Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 220 of 290
Found at i:75966511 original size:12 final size:11
Alignment explanation
Indices: 75966482--75966514 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
75966472 GAAATTATAG
75966482 AAAAATATTTA
1 AAAAATATTTA
75966493 AAAAATATTTA
1 AAAAATATTTA
75966504 AAATAATATTT
1 AAA-AATATTT
75966515 TACAAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
AAAAATATTTA
Found at i:75973776 original size:18 final size:20
Alignment explanation
Indices: 75973734--75973776 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
75973724 AACTGAAATA
*
75973734 TAAAATATAAAATATCTTTT
1 TAAAATATAAAATATCTTAT
*
75973754 TAAAATATAACAT-T-TTAT
1 TAAAATATAAAATATCTTAT
75973772 TAAAA
1 TAAAA
75973777 ATTATAGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 8 0.38
19 1 0.05
20 12 0.57
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (20 bp):
TAAAATATAAAATATCTTAT
Found at i:75975300 original size:26 final size:29
Alignment explanation
Indices: 75975259--75975312 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 29
75975249 TTATGCTATT
*
75975259 TTTTTGAATTTATGAA-TT-TTTTATATC
1 TTTTTGAATATATGAATTTATTTTATATC
75975286 TTTTTGAATAT-TGAATTTATTTTATAT
1 TTTTTGAATATATGAATTTATTTTATAT
75975313 TTTAATATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 4 0.17
27 12 0.50
28 8 0.33
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (29 bp):
TTTTTGAATATATGAATTTATTTTATATC
Found at i:75975315 original size:26 final size:27
Alignment explanation
Indices: 75975259--75975315 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
75975249 TTATGCTATT
* *
75975259 TTTTTGAATTTATGAATTTTTTATATC
1 TTTTTGAATATATGAATTTTTTATATA
75975286 TTTTTGAATAT-TGAATTTATTT-TATA
1 TTTTTGAATATATGAATTT-TTTATATA
75975312 TTTT
1 TTTT
75975316 AATATTTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.26, C:0.02, G:0.07, T:0.65
Consensus pattern (27 bp):
TTTTTGAATATATGAATTTTTTATATA
Found at i:75979367 original size:42 final size:41
Alignment explanation
Indices: 75979255--75979367 Score: 111
Period size: 44 Copynumber: 2.7 Consensus size: 41
75979245 TTCCAATGTG
* * **
75979255 TGATTTCATGTAAGACCATGTCTAGGACGTTGGCATCGATT
1 TGATTTCATGTAAGACCATGTCTGGGACATCAGCATCGATT
*
75979296 TGAGATTT-ATGTGCAAGACTATGTCTGGGACATCAGCATCGCATT
1 T--GATTTCATGT--AAGACCATGTCTGGGACATCAGCATCG-ATT
* *
75979341 TGATTTCATGTAAGACCCTGTTTGGGA
1 TGATTTCATGTAAGACCATGTCTGGGA
75979368 TAGTGGCATT
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
41 1 0.02
42 17 0.29
43 10 0.17
44 26 0.45
45 4 0.07
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (41 bp):
TGATTTCATGTAAGACCATGTCTGGGACATCAGCATCGATT
Found at i:75987048 original size:43 final size:43
Alignment explanation
Indices: 75986979--75987142 Score: 149
Period size: 43 Copynumber: 3.9 Consensus size: 43
75986969 TTCCGATGTG
* * *
75986979 TGATTT-CATGTAAGACCACGTTTGGGACGTTGGCATCG-ATT
1 TGATTTACGTGTAAGACCATGTCTGGGACGTTGGCATCGTATT
* * * *
75987020 TGAGTTTACGTGTAAGACCATGTCTGGGACATCGACATCGTTTT
1 TGA-TTTACGTGTAAGACCATGTCTGGGACGTTGGCATCGTATT
* *
75987064 TGATTT-CGTGTAAGACCTTGGCTGGGACAG-TGGCATCGATATT
1 TGATTTACGTGTAAGACCATGTCTGGGAC-GTTGGCATCG-TATT
* * **
75987107 TGA-TTACATGTAAGACCATATCCAGGACGTTGGCAT
1 TGATTTACGTGTAAGACCATGTCTGGGACGTTGGCAT
75987143 TAAACTAGCT
Statistics
Matches: 97, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 3 0.03
42 32 0.33
43 57 0.59
44 5 0.05
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
TGATTTACGTGTAAGACCATGTCTGGGACGTTGGCATCGTATT
Found at i:76001561 original size:6 final size:6
Alignment explanation
Indices: 76001546--76001589 Score: 70
Period size: 6 Copynumber: 7.3 Consensus size: 6
76001536 ACTGAGTGCA
* *
76001546 TTTATC TTTATT TTTATT TTTATT TTTATT TTTATG TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
76001590 GTTTTCATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:76012868 original size:53 final size:54
Alignment explanation
Indices: 76012800--76012999 Score: 242
Period size: 55 Copynumber: 3.7 Consensus size: 54
76012790 TTTCCTTTTT
* * * *
76012800 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* *
76012853 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA
* * * * *
76012907 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTACTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * *
76012962 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATG
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATG
76013000 ATAACCTTAT
Statistics
Matches: 127, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
52 2 0.02
53 44 0.35
54 35 0.28
55 45 0.35
56 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:76013042 original size:47 final size:47
Alignment explanation
Indices: 76012986--76013107 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
76012976 CATGCCTTGG
* * *
76012986 CATGGTCTTACATGATAACCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
76013033 GATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
76013080 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
76013108 GTGCCAATGC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:76028487 original size:49 final size:47
Alignment explanation
Indices: 76028421--76028527 Score: 142
Period size: 49 Copynumber: 2.2 Consensus size: 47
76028411 GAGATGTGTT
*
76028421 AGTGGAAGACCTATCTGGGACATGGCATAAACACAGATAAGTGAGAGAC
1 AGTGTAAGACCTATCTGGGACATGGCATAAACACAGAT--GTGAGAGAC
* * ** *
76028470 AGTGTAAGACCTGTCTGGGACATGGCATCAACTTAGATGTGAGAGCC
1 AGTGTAAGACCTATCTGGGACATGGCATAAACACAGATGTGAGAGAC
76028517 AGTGTAAGACC
1 AGTGTAAGACC
76028528 ATGTTTGGAA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
47 19 0.37
49 33 0.63
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.20
Consensus pattern (47 bp):
AGTGTAAGACCTATCTGGGACATGGCATAAACACAGATGTGAGAGAC
Found at i:76032823 original size:38 final size:38
Alignment explanation
Indices: 76032731--76032833 Score: 134
Period size: 38 Copynumber: 2.7 Consensus size: 38
76032721 AGCTTAAACA
* * ** * *
76032731 CCCGCAGGCTTCGTCCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTAGTGCTGGTATTATATCAGGGATAAAT
*
76032769 CCCGCAGGCTTTGTGCTGGTATTATATCAGGGATAAAT
1 CCCGCAGGCTTAGTGCTGGTATTATATCAGGGATAAAT
*
76032807 CCCGCAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTAGTGCTGGTATTATAT
76032834 TCGGGCCTTC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 57 1.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTAGTGCTGGTATTATATCAGGGATAAAT
Found at i:76032879 original size:43 final size:43
Alignment explanation
Indices: 76032831--76033105 Score: 496
Period size: 43 Copynumber: 6.4 Consensus size: 43
76032821 GCTGGTATTA
76032831 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
76032874 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
76032917 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
76032960 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
76033003 TATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
76033046 TATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
76033089 TATTCGGGCCTTCGTGC
1 TATTCGGGCCTTCGTGC
76033106 TGGTGATGTG
Statistics
Matches: 224, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 224 1.00
ACGTcount: A:0.11, C:0.26, G:0.33, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:76033111 original size:27 final size:27
Alignment explanation
Indices: 76033071--76033133 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
76033061 GCCTAGCAGG
76033071 CTTCGTGCCAGTGATGTATATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
** *
76033098 CTTCGTGCTGGTGATGTGTATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
76033125 CTTCGTGCC
1 CTTCGTGCC
76033134 TAGTAGGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.24, G:0.32, T:0.35
Consensus pattern (27 bp):
CTTCGTGCCAGTGATGTATATTCGGGC
Found at i:76033126 original size:70 final size:70
Alignment explanation
Indices: 76033038--76033172 Score: 234
Period size: 70 Copynumber: 1.9 Consensus size: 70
76033028 CTTCATGCCA
*
76033038 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGCCTTCG
1 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
76033103 TGCTG
66 TGCTG
* * *
76033108 GTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATTCGGGCCTTCG
1 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
76033173 CGCCTAGCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.12, C:0.23, G:0.33, T:0.33
Consensus pattern (70 bp):
GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
TGCTG
Found at i:76033169 original size:43 final size:43
Alignment explanation
Indices: 76033108--76033218 Score: 186
Period size: 43 Copynumber: 2.6 Consensus size: 43
76033098 CTTCGTGCTG
*
76033108 GTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCA
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
* *
76033151 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCA
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
*
76033194 GTGATGTATATTCGGGCCTTCGTGC
1 GTGATGTGTATTCGGGCCTTCGTGC
76033219 TGGTGATGTG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.13, C:0.24, G:0.32, T:0.32
Consensus pattern (43 bp):
GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
Found at i:76033224 original size:27 final size:27
Alignment explanation
Indices: 76033184--76033246 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
76033174 GCCTAGCAGG
76033184 CTTCGTGCCAGTGATGTATATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
** *
76033211 CTTCGTGCTGGTGATGTGTATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
76033238 CTTCGTGCC
1 CTTCGTGCC
76033247 TAGTAGGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.24, G:0.32, T:0.35
