:90 final size:85
Alignment explanation
Indices: 75270107--75270485 Score: 350
Period size: 84 Copynumber: 4.3 Consensus size: 85
75270097 GAATTCCAAA
*
75270107 GCCATGTCCCAGACATGGTCTTACATGGG-TCTACATATCGATGCCATATCCCAGATATGGTCTT
1 GCCATGTCCCAGACATGGTCTTACATGGGATCT-CATATCAATGCCATATCCCAGATATGGTCTT
* * *
75270171 ATATGAAATCTCAAGTCGGTGTCGAT
65 ACATGAAATCTCAA-----TATCAAT
* * *
75270197 GCCATGTCCCAAACATGGTCTTACACGGGACCTCATATCAATGCCATATCCCAGATATGGTCTTA
1 GCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCAATGCCATATCCCAGATATGGTCTTA
75270262 CATGAAATCTC-ATATCAAT
66 CATGAAATCTCAATATCAAT
* * ** *
75270281 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAATGCCATATCCCAGATATGGTATTA
1 GCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCAATGCCATATCCCAGATATGGTCTTA
75270346 CATGAAATCTC-ATATCAAT
66 CATGAAATCTCAATATCAAT
* * * * * ** * * *
75270365 GCCATATCCCATATATGGTATTATATGAAATCACATACCGAGGCCGACGCCATATCCCAGATATG
1 GCCATGTCCCAGACATGGTCTTACATGGGATCTCATATC-A-----ATGCCATATCCCAGATATG
* * *
75270430 GTCTTACATTGGCACACATATCAATGTCGAT
60 GTCTTACA-T-G-A-A-ATCTCAATATCAAT
*
75270461 GTCATGTCCCAGACATGGTCTTACA
1 GCCATGTCCCAGACATGGTCTTACA
75270486 CTGGCTATCA
Statistics
Matches: 245, Mismatches: 31, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
84 115 0.47
85 1 0.00
89 1 0.00
90 93 0.38
91 3 0.01
92 1 0.00
93 1 0.00
94 1 0.00
95 4 0.02
96 25 0.10
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (85 bp):
GCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCAATGCCATATCCCAGATATGGTCTTA
CATGAAATCTCAATATCAAT
Found at i:75270448 original size:48 final size:48
Alignment explanation
Indices: 75270365--75270538 Score: 111
Period size: 48 Copynumber: 3.6 Consensus size: 48
75270355 TCATATCAAT
* * * ** *
75270365 GCCATATCCCATATATGGTATTATATGAAATCACATACCGAGGCCGAC
1 GCCATATCCCAGATATGGTCTTACATGGCATCACATACCAAGGCCGAC
* * * *
75270413 GCCATATCCCAGATATGGTCTTACATTGGCA-CACATATCAATGTCGAT
1 GCCATATCCCAGATATGGTCTTACA-TGGCATCACATACCAAGGCCGAC
* * * * * ** *
75270461 GTCATGTCCCAGACATGGTCTTACACTGGC-T-ATCATATCAACGTTGAT
1 GCCATATCCCAGATATGGTCTTACA-TGGCATCA-CATACCAAGGCCGAC
* *
75270509 GCCATGTCCCAGACATGGTCTTACACTGGC
1 GCCATATCCCAGATATGGTCTTACA-TGGC
75270539 TCTCATTAAT
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
47 1 0.01
48 102 0.96
49 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (48 bp):
GCCATATCCCAGATATGGTCTTACATGGCATCACATACCAAGGCCGAC
Found at i:75270539 original size:48 final size:48
Alignment explanation
Indices: 75270413--75270544 Score: 176
Period size: 48 Copynumber: 2.8 Consensus size: 48
75270403 CGAGGCCGAC
* * * * *
75270413 GCCATATCCCAGATATGGTCTTACATTGGC-ACACATATCAATGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATATCAACGTCGAT
* *
75270461 GTCATGTCCCAGACATGGTCTTACACTGGCTATCATATCAACGTTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTATCATATCAACGTCGAT
*
75270509 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTATCAT
75270545 TAATCATGGT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
48 73 0.99
49 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTATCATATCAACGTCGAT
Found at i:75285658 original size:28 final size:29
Alignment explanation
Indices: 75285564--75285662 Score: 128
Period size: 29 Copynumber: 3.4 Consensus size: 29
75285554 ATGTTACTGA
*
75285564 GCCTAACGGGCCATATAAATGTGATTTGG
1 GCCTAATGGGCCATATAAATGTGATTTGG
* * * *
75285593 GCCCAATGGGCTATATACAGGTGATTTGG
1 GCCTAATGGGCCATATAAATGTGATTTGG
*
75285622 GCCTAATGGGCCATATAAATATGA-TTGG
1 GCCTAATGGGCCATATAAATGTGATTTGG
*
75285650 GCTTAATGGGCCA
1 GCCTAATGGGCCA
75285663 GATACAGGTA
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
28 16 0.27
29 43 0.73
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (29 bp):
GCCTAATGGGCCATATAAATGTGATTTGG
Found at i:75286729 original size:16 final size:19
Alignment explanation
Indices: 75286695--75286734 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
75286685 TAAGGAGTTT
*
75286695 GTTTTTTTGTTAATTAA-G
