Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 22 of 290
Found at i:7232376 original size:93 final size:93
Alignment explanation
Indices: 7232217--7232388 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
7232207 GGATGGTTGA
* *
7232217 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTGGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTGGAGT
*
7232282 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
7232310 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTGGAGT
7232375 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
7232389 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTGGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:7239845 original size:46 final size:46
Alignment explanation
Indices: 7239795--7240063 Score: 266
Period size: 46 Copynumber: 5.8 Consensus size: 46
7239785 TGGTTGAGCA
7239795 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7239841 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
7239886 CATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7239934 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
7239979 CATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* ** * *
7240027 CCCGGGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7240064 GCGGGTTACA
Statistics
Matches: 183, Mismatches: 22, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
42 4 0.02
43 10 0.05
45 6 0.03
46 88 0.48
47 56 0.31
48 6 0.03
50 9 0.05
51 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:7239910 original size:47 final size:47
Alignment explanation
Indices: 7239841--7240009 Score: 222
Period size: 47 Copynumber: 3.6 Consensus size: 47
7239831 GATGCGAATG
*
7239841 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTAAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* * *
7239888 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--
1 TCCGAACTCGTTAAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCA
*
7239934 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTAAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
7239981 TCCGAACTCGTTAAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTAAGTTGAGTCCGAGTTC
7240010 ACTTATGGAT
Statistics
Matches: 104, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 28 0.27
47 56 0.54
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTAAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:7239951 original size:93 final size:93
Alignment explanation
Indices: 7239792--7240056 Score: 476
Period size: 93 Copynumber: 2.8 Consensus size: 93
7239782 GGATGGTTGA
*
7239792 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
7239857 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
7239885 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
7239950 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * **
7239978 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGGGCTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
*
7240043 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
7240057 CTTATGGGCG
Statistics
Matches: 166, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 166 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:7244781 original size:25 final size:25
Alignment explanation
Indices: 7244744--7244796 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
7244734 TGGCATCTTA
* **
7244744 TTATGTATAGTAATTTTGAGTATCC
1 TTATATATAGTAATTCCGAGTATCC
*
7244769 TTATATATGGTAATTCCGAGTATCC
1 TTATATATAGTAATTCCGAGTATCC
7244794 TTA
1 TTA
7244797 GTATTCCAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.45
Consensus pattern (25 bp):
TTATATATAGTAATTCCGAGTATCC
Found at i:7274099 original size:40 final size:40
Alignment explanation
Indices: 7274044--7274532 Score: 951
Period size: 40 Copynumber: 12.2 Consensus size: 40
7274034 TATGTGCATA
*
7274044 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
7274084 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
7274124 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
7274164 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
7274204 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
7274244 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
7274284 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
7274324 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
7274364 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
7274404 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
*
7274444 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
*
7274484 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
7274524 GCATTCGTG
1 GCATTCGTG
7274533 CTGGTTGTTA
Statistics
Matches: 445, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 445 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (40 bp):
GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCAAAG
Found at i:7274724 original size:27 final size:27
Alignment explanation
Indices: 7274686--7274741 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
7274676 TATAAGTTGT
7274686 GATTATGTAATCGAATAATGCTCTCCC
1 GATTATGTAATCGAATAATGCTCTCCC
7274713 GATTATGTAATCGAATAATGCTCTCCC
1 GATTATGTAATCGAATAATGCTCTCCC
7274740 GA
1 GA
7274742 CCATTTCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (27 bp):
GATTATGTAATCGAATAATGCTCTCCC
Found at i:7280372 original size:20 final size:20
Alignment explanation
Indices: 7280329--7280372 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
7280319 GCACATGTAT
* * *
7280329 TCATAAAATTTTAGAATTTT
1 TCATAAAATTTTACAACTTG
*
7280349 TCATCAAATTTTACAACTTG
1 TCATAAAATTTTACAACTTG
7280369 TCAT
1 TCAT
7280373 TTTAGCCCCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.14, G:0.05, T:0.45
Consensus pattern (20 bp):
TCATAAAATTTTACAACTTG
Found at i:7282816 original size:21 final size:21
Alignment explanation
Indices: 7282792--7282833 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7282782 GACTTTAATG
7282792 GTATTTAACATGGCCTAATTA
1 GTATTTAACATGGCCTAATTA
*
7282813 GTATTTCACATGGCCTAATTA
1 GTATTTAACATGGCCTAATTA
7282834 TACTCTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (21 bp):
GTATTTAACATGGCCTAATTA
Found at i:7286431 original size:47 final size:46
Alignment explanation
Indices: 7286333--7286452 Score: 138
Period size: 47 Copynumber: 2.6 Consensus size: 46
7286323 GAGGCCAATT
* *
7286333 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATTTCGATGC
1 CATGTCCCAGACATGTCTTACACTAGCTCTCG-ATCAATTCCGATGC
*
7286380 CATGTCCCAGACATGGTTTTACACTAGCTCTC-AT-AATGTGGCCGATG-
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCGATCAAT-T--CCGATGC
*
7286427 CATGTCCCAAACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
7286453 TGCACAAATA
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
45 3 0.05
46 13 0.20
47 27 0.42
48 21 0.33
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGATCAATTCCGATGC
Found at i:7291805 original size:24 final size:22
Alignment explanation
Indices: 7291769--7291816 Score: 69
Period size: 24 Copynumber: 2.1 Consensus size: 22
7291759 CGCGGTCCTT
*
7291769 TCAGCAGGCGCCGGCACATTAC
1 TCAGCAGGAGCCGGCACATTAC
7291791 TCNNAGCAGGAGCCGGCACATTAC
1 TC--AGCAGGAGCCGGCACATTAC
7291815 TC
1 TC
7291817 TCCCCATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.09
24 21 0.91
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.15
Consensus pattern (22 bp):
TCAGCAGGAGCCGGCACATTAC
Found at i:7293495 original size:47 final size:48
Alignment explanation
Indices: 7293420--7293546 Score: 152
Period size: 47 Copynumber: 2.7 Consensus size: 48
7293410 GATTAAGATA
* * * * *
7293420 CCGATGCCATGTCCCAGACATGGACTTACTCTGGCTCATC-CATCAA-G
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGACT-ATCAAATCAAGG
*
7293467 TCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCGAAATCAAGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGACTATC-AAATCAAGG
*
7293516 CCGACGCCATGTCCCAAACAT-GTCTTACACT
1 CCGATGCCATGTCCCAAACATGGTCTTACACT
7293547 AGCGCACAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 3 0.04
47 31 0.45
48 15 0.22
49 20 0.29
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (48 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCAAATCAAGG
Found at i:7335311 original size:46 final size:46
Alignment explanation
Indices: 7335148--7335412 Score: 207
Period size: 46 Copynumber: 5.6 Consensus size: 46
7335138 GGGGTCAAGT
** * *
7335148 GCCGATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATGTTTG-T
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCT--CAT-CTTGAG
* * * *
7335198 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTC-TCAT-A-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-TCTCATCTTGAG
* *
7335244 GCCGGTGCATATCCCAGACATGTCTTACACTGGCT-TACATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTTGAG
* * * ** *
7335290 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTTGAG
* ** *
7335336 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAGTGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTTGAG
*
7335384 GTCGATGCATGTCCCAGACATGTCTTACA
1 GCCGATGCATGTCCCAGACATGTCTTACA
7335413 ATAGCACACA
Statistics
Matches: 174, Mismatches: 32, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 15 0.09
45 14 0.08
46 56 0.32
47 29 0.17
48 23 0.13
49 1 0.01
50 32 0.18
51 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTTGAG
Found at i:7335363 original size:94 final size:92
Alignment explanation
Indices: 7335142--7335419 Score: 298
Period size: 94 Copynumber: 3.0 Consensus size: 92
7335132 AAACATGGGG
** * *
7335142 TCAAGTGCCGATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATGTTTGTGTCGATGCC
1 TCAA-TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTA-CAT-ATTGGGTCGATG-C
7335207 ATGTCCCAGACATGGTCTTACACT-GACACCTC
62 ATGTCCCAGACAT-GTCTTACACTAG-CACCTC
* * * *
7335239 TC-ATAGCCGGTG-CATATCCCAGACAT-GTCTTACACTGGCT-TACATCTTGAGGCCGATGCAT
1 TCAAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATTG-GGTCGATGCAT
* *
7335300 GTCCCAAACATGTCTTACACTAGCTCTCGTC
64 GTCCCAGACATGTCTTACACTAGCAC-C-TC
* *
7335331 TCAATGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCT-CATAGTGTGGTCGATGCATG
1 TCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATTG-GGTCGATGCATG
*
7335395 TCCCAGACATGTCTTACAATAGCAC
65 TCCCAGACATGTCTTACACTAGCAC
7335420 ACAAATAACC
Statistics
Matches: 153, Mismatches: 19, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
90 12 0.08
91 18 0.12
92 19 0.12
93 17 0.11
94 63 0.41
95 15 0.10
96 7 0.05
97 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
TCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATTGGGTCGATGCATGT
CCCAGACATGTCTTACACTAGCACCTC
Found at i:7335767 original size:34 final size:34
Alignment explanation
Indices: 7335724--7335791 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
7335714 TTAGACACTA
7335724 AATGAAATTAGGAAATCAAAATTTCACTTTTTCG
1 AATGAAATTAGGAAATCAAAATTTCACTTTTTCG
7335758 AATGAAATTAGGAAATCAAAATTTCACTTTTTCG
1 AATGAAATTAGGAAATCAAAATTTCACTTTTTCG
7335792 GTGAAATGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (34 bp):
AATGAAATTAGGAAATCAAAATTTCACTTTTTCG
Found at i:7340245 original size:47 final size:47
Alignment explanation
Indices: 7340193--7340361 Score: 214
Period size: 47 Copynumber: 3.6 Consensus size: 47
7340183 GATAATTGTG
*
7340193 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
*
7340240 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
* * * * * *
7340289 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTATATATATGTGATAAG-GCCTAATGGCCAATGTGATGA
* *
7340336 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTATATATATGTGATAAG
7340362 TCCCGAAGGG
Statistics
Matches: 107, Mismatches: 11, Indels: 7
0.86 0.09 0.06
Matches are distributed among these distances:
46 2 0.02
47 57 0.53
48 2 0.02
49 46 0.43
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
Found at i:7340253 original size:49 final size:49
Alignment explanation
Indices: 7340193--7340361 Score: 226
Period size: 49 Copynumber: 3.6 Consensus size: 49
7340183 GATAATTGTG
7340193 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
*
7340240 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