Consensus pattern (27 bp):
CTTCGTGCCAGTGATGTATATTCGGGC
Found at i:76033225 original size:70 final size:70
Alignment explanation
Indices: 76033151--76033285 Score: 234
Period size: 70 Copynumber: 1.9 Consensus size: 70
76033141 CTTCATGCCA
*
76033151 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGCCTTCG
1 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
76033216 TGCTG
66 TGCTG
* * *
76033221 GTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATTCGGGCCTTCG
1 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
76033286 CGCCTAGCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.12, C:0.23, G:0.33, T:0.33
Consensus pattern (70 bp):
GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
TGCTG
Found at i:76033282 original size:43 final size:43
Alignment explanation
Indices: 76033221--76033331 Score: 186
Period size: 43 Copynumber: 2.6 Consensus size: 43
76033211 CTTCGTGCTG
*
76033221 GTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCA
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
* *
76033264 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCA
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
*
76033307 GTGATGTATATTCGGGCCTTCGTGC
1 GTGATGTGTATTCGGGCCTTCGTGC
76033332 TGGTGATGTG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.13, C:0.24, G:0.32, T:0.32
Consensus pattern (43 bp):
GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
Found at i:76033337 original size:27 final size:27
Alignment explanation
Indices: 76033297--76033359 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
76033287 GCCTAGCAGG
76033297 CTTCGTGCCAGTGATGTATATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
** *
76033324 CTTCGTGCTGGTGATGTGTATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
76033351 CTTCGTGCC
1 CTTCGTGCC
76033360 TAGTAGGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.24, G:0.32, T:0.35
Consensus pattern (27 bp):
CTTCGTGCCAGTGATGTATATTCGGGC
Found at i:76033338 original size:70 final size:70
Alignment explanation
Indices: 76033264--76033398 Score: 234
Period size: 70 Copynumber: 1.9 Consensus size: 70
76033254 CTTCATGCCA
*
76033264 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGCCTTCG
1 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
76033329 TGCTG
66 TGCTG
* * *
76033334 GTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATTCGGGCCTTCG
1 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
76033399 CGCCTAGCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.12, C:0.23, G:0.33, T:0.33
Consensus pattern (70 bp):
GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
TGCTG
Found at i:76033395 original size:43 final size:43
Alignment explanation
Indices: 76033334--76033444 Score: 186
Period size: 43 Copynumber: 2.6 Consensus size: 43
76033324 CTTCGTGCTG
*
76033334 GTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCA
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
* *
76033377 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCA
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
*
76033420 GTGATGTATATTCGGGCCTTCGTGC
1 GTGATGTGTATTCGGGCCTTCGTGC
76033445 TGGTGATGTG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.13, C:0.24, G:0.32, T:0.32
Consensus pattern (43 bp):
GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
Found at i:76033450 original size:27 final size:27
Alignment explanation
Indices: 76033410--76033472 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
76033400 GCCTAGCAGG
76033410 CTTCGTGCCAGTGATGTATATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
** *
76033437 CTTCGTGCTGGTGATGTGTATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
76033464 CTTCGTGCC
1 CTTCGTGCC
76033473 TAGTAGGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.24, G:0.32, T:0.35
Consensus pattern (27 bp):
CTTCGTGCCAGTGATGTATATTCGGGC
Found at i:76033451 original size:70 final size:70
Alignment explanation
Indices: 76033377--76033511 Score: 234
Period size: 70 Copynumber: 1.9 Consensus size: 70
76033367 CTTCATGCCA
*
76033377 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGCCTTCG
1 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
76033442 TGCTG
66 TGCTG
* * *
76033447 GTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATTCGGGCCTTCG
1 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
76033512 CGCCTAGCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.12, C:0.23, G:0.33, T:0.33
Consensus pattern (70 bp):
GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
TGCTG
Found at i:76033508 original size:43 final size:43
Alignment explanation
Indices: 76033447--76033557 Score: 186
Period size: 43 Copynumber: 2.6 Consensus size: 43
76033437 CTTCGTGCTG
*
76033447 GTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCA
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
* *
76033490 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCA
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
*
76033533 GTGATGTATATTCGGGCCTTCGTGC
1 GTGATGTGTATTCGGGCCTTCGTGC
76033558 TGGTGATGTG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.13, C:0.24, G:0.32, T:0.32
Consensus pattern (43 bp):
GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
Found at i:76033563 original size:27 final size:27
Alignment explanation
Indices: 76033523--76033585 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
76033513 GCCTAGCAGG
76033523 CTTCGTGCCAGTGATGTATATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
** *
76033550 CTTCGTGCTGGTGATGTGTATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
76033577 CTTCGTGCC
1 CTTCGTGCC
76033586 TAGTAGGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.24, G:0.32, T:0.35
Consensus pattern (27 bp):
CTTCGTGCCAGTGATGTATATTCGGGC
Found at i:76033564 original size:70 final size:70
Alignment explanation
Indices: 76033490--76033624 Score: 234
Period size: 70 Copynumber: 1.9 Consensus size: 70
76033480 CTTCATGCCA
*
76033490 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGCCTTCG
1 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
76033555 TGCTG
66 TGCTG
* * *
76033560 GTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATTCGGGCCTTCG
1 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
76033625 CGCCTAGCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.12, C:0.23, G:0.33, T:0.33
Consensus pattern (70 bp):
GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
TGCTG
Found at i:76033621 original size:43 final size:43
Alignment explanation
Indices: 76033560--76033670 Score: 186
Period size: 43 Copynumber: 2.6 Consensus size: 43
76033550 CTTCGTGCTG
*
76033560 GTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCA
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
* *
76033603 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCA
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
*
76033646 GTGATGTATATTCGGGCCTTCGTGC
1 GTGATGTGTATTCGGGCCTTCGTGC
76033671 TGGTGATGTG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.13, C:0.24, G:0.32, T:0.32
Consensus pattern (43 bp):
GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
Found at i:76033676 original size:27 final size:27
Alignment explanation
Indices: 76033636--76033698 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
76033626 GCCTAGCAGG
76033636 CTTCGTGCCAGTGATGTATATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
** *
76033663 CTTCGTGCTGGTGATGTGTATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
76033690 CTTCGTGCC
1 CTTCGTGCC
76033699 TAGTAGGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.24, G:0.32, T:0.35
Consensus pattern (27 bp):
CTTCGTGCCAGTGATGTATATTCGGGC
Found at i:76033677 original size:70 final size:70
Alignment explanation
Indices: 76033603--76033737 Score: 234
Period size: 70 Copynumber: 1.9 Consensus size: 70
76033593 CTTCATGCCA
*
76033603 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGCCTTCG
1 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
76033668 TGCTG
66 TGCTG
* * *
76033673 GTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATTCGGGCCTTCG
1 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
76033738 CGCCTAGCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.12, C:0.23, G:0.33, T:0.33
Consensus pattern (70 bp):
GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
TGCTG
Found at i:76033734 original size:43 final size:43
Alignment explanation
Indices: 76033673--76033783 Score: 186
Period size: 43 Copynumber: 2.6 Consensus size: 43
76033663 CTTCGTGCTG
*
76033673 GTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCA
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
* *
76033716 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCA
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
*
76033759 GTGATGTATATTCGGGCCTTCGTGC
1 GTGATGTGTATTCGGGCCTTCGTGC
76033784 TGGTGATGTG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.13, C:0.24, G:0.32, T:0.32
Consensus pattern (43 bp):
GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
Found at i:76033789 original size:27 final size:27
Alignment explanation
Indices: 76033749--76033811 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
76033739 GCCTAGCAGG
76033749 CTTCGTGCCAGTGATGTATATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
** *
76033776 CTTCGTGCTGGTGATGTGTATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
76033803 CTTCGTGCC
1 CTTCGTGCC
76033812 TAGTAGGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.24, G:0.32, T:0.35
Consensus pattern (27 bp):
CTTCGTGCCAGTGATGTATATTCGGGC
Found at i:76033790 original size:70 final size:70