1 GTTTTTTTGTTAATGAAGG
75286713 GTTTTTTT-TTAA-GAAGG
1 GTTTTTTTGTTAATGAAGG
75286730 GTTTT
1 GTTTT
75286735 CAATGAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 2 0.10
17 10 0.50
18 8 0.40
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (19 bp):
GTTTTTTTGTTAATGAAGG
Found at i:75289485 original size:25 final size:26
Alignment explanation
Indices: 75289457--75289517 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 26
75289447 TTTTCGGTTT
*
75289457 TGATTTAG-GAGTTGATCGTGGTTAG
1 TGATTTAGAGAGTTGATCGCGGTTAG
*
75289482 TGATTTAAGAAAGGGTTGATCGCGGTTAG
1 TGATTT-AG--AGAGTTGATCGCGGTTAG
75289511 TGATTTA
1 TGATTTA
75289518 AGAAAGGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
25 6 0.20
26 2 0.07
28 1 0.03
29 21 0.70
ACGTcount: A:0.25, C:0.05, G:0.33, T:0.38
Consensus pattern (26 bp):
TGATTTAGAGAGTTGATCGCGGTTAG
Found at i:75289509 original size:29 final size:29
Alignment explanation
Indices: 75289467--75289533 Score: 125
Period size: 29 Copynumber: 2.3 Consensus size: 29
75289457 TGATTTAGGA
*
75289467 GTTGATCGTGGTTAGTGATTTAAGAAAGG
1 GTTGATCGCGGTTAGTGATTTAAGAAAGG
75289496 GTTGATCGCGGTTAGTGATTTAAGAAAGG
1 GTTGATCGCGGTTAGTGATTTAAGAAAGG
75289525 GTTGATCGC
1 GTTGATCGC
75289534 ACAAGGTAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.25, C:0.07, G:0.34, T:0.33
Consensus pattern (29 bp):
GTTGATCGCGGTTAGTGATTTAAGAAAGG
Found at i:75289978 original size:29 final size:29
Alignment explanation
Indices: 75289935--75290029 Score: 129
Period size: 29 Copynumber: 3.3 Consensus size: 29
75289925 CATGATTATG
* *
75289935 AATGTGA-CTGGGCCTAACGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
75289963 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
* * *
75289992 TAGGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATA
*
75290021 AATATGATT
1 AATGTGATT
75290030 CAGCTTAATG
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 7 0.12
29 51 0.88
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATA
Found at i:75290015 original size:58 final size:57
Alignment explanation
Indices: 75289943--75290053 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
75289933 TGAATGTGAC
* ** *
75289943 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTCAGCCTAATGGGCCAGATATAGGTGATT
* * *
75290001 TGGGCCTAATGGGCCATATGAATATGATTCAGCTTAATGGGCCAGATATAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTCAGCCTAATGGGCCAGATATAGGT
75290054 ATGTGAAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTCAGCCTAATGGGCCAGATATAGGTGATT
Found at i:75291028 original size:21 final size:21
Alignment explanation
Indices: 75291002--75291047 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
75290992 TACATATAAA
* *
75291002 TAAAAACTTATAATTATTTTT
1 TAAAAACTTATAATGAATTTT
* *
75291023 TAAAAATTTATTATGAATTTT
1 TAAAAACTTATAATGAATTTT
75291044 TAAA
1 TAAA
75291048 GTCAGAACAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
TAAAAACTTATAATGAATTTT
Found at i:75292058 original size:46 final size:43
Alignment explanation
Indices: 75291915--75292050 Score: 132
Period size: 47 Copynumber: 3.0 Consensus size: 43
75291905 CCCGCCCCTA
75291915 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * *
75291962 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATT
75292008 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
75292051 CCTAGTGACA
Statistics
Matches: 75, Mismatches: 8, Indels: 14
0.77 0.08 0.14
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 29 0.39
47 30 0.40
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:75292496 original size:30 final size:30
Alignment explanation
Indices: 75292462--75292521 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
75292452 ATTTAATACG
75292462 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
75292492 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
75292522 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:75304057 original size:39 final size:39
Alignment explanation
Indices: 75304014--75304133 Score: 168
