Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 221 of 290
Found at i:76316446 original size:29 final size:29
Alignment explanation
Indices: 76316389--76316447 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
76316379 TCCTTGAACA
* *
76316389 CAACAAAATAATTTTTCTCGAGTATCTGT
1 CAACAAAATAATTTTTCTCGAGCAGCTGT
76316418 CAACAAAATAATTTTTCTCGAGCAGCTGT
1 CAACAAAATAATTTTTCTCGAGCAGCTGT
76316447 C
1 C
76316448 TTACACTTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (29 bp):
CAACAAAATAATTTTTCTCGAGCAGCTGT
Found at i:76318265 original size:46 final size:46
Alignment explanation
Indices: 76318198--76318369 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
76318188 TGTAACCCGC
* * * *
76318198 CCATAGGTGAACTCGGACTCAACTCAATGAGTTTGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * *
76318244 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGACTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCAT
* *** * *
76318290 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
76318337 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
76318370 TGGATGCCCA
Statistics
Matches: 98, Mismatches: 25, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
46 64 0.65
47 34 0.35
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:76318392 original size:46 final size:46
Alignment explanation
Indices: 76318249--76318392 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 46
76318239 CGCATCCATA
* * *
76318249 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGACTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * * *
76318298 --CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
* *
76318342 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
76318388 AGTGA
1 AGTGA
76318393 CATGTCACTT
Statistics
Matches: 72, Mismatches: 17, Indels: 15
0.69 0.16 0.14
Matches are distributed among these distances:
44 8 0.11
46 31 0.43
47 30 0.42
49 3 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:76320375 original size:17 final size:17
Alignment explanation
Indices: 76320353--76320415 Score: 74
Period size: 17 Copynumber: 3.7 Consensus size: 17
76320343 AGAACTCGTA
*
76320353 GGTGAGCTCTCAAGT-TT
1 GGTGAGCTCGC-AGTGTT
76320370 GGTGAGCTCGCAGTGTT
1 GGTGAGCTCGCAGTGTT
* * *
76320387 GGTGAGCTCACAGTCTC
1 GGTGAGCTCGCAGTGTT
76320404 GGTGAGCTCGCA
1 GGTGAGCTCGCA
76320416 CTTTTTTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
16 3 0.08
17 37 0.93
ACGTcount: A:0.16, C:0.22, G:0.35, T:0.27
Consensus pattern (17 bp):
GGTGAGCTCGCAGTGTT
Found at i:76334805 original size:47 final size:47
Alignment explanation
Indices: 76334687--76334811 Score: 135
Period size: 47 Copynumber: 2.7 Consensus size: 47
76334677 ATCGATAAGT
* * * * *
76334687 CCTATACCATGG-CCGTAGCCAAATCAAGGTAACTTATCCCGAAGTA
1 CCTATACCATGGCCCGTAGCAAAATCAAGGTAACTCATCACAAAATA
** * * *
76334733 CCTATACCATAACCCATAGCTAAATCAAGGTAACTCCTCACAAAATA
1 CCTATACCATGGCCCGTAGCAAAATCAAGGTAACTCATCACAAAATA
* *
76334780 CTTATACCATGGCCCGTAGAAAAATCAAGGTA
1 CCTATACCATGGCCCGTAGCAAAATCAAGGTA
76334812 TTTACTCGCA
Statistics
Matches: 63, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
46 10 0.16
47 53 0.84
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.22
Consensus pattern (47 bp):
CCTATACCATGGCCCGTAGCAAAATCAAGGTAACTCATCACAAAATA
Found at i:76335973 original size:13 final size:13
Alignment explanation
Indices: 76335955--76335979 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76335945 ACAAACGATA
76335955 AAATTTTCACACG
1 AAATTTTCACACG
76335968 AAATTTTCACAC
1 AAATTTTCACAC
76335980 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:76337598 original size:24 final size:24
Alignment explanation
Indices: 76337555--76337604 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