Alignment explanation
Indices: 76033716--76033850 Score: 234
Period size: 70 Copynumber: 1.9 Consensus size: 70
76033706 CTTCATGCCA
*
76033716 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGCCTTCG
1 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
76033781 TGCTG
66 TGCTG
* * *
76033786 GTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATTCGGGCCTTCG
1 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
76033851 CGCCTAGCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.12, C:0.23, G:0.33, T:0.33
Consensus pattern (70 bp):
GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCATGCCAGTGATGTATATTCGGGCCTTCG
TGCTG
Found at i:76033847 original size:43 final size:43
Alignment explanation
Indices: 76033786--76033896 Score: 186
Period size: 43 Copynumber: 2.6 Consensus size: 43
76033776 CTTCGTGCTG
*
76033786 GTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCA
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
* *
76033829 GTGATGTGTATTCGGGCCTTCGCGCCTAGCAGGCTTCGTGCCA
1 GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
*
76033872 GTGATGTATATTCGGGCCTTCGTGC
1 GTGATGTGTATTCGGGCCTTCGTGC
76033897 TGGTGATGTG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.13, C:0.24, G:0.32, T:0.32
Consensus pattern (43 bp):
GTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCA
Found at i:76033902 original size:27 final size:27
Alignment explanation
Indices: 76033862--76033924 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
76033852 GCCTAGCAGG
76033862 CTTCGTGCCAGTGATGTATATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
** *
76033889 CTTCGTGCTGGTGATGTGTATTCGGGC
1 CTTCGTGCCAGTGATGTATATTCGGGC
76033916 CTTCGTGCC
1 CTTCGTGCC
76033925 TAGCAGGCGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.24, G:0.32, T:0.35
Consensus pattern (27 bp):
CTTCGTGCCAGTGATGTATATTCGGGC
Found at i:76033940 original size:113 final size:113
Alignment explanation
Indices: 76032985--76033932 Score: 1878
Period size: 113 Copynumber: 8.4 Consensus size: 113
76032975 GCCTAGCAGG
*
76032985 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
1 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
76033050 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
66 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
76033098 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
1 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
76033163 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
66 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
76033211 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
1 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
76033276 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
66 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
76033324 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
1 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
76033389 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
66 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
76033437 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
1 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
76033502 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
66 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
76033550 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
1 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
76033615 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
66 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
76033663 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
1 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
76033728 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
66 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
76033776 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
1 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
76033841 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
66 CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
*
76033889 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGC
1 CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGC
76033933 GTAATGCCGG
Statistics
Matches: 833, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 833 1.00
ACGTcount: A:0.12, C:0.24, G:0.32, T:0.32
Consensus pattern (113 bp):
CTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATT
CGGGCCTTCGCGCCTAGCAGGCTTCGTGCCAGTGATGTATATTCGGGC
Found at i:76037113 original size:29 final size:28
Alignment explanation
Indices: 76037077--76037154 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
76037067 TCATGAGATT
76037077 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
76037107 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
76037134 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
76037155 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:76037372 original size:174 final size:174
Alignment explanation
Indices: 76037107--76037434 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
76037097 AAATTGTACA
*
76037107 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
76037172 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
76037237 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
76037281 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
76037346 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
76037411 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
76037435 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:76039110 original size:54 final size:54
Alignment explanation
Indices: 76038925--76039230 Score: 413
Period size: 55 Copynumber: 5.6 Consensus size: 54
76038915 AACTTACCAT
* *
76038925 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
*
76038978 TGCCATGCCTT-AGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGA-CATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTCATCAA
* *
76039033 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* * *
76039087 TGCCATGCCTTGTCATGTTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTCATCAA
* * * *
76039142 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* *
76039196 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
76039231 ATCTTACCAA
Statistics
Matches: 223, Mismatches: 21, Indels: 17
0.85 0.08 0.07
Matches are distributed among these distances:
52 3 0.01
53 37 0.17
54 88 0.39
55 90 0.40
56 5 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
Found at i:76039127 original size:109 final size:108
Alignment explanation
Indices: 76038925--76039222 Score: 517
Period size: 109 Copynumber: 2.7 Consensus size: 108
76038915 AACTTACCAT
* *
76038925 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
76038989 AGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
66 -GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
76039033 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
*
76039098 GTCATGTTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
66 G-CATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
* *
76039142 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
76039207 GGCATGGTCTTACATG
66 -GCATGGTCTTACATG
76039223 ATATCCTTAT
Statistics
Matches: 181, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
108 43 0.24
109 137 0.76
110 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
Found at i:76039266 original size:47 final size:47
Alignment explanation
Indices: 76039209--76039330 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
76039199 CATGCCTTGG
* *
76039209 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
76039256 CATGGACTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
76039303 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
76039331 GTGCCAATCA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:76039417 original size:47 final size:45
Alignment explanation
Indices: 76039351--76039452 Score: 116
Period size: 45 Copynumber: 2.2 Consensus size: 45
76039341 CATCTTGATG
* * * *
76039351 TGGTCTTACATGGAGTCCTTAATCAATGCCGATGCCATGTCTTGACA
1 TGGTCTTACAAGGAGTCCTT--GCAATACCAATGCCATGTCTTGACA
**
76039398 TGGTCTTACACAGGA-TCCTTGCCTTACCAATGCCATGTCTTGACA
1 TGGTCTTACA-AGGAGTCCTTGCAATACCAATGCCATGTCTTGACA
76039443 TGGTCTTACA
1 TGGTCTTACA
76039453 TGGTATCCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
45 30 0.62
47 15 0.31
48 3 0.06
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (45 bp):
TGGTCTTACAAGGAGTCCTTGCAATACCAATGCCATGTCTTGACA
Found at i:76040134 original size:29 final size:30
Alignment explanation
Indices: 76040091--76040147 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
76040081 CTAACTCAAA
76040091 CTTTGGCAAAATTACAATTTTGCCCCTAAC
1 CTTTGGCAAAATTACAATTTTGCCCCTAAC
* *
76040121 CTTT-GCAGAATTACGATTTTGCCCCTA
1 CTTTGGCAAAATTACAATTTTGCCCCTA
76040148 GGCTCAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 21 0.84
30 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.35
Consensus pattern (30 bp):
CTTTGGCAAAATTACAATTTTGCCCCTAAC
Found at i:76041719 original size:21 final size:22
Alignment explanation
Indices: 76041679--76041720 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
76041669 ACAAAGAAGG
*
76041679 CCACATGGGCGTGTTGCCCCTT
1 CCACACGGGCGTGTTGCCCCTT
76041701 CCACACGGGCGTG-TGCCCCT
1 CCACACGGGCGTGTTGCCCCT
76041721 ATTTCAAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.10, C:0.40, G:0.29, T:0.21
Consensus pattern (22 bp):
CCACACGGGCGTGTTGCCCCTT
Found at i:76043499 original size:45 final size:45
Alignment explanation
Indices: 76043450--76043542 Score: 159
Period size: 45 Copynumber: 2.1 Consensus size: 45
76043440 TAGCTAAACA
76043450 AAATTAAACTATCATCGTTAATAAAAAAACATCAAAGCAAAATGC