* * * * *
7340289 ATGTGAAAGTG--TATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAG-GCCTAATGGCCAATGTGATGA
7340336 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
7340362 TCCCGAAGGG
Statistics
Matches: 108, Mismatches: 8, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
46 2 0.02
47 49 0.45
48 5 0.05
49 52 0.48
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
Found at i:7340523 original size:37 final size:37
Alignment explanation
Indices: 7340480--7340558 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
7340470 CCGGGCTCTA
* * *
7340480 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
7340517 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
7340554 AAGAC
1 AAGAC
7340559 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:7345424 original size:28 final size:28
Alignment explanation
Indices: 7345348--7345471 Score: 167
Period size: 24 Copynumber: 4.8 Consensus size: 28
7345338 CGTGGTTAGA
7345348 CCATGGCAATGTGCTAAGTGAAAT-AGT
1 CCATGGCAATGTGCTAAGTGAAATAAGT
7345375 CCATGGC-A--T-CTAAGTGAAATAAGT
1 CCATGGCAATGTGCTAAGTGAAATAAGT
*
7345399 CCATGGCAATGTGCTAAGAGAAATAAGT
1 CCATGGCAATGTGCTAAGTGAAATAAGT
7345427 CCATGGC-A--T-CTAAGTGAAATAAGT
1 CCATGGCAATGTGCTAAGTGAAATAAGT
*
7345451 CCATGGCATTGTGCTAAGTGA
1 CCATGGCAATGTGCTAAGTGA
7345472 GAAATTTCCT
Statistics
Matches: 85, Mismatches: 3, Indels: 17
0.81 0.03 0.16
Matches are distributed among these distances:
23 11 0.13
24 32 0.38
25 2 0.02
26 1 0.01
27 10 0.12
28 29 0.34
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (28 bp):
CCATGGCAATGTGCTAAGTGAAATAAGT
Found at i:7345447 original size:52 final size:51
Alignment explanation
Indices: 7345348--7345468 Score: 215
Period size: 52 Copynumber: 2.4 Consensus size: 51
7345338 CGTGGTTAGA
*
7345348 CCATGGCAATGTGCTAAGTGAAATAGTCCATGGCATCTAAGTGAAATAAGT
1 CCATGGCAATGTGCTAAGAGAAATAGTCCATGGCATCTAAGTGAAATAAGT
7345399 CCATGGCAATGTGCTAAGAGAAATAAGTCCATGGCATCTAAGTGAAATAAGT
1 CCATGGCAATGTGCTAAGAGAAAT-AGTCCATGGCATCTAAGTGAAATAAGT
*
7345451 CCATGGCATTGTGCTAAG
1 CCATGGCAATGTGCTAAG
7345469 TGAGAAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
51 23 0.34
52 44 0.66
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.25
Consensus pattern (51 bp):
CCATGGCAATGTGCTAAGAGAAATAGTCCATGGCATCTAAGTGAAATAAGT
Found at i:7361279 original size:39 final size:39
Alignment explanation
Indices: 7361220--7361338 Score: 202
Period size: 39 Copynumber: 3.1 Consensus size: 39
7361210 GTGATGAAGT
* *
7361220 AGGCAAGGTTGATGACGTGCCCTTGCGACATGCACTATA
1 AGGCAAGGTCGATGACGTGCCCTTGCGACATGCACCATA
*
7361259 AGGCAAGGTCGATGATGTGCCCTTGCGACATGCACCATA
1 AGGCAAGGTCGATGACGTGCCCTTGCGACATGCACCATA
*
7361298 AGGCAAGGTCGATGACGTGCCCTTGTGACATGCACCATA
1 AGGCAAGGTCGATGACGTGCCCTTGCGACATGCACCATA
7361337 AG
1 AG
7361339 AAGTAGACGT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (39 bp):
AGGCAAGGTCGATGACGTGCCCTTGCGACATGCACCATA
Found at i:7364448 original size:44 final size:44
Alignment explanation
Indices: 7364385--7364475 Score: 164
Period size: 44 Copynumber: 2.1 Consensus size: 44
7364375 TTGTGTTAAG
*
7364385 GTGTTCAATTAGGTTAGGTTTAGTATTACTTGGTAAGCTACCTT
1 GTGTTCAATTAGGTTAGGTTCAGTATTACTTGGTAAGCTACCTT
*
7364429 GTGTTCAATTGGGTTAGGTTCAGTATTACTTGGTAAGCTACCTT
1 GTGTTCAATTAGGTTAGGTTCAGTATTACTTGGTAAGCTACCTT
7364473 GTG
1 GTG
7364476 GTCGTTCAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.21, C:0.12, G:0.25, T:0.42
Consensus pattern (44 bp):
GTGTTCAATTAGGTTAGGTTCAGTATTACTTGGTAAGCTACCTT
Found at i:7368433 original size:45 final size:42
Alignment explanation
Indices: 7368316--7368435 Score: 125
Period size: 45 Copynumber: 2.7 Consensus size: 42
7368306 ATAGCTCGTA
*
7368316 AGAGCTTACTGTTTCAGCTCATTAGAGCTTACTGTTCAGCTCAAT
1 AGAGCTTACTG-TTCAGCTCA--AGAGCTTACCGTTCAGCTCAAT
* *
7368361 AGAG-TGTACCGTTCAGCTCAATAGAGCTTACCGTTTTAGCTCAAT
1 AGAGCT-TACTGTTCAGCTC-A-AGAGCTTACCG-TTCAGCTCAAT
7368406 AGAGCTTACTGTTCAGCTCGAAGGAGCTTA
1 AGAGCTTACTGTTCAGCTC-AA-GAGCTTA
7368436 TCGAGAATGA
Statistics
Matches: 65, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
44 21 0.32
45 43 0.66
46 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (42 bp):
AGAGCTTACTGTTCAGCTCAAGAGCTTACCGTTCAGCTCAAT
Found at i:7368435 original size:22 final size:22
Alignment explanation
Indices: 7368316--7368424 Score: 148
Period size: 22 Copynumber: 4.9 Consensus size: 22
7368306 ATAGCTCGTA
*
7368316 AGAGCTTACTGTTTCAGCTCATT
1 AGAGCTTACTG-TTCAGCTCAAT
7368339 AGAGCTTACTGTTCAGCTCAAT
1 AGAGCTTACTGTTCAGCTCAAT
*
7368361 AGAG-TGTACCGTTCAGCTCAAT
1 AGAGCT-TACTGTTCAGCTCAAT
* *
7368383 AGAGCTTACCGTTTTAGCTCAAT
1 AGAGCTTACTG-TTCAGCTCAAT
7368406 AGAGCTTACTGTTCAGCTC
1 AGAGCTTACTGTTCAGCTC
7368425 GAAGGAGCTT
Statistics
Matches: 78, Mismatches: 5, Indels: 7
0.87 0.06 0.08
Matches are distributed among these distances:
21 1 0.01
22 45 0.58
23 32 0.41
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (22 bp):
AGAGCTTACTGTTCAGCTCAAT
Found at i:7375942 original size:22 final size:22
Alignment explanation
Indices: 7375917--7375990 Score: 96
Period size: 22 Copynumber: 3.4 Consensus size: 22
7375907 TAGCTCATTG
*
7375917 GAGCTTACCATTCAGCTTAATA
1 GAGCTTACCGTTCAGCTTAATA
* *
7375939 GAGCTTATCGTTCAGCTCAATA
1 GAGCTTACCGTTCAGCTTAATA
*
7375961 GAGCTTACTGTTCAGCTTGAA-A
1 GAGCTTACCGTTCAGCTT-AATA
7375983 GAGCTTAC
1 GAGCTTAC
7375991 AGAGCATGAC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
22 43 0.96
23 2 0.04
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (22 bp):
GAGCTTACCGTTCAGCTTAATA
Found at i:7376011 original size:24 final size:24
Alignment explanation
Indices: 7375979--7376034 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
7375969 TGTTCAGCTT
7375979 GAAAGAGCTTACAGAGCATGACTC
1 GAAAGAGCTTACAGAGCATGACTC
* *
7376003 GAAATAGCTTACCGAGCATGACTC
1 GAAAGAGCTTACAGAGCATGACTC
7376027 GAAAGAGC
1 GAAAGAGC
7376035 ATGTATGGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.16
Consensus pattern (24 bp):
GAAAGAGCTTACAGAGCATGACTC
Found at i:7378688 original size:39 final size:39
Alignment explanation
Indices: 7378645--7378722 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
7378635 GGAGCAAATC
*
7378645 GGAAGAGATCCAAAAACTGAGATTCGATACCTATTCCTA
1 GGAAGAGATCCAAAAACTAAGATTCGATACCTATTCCTA
*
7378684 GGAAGAGATCCAAAGACTAAGATTCGATACCTATTCCTA
1 GGAAGAGATCCAAAAACTAAGATTCGATACCTATTCCTA
7378723 CCCAAGACCG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (39 bp):
GGAAGAGATCCAAAAACTAAGATTCGATACCTATTCCTA
Found at i:7379581 original size:16 final size:16
Alignment explanation
Indices: 7379556--7379587 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7379546 AAATTTGAGA
*
7379556 TTTCGGGATTTTTGGG
1 TTTCGAGATTTTTGGG
7379572 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
7379588 GCATTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:7395191 original size:56 final size:57
Alignment explanation
Indices: 7395129--7395239 Score: 145
Period size: 56 Copynumber: 2.0 Consensus size: 57
7395119 CCAATATATA
* * * * *
7395129 TGGCCCACTAAGCCC-AATCTCTTTCATATGGCCCATTAGGCCC-AATCACATTTATG
1 TGGCCCACTAAGCCCAAATCACATTCATAT-GACCACTAAGCCCAAATCACATTTATG
*
7395185 TGGCCCATTAAGCCCAAATCACATTCATATGACCACTAAGCCCAAATCACATTTA
1 TGGCCCACTAAGCCCAAATCACATTCATATGACCACTAAGCCCAAATCACATTTA
7395240 CAGTCATGCT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 24 0.51
57 23 0.49
ACGTcount: A:0.31, C:0.32, G:0.12, T:0.26
Consensus pattern (57 bp):
TGGCCCACTAAGCCCAAATCACATTCATATGACCACTAAGCCCAAATCACATTTATG
Found at i:7395235 original size:28 final size:28
Alignment explanation
Indices: 7395126--7395237 Score: 127
Period size: 28 Copynumber: 4.0 Consensus size: 28
7395116 TTACCAATAT
* *
7395126 ATATGGCCCACTAAGCCCAATCTCTTTC
1 ATATGGCCCACTAAGCCCAATCACATTC
* * *
7395154 ATATGGCCCATTAGGCCCAATCACATTT
1 ATATGGCCCACTAAGCCCAATCACATTC
* *
7395182 ATGTGGCCCATTAAGCCCAAATCACATTC
1 ATATGGCCCACTAAGCCC-AATCACATTC
*
7395211 ATAT-GACCACTAAGCCCAAATCACATT
1 ATATGGCCCACTAAGCCC-AATCACATT
7395238 TACAGTCATG
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 60 0.83
29 12 0.17
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (28 bp):
ATATGGCCCACTAAGCCCAATCACATTC
Found at i:7409121 original size:24 final size:24
Alignment explanation
Indices: 7409092--7409140 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
7409082 CTCTTAAAGG
7409092 TATGAATAAATGTTATATTTAAAT
1 TATGAATAAATGTTATATTTAAAT
7409116 TATGAATAAATGTTATATTTAAAT
1 TATGAATAAATGTTATATTTAAAT
7409140 T
1 T
7409141 TATGTGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (24 bp):
TATGAATAAATGTTATATTTAAAT
Found at i:7409880 original size:23 final size:23
Alignment explanation
Indices: 7409837--7409925 Score: 96
Period size: 23 Copynumber: 4.0 Consensus size: 23
7409827 CTTTGTCAAT
7409837 CAGGCACTTTATGTGAT-GTATAC
1 CAGGCACTTTATGTG-TCGTATAC
**
7409860 CAGGCACTTTATGTGTCGTATTT
1 CAGGCACTTTATGTGTCGTATAC
* **
7409883 CAGGCACCTCGTGTGTCGTAT--
1 CAGGCACTTTATGTGTCGTATAC
7409904 CAGGCAC-TTATGTGTCGTATAC
1 CAGGCACTTTATGTGTCGTATAC
7409926 TGATCAGGTA
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
20 11 0.20
21 7 0.12
22 1 0.02
23 37 0.66
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.35
Consensus pattern (23 bp):
CAGGCACTTTATGTGTCGTATAC
Found at i:7410121 original size:18 final size:19
Alignment explanation
Indices: 7410098--7410136 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
7410088 TGGAATTATG
*
7410098 AATTGAAATGTGA-ATTGA
1 AATTGAAATATGAGATTGA
*
7410116 AATTGAGATATGAGATTGA
1 AATTGAAATATGAGATTGA
7410135 AA
1 AA
7410137 GCTTGAATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (19 bp):
AATTGAAATATGAGATTGA
Found at i:7411718 original size:55 final size:55
Alignment explanation
Indices: 7411658--7411768 Score: 150
Period size: 55 Copynumber: 2.0 Consensus size: 55
7411648 TCCACTATCA
* *
7411658 AGGTACCATAAGTTTATATTTGTGTTATTCACCTTGAAGCAATGCTCATTTCCCT
1 AGGTACCATAAGTTTATACTTATGTTATTCACCTTGAAGCAATGCTCATTTCCCT
* * * * * *
7411713 AGGTACCATGAGTTTGTACTTATGTTGTTCACTTTGAAGCAATGGTCCTTTCCCT
1 AGGTACCATAAGTTTATACTTATGTTATTCACCTTGAAGCAATGCTCATTTCCCT
7411768 A
1 A
7411769 CAAATATAGA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (55 bp):
AGGTACCATAAGTTTATACTTATGTTATTCACCTTGAAGCAATGCTCATTTCCCT
Found at i:7417816 original size:27 final size:27
Alignment explanation
Indices: 7417786--7417907 Score: 181
Period size: 27 Copynumber: 4.5 Consensus size: 27
7417776 AGTACTCTCA
7417786 ATTTATAGAATTACCGTTTTACCCTCG
1 ATTTATAGAATTACCGTTTTACCCTCG
* *
7417813 ATTTACAGAATTATCGTTTTACCCTCG
1 ATTTATAGAATTACCGTTTTACCCTCG
* *
7417840 ATTTATAGAATTACTGTTTTACCCTTG
1 ATTTATAGAATTACCGTTTTACCCTCG
*
7417867 ATTTATAGAATTACTGTTTTACCCTCG
1 ATTTATAGAATTACCGTTTTACCCTCG
* *
7417894 ATTTACAAAATTAC
1 ATTTATAGAATTAC
7417908 TAAAATACCC
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.43
Consensus pattern (27 bp):
ATTTATAGAATTACCGTTTTACCCTCG
Found at i:7417825 original size:54 final size:54
Alignment explanation
Indices: 7417767--7417880 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
7417757 CAAATTGTAA
*
7417767 AATTACCAAAGTACTCTCAATTTATAGAATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTACAG
* **** * * * *
7417821 AATTATCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTATAG
1 AATTACCAAAGTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTACAG
7417875 AATTAC
1 AATTAC
7417881 TGTTTTACCC
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (54 bp):
AATTACCAAAGTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTACAG
Found at i:7417916 original size:27 final size:27
Alignment explanation
Indices: 7417886--7418132 Score: 232
Period size: 27 Copynumber: 9.2 Consensus size: 27
7417876 ATTACTGTTT
** *
7417886 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * **
7417913 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
***
7417940 TACCCTCGATCAATAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * *
7417967 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
7417993 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
*
7418020 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