76337545 AATAAGATTT
*
76337555 AATATTAAATTTAATCTAATATTA
1 AATATTAAATTAAATCTAATATTA
* *
76337579 AATATTAGATTAAATTTAATATTA
1 AATATTAAATTAAATCTAATATTA
76337603 AA
1 AA
76337605 GTGATTTCGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (24 bp):
AATATTAAATTAAATCTAATATTA
Found at i:76343425 original size:27 final size:27
Alignment explanation
Indices: 76343375--76343485 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
76343365 AGCATGGCTG
* *
76343375 CCAGAACAGATA-ATGTGACAGAGCCA
1 CCAGAACAGAAATATGTGGCAGAGCCA
*
76343401 CCAGAACAGAAATATGTAGCAGAGCCA
1 CCAGAACAGAAATATGTGGCAGAGCCA
*
76343428 CCAGAACAGAAATATGTGGCAGATCCA
1 CCAGAACAGAAATATGTGGCAGAGCCA
* *
76343455 CCAGATCAGATAAT-TGTGGCATAGCCA
1 CCAGAACAGA-AATATGTGGCAGAGCCA
76343482 CCAG
1 CCAG
76343486 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
26 11 0.15
27 61 0.81
28 3 0.04
ACGTcount: A:0.40, C:0.23, G:0.23, T:0.14
Consensus pattern (27 bp):
CCAGAACAGAAATATGTGGCAGAGCCA
Found at i:76343585 original size:33 final size:33
Alignment explanation
Indices: 76343543--76343608 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
76343533 ATTCATGGCA
*
76343543 TACAACATACAGATTTAAATCAACATGCTTTTC
1 TACAACATACAAATTTAAATCAACATGCTTTTC
76343576 TACAACATACAAATTTAAATCAACATGCTTTTC
1 TACAACATACAAATTTAAATCAACATGCTTTTC
76343609 AGACAAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (33 bp):
TACAACATACAAATTTAAATCAACATGCTTTTC
Found at i:76351320 original size:27 final size:26
Alignment explanation
Indices: 76351283--76351376 Score: 116
Period size: 27 Copynumber: 3.5 Consensus size: 26
76351273 AGCATGGCTG
* *
76351283 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
76351309 CCAGATACAGATAATCATGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
76351337 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
76351364 CCAGATCAGATAA
1 CCAGAACAGATAA
76351377 AGGACGCTTC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.10
27 36 0.62
28 16 0.28
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.14
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:76359853 original size:12 final size:12
Alignment explanation
Indices: 76359832--76359863 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
76359822 AGAGACACAA
76359832 GCCCGTGTCTCT
1 GCCCGTGTCTCT
*
76359844 GCCTGTGTCTCT
1 GCCCGTGTCTCT
76359856 GCCCGTGT
1 GCCCGTGT
76359864 GGACAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.38, G:0.28, T:0.34
Consensus pattern (12 bp):
GCCCGTGTCTCT
Found at i:76372123 original size:43 final size:43
Alignment explanation
Indices: 76372076--76372201 Score: 157
Period size: 43 Copynumber: 3.0 Consensus size: 43
76372066 CATCAATTTG
*
76372076 TGATTTACATGTAAGACCATGTTTGGGACATTGGCATTGTATA
1 TGATTTACATGTAAGACCATGTCTGGGACATTGGCATTGTATA
* * ** *
76372119 TGATTT-CATGTAAGACCCTGTCTGGGACAGTGGTTTTGATATT
1 TGATTTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATA
* *
76372162 TGA-TTACATGTAAGACCACGTCTGGGACGTTGGCATTGTA
1 TGATTTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
76372202 CGAGATTATG
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
42 31 0.45
43 38 0.55
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (43 bp):
TGATTTACATGTAAGACCATGTCTGGGACATTGGCATTGTATA
Found at i:76375603 original size:26 final size:26
Alignment explanation
Indices: 76375567--76375619 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
76375557 ATGTATATAT
76375567 AACATACATATTTATTTGACAAGAAG
1 AACATACATATTTATTTGACAAGAAG
76375593 AACATACATATTTATTTGACAAGAAG
1 AACATACATATTTATTTGACAAGAAG
76375619 A
1 A
76375620 TCTATCCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.30
Consensus pattern (26 bp):
AACATACATATTTATTTGACAAGAAG
Found at i:76379208 original size:181 final size:180