1 AAATTAAACTATCATCGTTAATAAAAAAACATCAAAGCAAAATGC
* * *
76043495 AAATTAAGCTATCATTGTTAATAAAAAAACATCAAAGCAAATTGC
1 AAATTAAACTATCATCGTTAATAAAAAAACATCAAAGCAAAATGC
76043540 AAA
1 AAA
76043543 CATATTGAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.55, C:0.14, G:0.08, T:0.24
Consensus pattern (45 bp):
AAATTAAACTATCATCGTTAATAAAAAAACATCAAAGCAAAATGC
Found at i:76047600 original size:29 final size:29
Alignment explanation
Indices: 76047537--76047604 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
76047527 TAATCAACCG
*
76047537 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
76047566 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
76047595 CGCACACTTA
1 CGCACACTTA
76047605 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:76047774 original size:29 final size:29
Alignment explanation
Indices: 76047711--76047778 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
76047701 TAATCAACCG
76047711 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
76047740 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
76047769 CGCACACTTA
1 CGCACACTTA
76047779 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:76047919 original size:29 final size:30
Alignment explanation
Indices: 76047880--76047958 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
76047870 CTTAATAATC
76047880 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
* *
76047910 AACTCGCACACTTAGTG--TTGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
76047939 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
76047959 ATCTCATGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:76047952 original size:174 final size:174
Alignment explanation
Indices: 76047426--76047926 Score: 957
Period size: 174 Copynumber: 2.9 Consensus size: 174
76047416 AACTCAAGGT
* *
76047426 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
76047491 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
76047556 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
76047600 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
76047665 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
76047730 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
76047774 ACTTACCTTTTCCGCTGTCCAAAATCGACTCAGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
76047839 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
76047904 ACTTTAAACTCGCACACTTAGTG
131 ACTTTAAACTCACACACTTAGTG
76047927 TTGTACAATT
Statistics
Matches: 321, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 321 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:76053475 original size:27 final size:26
Alignment explanation
Indices: 76053413--76053462 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
76053403 AATCATACAT
76053413 CACATAGGGGCAAAACAGTCATTTAC
1 CACATAGGGGCAAAACAGTCATTTAC
* *
76053439 CACATAGGGGCATAATAGTCATTT
1 CACATAGGGGCAAAACAGTCATTT
76053463 TATCAATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (26 bp):
CACATAGGGGCAAAACAGTCATTTAC
Found at i:76062804 original size:27 final size:27
Alignment explanation
Indices: 76062774--76062951 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
76062764 ATATTGAGTC
* * * *
76062774 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
76062801 CGCACACTTAGTGCTACGTAATAAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76062828 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
76062856 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
76062883 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
76062910 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76062937 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76062952 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:76067347 original size:12 final size:12
Alignment explanation
Indices: 76067302--76067352 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
76067292 ACTTAATCAC
76067302 TTTAATATTAAA
1 TTTAATATTAAA
76067314 -TTAATATAGATAAA
1 TTTAATAT---TAAA
76067328 TATT-ATATTAAA
1 T-TTAATATTAAA
76067340 TTTAATATTAAA
1 TTTAATATTAAA
76067352 T
1 T
76067353 CTATTAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
11 9 0.27
12 14 0.42
14 4 0.12
15 4 0.12
16 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:76067757 original size:21 final size:21
Alignment explanation
Indices: 76067718--76067758 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
76067708 TTTGACTTGA
* *
76067718 AAATTAATTTTCAGAAATATC
1 AAATTAATTTTAACAAATATC
*
76067739 AAATTAATTTTAACTAATAT
1 AAATTAATTTTAACAAATAT
76067759 TATTAATTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (21 bp):
AAATTAATTTTAACAAATATC
Found at i:76072818 original size:43 final size:42
Alignment explanation
Indices: 76072750--76072853 Score: 104
Period size: 42 Copynumber: 2.5 Consensus size: 42
76072740 ATGCCAACGC
* * *
76072750 CCCAGAC-GTGGTCTTACATGTAATCAAACT-TCGATGCCATTAT
1 CCCAGACAG-GGTCTTACACGAAATCAAA-TAT-GATGCCAATAT
* * *
76072793 CCTAGACAGGGTCTTACACGAAATCATATATGATGCCAATGT
1 CCCAGACAGGGTCTTACACGAAATCAAATATGATGCCAATAT
*
76072835 CCCAGACATGGTCTTACAC
1 CCCAGACAGGGTCTTACAC
76072854 ATAAAACAGG
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 27 0.53
43 23 0.45
44 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
CCCAGACAGGGTCTTACACGAAATCAAATATGATGCCAATAT
Found at i:76081788 original size:17 final size:18
Alignment explanation
Indices: 76081766--76081799 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
76081756 TTTTGGGCTT
76081766 TGTGGGCC-ACATGGGCG
1 TGTGGGCCTACATGGGCG
76081783 TGTGGGCCTACATGGGC
1 TGTGGGCCTACATGGGC
76081800 TCGCATTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.12, C:0.24, G:0.44, T:0.21
Consensus pattern (18 bp):
TGTGGGCCTACATGGGCG
Found at i:76088572 original size:44 final size:43
Alignment explanation
Indices: 76088520--76088619 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 43
76088510 TGAAAAAAAT
* **
76088520 GCCA-TAAAAGATCAAGACTTTTAGCAGTGTTTTTGGGAAAGGC
1 GCCACTAAAAG-TCAAGACTTTTAGCAGCGTTTGCGGGAAAGGC
* * * *
76088563 GCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGCGGGAAAGGC
1 GCCACTAAAAGTCAAGACTTTTAGCAGCGTTTGCGGGAAAGGC
76088606 GCCACTAAAAGTCA
1 GCCACTAAAAGTCA
76088620 TTGCTTTTAG
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 42 0.88
44 6 0.12
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (43 bp):
GCCACTAAAAGTCAAGACTTTTAGCAGCGTTTGCGGGAAAGGC
Found at i:76088584 original size:43 final size:43
Alignment explanation
Indices: 76088537--76088810 Score: 188
Period size: 43 Copynumber: 6.4 Consensus size: 43
76088527 AAGATCAAGA
* * *
76088537 CTTTTAGCAGTGTTTTTGGGAAAGGCGCCGCTAAAAGTCATGG
1 CTTTTAGCGGCGTTTTCGGGAAAGGCGCCGCTAAAAGTCATGG
* * *
76088580 CTTTTAGCGGCGTTTGCGGGAAAGGCGCCACTAAAAGTCATTG
1 CTTTTAGCGGCGTTTTCGGGAAAGGCGCCGCTAAAAGTCATGG
* * * *
76088623 CTTTTAGTGGCGTTTGTGGGGAAA-GCGTCGTTAAAAGTCATGG
1 CTTTTAGCGGCGTTT-TCGGGAAAGGCGCCGCTAAAAGTCATGG
* * * * * **
76088666 CTTTTAGTGGCGTTTGT-GGTGGAA-GCACCGTTAAAAGACATTA
1 CTTTTAGCGGCGTTT-TCGG-GAAAGGCGCCGCTAAAAGTCATGG
* * *
76088709 CTTTTTA-TGGCGTTTTTGGGTCAAA-GTGCCGCTAAAAGTCAT-G
1 C-TTTTAGCGGCGTTTTCGGG--AAAGGCGCCGCTAAAAGTCATGG
** * *
76088752 CTTTTAG-GGCGCTTTTC-CTACAA-ACGCCGCTAAAAGTCATGT
1 CTTTTAGCGGCG-TTTTCGGGA-AAGGCGCCGCTAAAAGTCATGG
76088794 CTTTTAGCGGCGCTTTT
1 CTTTTAGCGGCG-TTTT
76088811 GTTACAAACA
Statistics
Matches: 189, Mismatches: 31, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
40 1 0.01
41 17 0.09
42 20 0.11
43 125 0.66
44 26 0.14
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (43 bp):
CTTTTAGCGGCGTTTTCGGGAAAGGCGCCGCTAAAAGTCATGG
Found at i:76088701 original size:86 final size:85
Alignment explanation
Indices: 76088554--76088762 Score: 235
Period size: 86 Copynumber: 2.4 Consensus size: 85
76088544 CAGTGTTTTT
* *
76088554 GGGAAAGGCGCCGCTAAAAGTCATGGCTTTTAGCGGCGTTTGCGGGAAAGGCGCCACTAAAAGTC
1 GGGAAA-GCGCCGCTAAAAGTCATGGCTTTTAG-GGCGTTTGCGGGAAAGGCACCACTAAAAGAC
*
76088619 ATTGC-TTTTAGTGGCGTTTGTG
64 ATTACTTTTTA-TGGCGTTTGTG
* * * * **
76088641 GGGAAAGCGTCGTTAAAAGTCATGGCTTTTAGTGGCGTTTGTGGTGGAA-GCACCGTTAAAAGAC
1 GGGAAAGCGCCGCTAAAAGTCATGGCTTTTAG-GGCGTTTGCGG-GAAAGGCACCACTAAAAGAC
*
76088705 ATTACTTTTTATGGCGTTTTTG
64 ATTACTTTTTATGGCGTTTGTG
* *
76088727 GGTCAAAGTGCCGCTAAAAGTCAT-GCTTTTAGGGCG
1 GG-GAAAGCGCCGCTAAAAGTCATGGCTTTTAGGGCG
76088763 CTTTTCCTAC
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
85 4 0.04
86 69 0.66
87 31 0.30
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.30
Consensus pattern (85 bp):
GGGAAAGCGCCGCTAAAAGTCATGGCTTTTAGGGCGTTTGCGGGAAAGGCACCACTAAAAGACAT
TACTTTTTATGGCGTTTGTG
Found at i:76088782 original size:41 final size:43
Alignment explanation
Indices: 76088736--76088827 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
76088726 GGGTCAAAGT
76088736 GCCGCTAAAAGTCATG-CTTTTAG-GGCGCTTTTCCTACAAAC
1 GCCGCTAAAAGTCATGTCTTTTAGCGGCGCTTTTCCTACAAAC
**
76088777 GCCGCTAAAAGTCATGTCTTTTAGCGGCGCTTTTGTTACAAAC
1 GCCGCTAAAAGTCATGTCTTTTAGCGGCGCTTTTCCTACAAAC
*
76088820 ACCGCTAA
1 GCCGCTAA
76088828 TTTTGGCAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 16 0.35
42 7 0.15
43 23 0.50
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (43 bp):
GCCGCTAAAAGTCATGTCTTTTAGCGGCGCTTTTCCTACAAAC
Found at i:76091721 original size:21 final size:19
Alignment explanation
Indices: 76091705--76091740 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
76091695 AAAAATTGAA
76091705 AAAGCAGCCATTAAAA-TG
1 AAAGCAGCCATTAAAATTG
*
76091723 GAAGCAGCCATTAAAATT
1 AAAGCAGCCATTAAAATT
76091741 TATTATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
AAAGCAGCCATTAAAATTG
Found at i:76093664 original size:21 final size:21
Alignment explanation