7418047 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * * *
7418074 TACCACT-GGTTTGTGAAATTATCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
* *
7418101 TACTCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
7418128 TACCC
1 TACCC
7418133 CTGATTTACA
Statistics
Matches: 181, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
26 24 0.13
27 155 0.86
28 2 0.01
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:7417917 original size:54 final size:55
Alignment explanation
Indices: 7417805--7417934 Score: 156
Period size: 54 Copynumber: 2.4 Consensus size: 55
7417795 ATTACCGTTT
* * * ****
7417805 TACCCTCGATTTACAGAATTA-TCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTTGATTTACAGAATTACTCGTTTTACCCTCGATTTACAAAATTACTAAAA
*
7417859 TACCCTTGATTTATAGAATTACT-GTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAGAATTACTCGTTTTACCCTCGATTTACAAAATTACTAAAA
* *
7417913 TACCCTTGGTTTACAAAATTAC
1 TACCCTTGATTTACAGAATTAC
7417935 CAAAATACCC
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 63 0.98
55 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (55 bp):
TACCCTTGATTTACAGAATTACTCGTTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:7417944 original size:54 final size:54
Alignment explanation
Indices: 7417886--7418214 Score: 222
Period size: 54 Copynumber: 6.1 Consensus size: 54
7417876 ATTACTGTTT
** * *
7417886 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAA
*** * ** * *
7417940 TACCCTCGATCAATAAAATTACCAAAATACCC-TAGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAA
* * * **
7417993 TACCC-CTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAA
* * *** * *
7418047 TACCC-CTAGTTTGTAAAATTACCAAAATACCAC-TGGTTTGTGAAATTATCGAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAATACC-CTTAGTTTACAAAATTACCAAAA
* * * *
7418101 TACTCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTACAAAGTTA-CAGAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTTAG-TTTACAAAATTACCA-AAA
* * * * * **
7418155 TACCTTTGACTTTCTAAAAATTA-TAGAAATACCATTAGTTTACAAAATTACTGAAA
1 TACCCTCGA-TTTGT-AAAATTACCA-AAATACCCTTAGTTTACAAAATTACCAAAA
7418211 TACC
1 TACC
7418215 TTTGGGTTGT
Statistics
Matches: 217, Mismatches: 45, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
52 1 0.00
53 44 0.20
54 130 0.60
55 8 0.04
56 33 0.15
57 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (54 bp):
TACCCTCGATTTGTAAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAA
Found at i:7417944 original size:81 final size:81
Alignment explanation
Indices: 7417764--7418042 Score: 213
Period size: 81 Copynumber: 3.5 Consensus size: 81
7417754 CCTCAAATTG
* * * *
7417764 TAAAATTACCAAAGTACTCTCAATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATCG
1 TAAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTA-C-
** * *
7417829 T--TTTACCCTCGATTTA
64 TAAAATACCCTTGGTTTA
* ***** * *
7417845 TAGAATTACTGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTA
1 TAAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTA
7417910 AAATACCCTTGGTTTA
66 AAATACCCTTGGTTTA
* ** * **** * * ** *
7417926 CAAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCCTAG-TCTGTAAAATTGCTA
1 TAAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTA
* *
7417990 AAATACCCCTGGTTTG
66 AAATACCCTTGGTTTA
* * *
7418006 TAAAATTACCAAAATACCCTCAATTTGTAAAATTACC
1 TAAAATTACCAAAATACCCTCGATTTATAGAATTACC
7418043 AAAATACCCC
Statistics
Matches: 153, Mismatches: 43, Indels: 5
0.76 0.21 0.02
Matches are distributed among these distances:
79 1 0.01
80 58 0.38
81 94 0.61
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTA
AAATACCCTTGGTTTA
Found at i:7418094 original size:81 final size:80
Alignment explanation
Indices: 7417900--7418134 Score: 319
Period size: 81 Copynumber: 2.9 Consensus size: 80
7417890 CTCGATTTAC
** * ***
7417900 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAATAAAATTACCAA
1 AAAATTACTAAAATACCC-TGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
7417965 AATA-CCCTAGTCTGT
65 AATACCCCTAGTCTGT
*
7417980 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
*
7418045 AATACCCCTAGTTTGT
65 AATACCCCTAGTCTGT
* * * * *
7418061 AAAATTACCAAAATACCACTGGTTTGTGAAATTATCGAAATACTCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACC-CTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
7418126 AATACCCCT
65 AATACCCCT
7418135 GATTTACAAA
Statistics
Matches: 138, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
80 60 0.43
81 78 0.57
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCCTAGTCTGT
Found at i:7418306 original size:27 final size:27
Alignment explanation
Indices: 7418276--7418363 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
7418266 ACCCCTATTA
7418276 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
* * *
7418303 GGTAAAGAGACCGTAAGGGCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
** *
7418330 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAAAGACCGTAA-AGCCCCTGTAG
7418357 GGTAAAA
1 GGTAAAA
7418364 TGACGAATAT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.18
Consensus pattern (27 bp):
GGTAAAAAGACCGTAAAGCCCCTGTAG
Found at i:7418367 original size:27 final size:27
Alignment explanation
Indices: 7418263--7418367 Score: 99
Period size: 27 Copynumber: 3.9 Consensus size: 27
7418253 AAATGACTAA
* *
7418263 AATACCCCTATTA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAATGACCGT
7418290 AA-AGCCCCTGTAGGGTAAAGA-GACCGT
1 AATA-CCCCTGTAGGGTAAA-ATGACCGT
*** *
7418317 AAGGGCCCTGTAGGGTAAAGTGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
*
7418344 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
7418368 GAATATGCCC
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
26 3 0.05
27 60 0.94
28 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:7419253 original size:56 final size:52
Alignment explanation
Indices: 7419168--7419320 Score: 186
Period size: 56 Copynumber: 2.9 Consensus size: 52
7419158 GCAGAAGTGC
**
7419168 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATCG
* * *
7419220 -AAAGGGCATAACTTATGCCTCAGTTTACCGAAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGG-----CTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATCG
*
7419276 AAAAGGGCTT-TGCCCCAGTTTACCGAAAAAGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTT
7419321 ATTAAAGAGG
Statistics
Matches: 87, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
50 9 0.10
51 29 0.33
52 3 0.03
56 40 0.46
57 6 0.07
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATCG
Found at i:7419295 original size:25 final size:26
Alignment explanation
Indices: 7419168--7419320 Score: 177
Period size: 26 Copynumber: 5.8 Consensus size: 26
7419158 GCAGAAGTGC
*
7419168 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
7419194 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
7419220 -AAAGGGCATAACTTATGCCTCAGTTTACCG
1 AAAAGGG-----CTTATGCCCCAGTTTATCG
* *
7419250 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
7419276 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
7419301 AAAAAGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
7419321 ATTAAAGAGG
Statistics
Matches: 110, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
25 37 0.34
26 50 0.45
30 17 0.15
31 6 0.05
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:7421171 original size:40 final size:40
Alignment explanation
Indices: 7421087--7421277 Score: 194
Period size: 40 Copynumber: 4.8 Consensus size: 40
7421077 TTGAACGATG
* * * * *
7421087 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAATGA-TCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACT-AAA
* * *
7421127 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
*
7421167 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
* *
7421206 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AA
* *
7421247 T-CGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAG
7421278 GAGCTATATC
Statistics
Matches: 128, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
39 34 0.27
40 83 0.65
41 11 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:7421293 original size:79 final size:79
Alignment explanation
Indices: 7421140--7421304 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
7421130 GGACTAAGAT
* ** *
7421140 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTACGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
7421205 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
7421219 CCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTACGAGATACTA-AATCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
7421282 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
7421298 CCGAAGG
1 CCGAAGG
7421305 TACGCGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 46 0.63
80 27 0.37
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:7428432 original size:65 final size:65
Alignment explanation
Indices: 7428328--7428457 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
7428318 TGCTAGATGA
7428328 GGAAGAATCGGCTAGCAAGTTGTGTGCTAAGGCCGAATATAACTTTTGTATGTTAATGAGCAATG
1 GGAAGAATCGGCTAGCAAGTTGTGTGCTAAGGCCGAATATAACTTTTGTATGTTAATGAGCAATG
*
7428393 GGAAGAATCGGCTAGCAAGTTGTGTGCTAAGGTCGAATATAACTTTTGTATGTTAATGAGCAATG
1 GGAAGAATCGGCTAGCAAGTTGTGTGCTAAGGCCGAATATAACTTTTGTATGTTAATGAGCAATG
7428458 CATGTGTTAA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.30
Consensus pattern (65 bp):
GGAAGAATCGGCTAGCAAGTTGTGTGCTAAGGCCGAATATAACTTTTGTATGTTAATGAGCAATG
Found at i:7429040 original size:40 final size:40
Alignment explanation
Indices: 7428985--7429068 Score: 125
Period size: 40 Copynumber: 2.1 Consensus size: 40
7428975 NNNNNNNNNN
*
7428985 TTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCA
1 TTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCA
* *
7429025 TTTGTGTGAGTTACTATAACCGGGCTATGTCCCGAAGGCA
1 TTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
7429065 TTTG
1 TTTG
7429069 AACGAGGAGC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 38 0.95
41 2 0.05
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (40 bp):
TTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
Found at i:7437040 original size:40 final size:40
Alignment explanation
Indices: 7436802--7437026 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
7436792 TTGAATGATG
* * * *
7436802 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
7436842 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
7436882 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
7436921 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
7436961 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
7437002 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
7437027 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:7437048 original size:119 final size:119
Alignment explanation
Indices: 7436802--7437059 Score: 285
Period size: 119 Copynumber: 2.2 Consensus size: 119
7436792 TTGAATGATG
* *
7436802 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
7436867 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
* * * **
7436921 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
7436984 TTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAA
* *
7437041 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
7437060 TACGTGATTT
Statistics
Matches: 118, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
118 4 0.03
119 82 0.69
120 32 0.27
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
Found at i:7441187 original size:40 final size:40
Alignment explanation
Indices: 7441103--7441327 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
7441093 TTGAATGATG
* * * *
7441103 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
7441143 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
7441183 TCCGGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
7441222 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
7441262 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
7441303 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
7441328 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.20