Period size: 39 Copynumber: 3.1 Consensus size: 39
75304004 CTGGACATAT
* * * * *
75304014 TTCCAGCACGTAACCTGTGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
* * *
75304053 TTCCAGCACATAGCCTACGGACCCCAAGTCCAGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
75304092 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
75304131 TTC
1 TTC
75304134 ACTGAATGTC
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.23
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:75319667 original size:27 final size:27
Alignment explanation
Indices: 75319632--75319711 Score: 99
Period size: 26 Copynumber: 3.0 Consensus size: 27
75319622 GGTGACCACA
*
75319632 TAGAGTATGCCAAAAAGGTTATTCATT
1 TAGATTATGCCAAAAAGGTTATTCATT
* *
75319659 TAGATTATGCC-AAAATGCTATTCATT
1 TAGATTATGCCAAAAAGGTTATTCATT
* * *
75319685 TAGATTACGCCACAAAGGTAATTCATT
1 TAGATTATGCCAAAAAGGTTATTCATT
75319712 GTTGTTGTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 23 0.52
27 21 0.48
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (27 bp):
TAGATTATGCCAAAAAGGTTATTCATT
Found at i:75323936 original size:17 final size:17
Alignment explanation
Indices: 75323897--75323939 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
75323887 ATATGATTGT
**
75323897 ATTGA-ATTTGATGTTA
1 ATTGACATTTGATGGAA
*
75323913 ATGGACATTTGATGGAA
1 ATTGACATTTGATGGAA
75323930 ATTGACATTT
1 ATTGACATTT
75323940 TAAATGAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.42
Consensus pattern (17 bp):
ATTGACATTTGATGGAA
Found at i:75327429 original size:25 final size:25
Alignment explanation
Indices: 75327390--75327438 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
75327380 TGATAAAACT
*
75327390 CGAGTTCTGAAGTTAATTAGGATCC
1 CGAGTTATGAAGTTAATTAGGATCC
*
75327415 CGAGTTATGAGGTTAATTAGGATC
1 CGAGTTATGAAGTTAATTAGGATC
75327439 ACTAAAGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.33
Consensus pattern (25 bp):
CGAGTTATGAAGTTAATTAGGATCC
Found at i:75333586 original size:45 final size:48
Alignment explanation
Indices: 75333499--75333591 Score: 138
Period size: 45 Copynumber: 2.0 Consensus size: 48
75333489 GATACTAGGG
* *
75333499 AATCTCGCACCCTAAGTGCCAATATATATAGCCGAAGTTATCTCAATA
1 AATCTCGCACCCTAAGTGCCAATATACATAGCCGAAGCTATCTCAATA
*
75333547 AATCTTGCA-CCTAAGTGCC-A-ATACATAGCCGAAGCTATCTCAATA
1 AATCTCGCACCCTAAGTGCCAATATACATAGCCGAAGCTATCTCAATA
75333592 TCATATCTCA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
45 23 0.55
46 1 0.02
47 10 0.24
48 8 0.19
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (48 bp):
AATCTCGCACCCTAAGTGCCAATATACATAGCCGAAGCTATCTCAATA
Found at i:75335485 original size:62 final size:60
Alignment explanation
Indices: 75335407--75335551 Score: 159
Period size: 61 Copynumber: 2.4 Consensus size: 60
75335397 TCAAGCTTTA
* * * *
75335407 CTGGGCCTAAGCCCTATT-CAGAAATCAGTG-TTAATTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCCT-AGCCCTATTACA-AAATCAGAGCAT-ACTGGGCC-TAGCCCATATCAATATCAAT
* * *
75335469 CTGGGCCATAGCCCTATTACAATATCAGAGCATACTGGGCCTAGCCCATATCAGTATCAGT
1 CTGGGCC-TAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAATATCAAT
75335530 CTGGGCCGTAGCCCTATTACAA
1 CTGGGCC-TAGCCCTATTACAA
75335552 GTCGAGATAT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
61 38 0.53
62 30 0.42
63 4 0.06
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (60 bp):
CTGGGCCTAGCCCTATTACAAAATCAGAGCATACTGGGCCTAGCCCATATCAATATCAAT
Found at i:75338904 original size:40 final size:40
Alignment explanation
Indices: 75338827--75339088 Score: 393
Period size: 40 Copynumber: 6.6 Consensus size: 40
75338817 AAACCAAGTA
* * *
75338827 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
75338866 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
75338906 CCTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
75338946 CCTTCGGGACTTAGCCCAGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
75338986 CCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