Indices: 76093640--76093693 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
76093630 CTCATAACCT
*
76093640 TAAACTCTAAACTATATCCCC
1 TAAACCCTAAACTATATCCCC
76093661 TAAACCCTAAACTATATCCCC
1 TAAACCCTAAACTATATCCCC
*
76093682 TAAACCATAAAC
1 TAAACCCTAAAC
76093694 CACAAAACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.24
Consensus pattern (21 bp):
TAAACCCTAAACTATATCCCC
Found at i:76093918 original size:29 final size:29
Alignment explanation
Indices: 76093897--76093969 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
76093887 AACCCCTAAG
*
76093897 CCTAAACCCCTCAACCATTAACCCATAACC
1 CCTAAACCCCT-AACCACTAACCCATAACC
**
76093927 CCTAAACCCCTAACCACTAACTTATAACC
1 CCTAAACCCCTAACCACTAACCCATAACC
*
76093956 CTTAAACCCC-AACC
1 CCTAAACCCCTAACC
76093970 TTTAAACCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 4 0.10
29 24 0.62
30 11 0.28
ACGTcount: A:0.37, C:0.45, G:0.00, T:0.18
Consensus pattern (29 bp):
CCTAAACCCCTAACCACTAACCCATAACC
Found at i:76093947 original size:22 final size:21
Alignment explanation
Indices: 76093887--76093947 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
76093877 ACAAAACAAT
* *
76093887 AACCCCTAAGCCTAAACCCCTC
1 AACCCCTAACCCT-AACCCCTA
**
76093909 AACCATTAACCCATAACCCCTA
1 AACCCCTAACCC-TAACCCCTA
76093931 AACCCCTAACCACTAAC
1 AACCCCTAACC-CTAAC
76093948 TTATAACCCT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.38, C:0.46, G:0.02, T:0.15
Consensus pattern (21 bp):
AACCCCTAACCCTAACCCCTA
Found at i:76094843 original size:114 final size:114
Alignment explanation
Indices: 76094719--76094926 Score: 260
Period size: 114 Copynumber: 1.8 Consensus size: 114
76094709 TAAAGCGCCA
* * *
76094719 CTACTACTCGA-CATATAGCAGC-TTTTTCCTGAAAGTGCCACTAATGCCACAGAAGGTCAATTT
1 CTACTACTCGATC-TATAGCAGCGTTTTT-ATGAAAGCGCCACTAATGCCACAGAAGCTCAATTT
76094782 AAACGACGTCATTCGCCTTAA-TCTTTTAGCGGTGCTTTCCTAAAAACACTG
64 AAACGACGTCATTCGCC-TAAGTCTTTTAGCGGTGCTTTCCTAAAAACACTG
* * * * ** *
76094833 CTACTGCTCGATCTTTTGCAGCGTTTTTATGGAAGCGCTGCTAATGCCACGGAAGCTCAATTTAA
1 CTACTACTCGATCTATAGCAGCGTTTTTATGAAAGCGCCACTAATGCCACAGAAGCTCAATTTAA
* *
76094898 ACGACGTCGTTCGGCTAAGTCTTTTAGCG
66 ACGACGTCATTCGCCTAAGTCTTTTAGCG
76094927 ACGTTTCTTG
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
113 3 0.04
114 70 0.89
115 6 0.08
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (114 bp):
CTACTACTCGATCTATAGCAGCGTTTTTATGAAAGCGCCACTAATGCCACAGAAGCTCAATTTAA
ACGACGTCATTCGCCTAAGTCTTTTAGCGGTGCTTTCCTAAAAACACTG
Found at i:76097560 original size:13 final size:13
Alignment explanation
Indices: 76097544--76097576 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76097534 TTTAATTAAA
*
76097544 TTAGTTAATTAGT
1 TTAGATAATTAGT
76097557 TTAGATAATTAGT
1 TTAGATAATTAGT
76097570 TTA-ATAA
1 TTAGATAA
76097577 ACGAAGCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:76102951 original size:6 final size:6
Alignment explanation
Indices: 76102936--76103019 Score: 53
Period size: 6 Copynumber: 13.7 Consensus size: 6
76102926 TCCTCCTATC
* * * *
76102936 TTTTTA -TTTTA TTTTTA TTTTATTA TTATTA TTTTTC TTTTTC TTTTTC
1 TTTTTA TTTTTA TTTTTA -TTT-TTA TTTTTA TTTTTA TTTTTA TTTTTA
* * * **
76102985 TTTTTC TTTTTC TTTTCA TTTCAA TTTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTTTA TTTT
76103020 GAAAGACATA
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
5 5 0.08
6 48 0.74
7 9 0.14
8 3 0.05
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:76102952 original size:11 final size:11
Alignment explanation
Indices: 76102936--76102965 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
76102926 TCCTCCTATC
76102936 TTTTTATTTTA
1 TTTTTATTTTA
76102947 TTTTTATTTTA
1 TTTTTATTTTA
*
76102958 TTATTATT
1 TTTTTATT
76102966 ATTTTTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:76102984 original size:12 final size:12
Alignment explanation
Indices: 76102967--76103000 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
76102957 ATTATTATTA
76102967 TTTTTCTTTTTC
1 TTTTTCTTTTTC
76102979 TTTTTCTTTTTC
1 TTTTTCTTTTTC
76102991 TTTTTCTTTT
1 TTTTTCTTTT
76103001 CATTTCAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTCTTTTTC
Found at i:76107759 original size:13 final size:14
Alignment explanation
Indices: 76107736--76107767 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
76107726 ATTATTGCGT
76107736 GAAAGTTTCATGAA
1 GAAAGTTTCATGAA
76107750 GAAA-TTTCATGAA
1 GAAAGTTTCATGAA
76107763 -AAAGT
1 GAAAGT
76107768 GTCCAATCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 3 0.18
13 10 0.59
14 4 0.24
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (14 bp):
GAAAGTTTCATGAA
Found at i:76108904 original size:48 final size:48
Alignment explanation
Indices: 76108834--76109066 Score: 232
Period size: 48 Copynumber: 4.9 Consensus size: 48
76108824 TCAGGATATG
* *
76108834 TGTGATCCCATGTAAAACCATGTTTGGGACATGGAATTGGCATCGAAA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATCGAAA
*
76108882 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC-AATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATCGAA-A
* * * * *
76108930 TGAGA-CATCGTGTAAGACCATAG-CTGGG-C-T---ATCGGCATCGATA
1 TGTGATC-CCATGTAAGACCAT-GTCTGGGACATGGAATTGGCATCGAAA
**
76108973 TGCATGATCCCATGTAAGACCATGTCTGGGACAT-GACATTGGCATCGGTA
1 TG--TGATCCCATGTAAGACCATGTCTGGGACATGGA-ATTGGCATCGAAA
* * *
76109023 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATC
76109067 CTACTATGTG
Statistics
Matches: 155, Mismatches: 16, Indels: 28
0.78 0.08 0.14
Matches are distributed among these distances:
43 11 0.07
44 2 0.01
45 19 0.12
46 3 0.02
47 5 0.03
48 100 0.65
49 2 0.01
50 13 0.08
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATCGAAA
Found at i:76109043 original size:93 final size:90
Alignment explanation
Indices: 76108871--76109059 Score: 254
Period size: 93 Copynumber: 2.1 Consensus size: 90
76108861 GACATGGAAT
*
76108871 TGGCATCGAAATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATGAGAC
1 TGGCATCGAAATGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCAATATGAGAC
* * *
76108936 ATCGTGTAAGACCATAGCTGGGCTA
66 ACCATGTAAGACCATAGCTGGGATA
* ** *
76108961 TCGGCATCGATATGCATGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCGGTATGT
1 T-GGCATCGAAATG--TGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCAATATGA
*
76109026 GATC-CCATGTAAGACCATATCTGGGATA
63 GA-CACCATGTAAGACCATAGCTGGGATA
76109054 TGGCAT
1 TGGCAT
76109060 TGGCATCCTA
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
90 1 0.01
91 11 0.13
92 5 0.06
93 68 0.79
94 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (90 bp):
TGGCATCGAAATGTGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCAATATGAGAC
ACCATGTAAGACCATAGCTGGGATA
Found at i:76111270 original size:40 final size:40
Alignment explanation
Indices: 76111206--76111437 Score: 312
Period size: 40 Copynumber: 5.8 Consensus size: 40
76111196 GGGTTTAGCA
* *
76111206 GGATATAGCT-ACT-GCTCAAATGCCTTCGAGACTTAGCCC
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
76111245 GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
76111285 GGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
*
76111325 GGATATAGTAACTCGCACAAATGCCTTCGGGACGTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
76111365 AGATATAATAACTCGCACAATTGCCTTCGGG-CTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* * *
76111404 GGA-ATTAGTCACTTGCACAGATGCCTTCGGGACT
1 GGATA-TAGTAACTCGCACAAATGCCTTCGGGACT
76111438 CATCCCGGTT
Statistics
Matches: 172, Mismatches: 15, Indels: 11
0.87 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 42 0.24
40 126 0.73
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:76118380 original size:40 final size:40
Alignment explanation
Indices: 76118297--76118549 Score: 338
Period size: 40 Copynumber: 6.4 Consensus size: 40
76118287 CAACCAAGTA
** *
76118297 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
76118335 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
76118375 CCTTCGGGACTTAGCCCAGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
*
76118415 CCTTCCGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
76118455 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
76118495 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTTGCACAGATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
76118534 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
76118550 TAGTTATCAT
Statistics
Matches: 192, Mismatches: 16, Indels: 12
0.87 0.07 0.05
Matches are distributed among these distances:
38 14 0.07
39 46 0.24
40 130 0.68
41 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:76120559 original size:16 final size:17
Alignment explanation
Indices: 76120529--76120561 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
76120519 TCACACCATG
*
76120529 AATTTCACAAGTGAATT
1 AATTTCACAAATGAATT
76120546 AATTT-ACAAATGAATT
1 AATTTCACAAATGAATT
76120562 CAAAATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (17 bp):
AATTTCACAAATGAATT
Found at i:76123065 original size:26 final size:25
Alignment explanation
Indices: 76123032--76123090 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
76123022 TTACCCCAAC
76123032 AAAATTTTCAC-AATTTTACCTCTGGT
1 AAAATTTTCACGAATTTTA-C-CTGGT
* *
76123058 AAAATTTTGACGATTTTTACCTGGT
1 AAAATTTTCACGAATTTTACCTGGT
76123083 AAAATTTT
1 AAAATTTT
76123091 GAGAAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 13 0.43
26 11 0.37
27 6 0.20
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.44
Consensus pattern (25 bp):
AAAATTTTCACGAATTTTACCTGGT
Found at i:76125915 original size:46 final size:44
Alignment explanation
Indices: 76125832--76125946 Score: 131
Period size: 46 Copynumber: 2.5 Consensus size: 44
76125822 TGTGTGAGCT
* *