40 118 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:7441349 original size:119 final size:119
Alignment explanation
Indices: 7441110--7441360 Score: 260
Period size: 119 Copynumber: 2.1 Consensus size: 119
7441100 ATGTCCGGGC
*
7441110 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
* ** *
7441175 ATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAAATCCAGGT
66 ATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTGACTAAATCCAGGT
* * * ** *
7441229 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGTG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
* * * * *
7441292 AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGT
64 AGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACAAGTGA-CTAAATCCAGGT
* *
7441348 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
7441361 TACGTGATTT
Statistics
Matches: 109, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
118 3 0.03
119 76 0.70
120 30 0.28
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
ATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTGACTAAATCCAGGT
Found at i:7446723 original size:27 final size:27
Alignment explanation
Indices: 7446704--7446994 Score: 413
Period size: 27 Copynumber: 10.8 Consensus size: 27
7446694 ATTACCAAAG
*
7446704 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
7446731 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
7446758 TACCTTCGATTTATAGAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
7446785 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
7446812 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
7446839 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
**
7446866 TACCCTCGATTTATGGAATTACCA-TT
1 TACCCTCGATTTACAGAATTACCATTT
*
7446892 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
7446919 TACCCTCAACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
7446946 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
7446973 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
7446995 TGAAATACCA
Statistics
Matches: 242, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
26 25 0.10
27 217 0.90
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:7447003 original size:27 final size:27
Alignment explanation
Indices: 7446665--7447301 Score: 359
Period size: 27 Copynumber: 23.6 Consensus size: 27
7446655 TTAGTTTACC
** * * *
7446665 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
7446692 AAATTACCAAAGTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* ****
7446719 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* *** *
7446746 GAATTACCATTTTACCTTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* * ***
7446773 GAATTATCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* **** *
7446800 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
**** *
7446827 AAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* *** *
7446854 GAATTACCATTTTACCCTCGATTTATG
1 AAATTACCAAAATACCCTCGATTTATA
* **
7446881 GAATTACC-ATTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* *** * * *
7446907 GAATTACCATTTTACCCTCAACTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* **** *
7446934 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
**** *
7446961 AAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
** * * *
7446988 AAATTACTGAAATACCATTGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
*
7447015 AAATTACCAAAATACCCTCGA-TCAGTA
1 AAATTACCAAAATACCCTCGATTTA-TA
* *
7447042 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * *
7447069 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * * *
7447096 AAATTACTAAAATACACTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* *
7447123 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * * *
7447150 AAATTACCAAAATACCTTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* *
7447177 AAATTACCAAAATA-CCTCTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * *
7447204 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * * *
7447231 AAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
7447258 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
7447285 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
7447302 CTGATTTGTG
Statistics
Matches: 519, Mismatches: 81, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
26 30 0.06
27 485 0.93
28 4 0.01
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:7447031 original size:54 final size:54
Alignment explanation
Indices: 7446946--7447331 Score: 411
Period size: 54 Copynumber: 7.1 Consensus size: 54
7446936 ATTACCGTTT
* * **** ** **
7446946 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAA
* * **
7447000 TACCATTGATTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAA
* * ** * * *
7447054 TACCCCTAGTTTGTAAAATTACTAAAATACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTC-GATTTGTAAAATTACCAAAA
* * *
7447108 TACACTTGGTTTATAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TTTGTAAAATTACCAAAA
* *
7447162 TACCTTTGGTTTACAAAATTACCAAAATA-CCTCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTC-GATTTGTAAAATTACCAAAA
* * *
7447216 TACCCTTGGTTTACAAAATTACCAAAATACCATTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAA
* ***
7447270 TACCCTTGGTTTACAAAATTACCAAAATACCC-CTGATTTGTGAAATTATTGAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTC-GATTTGTAAAATTACCAAAA
7447324 TACCCTTG
1 TACCCTTG
7447332 TAGGGTAGAA
Statistics
Matches: 280, Mismatches: 46, Indels: 12
0.83 0.14 0.04
Matches are distributed among these distances:
53 3 0.01
54 275 0.98
55 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAA
Found at i:7447315 original size:27 final size:27
Alignment explanation
Indices: 7447014--7447317 Score: 367
Period size: 27 Copynumber: 11.3 Consensus size: 27
7447004 ATTGATTTAC
* **
7447014 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
*
7447041 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
7447068 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * * *
7447095 AAAATTACTAAAATACACTTGGTTTAT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
7447122 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
** **
7447149 AAAATTACCAAAATACCTTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
*
7447176 AAAATTACCAAAATACCTCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* **
7447203 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
**
7447230 AAAATTACCAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* **
7447257 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
*
7447284 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
7447311 GAAATTA
1 AAAATTA
7447318 TTGAAATACC
Statistics
Matches: 239, Mismatches: 37, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
27 235 0.98
28 4 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:7447325 original size:81 final size:81
Alignment explanation
Indices: 7446987--7447327 Score: 409
Period size: 81 Copynumber: 4.2 Consensus size: 81
7446977 CTCGATTTAC
* * * * *
7446987 AAAATTACTGAAATACCATTGATTTACAAAATTACCAAAATACCC-TCGATCAGTAAAATTACCA
1 AAAATTACTAAAATACCATTGGTTTACAAAATTACCAAAATACCCTTGGTTTA-TAAAATTACCA
7447051 AAATACCCCTAGTTTGT
65 AAATACCCCTAGTTTGT
** ** * *
7447068 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAATACACTTGGTTTATAAAATTACCAA
1 AAAATTACTAAAATACCATTGGTTTACAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAA
7447133 AATACCCCTAGTTTGT
66 AATACCCCTAGTTTGT
* * *
7447149 AAAATTACCAAAATACCTTTGGTTTACAAAATTACCAAAATA-CCTCTGGTTTGTAAAATTACCA
1 AAAATTACTAAAATACCATTGGTTTACAAAATTACCAAAATACCCT-TGGTTTATAAAATTACCA
* * **
7447213 AAATACCCTTGGTTTAC
65 AAATACCCCTAGTTTGT
* ** *
7447230 AAAATTACCAAAATACCATTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAA
1 AAAATTACTAAAATACCATTGGTTTACAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAA
7447295 AATACCCCT-GATTTGT
66 AATACCCCTAG-TTTGT
* * *
7447311 GAAATTATTGAAATACC
1 AAAATTACTAAAATACC
7447328 CTTGTAGGGT
Statistics
Matches: 221, Mismatches: 35, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
80 3 0.01
81 211 0.95
82 7 0.03
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (81 bp):
AAAATTACTAAAATACCATTGGTTTACAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAA
AATACCCCTAGTTTGT
Found at i:7447350 original size:27 final size:28
Alignment explanation
Indices: 7447311--7447368 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 28
7447301 CCTGATTTGT
* *
7447311 GAAATTATTGAAATACCCTTGTAGGGTA
1 GAAATTATCGAAATACCCCTGTAGGGTA
7447339 GAAA-TATCGAAATACCCCTGTAGGGTA
1 GAAATTATCGAAATACCCCTGTAGGGTA
7447366 GAA
1 GAA
7447369 TTACCATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
27 24 0.86
28 4 0.14
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (28 bp):
GAAATTATCGAAATACCCCTGTAGGGTA
Found at i:7447647 original size:25 final size:25
Alignment explanation
Indices: 7447578--7447640 Score: 117
Period size: 25 Copynumber: 2.5 Consensus size: 25
7447568 AGGAAGTGCT
*
7447578 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCA
7447603 AAAAGGGCTTTGCCCTAGTTTACCA
1 AAAAGGGCTTTGCCCTAGTTTACCA
7447628 AAAAGGGCTTTGC
1 AAAAGGGCTTTGC
7447641 TCCAGTTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTACCA
Found at i:7449859 original size:27 final size:27
Alignment explanation
Indices: 7449828--7450467 Score: 345
Period size: 27 Copynumber: 23.7 Consensus size: 27
7449818 CCTTAAATTG
*
7449828 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *****
7449855 CAAAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* **** *
7449882 TAGAATTACCGTTTTACCCTCAATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * ***
7449909 CAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *** **
7449936 TAGAATTACCATTTTACCCTTAATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* **** *
7449963 TAGAATTACCGTTTTACCCTAGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* **** * *
7449990 CAAAATTACCGTTTTACACTCAATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * ***
7450017 CAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *** *
7450044 TAGAATTACCATTTTACCCTCAATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * ***
7450071 TAGAATTACTATTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *** *
7450098 TAGAATTACCATTTTACCCTCGACTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * * ****
7450125 CAGAATAACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * * *
7450152 CAGAATTACTAAAATACCCTTGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
7450179 CAAAATTACCAAAATACCCTCGA-TCA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
7450205 GTAAAATTACCAAAATA-CCTCTGGTTTG
1 -TAAAATTACCAAAATACCCTC-GATTTA
* * * *
7450233 TAAAGTTACTAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-GATTTA
* * * *
7450260 TAAAATTACTAAAATACCTTTGGTTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
7450287 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTA
*
7450314 TAAAATTACCAAAATACCCTTGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *
7450341 CAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTA
* *
7450368 TAAAATTACCAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * * *
7450395 CAAAATTACCAAAATACCCTTGGTTTG
1 TAAAATTACCAAAATACCCTCGATTTA
* * *
7450422 GAAAATTACCAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCTCGATTTA
7450449 TAAAATTACCAAAATACCC
1 TAAAATTACCAAAATACCC
7450468 CTAATTTGTG
Statistics
Matches: 522, Mismatches: 82, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
26 7 0.01
27 511 0.98
28 4 0.01
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.35
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTA
Found at i:7450180 original size:54 final size:54
Alignment explanation
Indices: 7449842--7450160 Score: 458
Period size: 54 Copynumber: 5.9 Consensus size: 54
7449832 ATTACCAAAG
* * ** *
7449842 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
7449896 TACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
* * * * * * *
7449950 TACCCTTAATTTATAGAATTACCGTTTTACCCTAGATTTACAAAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
*
7450004 TACACTCAATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