75339026 CCTTCGGGACTTAGCCCGGATATAGTAACTGGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
75339066 CCTTCGGGACTTAGCCCGATTAT
1 CCTTCGGGACTTAGCCCGGTTAT
75339089 CATCCGAATA
Statistics
Matches: 204, Mismatches: 17, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 15 0.07
40 189 0.93
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:75346462 original size:40 final size:40
Alignment explanation
Indices: 75346418--75346685 Score: 423
Period size: 40 Copynumber: 6.7 Consensus size: 40
75346408 GCTACTTGCT
*
75346418 CAAATGCCTTCGGGACTTAGCCCGGTTATAGCAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
75346458 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
75346498 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
75346538 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
75346578 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
75346618 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
75346657 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
75346686 CATCCGAATA
Statistics
Matches: 209, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.00
39 34 0.16
40 173 0.83
41 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:75351114 original size:24 final size:24
Alignment explanation
Indices: 75351087--75351132 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
75351077 ATGGTATAGG
75351087 GATGATGAATTGGTACATTTTGAT
1 GATGATGAATTGGTACATTTTGAT
*
75351111 GATGATGAATTGGTATATTTTG
1 GATGATGAATTGGTACATTTTG
75351133 TGACATGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.02, G:0.26, T:0.43
Consensus pattern (24 bp):
GATGATGAATTGGTACATTTTGAT
Found at i:75351143 original size:22 final size:24
Alignment explanation
Indices: 75351091--75351143 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
75351081 TATAGGGATG
*
75351091 ATGAATTGGTACATTTTGATGATG
1 ATGAATTGGTACATTTTGATGATC
*
75351115 ATGAATTGGTATATTTTG-TGA-C
1 ATGAATTGGTACATTTTGATGATC
75351137 ATGAATT
1 ATGAATT
75351144 AGATGCTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 7 0.26
23 3 0.11
24 17 0.63
ACGTcount: A:0.30, C:0.04, G:0.23, T:0.43
Consensus pattern (24 bp):
ATGAATTGGTACATTTTGATGATC
Found at i:75352723 original size:35 final size:35
Alignment explanation
Indices: 75352677--75352747 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
75352667 TTATTTAAAC
75352677 TTCGAATTTATGGTCCCAAAACCACTGTTTCAATT
1 TTCGAATTTATGGTCCCAAAACCACTGTTTCAATT
*
75352712 TTCGAATTTATGGTCCTAAAACCACTGTTTCAATT
1 TTCGAATTTATGGTCCCAAAACCACTGTTTCAATT
75352747 T
1 T
75352748 GACTAAAAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.39
Consensus pattern (35 bp):
TTCGAATTTATGGTCCCAAAACCACTGTTTCAATT
Found at i:75354259 original size:40 final size:40
Alignment explanation
Indices: 75354204--75354284 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
75354194 TTGTTGATAG
75354204 TTTGTATAGTTCTTTTTGAAGTGTAAGCAACTTAGAAACT
1 TTTGTATAGTTCTTTTTGAAGTGTAAGCAACTTAGAAACT
*
75354244 TTTGTATAGTTCTTTTTGAAGTGTAAGCATCTTAGAAACT
1 TTTGTATAGTTCTTTTTGAAGTGTAAGCAACTTAGAAACT
75354284 T
1 T
75354285 ATGTCCAGCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.44
Consensus pattern (40 bp):
TTTGTATAGTTCTTTTTGAAGTGTAAGCAACTTAGAAACT
Found at i:75356296 original size:14 final size:15
Alignment explanation
Indices: 75356273--75356305 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
75356263 ATCAGGCACC
75356273 TTTATCTTTTT-TTT
1 TTTATCTTTTTATTT
*
75356287 TTTATTTTTTTATTT
1 TTTATCTTTTTATTT
75356302 TTTA
1 TTTA
75356306 GAACTCAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTATCTTTTTATTT
Found at i:75367636 original size:9 final size:9
Alignment explanation
Indices: 75367622--75367655 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
75367612 GTAAAAGGAG
75367622 ATTTTGTGT
1 ATTTTGTGT
75367631 ATTTTGTG-
1 ATTTTGTGT
*
75367639 GTTTTGTGT
1 ATTTTGTGT
75367648 ATTTTGTG
1 ATTTTGTG
75367656 GTTTTGTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.09, C:0.00, G:0.26, T:0.65