76125832 AGTGTAAGAAATGTCTAGGACATGCATCGGCCCCGAGACATAAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCACGAG--ATAAGCC
* * * ** *
76125878 AGTGTAAGACATGTCTAAGACATGCCTCGGCTACGAGATGTGTC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCACGAGATAAGCC
76125922 AGTGTAAGACCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTAGGACATG
76125947 GAATCAGCAC
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
44 13 0.22
45 14 0.24
46 32 0.54
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (44 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCACGAGATAAGCC
Found at i:76127196 original size:20 final size:21
Alignment explanation
Indices: 76127157--76127196 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
76127147 ATTGAAATGG
*
76127157 CCACACGGGCATGTTGCCCTT
1 CCACACGAGCATGTTGCCCTT
*
76127178 CCACACGAGCGTG-TGCCCT
1 CCACACGAGCATGTTGCCCT
76127197 ATTTCAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (21 bp):
CCACACGAGCATGTTGCCCTT
Found at i:76138463 original size:10 final size:10
Alignment explanation
Indices: 76138401--76138486 Score: 75
Period size: 10 Copynumber: 8.4 Consensus size: 10
76138391 TTCTGCCCAA
76138401 TTATAA-TTT
1 TTATAATTTT
76138410 TTATAATTTTT
1 TTATAA-TTTT
* *
76138421 TCTACAATTTG
1 T-TATAATTTT
*
76138432 TTATAAGTTT
1 TTATAATTTT
* *
76138442 ATATAATATT
1 TTATAATTTT
*
76138452 TTACAATTTT
1 TTATAATTTT
76138462 TTAATAATTTT
1 TT-ATAATTTT
*
76138473 TAATAATTTT
1 TTATAATTTT
76138483 TTAT
1 TTAT
76138487 TTACATCTGG
Statistics
Matches: 59, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
9 6 0.10
10 33 0.56
11 16 0.27
12 4 0.07
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.60
Consensus pattern (10 bp):
TTATAATTTT
Found at i:76138485 original size:31 final size:30
Alignment explanation
Indices: 76138401--76138485 Score: 93
Period size: 31 Copynumber: 2.8 Consensus size: 30
76138391 TTCTGCCCAA
76138401 TTATAATTTTT-ATAATTTTTTCTACAATTTG
1 TTATAATTTTTAATAA-TTTTT-TACAATTTG
* * *
76138432 TTATAA-GTTTATATAATATTTTACAATTTT
1 TTATAATTTTTA-ATAATTTTTTACAATTTG
76138462 TTAATAATTTTTAATAATTTTTTA
1 TT-ATAATTTTTAATAATTTTTTA
76138486 TTTACATCTG
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
30 13 0.29
31 24 0.53
32 8 0.18
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (30 bp):
TTATAATTTTTAATAATTTTTTACAATTTG
Found at i:76146479 original size:26 final size:26
Alignment explanation
Indices: 76146449--76146504 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
76146439 TGAAATTCCC
76146449 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76146475 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
76146501 ATCA
1 ATCA
76146505 ATTTGTACCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:76147990 original size:15 final size:15
Alignment explanation
Indices: 76147945--76147992 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
76147935 AATTACACCG
* *
76147945 AAAAAATTAAATTTT
1 AAAAAATTATATTAT
* *
76147960 AAAAAAGTATTTTTAT
1 AAAAAATTA-TATTAT
76147976 AAAAAATTATATTAT
1 AAAAAATTATATTAT
76147991 AA
1 AA
76147993 GCATGAATAC
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
15 15 0.58
16 11 0.42
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (15 bp):
AAAAAATTATATTAT
Found at i:76149504 original size:17 final size:18
Alignment explanation
Indices: 76149467--76149507 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
76149457 GTATGCCACG
*
76149467 AAATTTATTTTAATTCAA
1 AAATTTATTTTAATGCAA
*
76149485 AAATTTA-TTTCATGCAA
1 AAATTTATTTTAATGCAA
76149502 AAATTT
1 AAATTT
76149508 TGTAGTCCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.46
Consensus pattern (18 bp):
AAATTTATTTTAATGCAA
Found at i:76152499 original size:71 final size:72
Alignment explanation
Indices: 76152418--76152561 Score: 161
Period size: 71 Copynumber: 2.0 Consensus size: 72
76152408 ATGAATGACG
* *
76152418 ACATAAAATATAAT-ATGC-AGATATAATCATAGAAAACAATCAAAATAAC-A-ATATAGATTAC
1 ACATAAAATAT-ATCATGCAAAATATAA-CATAGAAAACAATCAAAATAACAATATATAAATTAC
76152479 ATAATATAT
64 ATAATATAT
* * * ***
76152488 ACATAATAATATTTCATGCAAAATATAACATAGAAAATAATGAGTCTAACAATATATAAATTACA
1 ACATAA-AATATATCATGCAAAATATAACATAGAAAACAATCAAAATAACAATATATAAATTACA
76152553 TAATATAT
65 TAATATAT
76152561 A
1 A
76152562 ACAATATTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
70 7 0.11
71 26 0.43
72 8 0.13
73 20 0.33
ACGTcount: A:0.56, C:0.10, G:0.06, T:0.29
Consensus pattern (72 bp):
ACATAAAATATATCATGCAAAATATAACATAGAAAACAATCAAAATAACAATATATAAATTACAT
AATATAT
Found at i:76153098 original size:17 final size:17
Alignment explanation
Indices: 76153073--76153105 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
76153063 ATAGGGAATA
76153073 ATATATAATAAAATATG
1 ATATATAATAAAATATG
*
76153090 ATATGTAATAAAATAT
1 ATATATAATAAAATAT
76153106 ATAAATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
ATATATAATAAAATATG
Found at i:76153135 original size:24 final size:22
Alignment explanation
Indices: 76153101--76153148 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 22
76153091 TATGTAATAA
76153101 AATATATAAATGAA-ATATAAAT
1 AATATATAAAT-AACATATAAAT
76153123 AATATGATAAAATAACATATAAAT
1 AATAT-AT-AAATAACATATAAAT
76153147 AA
1 AA
76153149 AAATAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.22
23 4 0.17
24 14 0.61
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (22 bp):
AATATATAAATAACATATAAAT
Found at i:76155215 original size:45 final size:45
Alignment explanation
Indices: 76155161--76155352 Score: 187
Period size: 45 Copynumber: 4.3 Consensus size: 45
76155151 CTCGGATGCT
* *
76155161 TCACTTATATCACGAACTTGGACCAACTCAACAAGTTCAGATTTC
1 TCACATATATCACGAACTCGGACCAACTCAACAAGTTCAGATTTC
* * ** *
76155206 TCACATATATCACAAACTCAGACCAACTCAATGAGCTCAGATGTTC
1 TCACATATATCACGAACTCGGACCAACTCAACAAGTTCAGAT-TTC
* * * *
76155252 TCATCCACA-AT---GAACTCGGACCAACTCAACGAGTTC-GAATAC
1 TCA--CATATATCACGAACTCGGACCAACTCAACAAGTTCAGATTTC
* **
76155294 TTCACATATATCACGAACTTGGACCAACTCAACAAGTTCAGATGCC
1 -TCACATATATCACGAACTCGGACCAACTCAACAAGTTCAGATTTC
76155340 TCACATATATCAC
1 TCACATATATCAC
76155353 ATAATATCAA
Statistics
Matches: 118, Mismatches: 20, Indels: 18
0.76 0.13 0.12
Matches are distributed among these distances:
41 3 0.03
42 4 0.03
43 5 0.04
44 21 0.18
45 71 0.60
46 9 0.08
47 2 0.02
48 3 0.03
ACGTcount: A:0.35, C:0.29, G:0.11, T:0.24
Consensus pattern (45 bp):
TCACATATATCACGAACTCGGACCAACTCAACAAGTTCAGATTTC
Found at i:76155335 original size:89 final size:89
Alignment explanation
Indices: 76155174--76155337 Score: 222
Period size: 89 Copynumber: 1.8 Consensus size: 89
76155164 CTTATATCAC
* * * **
76155174 GAACTTGGACCAACTCAACAAGTTCAGATTTCTCACATATATCACAAACTCAGACCAACTCAATG
1 GAACTCGGACCAACTCAACAAGTTCAGAATACTCACATATATCACAAACTCAGACCAACTCAACA
76155239 AGCTCAGATGTTCTCATCCACAAT
66 AGCTCAGATGTTCTCATCCACAAT
* * **
76155263 GAACTCGGACCAACTCAACGAGTTC-GAATACTTCACATATATCACGAACTTGGACCAACTCAAC
1 GAACTCGGACCAACTCAACAAGTTCAGAATAC-TCACATATATCACAAACTCAGACCAACTCAAC
*
76155327 AAGTTCAGATG
65 AAGCTCAGATG
76155338 CCTCACATAT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
88 4 0.06
89 60 0.94
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.23
Consensus pattern (89 bp):
GAACTCGGACCAACTCAACAAGTTCAGAATACTCACATATATCACAAACTCAGACCAACTCAACA
AGCTCAGATGTTCTCATCCACAAT
Found at i:76162313 original size:96 final size:96
Alignment explanation
Indices: 76162136--76162314 Score: 252
Period size: 96 Copynumber: 1.9 Consensus size: 96
76162126 TCTTTTCTTG
* * * *
76162136 TTGGATATTTAATTGGACATTGGAAACATTTATGATATTTTGAACTATACCAATAACATTACACA
1 TTGGATATTTAATTGGACATCGGAAACACTTATGATATTTTGAACTACACCAAAAACATTACACA
*
76162201 AAAGGTGATAACTCAATCTTATTCTCTCTAT
66 AAAGGTGAGAACTCAATCTTATTCTCTCTAT
* * * *
76162232 TTGGATATTTAATTGGACATCGGAAACCCTTATGATCTTTTGAACTACACCAAAAACATTTCGCA
1 TTGGATATTTAATTGGACATCGGAAACACTTATGATATTTTGAACTACACCAAAAACATTACACA
*
76162297 ACAGGTGAGAGA-TCAATC
66 AAAGGTGAGA-ACTCAATC
76162315 GTACTCCTCT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
96 71 0.99
97 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.34
Consensus pattern (96 bp):
TTGGATATTTAATTGGACATCGGAAACACTTATGATATTTTGAACTACACCAAAAACATTACACA
AAAGGTGAGAACTCAATCTTATTCTCTCTAT
Found at i:76173260 original size:21 final size:21
Alignment explanation
Indices: 76173228--76173268 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
76173218 GAACATTTGG
76173228 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
76173249 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
76173269 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:76184919 original size:43 final size:42
Alignment explanation
Indices: 76184852--76184996 Score: 141
Period size: 42 Copynumber: 3.4 Consensus size: 42
76184842 TTTCACAGGA
* **
76184852 TATGGTCTTACATGGGATCACATATCGATGCCGATAGCCCAGC
1 TATGGTCTTACACGAAATCACATATCGATGCC-ATAGCCCAGC
* *
76184895 TATGGTCTTACACGATATCTCATATCGATGCCAT-GTCCCAGAC
1 TATGGTCTTACACGAAATCACATATCGATGCCATAG-CCCAG-C
* ** * * * *
76184938 -ATGGTCTTGCACGAAATCACATATTTATGTCATATCCTAGA
1 TATGGTCTTACACGAAATCACATATCGATGCCATAGCCCAGC
76184979 TATGGTCTTACACGAAAT
1 TATGGTCTTACACGAAAT
76184997 TACACATAAC
Statistics
Matches: 84, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 54 0.64
43 29 0.35
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (42 bp):
TATGGTCTTACACGAAATCACATATCGATGCCATAGCCCAGC
Found at i:76187848 original size:20 final size:20
Alignment explanation
Indices: 76187778--76187854 Score: 66
Period size: 20 Copynumber: 3.9 Consensus size: 20
76187768 ATACTGTGAC
*
76187778 TTGTCCGCAATACTGGTAGT
1 TTGTCCGCATTACTGGTAGT
* * *
76187798 TTATCTGCACTACTGGTAGCT
1 TTGTCCGCATTACTGGTAG-T
* *