* *
7450058 TACCCTCAATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
* * * * *
7450112 TACCCTCGACTTACAGAATAACCGTTTTACCCTCGATTTACAGAATTAC
1 TACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTAC
7450161 TAAAATACCC
Statistics
Matches: 235, Mismatches: 30, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 235 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (54 bp):
TACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
Found at i:7450201 original size:81 final size:81
Alignment explanation
Indices: 7449842--7450189 Score: 464
Period size: 81 Copynumber: 4.3 Consensus size: 81
7449832 ATTACCAAAG
* **
7449842 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
7449907 TACAGAATTACCATTT
66 TACAGAATTACCATTT
* **
7449923 TACCCTCGATTTATAGAATTACCATTTTACCCTTAATTTATAGAATTACCGTTTTACCCT-AGAT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCA-AT
* *
7449987 TTACAAAATTACCGTTT
65 TTACAGAATTACCATTT
* * *
7450004 TACACTCAATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
* *
7450069 TATAGAATTACTATTT
66 TACAGAATTACCATTT
* * * * *
7450085 TACCCTCGATTTATAGAATTACCATTTTACCCTCGACTTACAGAATAACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
* ***
7450150 TACAGAATTACTAAAA
66 TACAGAATTACCATTT
* *
7450166 TACCCTTGATTTACAAAATTACCA
1 TACCCTCGATTTACAGAATTACCA
7450190 AAATACCCTC
Statistics
Matches: 232, Mismatches: 33, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
80 1 0.00
81 230 0.99
82 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
TACAGAATTACCATTT
Found at i:7450481 original size:27 final size:27
Alignment explanation
Indices: 7450155--7450484 Score: 365
Period size: 27 Copynumber: 12.2 Consensus size: 27
7450145 CGATTTACAG
* * * **
7450155 AATTACTAAAATACCCTTGATTTACAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* **
7450182 AATTACCAAAATA-CCCTCGATCAGTAA
1 AATTACCAAAATACCCCT-GGTTTGTAA
*
7450209 AATTACCAAAATACCTCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* *
7450236 AGTTACTAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* ** *
7450263 AATTACTAAAATACCTTTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
7450290 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* * **
7450317 AATTACCAAAATACCCTTGATTTACAA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
7450344 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* **
7450371 AATTACCAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* *
7450398 AATTACCAAAATACCCTTGGTTTGGAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* *
7450425 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTGTAA
** *
7450452 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCCTGGTTTGTAA
7450479 AATTAC
1 AATTAC
7450485 TGAAATACAC
Statistics
Matches: 256, Mismatches: 45, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
26 3 0.01
27 250 0.98
28 3 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTGTAA
Found at i:7450492 original size:54 final size:54
Alignment explanation
Indices: 7450155--7450484 Score: 448
Period size: 54 Copynumber: 6.1 Consensus size: 54
7450145 CGATTTACAG
* * * **
7450155 AATTACTAAAATACCCTTGATTTACAAAATTACCAAAATA-CCCTCGATCAGTAA
1 AATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAG-TTTGTAA
** * * *
7450209 AATTACCAAAATA-CCTCTGGTTTGTAAAGTTACTAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCT-TGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAA
* * *
7450263 AATTACTAAAATACCTTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAA
*
7450317 AATTACCAAAATACCCTTGATTTACAAAATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAA
* * *
7450371 AATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGGTTTGGAA
1 AATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAA
* * *
7450425 AATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAA
7450479 AATTAC
1 AATTAC
7450485 TGAAATACAC
Statistics
Matches: 244, Mismatches: 29, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
53 3 0.01
54 234 0.96
55 7 0.03
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAA
Found at i:7453739 original size:27 final size:27
Alignment explanation
Indices: 7453562--7454039 Score: 211
Period size: 27 Copynumber: 17.7 Consensus size: 27
7453552 TTAGTTTACC
* * * * *
7453562 AAATTACTGAAATGCCCTCAAATTGTA
1 AAATTACTAAAATACCCTCGATTTATA
*
7453589 AAATTAC-AAAAGTACCCTCAATTTATA
1 AAATTACTAAAA-TACCCTCGATTTATA
* *****
7453616 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACTAAAATACCCTCGATTTATA
* ***** *
7453643 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACTAAAATACCCTCGATTTATA
* * ***
7453670 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACTAAAATACCCTCGATTTATA
* **** *
7453697 GAATTACTGTTTTACCCTCGATTTACA
1 AAATTACTAAAATACCCTCGATTTATA
* * *
7453724 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACTAAAATACCCTCGATTTATA
* *
7453751 AAATTACCAAAATACCCTCGA-TCAGTA
1 AAATTACTAAAATACCCTCGATTTA-TA
* * * *
7453778 AAATTACCAAAATACCCTAG-TCTGTA
1 AAATTACTAAAATACCCTCGATTTATA
* * *
7453804 AAATTGCTAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GATTTATA
* *
7453831 AAATTA-TAGAAATACCCTCAATTTGTA
1 AAATTACTA-AAATACCCTCGATTTATA
* *
7453858 AAATTACTAAAATACCC-CTAGTTTGTA
1 AAATTACTAAAATACCCTCGA-TTTATA
* * *
7453885 AAATTACCAAAATACCACT-GGTTTGTA
1 AAATTACTAAAATACC-CTCGATTTATA
** * *
7453912 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTATA
* *
7453939 AAATTACCAAAATACCC-CTGATTTACA
1 AAATTACTAAAATACCCTC-GATTTATA
* * *
7453966 AAGTTAC-AGAAATACCCTTGACTTTCTAA
1 AAATTACTA-AAATACCCTCGA-TTTAT-A
* * * * *
7453995 AAATTA-TGGAAATACCATTGGTTTACA
1 AAATTACT-AAAATACCCTCGATTTATA
*
7454022 AAATTACTGAAATACCCT
1 AAATTACTAAAATACCCT
7454040 TGGTTTGTAG
Statistics
Matches: 369, Mismatches: 61, Indels: 42
0.78 0.13 0.09
Matches are distributed among these distances:
26 31 0.08
27 311 0.84
28 11 0.03
29 16 0.04
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTATA
Found at i:7453794 original size:81 final size:80
Alignment explanation
Indices: 7453709--7453985 Score: 292
Period size: 81 Copynumber: 3.4 Consensus size: 80
7453699 ATTACTGTTT
** * *
7453709 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATC
1 TACCC-CGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTCAATT
*
7453774 AGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * ** * * *
7453790 TA-CCCTAGTCTGTAAAATTGCTAAAATACCCCTGGTTTGTAAAATTA-TAGAAATACCCTCAAT
1 TACCCCGA-TTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCA-AAATACCCTCAAT
*
7453853 TTGTAAAATTACTAAAA
64 TTGTAAAATTACCAAAA
* ** * *
7453870 TACCCCTAGTTTGTAAAATTACCAAAATACCAC-TGGTTTGTAAAATTACCGAAATACCCTCAAT
1 TACCCCGA-TTTACAAAATTACTAAAATACC-CTTGGTTTGTAAAATTACCAAAATACCCTCAAT
7453934 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
*
7453951 TACCCCTGATTTACAAAGTTAC-AGAAATACCCTTG
1 TACCCC-GATTTACAAAATTACTA-AAATACCCTTG
7453986 ACTTTCTAAA
Statistics
Matches: 165, Mismatches: 23, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
79 3 0.02
80 64 0.39
81 96 0.58
82 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (80 bp):
TACCCCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:7454042 original size:27 final size:27
Alignment explanation
Indices: 7453723--7454068 Score: 243
Period size: 27 Copynumber: 12.8 Consensus size: 27
7453713 CTCGATTTAC
**
7453723 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACTAAAATACCCTTGGTTTGT
* * * **
7453750 AAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* * *
7453777 AAAATTACCAAAATACCC-TAGTCTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* *
7453803 AAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
***
7453830 AAAATTA-TAGAAATACCCTCAATTTGT
1 AAAATTACTA-AAATACCCTTGGTTTGT
* *
7453857 AAAATTACTAAAATACCCCTAGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
*
7453884 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACTAAAATACC-CTTGGTTTGT
** ***
7453911 AAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* * * **
7453938 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTAAAATACCCTTGGTTTGT
* * *
7453965 AAAGTTAC-AGAAATACCCTTGACTTTCT
1 AAAATTACTA-AAATACCCTTG-GTTTGT
* * **
7453993 AAAAATTA-TGGAAATACCATTGGTTTAC
1 -AAAATTACT-AAAATACCCTTGGTTTGT
*
7454021 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGT
* * * *
7454048 AGATTTACCAAAACACCCTTG
1 AAAATTACTAAAATACCCTTG
7454069 TAGGATGAAA
Statistics
Matches: 254, Mismatches: 54, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
26 24 0.09
27 204 0.80
28 10 0.04
29 16 0.06
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTTGGTTTGT
Found at i:7454120 original size:27 final size:27
Alignment explanation
Indices: 7454090--7454186 Score: 88
Period size: 27 Copynumber: 3.6 Consensus size: 27
7454080 GACTAAAATA
** *
7454090 CCCCTATTTGGTAAAAAGATCGTAAAG
1 CCCCTATAGGGTAAAAAGACCGTAAAG
* * *
7454117 CCCCTGTAGGGTAAAGAGACCGTAAAT
1 CCCCTATAGGGTAAAAAGACCGTAAAG
* **
7454144 CCCCTGTAGGGTAAAGTGACCGTAATA-
1 CCCCTATAGGGTAAAAAGACCGTAA-AG
*
7454171 CCCCTATATGGTAAAA
1 CCCCTATAGGGTAAAA
7454187 TGGAAAATAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.23
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:7455052 original size:25 final size:26
Alignment explanation
Indices: 7454991--7455136 Score: 208
Period size: 26 Copynumber: 5.7 Consensus size: 26
7454981 GAGGAAGTCC
7454991 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
7455017 AAAAGGGCTTATGCCCCAGTTTAGTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
7455043 -AAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
7455068 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
***
7455094 AAAAGGGCTT-TGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
7455119 AAAAGGGCTT-TGCCCCAG
1 AAAAGGGCTTATGCCCCAG
7455137 ATATTAAAGA
Statistics
Matches: 109, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
25 52 0.48
26 57 0.52
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:7455071 original size:51 final size:52
Alignment explanation
Indices: 7454991--7455136 Score: 226
Period size: 51 Copynumber: 2.9 Consensus size: 52
7454981 GAGGAAGTCC
**
7454991 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTAGTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTAGTG
* *
7455043 -AAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTAGTG
*
7455094 AAAAGGGCTT-TGCCCCAGTTTACCAAAAAGGGCTT-TGCCCCAG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAG
7455137 ATATTAAAGA
Statistics
Matches: 87, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
50 8 0.09
51 70 0.80
52 9 0.10
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTAGTG
Found at i:7455348 original size:42 final size:42
Alignment explanation
Indices: 7455283--7455374 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
7455273 TAGTCTCCCC
* * ** *
7455283 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATAGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
7455325 AAATAGGCTTGTATACATCCATTGACATTACATGTGATATTG
1 AAATAGGCTTGCATACATCCATTGACATTACATGTGATATTG
7455367 AAATAGGC
1 AAATAGGC
7455375 CTAAGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.36
Consensus pattern (42 bp):
AAATAGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:7455475 original size:31 final size:31
Alignment explanation
Indices: 7455398--7455476 Score: 115
Period size: 31 Copynumber: 2.5 Consensus size: 31
7455388 CGTTTACAGT
* *
7455398 AAAGGCTTCGGCCTAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
7455429 AAAGGCTTCGGCCCAGTGATATGAGTTT-TGA
1 AAAGGCTTCGGCCCAGTGATATGA-TTTATGA
*
7455460 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
7455477 AACCATTAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
31 41 0.93
32 3 0.07
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:7456710 original size:43 final size:43
Alignment explanation
Indices: 7456554--7456719 Score: 192
Period size: 43 Copynumber: 3.9 Consensus size: 43
7456544 ATTATCAAGA
* * *
7456554 TGTGATTACATGTAAGACCATGTCTGAGACATTGACATGGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
7456597 TGTGATTACGTGTAAGACCATGTCTGGAACATTGGCATCGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * * *
7456640 TATGATTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
7456682 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
7456720 TGTGTGAGCT
Statistics
Matches: 105, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
42 8 0.08
43 97 0.92
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:7462317 original size:32 final size:32
Alignment explanation
Indices: 7462281--7462346 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
7462271 CTAATTAGAG
7462281 AGACTAAAGAAAAAGTGAAAGTGATCCGCGAT
1 AGACTAAAGAAAAAGTGAAAGTGATCCGCGAT
*
7462313 AGACTGAAGAAAAAGTGAAAGTGATCCGCGAT
1 AGACTAAAGAAAAAGTGAAAGTGATCCGCGAT
7462345 AG
1 AG
7462347 TTTGAAAGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.45, C:0.12, G:0.27, T:0.15
Consensus pattern (32 bp):
AGACTAAAGAAAAAGTGAAAGTGATCCGCGAT
Found at i:7470979 original size:43 final size:43
Alignment explanation
Indices: 7470931--7471023 Score: 141
Period size: 43 Copynumber: 2.2 Consensus size: 43
7470921 ATTATCGAGA
* *
7470931 TGTGATTACATGTAAAACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAAACCATGTCTAGGACATTGACATTGTAT
* *
7470974 TGTGATTACATGTAAGACCATGTCTAGGACATTGATATTGTAT
1 TGTGATTACATGTAAAACCATGTCTAGGACATTGACATTGTAT
*
7471017 TATGATT
1 TGTGATT
7471024 TCGAGTAAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.38
Consensus pattern (43 bp):
TGTGATTACATGTAAAACCATGTCTAGGACATTGACATTGTAT
Found at i:7471032 original size:43 final size:43
Alignment explanation
Indices: 7470933--7471041 Score: 139
Period size: 43 Copynumber: 2.5 Consensus size: 43
7470923 TATCGAGATG
* * * *
7470933 TGATTACATGTAAAACCATGTCTGGGACATTGGCATTGTATTG
1 TGATTACATGTAAGACCATGTCTAGGACATTGACATTGTATTA
*
7470976 TGATTACATGTAAGACCATGTCTAGGACATTGATATTGTATTA
1 TGATTACATGTAAGACCATGTCTAGGACATTGACATTGTATTA
* *
7471019 TGATTTCGA-GTAAGACCCTGTCT
1 TGATTAC-ATGTAAGACCATGTCT
7471042 GTAACACCCC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 57 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTAGGACATTGACATTGTATTA
Found at i:7473730 original size:585 final size:585
Alignment explanation
Indices: 7471958--7473715 Score: 3471
Period size: 585 Copynumber: 3.0 Consensus size: 585
7471948 ACCGAACTTA
7471958 TAAGCATTTATACTCATGCATAACCTTAACCAAATTATACTCAAGTATAATTAAAATTATTTACC
1 TAAGCATTTATACTCATGCATAACCTTAACCAAATTATACTCAAGTATAATTAAAATTATTTACC
7472023 AATTCTGGCATATATTAACTACCACATTTACTATGCATCTTAGTAAATAGCTTAATAAATAGGAT
66 AATTCTGGCATATATTAACTACCACATTTACTATGCATCTTAGTAAATAGCTTAATAAATAGGAT
*
7472088 ATACATAATCCATAAGCAAAATGACTAAAATTTCGAACATGAAGTTAAGGCATTTTCAATGCATA
131 ATACATAATCCATAAGCAAAATGACAAAAATTTCGAACATGAAGTTAAGGCATTTTCAATGCATA
* *
7472153 AAACTCTTACCACAAGTCATTCATGCATAATACTGGGCACTTTAAACTAACGAATTTCGAGTACA
196 AAACTCTTACCACAAGTCATTCATGCATAATACTGGGCACTTTAAATTAACGAATTTCAAGTACA
7472218 GTAAAGCATAACCGAGTTATCAATACCAAGCTTACTAAACTTTGTAACCAAGCACACATAAAACC
261 GTAAAGCATAACCGAGTTATCAATACCAAGCTTACTAAACTTTGTAACCAAGCACACATAAAACC
7472283 AAATCTAAACATAAATAGCAAGCCATTTTCGCATGGCTTAAATACATAACCAAAATCAATATCTC
326 AAATCTAAACATAAATAGCAAGCCATTTTCGCATGGCTTAAATACATAACCAAAATCAATATCTC
7472348 AAAAGTATGTTCCAGCCTATACATGCCATAATACGAGTTTGATTATCTAAATACCGAAGCTGTAG
391 AAAAGTATGTTCCAGCCTATACATGCCATAATACGAGTTTGATTATCTAAATACCGAAGCTGTAG
*
7472413 ATAGTGTGCTGGGCTTGGCTGATAGTTCCCGAGCTTGTAGCTTGACTTCAAAATCTATAAAACAG
456 ATAGTGTGCTGAGCTTGGCTGATAGTTCCCGAGCTTGTAGCTTGACTTCAAAATCTATAAAACAG
7472478 AGTAAGCATAGCACACAAAGTAAGCTATCAAGGCGTAGTAAGTCATAAGCAAATAAACAACTCAT
521 AGTAAGCATAGCACACAAAGTAAGCTATCAAGGCGTAGTAAGTCATAAGCAAATAAACAACTCAT
7472543 TAAGCATTTATACTCATGCATAACCTTAACCAAATTATACTCAAGTATAATTAAAATTATTTACC
1 TAAGCATTTATACTCATGCATAACCTTAACCAAATTATACTCAAGTATAATTAAAATTATTTACC
*
7472608 AATTCTGGCATATATTAACTACCACATTTACTATGCATCTTAGTACATAGCTTAATAAATAGGAT
66 AATTCTGGCATATATTAACTACCACATTTACTATGCATCTTAGTAAATAGCTTAATAAATAGGAT
7472673 ATACATAATCCATAAGCAAAATGACAAAAATTTCGAACATGAAGTTAAGGCATTTTCAATGCATA
131 ATACATAATCCATAAGCAAAATGACAAAAATTTCGAACATGAAGTTAAGGCATTTTCAATGCATA
7472738 AAACTCTTACCACAAGTCATTCATGCATAATACTGGGCACTTTAAATTAACGAATTTCAAGTACA
196 AAACTCTTACCACAAGTCATTCATGCATAATACTGGGCACTTTAAATTAACGAATTTCAAGTACA
7472803 GTAAAGCATAACCGAGTTATCAATACCAAGCTTACTAAACTTTGTAACCAAGCACACATAAAACC
261 GTAAAGCATAACCGAGTTATCAATACCAAGCTTACTAAACTTTGTAACCAAGCACACATAAAACC
7472868 AAATCTAAACATAAATAGCAAGCCATTTTCGCATGGCTTAAATACATAACCAAAATCAATATCTC
326 AAATCTAAACATAAATAGCAAGCCATTTTCGCATGGCTTAAATACATAACCAAAATCAATATCTC
7472933 AAAAGTATGTTCCAGCCTATACATGCCATAATACGAGTTTGATTATCTAAATACCGAAGCTGTAG
391 AAAAGTATGTTCCAGCCTATACATGCCATAATACGAGTTTGATTATCTAAATACCGAAGCTGTAG
7472998 ATAGTGTGCTGAGCTTGGCTGATAGTTCCCGAGCTTGTAGCTTGACTTCAAAATCTATAAAACAG
456 ATAGTGTGCTGAGCTTGGCTGATAGTTCCCGAGCTTGTAGCTTGACTTCAAAATCTATAAAACAG
7473063 AGTAAGCATAGCACACAAAGTAAGCTATCAAGGCGTAGTAAGTCATAAGCAAATAAACAACTCAT
521 AGTAAGCATAGCACACAAAGTAAGCTATCAAGGCGTAGTAAGTCATAAGCAAATAAACAACTCAT
7473128 TAAGCATTTATACTCATGCATAACCTTAACCAAATTATACTCAAGTATAATTAAAATTATTTACC
1 TAAGCATTTATACTCATGCATAACCTTAACCAAATTATACTCAAGTATAATTAAAATTATTTACC
7473193 AATTCTGGCATATATTAACTACCACATTTACTATGCATCTTAGTAAATAGCTTAATAAATAGGAT
66 AATTCTGGCATATATTAACTACCACATTTACTATGCATCTTAGTAAATAGCTTAATAAATAGGAT
7473258 ATACATAATCCATAAGCAAAATGACAAAAATTTCGAACATGAAGTTAAGGCATTTTCAATGCATA
131 ATACATAATCCATAAGCAAAATGACAAAAATTTCGAACATGAAGTTAAGGCATTTTCAATGCATA
7473323 AAACTCTTACCACAAGTCATTCATGCATAATACTGGGCACTTTAAATTAACGAATTTCAAGTACA
196 AAACTCTTACCACAAGTCATTCATGCATAATACTGGGCACTTTAAATTAACGAATTTCAAGTACA
7473388 GTAAAGCATAACCGAGTTATCAATACCAAGCTTACTAAACTTTGTAACCAAGCACACATAAAACC
261 GTAAAGCATAACCGAGTTATCAATACCAAGCTTACTAAACTTTGTAACCAAGCACACATAAAACC
7473453 AAATCTAAACATAAATAGCAAGCCATTTTCGCATGGCTTAAATACATAACCAAAATCAATATCTC
326 AAATCTAAACATAAATAGCAAGCCATTTTCGCATGGCTTAAATACATAACCAAAATCAATATCTC
7473518 AAAAGTATGTTCCAGCCTATACATGCCATAATACGAGTTTGATTATCTAAATACCGAAGCTGTAG
391 AAAAGTATGTTCCAGCCTATACATGCCATAATACGAGTTTGATTATCTAAATACCGAAGCTGTAG
7473583 ATAGTGTGCTGAGCTTGGCTGATAGTTCCCGAGCTTGTAGCTTGACTTCAAAATCTATAAAACAG
456 ATAGTGTGCTGAGCTTGGCTGATAGTTCCCGAGCTTGTAGCTTGACTTCAAAATCTATAAAACAG
7473648 AGTAAGCATAGCACACAAAGTAAGCTATCAAGGCGTAGTAAGTCATAAGCAAATAAACAACTCAT
521 AGTAAGCATAGCACACAAAGTAAGCTATCAAGGCGTAGTAAGTCATAAGCAAATAAACAACTCAT
7473713 TAA
1 TAA
7473716 TATAATTGAC
Statistics
Matches: 1167, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
585 1167 1.00
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (585 bp):
TAAGCATTTATACTCATGCATAACCTTAACCAAATTATACTCAAGTATAATTAAAATTATTTACC
AATTCTGGCATATATTAACTACCACATTTACTATGCATCTTAGTAAATAGCTTAATAAATAGGAT
ATACATAATCCATAAGCAAAATGACAAAAATTTCGAACATGAAGTTAAGGCATTTTCAATGCATA
AAACTCTTACCACAAGTCATTCATGCATAATACTGGGCACTTTAAATTAACGAATTTCAAGTACA
GTAAAGCATAACCGAGTTATCAATACCAAGCTTACTAAACTTTGTAACCAAGCACACATAAAACC
AAATCTAAACATAAATAGCAAGCCATTTTCGCATGGCTTAAATACATAACCAAAATCAATATCTC
AAAAGTATGTTCCAGCCTATACATGCCATAATACGAGTTTGATTATCTAAATACCGAAGCTGTAG
ATAGTGTGCTGAGCTTGGCTGATAGTTCCCGAGCTTGTAGCTTGACTTCAAAATCTATAAAACAG
AGTAAGCATAGCACACAAAGTAAGCTATCAAGGCGTAGTAAGTCATAAGCAAATAAACAACTCAT
Found at i:7477458 original size:47 final size:46
Alignment explanation
Indices: 7477394--7477557 Score: 188
Period size: 47 Copynumber: 3.5 Consensus size: 46
7477384 ATCCATAAGT
7477394 GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAG-TCAGATGCCTAGTTACATCTCTC
* * * * * * ***
7477441 GAACTCAGACTCAACTCAACGAGTTCGGACG-CTCGCATCCATAAGT-
1 GAACTCGGACTCAACTCAACGAG-TCAGATGCCTAG-TTACATCTCTC
*
7477487 GAACTCGGACTCAACTCAACGAGTCCAGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGT-CAGATGCCTAGTTACATCTCTC
7477534 GAACTCGGACTCAACTCAACGAGT
1 GAACTCGGACTCAACTCAACGAGT
7477558 TCGGACATTC
Statistics
Matches: 93, Mismatches: 20, Indels: 8
0.77 0.17 0.07
Matches are distributed among these distances:
45 1 0.01
46 33 0.35
47 59 0.63
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTCAGATGCCTAGTTACATCTCTC
Found at i:7477604 original size:46 final size:46
Alignment explanation
Indices: 7477340--7477604 Score: 206
Period size: 46 Copynumber: 5.7 Consensus size: 46
7477330 AGTAACCCGC
* * * * *
7477340 CCATAAGTGAACTCGGGCTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
* *
7477386 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GAC-A-TTCACAT
* * ** *
7477436 CTC-T---CGAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
* *
7477479 CCATAAGTGAACTCGGACTCAACTCAACGAGTCCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GAC-A-TTCACAT
* *
7477529 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
* *
7477572 CCATAAGTGAACTCGAACTCAACTCAATGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
7477605 TGGATGCTCA
Statistics
Matches: 173, Mismatches: 26, Indels: 40
0.72 0.11 0.17
Matches are distributed among these distances:
42 4 0.02
43 10 0.06
44 5 0.03
45 2 0.01
46 82 0.47
47 51 0.29
48 2 0.01
49 5 0.03
50 8 0.05
51 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:7477611 original size:93 final size:93
Alignment explanation
Indices: 7477348--7477604 Score: 406
Period size: 93 Copynumber: 2.8 Consensus size: 93
7477338 GCCCATAAGT
* * *
7477348 GAACTCGGGCTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
7477413 CGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* *
7477441 GAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
7477506 CGAGTCCAGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * *
7477534 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
7477599 TGAGTT
66 CGAGTT
7477605 TGGATGCTCA
Statistics
Matches: 149, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 149 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:7480038 original size:30 final size:30
Alignment explanation
Indices: 7479994--7480082 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
7479984 CAAAGATAAC
*
7479994 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
7480023 GAGAAACCCGGAATAAAGAAATCCATA-ATA
1 AAGAAACCCGGAATAAAGAAATCCA-AGATA
* * *
7480053 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
7480083 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 8 0.16
30 36 0.72
31 6 0.12
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:7480082 original size:15 final size:15
Alignment explanation
Indices: 7480005--7480082 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
7479995 AGAAAACCGA
7480005 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
7480020 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
7480034 AATAAAGAAATCCATA-
1 -ATAAAGAAATCCA-AG
* *
7480050 ATAAAGAGATCCAGG
1 ATAAAGAAATCCAAG
*
7480065 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
7480080 ATA
1 ATA
7480083 CGATACTATG
Statistics
Matches: 48, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
14 3 0.06
15 43 0.90
16 2 0.04
ACGTcount: A:0.55, C:0.15, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:7480941 original size:45 final size:45
Alignment explanation
Indices: 7480877--7480968 Score: 166
Period size: 45 Copynumber: 2.0 Consensus size: 45
7480867 ACCACTTTGG
* *
7480877 TAAGGGGGAGGGGTTGTAGGACCTCTGACTCGACTTTCTTATACA
1 TAAGGGGGAAGGGTTGTAGGACCTCCGACTCGACTTTCTTATACA
7480922 TAAGGGGGAAGGGTTGTAGGACCTCCGACTCGACTTTCTTATACA
1 TAAGGGGGAAGGGTTGTAGGACCTCCGACTCGACTTTCTTATACA
7480967 TA
1 TA
7480969 CACATATGAC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.28
Consensus pattern (45 bp):
TAAGGGGGAAGGGTTGTAGGACCTCCGACTCGACTTTCTTATACA
Found at i:7483107 original size:46 final size:47
Alignment explanation
Indices: 7483040--7483311 Score: 234
Period size: 46 Copynumber: 5.7 Consensus size: 47
7483030 TGTAACCCGC
*
7483040 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGCAT
* * * * *
7483086 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCG-GATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACG-TTCGCAT
* *** *
7483132 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCG-GACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGCAT
* * *
7483179 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GA-GAC--GTTCGCAT
* * * * * *
7483229 CTAACGAACTCAGACTC-AACTCAACTCAACGAGTTCG-GACATTCGCAT
1 C-CA-TAAGTGA-ACTCGGACTCAACTCAACGAGTTCGAGACGTTCGCAT