Alignment explanation
Indices: 76378913--76379238 Score: 476
Period size: 181 Copynumber: 1.8 Consensus size: 180
76378903 ATTTGATCTA
* * *
76378913 AAACTAGACTCATATATATTCTTACCATAAAATTTAAGAATTTTTGGACTAGCCAATAAGTACAA
1 AAACTAGACTCACATATACTCTTACCATAAAATTTAAGAAATTTTGGACTAGCCAATAAGTACAA
* * **
76378978 TTTATTCATTAAGTGTACCCCAGTTTCACTATTTGATTGTTCCGACCTCTCTTCACTAAAAATTA
66 TTTATTCATTAAATATACCCCAGTTTCACTATTTGACAGTTCCGACCTCTCTTCACTAAAAATTA
76379043 TTTATCTCATGGTACCGGACTCCAAATTGAGAACCGCTAATTTTACCCAG
131 TTTATCTCATGGTACCGGACTCCAAATTGAGAACCGCTAATTTTACCCAG
* * ** * *
76379093 AAACTAGACTCACATATACTCTTACCATAAAATTTTCATAAATTTTGGTTTAGTCAATTAGTACA
1 AAACTAGACTCACATATACTCTTACCATAAAA-TTTAAGAAATTTTGGACTAGCCAATAAGTACA
* *
76379158 GTTTATTCATTAAATATACCCCTA-TTTCACT-TTCTGACAGTTCTGACCTCTCTTCACTAAAAA
65 ATTTATTCATTAAATATACCCC-AGTTTCACTATT-TGACAGTTCCGACCTCTCTTCACTAAAAA
76379221 TTATTTATCTCATGGTAC
128 TTATTTATCTCATGGTAC
76379239 AGCTCTCGGA
Statistics
Matches: 128, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
180 32 0.25
181 95 0.74
182 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.37
Consensus pattern (180 bp):
AAACTAGACTCACATATACTCTTACCATAAAATTTAAGAAATTTTGGACTAGCCAATAAGTACAA
TTTATTCATTAAATATACCCCAGTTTCACTATTTGACAGTTCCGACCTCTCTTCACTAAAAATTA
TTTATCTCATGGTACCGGACTCCAAATTGAGAACCGCTAATTTTACCCAG
Found at i:76379856 original size:50 final size:50
Alignment explanation
Indices: 76379781--76380270 Score: 387
Period size: 50 Copynumber: 9.7 Consensus size: 50
76379771 ACCGAAGCTC
* * *
76379781 TCTGGTACGCATAGTAGCCTGCACTTAGTACAACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * *
76379831 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
** * * * * ** *
76379881 TCTAATACACGTAATAGCCTCCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* * * *
76379933 T-GGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * * * *
76379982 TCTGCTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * ** *
76380032 TCTGATACACGTAGTAGCTTGCACTTAGTACTACACAAGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* * * * * *
76380084 -CGGGTACGCATAGTAGCCTGCACTTAGAACTACATATGCGACCTCTCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * **
76380133 TCTGCTACACGTAGTAGCCTCCACGTAGTACTAAACACATGATCGAAGT-T-AA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACT--ACACATG--CGACCTATCAA
* * * * *
76380185 T-GGGAACGCATAGTAGCCTGCATTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* **
76380234 TCTGGTACACGTAATAGCCTGCACTTAACACTACACA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
76380271 CGTGACTCAC
Statistics
Matches: 337, Mismatches: 90, Indels: 26
0.74 0.20 0.06
Matches are distributed among these distances:
47 4 0.01
48 1 0.00
49 17 0.05
50 209 0.62
51 89 0.26
52 12 0.04
53 1 0.00
54 4 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
Found at i:76380057 original size:151 final size:151
Alignment explanation
Indices: 76379784--76380170 Score: 623
Period size: 151 Copynumber: 2.6 Consensus size: 151
76379774 GAAGCTCTCT
* *
76379784 GGTACGCATAGTAGCCTGCACTTAGTACAACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
*
76379849 CTGCACTTAGTACTACACACGTGACTTAACCATCTAATACACGTAATAGCCTCCACTTAGTACTA
66 CTGCAGTTAGTACTACACACGTGACTTAACCATCTAATACACGTAATAGCCTCCACTTAGTACTA
* *
76379914 CACACGTGATCGAAGTTAATG
131 CACAAGTGATCGAAGTTAACG
*
76379935 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
* * * *
76380000 CTGCAGTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCTTGCACTTAGTACTA
66 CTGCAGTTAGTACTACACACGTGACTTAACCATCTAATACACGTAATAGCCTCCACTTAGTACTA
76380065 CACAAGTGATCGAAGTTAACG
131 CACAAGTGATCGAAGTTAACG
* * *
76380086 GGTACGCATAGTAGCCTGCACTTAGAACTACATATGCGACCTCTCAATCTGCTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
* *
76380151 CTCCACG-TAGTACTAAACAC