76187819 TT-TCCACATTACTGGCAGT
1 TTGTCCGCATTACTGGTAGT
* *
76187838 TTGTCTGCATTATTGGT
1 TTGTCCGCATTACTGGT
76187855 GGCTTCGTCC
Statistics
Matches: 44, Mismatches: 11, Indels: 4
0.75 0.19 0.07
Matches are distributed among these distances:
19 3 0.07
20 38 0.86
21 3 0.07
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.40
Consensus pattern (20 bp):
TTGTCCGCATTACTGGTAGT
Found at i:76188049 original size:19 final size:20
Alignment explanation
Indices: 76188004--76188049 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
76187994 TATTGCAATC
* *
76188004 TATGAAATTGTGTTGTTATG
1 TATGAAATTCTGTTATTATG
*
76188024 TAT-AAATTCTGTTATT-TT
1 TATGAAATTCTGTTATTATG
76188042 TATGAAAT
1 TATGAAAT
76188050 GTATGTTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 4 0.18
19 15 0.68
20 3 0.14
ACGTcount: A:0.30, C:0.02, G:0.15, T:0.52
Consensus pattern (20 bp):
TATGAAATTCTGTTATTATG
Found at i:76195227 original size:52 final size:53
Alignment explanation
Indices: 76195153--76195253 Score: 177
Period size: 52 Copynumber: 1.9 Consensus size: 53
76195143 AATATTTTTT
*
76195153 AAAAATATTTAACTAATTATATTAATGTTATTTAATTTTAAAAACATTTTTAA
1 AAAAATATTTAACTAATCATATTAATGTTATTTAATTTTAAAAACATTTTTAA
*
76195206 AAAAATATTTAACTAA-CATATTAATGTTATTTAATTTTAAAAATATTT
1 AAAAATATTTAACTAATCATATTAATGTTATTTAATTTTAAAAACATTT
76195254 AATATTAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
52 30 0.65
53 16 0.35
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.47
Consensus pattern (53 bp):
AAAAATATTTAACTAATCATATTAATGTTATTTAATTTTAAAAACATTTTTAA
Found at i:76195252 original size:16 final size:16
Alignment explanation
Indices: 76195233--76195263 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76195223 ATATTAATGT
*
76195233 TATTTAATTTTAAAAA
1 TATTTAATATTAAAAA
76195249 TATTTAATATTAAAA
1 TATTTAATATTAAAA
76195264 CAACGCAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:76211884 original size:24 final size:24
Alignment explanation
Indices: 76211857--76211906 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
76211847 GACACGACCG
76211857 TGTGTC-CTAGCCGTGTGACGAACA
1 TGTGTCTC-AGCCGTGTGACGAACA
*
76211881 TGTGTCTCAGCCGTGTGACGGACA
1 TGTGTCTCAGCCGTGTGACGAACA
76211905 TG
1 TG
76211907 GCCTAGGGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.18, C:0.24, G:0.32, T:0.26
Consensus pattern (24 bp):
TGTGTCTCAGCCGTGTGACGAACA
Found at i:76218854 original size:17 final size:17
Alignment explanation
Indices: 76218812--76218875 Score: 55
Period size: 17 Copynumber: 3.9 Consensus size: 17
76218802 ATTCTAAAAA
*
76218812 TTATATTATTTTAATAC
1 TTATATTAATTTAATAC
*
76218829 -TAAATTTAATTTAATAC
1 TTATA-TTAATTTAATAC
*
76218846 TTATATTAA--TAGTA-
1 TTATATTAATTTAATAC
*
76218860 TTTTATTAATTTAATA
1 TTATATTAATTTAATA
76218876 TTAAAGTAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
14 8 0.22
15 4 0.11
16 7 0.19
17 15 0.41
18 3 0.08
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.55
Consensus pattern (17 bp):
TTATATTAATTTAATAC
Found at i:76220362 original size:41 final size:40
Alignment explanation
Indices: 76220286--76220472 Score: 180
Period size: 41 Copynumber: 4.6 Consensus size: 40
76220276 ACTCGATATC
*
76220286 TCGCACACTAAGTGCCAATGTATAGCCAAAGCTATTATAATT
1 TCGCACACTAAGTGCC-ATATATAGCCAAAGCTATT-TAATT
* *
76220328 TCGCACACTAAGTGCCTTATATAGCCAAAGCTATTATAATC
1 TCGCACACTAAGTGCCATATATAGCCAAAGCTATT-TAATT
** * * * *
76220369 TAACACACTAAGTGCCATACATAGCCGAAGCTATCTCAGTCT
1 TCGCACACTAAGTGCCATATATAGCCAAAGCTAT-TTAAT-T
* * * *
76220411 T-GCATATTAAGTGGCATATATAGCCAAAGCTATTTAGA-A
1 TCGCACACTAAGTGCCATATATAGCCAAAGCTATTTA-ATT
*
76220450 TCGCACACTAAGTGCCATTTATA
1 TCGCACACTAAGTGCCATATATA
76220473 TATATCTGAA
Statistics
Matches: 117, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
39 1 0.01
40 19 0.16
41 79 0.68
42 18 0.15
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.28
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCCAAAGCTATTTAATT
Found at i:76227764 original size:41 final size:41
Alignment explanation
Indices: 76227710--76227808 Score: 135
Period size: 41 Copynumber: 2.4 Consensus size: 41
76227700 TAAGTGTTAA
*
76227710 TACATAGCCGAAGCTATTATAATTTCACACACTAAATGCCT
1 TACATAGCCGAAGCTATTATAATCTCACACACTAAATGCCT
* * * * * *
76227751 TATATAGCTGAAGCTATTATAATCTCGCATAGTAAGTGCCT
1 TACATAGCCGAAGCTATTATAATCTCACACACTAAATGCCT
76227792 TACATAGCCGAAGCTAT
1 TACATAGCCGAAGCTAT
76227809 CTCTGGCTCG
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.30
Consensus pattern (41 bp):
TACATAGCCGAAGCTATTATAATCTCACACACTAAATGCCT
Found at i:76228086 original size:81 final size:81
Alignment explanation
Indices: 76227951--76228112 Score: 270
Period size: 81 Copynumber: 2.0 Consensus size: 81
76227941 ACATTTAAAG
*
76227951 TATAATCATAACAATGCTTAATCCACACGAACTTACCTTAGATATTAAAACAACGAACTGAATTG
1 TATAATCATAACAATGCTTAATCCACACGAACTTACCTCAGATATTAAAACAACGAACTGAATTG
76228016 ATTAGTCGATAACTTT
66 ATTAGTCGATAACTTT
* * * * *
76228032 TATAATTATAACAATGCTTAATCCATATGAATTTATCTCAGATATTAAAACAACGAACTGAATTG
1 TATAATCATAACAATGCTTAATCCACACGAACTTACCTCAGATATTAAAACAACGAACTGAATTG
76228097 ATTAGTCGATAACTTT
66 ATTAGTCGATAACTTT
76228113 CATTTTTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 75 1.00
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (81 bp):
TATAATCATAACAATGCTTAATCCACACGAACTTACCTCAGATATTAAAACAACGAACTGAATTG
ATTAGTCGATAACTTT
Found at i:76230378 original size:47 final size:48
Alignment explanation
Indices: 76230323--76230545 Score: 219
Period size: 47 Copynumber: 4.8 Consensus size: 48
76230313 GGTAAGGTGC
*
76230323 CGATGCCATGTCCCAGACCTGGTCTTACACTGGCTCACATCTC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAGT
* * * *
76230370 TGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTCGAAGT
* * *
76230418 CAATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAGT
* * * * * *
76230464 CGATG-CATGTCCCAAATAT-GTCTTACACTAGCACTCGTCTC-AA-T
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAGT
* *
76230508 ACCGATGCCATGTCCCGGACATGGTCTTATACTGGCTC
1 --CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
76230546 TCATAATGTG
Statistics
Matches: 143, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 60 0.42
47 64 0.45
48 17 0.12
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAAGT
Found at i:76230458 original size:46 final size:46
Alignment explanation
Indices: 76230323--76230586 Score: 193
Period size: 47 Copynumber: 5.7 Consensus size: 46
76230313 GGTAAGGTGC
* * *
76230323 CGATGCCATGTCCCAGACCTGGTCTTACACTGGCTCACATCTCAAGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGT
* * *
76230370 TGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCG-AGT
*
76230418 CAATGCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGATGT
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-GT
* * * * * *
76230464 CGATGCATGTCCCAAATAT-GTCTTACACTAGCACT-CGTCTC-AAT
1 CGATGCATGTCCCAGACATGGTCTTACACTGGC-TTACATCTCGAGT
* * * * *
76230508 ACCGATGCCATGTCCCGGACATGGTCTTATACTGGCTCT-CATAAT-GTGG
1 --CGATG-CATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCGAGT
*
76230557 CTGATGAATGTCCCAGACAT-GTCTTACACT
1 C-GATGCATGTCCCAGACATGGTCTTACACT
76230587 AGCATACACA
Statistics
Matches: 173, Mismatches: 31, Indels: 27
0.75 0.13 0.12
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 68 0.39
47 78 0.45
48 23 0.13
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGT
Found at i:76230520 original size:93 final size:94
Alignment explanation
Indices: 76230321--76230545 Score: 264
Period size: 93 Copynumber: 2.4 Consensus size: 94
76230311 TGGGTAAGGT
* * *
76230321 GCCGATGCCATGTCCCAGACCTGGTCTTACACTGGCTCACATCTCAAGTTGATGCCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAA
*
76230386 ACATGGTCTTACACTGACTATCATCTCGTA
66 ACATGGTCTTACACTGAC-ATCATCTCATA
* * *
76230416 GCCAATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGATGTCGATG-CATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTC-AAGTCGATGCCATGTCCCA
* *
76230478 AATAT-GTCTTACACT-AGCACTCGTCTCAATA
65 AACATGGTCTTACACTGA-CA-TCATCTC-ATA
* *
76230509 -CCGATGCCATGTCCCGGACATGGTCTTATACTGGCTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
76230546 TCATAATGTG
Statistics
Matches: 111, Mismatches: 13, Indels: 13
0.81 0.09 0.09
Matches are distributed among these distances:
91 2 0.02
92 22 0.20
93 48 0.43
94 33 0.30
95 6 0.05
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (94 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAA
ACATGGTCTTACACTGACATCATCTCATA
Found at i:76236558 original size:17 final size:17
Alignment explanation
Indices: 76236538--76236573 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
76236528 TGTACTCTTG
76236538 CTAGGTTAATCCTAGAA
1 CTAGGTTAATCCTAGAA
*
76236555 CTAGGTTAGTCCTAGAA
1 CTAGGTTAATCCTAGAA
76236572 CT
1 CT
76236574 GACTAAACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (17 bp):
CTAGGTTAATCCTAGAA
Found at i:76238106 original size:47 final size:47
Alignment explanation
Indices: 76238017--76238138 Score: 135
Period size: 47 Copynumber: 2.6 Consensus size: 47
76238007 GGTAAGGTGC
* * *
76238017 CGATGCCATGTCCCATACATGGTCTTACACTGGCTCAGATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACATCTCAAGT
* *
76238064 CGATGCCATGTCCTAGACATGGTCTTACACTGACT-ATCATCTCGTAG-
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCA-CATCTC-AAGT
*
76238111 CCAGTG-CATGTCCCAGACAT-GTCTTACA
1 CGA-TGCCATGTCCCAGACATGGTCTTACA
76238139 TTGGTTTACA
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
46 9 0.14
47 52 0.80
48 4 0.06
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACATCTCAAGT
Found at i:76239997 original size:15 final size:13
Alignment explanation
Indices: 76239968--76239994 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