7483277 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
7483312 GATGCTCAAC
Statistics
Matches: 179, Mismatches: 33, Indels: 28
0.75 0.14 0.12
Matches are distributed among these distances:
45 5 0.03
46 92 0.51
47 40 0.22
48 4 0.02
49 4 0.02
50 4 0.02
51 4 0.02
52 22 0.12
53 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACGTTCGCAT
Found at i:7483160 original size:93 final size:93
Alignment explanation
Indices: 7483048--7483316 Score: 405
Period size: 93 Copynumber: 2.8 Consensus size: 93
7483038 GCCCATAAGT
*
7483048 GAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTTCGGA-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
* **
7483112 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGTTCGGATGCCTAGTTACATCTAAC
* *
7483141 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7483206 CGAGTTCGGATGCCTAGTTACATCTAAC
66 CGAGTTCGGATGCCTAGTTACATCTAAC
* *
7483234 GAACTCAGACTCAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAA
1 GAACTC-G----GACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAA
7483299 CTCAACGAGTTCGGATGC
61 CTCAACGAGTTCGGATGC
7483317 TCAACCATCC
Statistics
Matches: 160, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
93 90 0.56
94 3 0.02
98 67 0.42
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTAAC
Found at i:7483163 original size:47 final size:47
Alignment explanation
Indices: 7483094--7483253 Score: 191
Period size: 47 Copynumber: 3.4 Consensus size: 47
7483084 ATCCATAAGT
* * *
7483094 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTATC
* * * * * *
7483141 GAACTCGGACTCAACTCAACGAGTTCGGACG-CTCGCATCCAT-AAGT-
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTA-TC
*
7483187 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTAAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTATC
7483234 GAACTCAGACTCAACTCAAC
1 GAACTCAGACTCAACTCAAC
7483254 TCAACGAGTT
Statistics
Matches: 94, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
46 36 0.38
47 58 0.62
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTATC
Found at i:7487821 original size:32 final size:32
Alignment explanation
Indices: 7487785--7487850 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
7487775 AGCTTATGTT
7487785 TCTTGGCAGTTAAAGCCACATGAAAAGAATAA
1 TCTTGGCAGTTAAAGCCACATGAAAAGAATAA
7487817 TCTTGGCAGTTAAAGCCACATGAAAAGAATAA
1 TCTTGGCAGTTAAAGCCACATGAAAAGAATAA
7487849 TC
1 TC
7487851 ATACTCATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (32 bp):
TCTTGGCAGTTAAAGCCACATGAAAAGAATAA
Found at i:7492614 original size:31 final size:31
Alignment explanation
Indices: 7492579--7492641 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
7492569 CATAGTTCGT
7492579 AGAAACCAAAGAGAAATAAGGCGAAGCTTAA
1 AGAAACCAAAGAGAAATAAGGCGAAGCTTAA
7492610 AGAAACCAAAGAGAAATAAGGCGAAGCTTAA
1 AGAAACCAAAGAGAAATAAGGCGAAGCTTAA
7492641 A
1 A
7492642 ATACACAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.56, C:0.13, G:0.22, T:0.10
Consensus pattern (31 bp):
AGAAACCAAAGAGAAATAAGGCGAAGCTTAA
Found at i:7499537 original size:120 final size:120
Alignment explanation
Indices: 7499398--7499637 Score: 462
Period size: 120 Copynumber: 2.0 Consensus size: 120
7499388 TGTGTTTGAG
7499398 TTTCGCAAATGAGAATGAAATATGAATGTGCCATGAATTATTGTTAGATGTGCATGATTAATTGA
1 TTTCGCAAATGAGAATGAAATATGAATGTGCCATGAATTATTGTTAGATGTGCATGATTAATTGA
* *
7499463 ATGTTGTCTGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTA
66 ATGCTGTCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTA
7499518 TTTCGCAAATGAGAATGAAATATGAATGTGCCATGAATTATTGTTAGATGTGCATGATTAATTGA
1 TTTCGCAAATGAGAATGAAATATGAATGTGCCATGAATTATTGTTAGATGTGCATGATTAATTGA
7499583 ATGCTGTCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTA
66 ATGCTGTCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTA
7499638 AGATCCGAAG
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 118 1.00
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (120 bp):
TTTCGCAAATGAGAATGAAATATGAATGTGCCATGAATTATTGTTAGATGTGCATGATTAATTGA
ATGCTGTCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTA
Found at i:7499726 original size:80 final size:79
Alignment explanation
Indices: 7499642--7499813 Score: 193
Period size: 79 Copynumber: 2.2 Consensus size: 79
7499632 GGACTAAGAT
* *
7499642 CCGAAGGCTTTTGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATGACAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
7499706 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * ** * * * *
7499722 CCGAAGACATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
7499787 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
7499801 CCGAAGGCATTTG
1 CCGAAGGCATTTG
7499814 AACGAGGAGC
Statistics
Matches: 75, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
79 37 0.49
80 35 0.47
81 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:7499793 original size:39 final size:39
Alignment explanation
Indices: 7499589--7499811 Score: 189
Period size: 40 Copynumber: 5.6 Consensus size: 39
7499579 TTGAATGCTG
* * * * * *
7499589 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
7499629 TCCGGACTAAGAT-CCGAAGGCTTTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGC-ATTGTGCGAGTTACTAAA
* * *
7499668 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
7499709 TCCGGGTTAAGTCCCGAAGACATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* *
7499749 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
7499788 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
7499812 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 39 0.25
40 103 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:7499831 original size:79 final size:80
Alignment explanation
Indices: 7499669--7499846 Score: 189
Period size: 79 Copynumber: 2.2 Consensus size: 80
7499659 AGATACAAAT
* * * *
7499669 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGACATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGACATTC
** ** *
7499734 GTGCGAGTTGTTAAA
66 GAACGAGGAGCTAAA
* * * * * *
7499749 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGACATTC
*
7499813 GAACGAGGAGCTATA
66 GAACGAGGAGCTAAA
*
7499828 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
7499847 TACGTGATTT
Statistics
Matches: 80, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 14 0.17
79 48 0.60
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGACATTC
GAACGAGGAGCTAAA
Found at i:7504845 original size:59 final size:59
Alignment explanation
Indices: 7504753--7504869 Score: 225
Period size: 59 Copynumber: 2.0 Consensus size: 59
7504743 GGCACCTTAT
*
7504753 GAGGCTTTGTACGGTCGTAAATGCCGTACACCATTGTTTTGGACCGAGCTTGGTGAAGC
1 GAGGCTTTGTACGGTCGTAAATGCCGTACACCATTGTTTTGGACCGAGCTCGGTGAAGC
7504812 GAGGCTTTGTACGGTCGTAAATGCCGTACACCATTGTTTTGGACCGAGCTCGGTGAAG
1 GAGGCTTTGTACGGTCGTAAATGCCGTACACCATTGTTTTGGACCGAGCTCGGTGAAG
7504870 GTAAAATTTT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (59 bp):
GAGGCTTTGTACGGTCGTAAATGCCGTACACCATTGTTTTGGACCGAGCTCGGTGAAGC
Found at i:7507043 original size:40 final size:39
Alignment explanation
Indices: 7507012--7507221 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
7507002 GGACTAAGAT
* *
7507012 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
7507052 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
7507092 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
7507132 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
7507172 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
7507211 CCGAAGGCATT
1 CCGAAGGCATT
7507222 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:7507175 original size:120 final size:120
Alignment explanation
Indices: 7506959--7507221 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
7506949 TTGAATGCTG
* *
7506959 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
7507023 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
7507079 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
7507142 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
7507198 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
7507222 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:7507241 original size:79 final size:80
Alignment explanation
Indices: 7506960--7507256 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
7506950 TGAATGCTGT
* ** * * * **
7506960 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
7507023 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
7507040 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
7507104 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
7507120 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
7507184 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
7507199 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
7507257 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:7519092 original size:12 final size:12
Alignment explanation
Indices: 7519075--7519100 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7519065 TACACTTGAA
7519075 GTGTACAAATCT
1 GTGTACAAATCT
7519087 GTGTACAAATCT
1 GTGTACAAATCT
7519099 GT
1 GT
7519101 AAACCGTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (12 bp):
GTGTACAAATCT
Found at i:7519367 original size:25 final size:24
Alignment explanation
Indices: 7519329--7519381 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
7519319 ATGTTCAAGC
*
7519329 GAGCCATATTAGGAAGCTCAAAAA
1 GAGCCATATCAGGAAGCTCAAAAA
* *
7519353 GAGCCTATATCAGGACGCTCATAAA
1 GAGCC-ATATCAGGAAGCTCAAAAA
7519378 GAGC
1 GAGC
7519382 TACGTTTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.17
Consensus pattern (24 bp):
GAGCCATATCAGGAAGCTCAAAAA
Found at i:7519888 original size:21 final size:20
Alignment explanation
Indices: 7519858--7519902 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
7519848 AATGAAGTTA
7519858 ACATTAATTTAATAAAATTC
1 ACATTAATTTAATAAAATTC
* **
7519878 ACATTCAATTTCATTCAATTC
1 ACATT-AATTTAATAAAATTC
7519899 ACAT
1 ACAT
7519903 CTTAGGAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.40
Consensus pattern (20 bp):
ACATTAATTTAATAAAATTC
Found at i:7522055 original size:21 final size:23
Alignment explanation
Indices: 7522030--7522071 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
7522020 TTGTATAATA
*
7522030 TCTTCTATACA-A-ATTTTGAAT
1 TCTTCGATACACATATTTTGAAT
7522051 TCTTCGATACACATATTTTGA
1 TCTTCGATACACATATTTTGA
7522072 CTCTGAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 1 0.06
23 7 0.39
ACGTcount: A:0.31, C:0.17, G:0.07, T:0.45
Consensus pattern (23 bp):
TCTTCGATACACATATTTTGAAT
Found at i:7527045 original size:157 final size:158
Alignment explanation
Indices: 7526822--7527132 Score: 543
Period size: 157 Copynumber: 2.0 Consensus size: 158
7526812 GCGATTTCAT
*
7526822 GGTCTAAGGCCGATTTGGACCATGATGGCTCGAAATGGGCCATGTGGGCCCCCCGAGCTCGTGGG
1 GGTCTAAGGCCGATTTGGACCATGATGGCTCGAAATGGGCCATGTGGGCCCCACGAGCTCGTGGG
* *
7526887 CCCCACACGAGTAAACCACACGAGCATGTGGAGATTGTTGGGCAGGCTGTGTAAACTACGCGGCC
66 CCCCACACGAGTAAACCACACGAACATGTGGAGATTGTTGGGCAGGCTGTGTAAACCACGCGGCC
7526952 AAGGCTATTTTTGGCCTTGTGGGCACGA
131 AAGGCTATTTTTGGCCTTGTGGGCACGA
* * *
7526980 GGTCTAAGGCTGATTTGGGCCATGATGGCTCG-AATGGGCCGTGTGGGCCCCACGAGCTCGTGGG
1 GGTCTAAGGCCGATTTGGACCATGATGGCTCGAAATGGGCCATGTGGGCCCCACGAGCTCGTGGG
*
7527044 CCCCACACGGGTAAACCACACGAACATGTGGAGATTGTTGGGCAGGCTGTGTAAACCACGCGGCC
66 CCCCACACGAGTAAACCACACGAACATGTGGAGATTGTTGGGCAGGCTGTGTAAACCACGCGGCC
*
7527109 AAGGCTATTTTTGGCCTTTTGGGC
131 AAGGCTATTTTTGGCCTTGTGGGC
7527133 CACATAAGTT
Statistics
Matches: 145, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
157 115 0.79
158 30 0.21
ACGTcount: A:0.20, C:0.25, G:0.33, T:0.22
Consensus pattern (158 bp):
GGTCTAAGGCCGATTTGGACCATGATGGCTCGAAATGGGCCATGTGGGCCCCACGAGCTCGTGGG
CCCCACACGAGTAAACCACACGAACATGTGGAGATTGTTGGGCAGGCTGTGTAAACCACGCGGCC
AAGGCTATTTTTGGCCTTGTGGGCACGA
Found at i:7536475 original size:42 final size:42
Alignment explanation
Indices: 7536405--7536493 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
7536395 TGCTGGGAAA
* * * *
7536405 ACACGGCCACACCACATGTTCGTACACATGGCCGTGTGTCAC
1 ACACGACCAAACCACACGTCCGTACACATGGCCGTGTGTCAC
* *
7536447 ACACGACCAAACCACACGTCCGTGCACATGGTCGTGTGTCAC