66 CTGCA-GTTAGTACTACACAC
76380171 ATGATCGAAG
Statistics
Matches: 219, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
151 218 1.00
152 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
CTGCAGTTAGTACTACACACGTGACTTAACCATCTAATACACGTAATAGCCTCCACTTAGTACTA
CACAAGTGATCGAAGTTAACG
Found at i:76380098 original size:101 final size:101
Alignment explanation
Indices: 76379787--76380275 Score: 380
Period size: 101 Copynumber: 4.9 Consensus size: 101
76379777 GCTCTCTGGT
* *
76379787 ACGCATAGTAGCCTGCACTTAGTACAACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTG
1 ACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGCCTG
* * ** * **
76379852 CACTTAGTACTACACACGTGA-CTTAA-CCATC-TAA
66 CACTTAGTACTACACAAGTGATC-GAAGTTAACGGGA
* * * * * * ** * * * * *
76379886 TACACGTAATAGCCTCCACTTAGTACTACACACGTGATCGAAGTTAAT-GGGTACGCATAGTAGC
1 -ACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAATCTGATACACGTAGTAGC
* * * ** * * **
76379950 CTACACTTAGTACTACACATGCGA-CCTA-TCAATCTGCT
63 CTGCACTTAGTACTACACAAGTGATCGAAGTTAA-CGGGA
* * * * * * * * *
76379988 ACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCTTG
1 ACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGCCTG
*
76380053 CACTTAGTACTACACAAGTGATCGAAGTTAACGGGT
66 CACTTAGTACTACACAAGTGATCGAAGTTAACGGGA
* * * * *
76380089 ACGCATAGTAGCCTGCACTTAGAACTACATATGCGACCTCTCAATCTGCTACACGTAGTAGCCTC
1 ACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGCCTG
* * *
76380154 CACGTAGTACTAAACACA-TGATCGAAGTTAATGGGA
66 CACTTAGTACTACACA-AGTGATCGAAGTTAACGGGA
* * *
76380190 ACGCATAGTAGCCTGCATTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAATAGCCTG
1 ACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGCCTG
** *
76380255 CACTTAACACTACACACGTGA
66 CACTTAGTACTACACAAGTGA
76380276 CTCACAACGA
Statistics
Matches: 306, Mismatches: 74, Indels: 17
0.77 0.19 0.04
Matches are distributed among these distances:
99 2 0.01
100 66 0.22
101 230 0.75
102 8 0.03
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
ACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGCCTG
CACTTAGTACTACACAAGTGATCGAAGTTAACGGGA
Found at i:76380241 original size:151 final size:150
Alignment explanation
Indices: 76379784--76380220 Score: 523
Period size: 151 Copynumber: 2.9 Consensus size: 150
76379774 GAAGCTCTCT
* * *
76379784 GGTACGCATAGTAGCCTGCACTTAGTACAACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGAACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
* * *
76379849 CTGCACTTAGTACTACACACGTGACTTAACCATCTAAT-ACACG-TAATAGCCTCCACTTAGTAC
66 CTGCACGTAGTACTACACACGTGACTT-A--AT-TAATGACACGCTAGTAGCCTGCACTTAGTAC
*
76379912 TACACACGTGATCGAAGTTAAT-G
127 TACACAAGTGATCGAAGTTAATCG
* *
76379935 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGAACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
* *
76380000 CTGCA-GTTAGTACTACACACGTGACTTAACCATCTGAT-ACACG-TAGTAGCTTGCACTTAGTA
66 CTGCACG-TAGTACTACACACGTGACTT-A--AT-TAATGACACGCTAGTAGCCTGCACTTAGTA
76380062 CTACACAAGTGATCGAAGTTAA-CG
126 CTACACAAGTGATCGAAGTTAATCG
* *
76380086 GGTACGCATAGTAGCCTGCACTTAGAACTACATATGCGACCTCTCAATCTGCTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGAACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
* * * * *
76380151 CTCCACGTAGTACTAAACACATGA-TCGAAGTTAATGGGA-ACGCATAGTAGCCTGCATTTAGTA
66 CTGCACGTAGTACTACACACGTGACT-TAA-TTAAT--GACACGC-TAGTAGCCTGCACTTAGTA
76380214 CTACACA
126 CTACACA
76380221 TGCGACCTAT
Statistics
Matches: 256, Mismatches: 20, Indels: 19
0.87 0.07 0.06
Matches are distributed among these distances:
148 4 0.02
149 1 0.00
150 5 0.02
151 221 0.86
152 25 0.10
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGAACTACACATGCGACCTATCAATCTGCTACACGTAGTAGC
CTGCACGTAGTACTACACACGTGACTTAATTAATGACACGCTAGTAGCCTGCACTTAGTACTACA