Consensus pattern (9 bp):
ATTTTGTGT
Found at i:75367643 original size:17 final size:17
Alignment explanation
Indices: 75367623--75367663 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
75367613 TAAAAGGAGA
75367623 TTTTGTGTATTTTGTGG
1 TTTTGTGTATTTTGTGG
75367640 TTTTGTGTATTTTGTGG
1 TTTTGTGTATTTTGTGG
75367657 TTTTGTG
1 TTTTGTG
75367664 AATTATGGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.05, C:0.00, G:0.29, T:0.66
Consensus pattern (17 bp):
TTTTGTGTATTTTGTGG
Found at i:75375049 original size:25 final size:24
Alignment explanation
Indices: 75375015--75375098 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 24
75375005 TAGATCATAT
*
75375015 GAGCTAACCGATTTGTAGCTCGTGA
1 GAGCTTACCGATTT-TAGCTCGTGA
*
75375040 GAGCTTACCGATTCTCAGCTCGT-A
1 GAGCTTACCGATT-TTAGCTCGTGA
*
75375064 TGAGCTTATCGATTTATAGCTCGTGA
1 -GAGCTTACCGATTT-TAGCTCGTGA
* *
75375090 AAGCATACC
1 GAGCTTACC
75375099 AATTCATAGC
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
24 2 0.04
25 44 0.92
26 2 0.04
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (24 bp):
GAGCTTACCGATTTTAGCTCGTGA
Found at i:75375087 original size:50 final size:50
Alignment explanation
Indices: 75375003--75375118 Score: 144
Period size: 50 Copynumber: 2.3 Consensus size: 50
75374993 GCGGACACAC
* * * * *
75375003 CATAGATCATATGAGCTAACCGATTTGTAGCTCGTGAGAGCTTACCGATT
1 CATAGCTCATATGAGCTAACCGATTTATAGCTCGTGAAAGCATACCAATT
* * *
75375053 C-TCAGCTCGTATGAGCTTATCGATTTATAGCTCGTGAAAGCATACCAATT
1 CAT-AGCTCATATGAGCTAACCGATTTATAGCTCGTGAAAGCATACCAATT
75375103 CATAGCTCATATGAGC
1 CATAGCTCATATGAGC
75375119 ATACATGTAC
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
49 1 0.02
50 53 0.96
51 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (50 bp):
CATAGCTCATATGAGCTAACCGATTTATAGCTCGTGAAAGCATACCAATT
Found at i:75375482 original size:22 final size:24
Alignment explanation
Indices: 75375457--75375534 Score: 79
Period size: 26 Copynumber: 3.2 Consensus size: 24
75375447 TACAAATTAA
75375457 TAAAAATT-A-ATAATGGGTTAGG
1 TAAAAATTCAGATAATGGGTTAGG
*
75375479 TAAATATTCCATGATAATGGGTTAGG
1 TAAAAATT-CA-GATAATGGGTTAGG
**
75375505 TAAATGTTCCATGATAATGGGTTAGG
1 TAAAAATT-CA-GATAATGGGTTAGG
75375531 TAAA
1 TAAA
75375535 TGTTCATGAT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
22 7 0.14
24 1 0.02
26 42 0.84
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.33
Consensus pattern (24 bp):
TAAAAATTCAGATAATGGGTTAGG
Found at i:75375495 original size:26 final size:26
Alignment explanation
Indices: 75375466--75375544 Score: 142
Period size: 26 Copynumber: 3.1 Consensus size: 26
75375456 ATAAAAATTA
*
75375466 ATAATGGGTTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
75375492 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
75375518 ATAATGGGTTAGGTAAATGTT-CATG
1 ATAATGGGTTAGGTAAATGTTCCATG
75375543 AT
1 AT
75375545 GGGCATTTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 6 0.12
26 46 0.88
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.35
Consensus pattern (26 bp):
ATAATGGGTTAGGTAAATGTTCCATG
Found at i:75377245 original size:81 final size:81
Alignment explanation
Indices: 75377110--75377323 Score: 331
Period size: 81 Copynumber: 2.6 Consensus size: 81
75377100 AGGAAGCGTC
* * *
75377110 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCT
75377175 GCCACATATATCTGTT
66 GCCACATATATCTGTT
* *
75377191 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCATGATTATCTGATCTGGTGGTTCT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCT
75377256 GCCACATATATCTGTT
66 GCCACATATATCTGTT
* * * *
75377272 CTGGTGGTTCTTCCACGATTATCTGTATCTGGTGACTCTGTCAC-ATTATCTG
1 CTGGTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACGATTATCTG
75377324 TTCTAGCAGC
Statistics
Matches: 122, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
81 107 0.88
82 15 0.12
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (81 bp):
CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCT
GCCACATATATCTGTT
Done.