76239958 GCTCGTCAGG
76239968 GACACGCCCGTGT
1 GACACGCCCGTGT
76239981 GACACGCCCGTGT
1 GACACGCCCGTGT
76239994 G
1 G
76239995 TGATTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:76240361 original size:13 final size:13
Alignment explanation
Indices: 76240343--76240375 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
76240333 CGTTTGCTTT
76240343 TCCTCAAGCAAAA
1 TCCTCAAGCAAAA
76240356 TCCTCAAGCAAAA
1 TCCTCAAGCAAAA
76240369 TCCTCAA
1 TCCTCAA
76240376 CTCATAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.42, C:0.33, G:0.06, T:0.18
Consensus pattern (13 bp):
TCCTCAAGCAAAA
Found at i:76242037 original size:16 final size:16
Alignment explanation
Indices: 76241998--76242040 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 16
76241988 GAAATAGCCG
* *
76241998 AAACTATAAATTATTC
1 AAACTAAAAATTATAC
76242014 -AA-TAAAAATTATAC
1 AAACTAAAAATTATAC
76242028 AAACTAAAAATTA
1 AAACTAAAAATTA
76242041 AAATAGTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 10 0.43
15 4 0.17
16 9 0.39
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.30
Consensus pattern (16 bp):
AAACTAAAAATTATAC
Found at i:76252191 original size:32 final size:32
Alignment explanation
Indices: 76252119--76252195 Score: 111
Period size: 32 Copynumber: 2.4 Consensus size: 32
76252109 TTGAATCTTC
* *
76252119 GTACATGCATGTACCATATTGTACCAATTTCT
1 GTACATACCTGTACCATATTGTACCAATTTCT
76252151 GTACATACCTGTACCATATTGTACCAATTT-T
1 GTACATACCTGTACCATATTGTACCAATTTCT
*
76252182 CGTATATACCTGTA
1 -GTACATACCTGTA
76252196 TCATCCAGTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
31 1 0.02
32 40 0.98
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.38
Consensus pattern (32 bp):
GTACATACCTGTACCATATTGTACCAATTTCT
Found at i:76252207 original size:32 final size:33
Alignment explanation
Indices: 76252119--76252210 Score: 89
Period size: 32 Copynumber: 2.8 Consensus size: 33
76252109 TTGAATCTTC
* * **
76252119 GTACATGCATGTACCATATTGTACCAA-TTTCT
1 GTACATACCTGTACCATACAGTACCAATTTTCT
**
76252151 GTACATACCTGTACCATATTGTACCAATTTTC-
1 GTACATACCTGTACCATACAGTACCAATTTTCT
* * *
76252183 GTATATACCTGTATCATCCAGTACCAAT
1 GTACATACCTGTACCATACAGTACCAAT
76252211 CTCATACTCA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
32 48 0.92
33 4 0.08
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (33 bp):
GTACATACCTGTACCATACAGTACCAATTTTCT
Found at i:76256478 original size:39 final size:39
Alignment explanation
Indices: 76256395--76256611 Score: 303
Period size: 39 Copynumber: 5.6 Consensus size: 39
76256385 AGGATTTTAA
* * * *
76256395 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAGATTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA-TTATAT
* * *
76256433 CTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
76256472 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
76256511 CCGGGCTAAGTCCCGAAGGCATTCGTGATGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
*
76256550 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
* *
76256589 CTGGGCTAAGTTCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
76256612 TGGGTTGGAA
Statistics
Matches: 162, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 19 0.12
39 141 0.87
40 2 0.01
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATAT
Found at i:76270653 original size:43 final size:43
Alignment explanation
Indices: 76270491--76270653 Score: 129
Period size: 42 Copynumber: 3.8 Consensus size: 43
76270481 ATAGGATTCT
* * *
76270491 GATATGTGATTTCATGTAAGACCATGCCTGGGAC-GTTGGCATC
1 GATATTTGATTACATGTAAGACCATGTCTGGGACAG-TGGCATC
* **
76270534 -A-ATTTGAGATTTACATGTAAGACCATGTCTGGGACATTCTCATC
1 GATATTT--GA-TTACATGTAAGACCATGTCTGGGACAGTGGCATC
* * * * * **
76270578 G-TATATGATTTCGTGTTAGACCCTGTGAGGGACAGTGGCATC
1 GATATTTGATTACATGTAAGACCATGTCTGGGACAGTGGCATC
76270620 GATATTTGATTACATGTAAGACC-TCGTCTGGGAC
1 GATATTTGATTACATGTAAGACCAT-GTCTGGGAC
76270654 GTTGACATTG
Statistics
Matches: 90, Mismatches: 22, Indels: 16
0.70 0.17 0.12
Matches are distributed among these distances:
41 3 0.03
42 28 0.31
43 28 0.31
44 28 0.31
45 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCATGTCTGGGACAGTGGCATC
Found at i:76271234 original size:24 final size:24
Alignment explanation
Indices: 76271206--76271259 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
76271196 AAGATGATTG
76271206 AGATTATGGAATTGGTTTTAGTAT
1 AGATTATGGAATTGGTTTTAGTAT
*
76271230 AGATTATGGAATTGGTTTTGGTAT
1 AGATTATGGAATTGGTTTTAGTAT
76271254 AGATTA
1 AGATTA
76271260 AATGTTAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (24 bp):
AGATTATGGAATTGGTTTTAGTAT
Found at i:76285045 original size:12 final size:12
Alignment explanation
Indices: 76285004--76285045 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
76284994 TTAGGCTGTT
*
76285004 ACACGACCTAGC
1 ACACGGCCTAGC
*
76285016 ACACAGCCTAGC
1 ACACGGCCTAGC
76285028 ACACGGCCTAGC
1 ACACGGCCTAGC
*
76285040 ATACGG
1 ACACGG
76285046 GCATGTGGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.31, C:0.38, G:0.21, T:0.10
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:76294101 original size:46 final size:46
Alignment explanation
Indices: 76294051--76294269 Score: 266
Period size: 46 Copynumber: 4.7 Consensus size: 46
76294041 TTGAGCATCC
* * *
76294051 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
* * * *
76294097 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--CT
*
76294144 GAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
*
76294190 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
* *
76294236 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76294270 GCGGGTTACA
Statistics
Matches: 149, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
45 3 0.02
46 103 0.69
47 26 0.17
48 4 0.03
50 4 0.03
51 3 0.02
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
Found at i:76294204 original size:93 final size:93
Alignment explanation
Indices: 76294045--76294215 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
76294035 GGATGATTGA
* * *
76294045 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
76294110 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
76294138 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
76294203 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
76294216 ACTTATGGAT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76301727 original size:46 final size:46
Alignment explanation
Indices: 76301674--76301892 Score: 264
Period size: 46 Copynumber: 4.7 Consensus size: 46
76301664 TTGAGCATCC
* *
76301674 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCT
* * * * * *
76301720 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTA-AC-TAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATACGAACGC--CT
*
76301767 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCT
* *
76301813 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCT
* *
76301859 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76301893 GCGGGTTACA
Statistics
Matches: 150, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
45 3 0.02
46 111 0.74
47 32 0.21
48 4 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCT
Found at i:76301827 original size:93 final size:93
Alignment explanation
Indices: 76301668--76301838 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
76301658 GGATGATTGA
* *
76301668 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCTGAACTCGTTGAGT
76301733 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
76301761 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCTGAACTCGTTGAGT
76301826 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
76301839 ACTTATGGAT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76307676 original size:15 final size:16
Alignment explanation
Indices: 76307648--76307677 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76307638 TAATGTTATA
76307648 TTAATTGTGTATAATT
1 TTAATTGTGTATAATT
76307664 TTAATTG-GTATAAT
1 TTAATTGTGTATAAT
76307678 AGCAAATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (16 bp):
TTAATTGTGTATAATT
Found at i:76308669 original size:30 final size:30
Alignment explanation
Indices: 76308623--76308682 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
76308613 CTGGAGTAGA
* *
76308623 GTTAGAGCCCTACACAAGACCCTTTTGAAT
1 GTTAAAGCCCTACACAAGACCCTCTTGAAT
*
76308653 GTTAAAGCCCTCCACAAGACCCTCTTGAAT
1 GTTAAAGCCCTACACAAGACCCTCTTGAAT
76308683 TTCCTTGACC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
GTTAAAGCCCTACACAAGACCCTCTTGAAT
Found at i:76310665 original size:16 final size:15
Alignment explanation
Indices: 76310639--76310669 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
76310629 ACATACACCA
76310639 AGATTAATAAAATCT
1 AGATTAATAAAATCT
76310654 AGATTCAATAAAATCT
1 AGATT-AATAAAATCT
76310670 CATTCTTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.32
Consensus pattern (15 bp):
AGATTAATAAAATCT
Found at i:76312166 original size:56 final size:56
Alignment explanation
Indices: 76312105--76312253 Score: 199
Period size: 56 Copynumber: 2.7 Consensus size: 56
76312095 AAGTATTAAG
* * * *
76312105 ATATTATTATAAGATATTATCTTTTAACAATTTGATTCTTAATGGGATGTTATAAA
1 ATATTATTATAGGATATTATCTTTTAACAATTTGATTCCTAATGAGATATTATAAA
* * * **
76312161 ATATTATTATAGGATATTATTTTTTAGCAATTTAATTCCTAATGAGATATTATAGG
1 ATATTATTATAGGATATTATCTTTTAACAATTTGATTCCTAATGAGATATTATAAA
* *
76312217 ATATTATTATGGGATATTATCTTTTAACAACTTGATT
1 ATATTATTATAGGATATTATCTTTTAACAATTTGATT
76312254 TTACACTGTA
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 79 1.00
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.47
Consensus pattern (56 bp):
ATATTATTATAGGATATTATCTTTTAACAATTTGATTCCTAATGAGATATTATAAA
Done.