CAAGTGATCGAAGTTAATCG
Found at i:76388585 original size:38 final size:38
Alignment explanation
Indices: 76388543--76389340 Score: 1560
Period size: 38 Copynumber: 21.0 Consensus size: 38
76388533 TTCATCCTTT
*
76388543 TTCATTTCTTTTGGCTGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76388581 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
***
76388619 GGAATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76388657 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76388695 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76388733 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76388771 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76388809 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76388847 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76388885 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76388923 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76388961 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76388999 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76389037 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76389075 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76389113 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76389151 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76389189 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76389227 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76389265 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76389303 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76389341 GGAGTTCTTG
Statistics
Matches: 753, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
38 753 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:76390621 original size:40 final size:40
Alignment explanation
Indices: 76390527--76390671 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
76390517 TACTCGAATG
*
76390527 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
76390568 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
76390608 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
76390648 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
76390672 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:76397369 original size:38 final size:38
Alignment explanation
Indices: 76397326--76398123 Score: 1569
Period size: 38 Copynumber: 21.0 Consensus size: 38
76397316 TTCATCCTTT
76397326 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397364 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
***
76397402 GGAATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397440 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397478 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397516 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397554 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397592 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397630 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397668 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397706 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397744 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397782 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397820 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397858 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397896 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397934 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76397972 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76398010 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76398048 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76398086 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76398124 GGAGTTCTTG
Statistics