1 ACACGACCAAACCACACGTCCGTACACATGGCCGTGTGTCAC
7536489 ACACG
1 ACACG
7536494 GTTGAGACAC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.26, C:0.36, G:0.21, T:0.17
Consensus pattern (42 bp):
ACACGACCAAACCACACGTCCGTACACATGGCCGTGTGTCAC
Found at i:7541405 original size:47 final size:47
Alignment explanation
Indices: 7541345--7541474 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 47
7541335 GTGTGAATAA
* * * *
7541345 TACCTAGATTTGGCTACGGGCCATGGTATAGGT-TTTTAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCT-GAGAGAAGT
* * *
7541392 TACCTTGATTTGGCTACGGGCCATGGTATAGATACTCTGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGAGAGAAGT
*
7541439 TACCTTGATTTGGCTACGGGCCATTGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
7541475 ATAAAACAGA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 71 0.97
48 2 0.03
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGAGAGAAGT
Found at i:7560373 original size:21 final size:20
Alignment explanation
Indices: 7560344--7560388 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
7560334 AACAAATTTA
7560344 ACATTAATTTAATAAAATTC
1 ACATTAATTTAATAAAATTC
* **
7560364 ACATTCAATTTCATTCAATTC
1 ACATT-AATTTAATAAAATTC
7560385 ACAT
1 ACAT
7560389 CTTAGGAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.40
Consensus pattern (20 bp):
ACATTAATTTAATAAAATTC
Found at i:7560833 original size:20 final size:18
Alignment explanation
Indices: 7560793--7560836 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
7560783 TGTGGGTAGA
*
7560793 CCGTGTGATTACACACAC
1 CCGTGTGATTAAACACAC
*
7560811 CCGTGTGACTTCAAACACGC
1 CCGTGTGA-TT-AAACACAC
7560831 CCGTGT
1 CCGTGT
7560837 CCTCAACCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.36
19 2 0.09
20 12 0.55
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (18 bp):
CCGTGTGATTAAACACAC
Found at i:7564145 original size:29 final size:29
Alignment explanation
Indices: 7564082--7564191 Score: 109
Period size: 29 Copynumber: 3.9 Consensus size: 29
7564072 ACATACATGT
*
7564082 ATATGGCCCACTT-GGCCC--ATCTCATTC
1 ATATGGCCCA-TTAGGCCCAAATCACATTC
* * *
7564109 ATATGGCCCATCAGGCCCAATTCATATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* * * *
7564138 ATATGGCCTATTAGTCCCAAATCACCTTT
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
7564167 ATATGGCCCGTTAGGCCCAAATCAC
1 ATATGGCCCATTAGGCCCAAATCAC
7564192 CTTATATTCA
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
26 1 0.02
27 15 0.23
29 50 0.76
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:7565705 original size:16 final size:16
Alignment explanation
Indices: 7565680--7565712 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7565670 AAAAATTTAA
*
7565680 GATTTTGGGATTTTTG
1 GATTTCGGGATTTTTG
7565696 GATTTCGGGATTTTTG
1 GATTTCGGGATTTTTG
7565712 G
1 G
7565713 GGTGTTACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.03, G:0.33, T:0.52
Consensus pattern (16 bp):
GATTTCGGGATTTTTG
Found at i:7577044 original size:21 final size:20
Alignment explanation
Indices: 7577016--7577054 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
7577006 ACCTTAAAAT
*
7577016 AGGGAACACGTCCGTGTGGA
1 AGGGAACACGCCCGTGTGGA
*
7577036 AGGGTAACATGCCCGTGTG
1 AGGG-AACACGCCCGTGTG
7577055 ACCATTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.23, C:0.21, G:0.38, T:0.18
Consensus pattern (20 bp):
AGGGAACACGCCCGTGTGGA
Found at i:7578217 original size:49 final size:48
Alignment explanation
Indices: 7578159--7578471 Score: 167
Period size: 46 Copynumber: 6.6 Consensus size: 48
7578149 GTAAAGTGTC
* *
7578159 GATGGCATGTCCCAGACATGGTCTCACACTGGCTATCATCTTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTTCGA-GCT
* * * * *
7578208 GATGCCATGTCCCAGGCATGGTCTTACACTAGCTTTCA-CATAAC-ATTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATC-T-TCGA--GCT
7578258 GATGCCATGTCCCAGACATGGTCTTACACTGGC-A-CATC-TCGTAGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTTCG-AGCT
** * * * *
7578304 GATG-CATGTCCCAGACA-CCTATTATACTGGCT-TACGTC-CCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-CATCTTCGA-GCT
*** * * *
7578350 GATG-CATGTTTTAGACAT-GTCTTATACTAGC-ACTCATC-TCAATG-T
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATCTTCGA-GCT
* * * * *
7578395 CGATGCCATGTCCGAGACATGGTCTTACACTGGGTCTCATAATGT-G-GCC
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-CT-TCGAGCT
7578444 GATG-CATGTCCCAGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
7578472 AGCTCACACA
Statistics
Matches: 203, Mismatches: 40, Indels: 45
0.70 0.14 0.16
Matches are distributed among these distances:
44 10 0.05
45 15 0.07
46 59 0.29
47 25 0.12
48 23 0.11
49 36 0.18
50 34 0.17
51 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTTCGAGCT
Found at i:7582145 original size:34 final size:35
Alignment explanation
Indices: 7582057--7582146 Score: 119
Period size: 35 Copynumber: 2.6 Consensus size: 35
7582047 CATAATAGCC
* *
7582057 AGTCCAACCAAAACACACCAATGCTCAAAAGGGCT
1 AGTCCAACCAAAACACACCAATACTCAAAAGAGCT
** *
7582092 AGTCCTTCCGAAACACACCAATACTCAAAAGAGCT
1 AGTCCAACCAAAACACACCAATACTCAAAAGAGCT
*
7582127 AGTCC-ACTAAAACACACCAA
1 AGTCCAACCAAAACACACCAA
7582147 ACAAAGAGTA
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
34 12 0.26
35 35 0.74
ACGTcount: A:0.43, C:0.32, G:0.11, T:0.13
Consensus pattern (35 bp):
AGTCCAACCAAAACACACCAATACTCAAAAGAGCT
Found at i:7582864 original size:46 final size:46
Alignment explanation
Indices: 7582796--7582886 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
7582786 TATATATACA
* * *
7582796 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGACTTTACCACATATC
* * *
7582842 CATCTCATACGCATTTCGCATTAGCCATTCGACTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGACTTTACCACATAT
7582887 ATACACTTCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGACTTTACCACATATC
Found at i:7582931 original size:47 final size:47
Alignment explanation
Indices: 7582904--7583615 Score: 1397
Period size: 47 Copynumber: 15.1 Consensus size: 47
7582894 TCCACGTTCA
*
7582904 TCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCG
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
7582951 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
7582998 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
7583045 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
7583092 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
7583139 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
7583186 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
*
7583233 TCACATTGGCCATTCGGCCTTATCACATATGTGCATGTTCACATTCG
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
7583280 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
7583327 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
7583374 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
7583421 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
7583468 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
7583515 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
*
7583562 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCA
1 TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
7583609 TCACATT
1 TCACATT
7583616 AAATCCTAAA
Statistics
Matches: 661, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 661 1.00
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (47 bp):
TCACATTGGACATTCGGCCTTATCACATATGTGCATGTTCACATTCG
Found at i:7588613 original size:49 final size:50
Alignment explanation
Indices: 7588531--7588763 Score: 247
Period size: 49 Copynumber: 4.7 Consensus size: 50
7588521 ATCTATTGTG
* * *
7588531 AGGTCACGTGTGTAGTACTAAGTGTAGGATACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
7588581 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * * **
7588631 CGATCACGTGTGTAGTACTAAGTTCAGGCTACTACATGTATCAGG-TGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGGATAATT
* * *
7588681 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
7588731 -GGTCGCATGTGTAGTACTAAGTGCGGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
7588764 TGCGTACCAG
Statistics
Matches: 149, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
49 72 0.48
50 42 0.28
51 33 0.22
52 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:7588712 original size:101 final size:98
Alignment explanation
Indices: 7588534--7588763 Score: 248
Period size: 101 Copynumber: 2.3 Consensus size: 98
7588524 TATTGTGAGG
* * * *
7588534 TCACGTGTGTAGTACTAAGTGT-AGGATACTACGTGTACCGGATAATTGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGT-TCAGGCTACTACATGTACAGGATAATTGGTCACATGTGTAGTAC
* *
7588598 TAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
65 TAAGTGCAAGCTACTACGCGTACCCGATAA-TT-GA
** *
7588634 TCACGTGTGTAGTACTAAGTTCAGGCTACTACATGTATCAGG-TGGTTAGGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTTCAGGCTACTACATGTA-CAGGATAATT-GGTCACATGTGTAGTA
* ** *
7588698 CTAAGTGCAAGCTACTACGTGTACTGGATAATTGG
64 CTAAGTGCAAGCTACTACGCGTACCCGATAATTGA
* * * *
7588733 TCGCATGTGTAGTACTAAGTGCGGGCTACTA
1 TCACGTGTGTAGTACTAAGTTCAGGCTACTA
7588764 TGCGTACCAG
Statistics
Matches: 110, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
99 29 0.26
100 38 0.35
101 43 0.39
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTTCAGGCTACTACATGTACAGGATAATTGGTCACATGTGTAGTACT
AAGTGCAAGCTACTACGCGTACCCGATAATTGA
Found at i:7593859 original size:49 final size:49
Alignment explanation
Indices: 7593770--7593992 Score: 223
Period size: 49 Copynumber: 4.5 Consensus size: 49
7593760 TCTATTGTGA
* * * *
7593770 GGTCACGTGTGTAGTACTAAATGTAGGATACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* ** * *
7593819 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTGTGCGTACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TT
* * * * * *
7593870 GATCACGTGTGTAGTCCTAAGTTCAGGCTACTACGTGTATCAGG-TGATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGGATAATT
* * * *
7593919 AGGTCACGTGTGTAGTACTAAGTGCAAGCCACTACGTGTACTGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
7593969 GGTCGCATGTGTAGTACTAAGTGC
1 GGTCACATGTGTAGTACTAAGTGC
7593993 GGATGACTAT
Statistics
Matches: 140, Mismatches: 29, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
49 65 0.46
50 38 0.27
51 35 0.25
52 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:7603016 original size:47 final size:47
Alignment explanation
Indices: 7602925--7603018 Score: 111
Period size: 47 Copynumber: 2.0 Consensus size: 47
7602915 TGGGAATGAT
* * *
7602925 GTAGGGACATTGTCATCTATTAACATATGGTTAACCAAATAGTTTAG
1 GTAGGGAAATTGTCATCGATTAACATATGGTTAACCAAACAGTTTAG
* *
7602972 GTAGGGAAATTGTCATCGGTTAA-ACTGTGGTTAACGC-AACAGTTTAG
1 GTAGGGAAATTGTCATCGATTAACA-TATGGTTAAC-CAAACAGTTTAG
7603019 CATGAAGGAC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
46 1 0.03
47 38 0.95
48 1 0.03
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (47 bp):
GTAGGGAAATTGTCATCGATTAACATATGGTTAACCAAACAGTTTAG
Found at i:7606645 original size:39 final size:39
Alignment explanation
Indices: 7606602--7606679 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
7606592 ATCCTCGAGT
* *
7606602 ACCTGGATTACTCTTTCCGACTGACCATCTGTTTGTGGA
1 ACCTGGATTACTCTTTCCCACTAACCATCTGTTTGTGGA
7606641 ACCTGGATTACTCTTTCCCACTAACCATCTGTTTGTGGA
1 ACCTGGATTACTCTTTCCCACTAACCATCTGTTTGTGGA
7606680 TGAAACGCGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (39 bp):
ACCTGGATTACTCTTTCCCACTAACCATCTGTTTGTGGA
Found at i:7616534 original size:16 final size:15
Alignment explanation
Indices: 7616508--7616537 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7616498 ATTGGGTTAA
7616508 AAATTATTTAATTAG
1 AAATTATTTAATTAG
7616523 AAATTAATTTAATTA
1 AAATT-ATTTAATTA
7616538 ATTAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
AAATTATTTAATTAG
Found at i:7617282 original size:17 final size:18
Alignment explanation
Indices: 7617260--7617294 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7617250 TCACATTGAA
7617260 GTGTTTT-AGTGAAAATC
1 GTGTTTTCAGTGAAAATC
*
7617277 GTGTTTTCATTGAAAATC
1 GTGTTTTCAGTGAAAATC
7617295 CGTCTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.43
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAATC
Done.