Matches: 754, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
38 754 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:76399406 original size:40 final size:40
Alignment explanation
Indices: 76399312--76399456 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
76399302 TACTCGAATG
*
76399312 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
76399353 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
76399393 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
76399433 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
76399457 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:76409878 original size:50 final size:50
Alignment explanation
Indices: 76409812--76410194 Score: 367
Period size: 50 Copynumber: 7.6 Consensus size: 50
76409802 CTGGTATGCA
*
76409812 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATTTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * ** * * * * *
76409862 TAGTAGTCAGCACTTAGTACTACACACATGTCTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* *
76409912 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * *
76409962 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * ** *
76410012 TAGTAGCCTGCACTTAGTACTACACATGTGATCAAGTTAA-CGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTA-TCAATCTGGTACACG
* * * * *
76410062 TAGTAGCCTACACTTAGTGCTACACATGCGACCTCTCAATCTGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * * * * *
76410112 TAGTAGCCTGCACCTAGTACTACATACGGGA-TTGAAGTTAAT-GGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--A-TCAATCTGGTACACG
*
76410163 TAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGAC
76410195 TCACAATGGA
Statistics
Matches: 264, Mismatches: 63, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
49 4 0.02
50 219 0.83
51 37 0.14
52 4 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
Found at i:76410066 original size:100 final size:100
Alignment explanation
Indices: 76409812--76410195 Score: 430
Period size: 100 Copynumber: 3.8 Consensus size: 100
76409802 CTGGTATGCA
* ** * * *
76409812 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATTTGGTACACGTAGTAGTCAGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATCAATCGGGTACACATAGTAGCCTGCACTT
* *
76409877 AGTACTACACACATGTCTTAACCATCTGATACACG
66 AGTACTACACACGTGACTTAACCATCTGATACACG
* * * *
76409912 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACTTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATCAATCGGGTACACATAGTAGCCTGCACTT
76409977 AGTACTACACACGTGACTTAACCATCTGATACACG
66 AGTACTACACACGTGACTTAACCATCTGATACACG
* * ** *
76410012 TAGTAGCCTGCACTTAGTACTACACATGTGATCAAGTTAA-CGGGTATGCATAGTAGCCTACACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAA-TCAATCGGGTACACATAGTAGCCTGCACT
* * * * ** * * *
76410076 TAGTGCTACACATGCGACCTCTCAATCTGGTACACA
65 TAGTACTACACACGTGACTTAACCATCTGATACACG
* * * * ** *
76410112 TAGTAGCCTGCACCTAGTACTACATACGGGATTGAAGTTAAT-GGGTACACATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TCAATCGGGTACACATAGTAGCCTGCAC
76410176 TTAGTACTACACACGTGACT
64 TTAGTACTACACACGTGACT
76410196 CACAATGGAT
Statistics
Matches: 244, Mismatches: 37, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
100 198 0.81
101 46 0.19
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATCAATCGGGTACACATAGTAGCCTGCACTT
AGTACTACACACGTGACTTAACCATCTGATACACG
Found at i:76410076 original size:150 final size:149
Alignment explanation
Indices: 76409801--76410193 Score: 445
Period size: 150 Copynumber: 2.6 Consensus size: 149
76409791 GTGTCACATC
** * * *
76409801 TCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATTTGGTACACGTAGT
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA-TTGGTACACGTAGT
* * * * *
76409866 AGTCAGCACTTAGTACTACACACATG-TCTTAACCATCTGATACACGTAGTAGCCTGCACTTAGT
65 AGCCTGCACTTAGTACTACACACGTGATCTTAACCAGCTGATACAC-TAGTAGCCTACACTTAGT
76409930 ACTACACATGCGACCTATCAA
129 ACTACACATGCGACCTATCAA
* * *
76409951 TCTGGTACACTTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGT
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAAT-TGGTACACGTAGT
* * * *
76410016 AGCCTGCACTTAGTACTACACATGTGATCAAGTTAA-CGGGT-ATGCA-TAGTAGCCTACACTTA
65 AGCCTGCACTTAGTACTACACACGTGATC---TTAACCAGCTGATACACTAGTAGCCTACACTTA
* *
76410078 GTGCTACACATGCGACCTCTCAA
127 GTACTACACATGCGACCTATCAA
* * * * * *
76410101 TCTGGTACACATAGTAGCCTGCACCTAGTACTACATACGGGA-TTGAAGTTAATGGGTACACATA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTT-AA--CAATTGGTACACGTA
76410165 GTAGCCTGCACTTAGTACTACACACGTGA
63 GTAGCCTGCACTTAGTACTACACACGTGA
76410194 CTCACAATGG
Statistics
Matches: 206, Mismatches: 29, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
149 3 0.01
150 153 0.74
151 38 0.18
152 6 0.03
153 2 0.01
154 4 0.02
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (149 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATTGGTACACGTAGTA
GCCTGCACTTAGTACTACACACGTGATCTTAACCAGCTGATACACTAGTAGCCTACACTTAGTAC
TACACATGCGACCTATCAA
Found at i:76420752 original size:44 final size:44
Alignment explanation
Indices: 76420694--76420841 Score: 146
Period size: 43 Copynumber: 3.4 Consensus size: 44
76420684 AATCTGATAT
*
76420694 TCGGGCCTC-GGCCTAGCAAGCTT-TAA-GCTGGTGA-ATAATATTA
1 TCGGGCTTCGGGCCTAGCAAGCTTATAATGCTGGTGAGAT-A-A-TA
*
76420737 TCGGGCTTCGGGCCTAGC-AGGTTATAATGCTGGTGAGATAATA
1 TCGGGCTTCGGGCCTAGCAAGCTTATAATGCTGGTGAGATAATA
* ** * *
76420780 TCGGGCTTCGGGCCTAGCAGGC-TATAATGCCAGTGAAATGATA
1 TCGGGCTTCGGGCCTAGCAAGCTTATAATGCTGGTGAGATAATA
**
76420823 TCGGGCTTCAAGCCTAGCA
1 TCGGGCTTCGGGCCTAGCA
76420842 GGTGAAATGC
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
43 66 0.73
44 13 0.14
45 9 0.10
46 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (44 bp):
TCGGGCTTCGGGCCTAGCAAGCTTATAATGCTGGTGAGATAATA
Found at i:76420782 original size:43 final size:42
Alignment explanation
Indices: 76420730--76420859 Score: 163
Period size: 43 Copynumber: 3.1 Consensus size: 42
76420720 GCTGGTGAAT
* *
76420730 AATATTATCGGGCTTCGGGCCTAGCAGGTTATAATGCTGGTG
1 AATAATATCGGGCTTCGGGCCTAGCAGGTTATAATGCCGGTG
* *
76420772 AGATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCAGTG
1 A-ATAATATCGGGCTTCGGGCCTAGCAGGTTATAATGCCGGTG
* ** *
76420815 AAATGATATCGGGCTTCAAGCCTAGCAGGTGA-AATGCCGGTG
1 -AATAATATCGGGCTTCGGGCCTAGCAGGTTATAATGCCGGTG
76420857 AAT
1 AAT
76420860 GAGTTCAGAC
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
41 3 0.04
42 10 0.13
43 62 0.82
44 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (42 bp):
AATAATATCGGGCTTCGGGCCTAGCAGGTTATAATGCCGGTG
Found at i:76426379 original size:56 final size:56
Alignment explanation
Indices: 76426293--76426412 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
76426283 ACAAGGGATG
76426293 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
76426349 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
76426405 ATGGGCAA
1 ATGGGCAA
76426413 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:76427639 original size:39 final size:40
Alignment explanation
Indices: 76427538--76427722 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
76427528 TCGAATGATG
* * * * *
76427538 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
76427577 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
*
76427618 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
76427657 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
76427696 AACCGGGCTATGACCCGAAGGCATTTG
1 -TCCGGGCTAAGACCCGAAGGCATTTG
76427723 AATGAGTAGC
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:76427676 original size:79 final size:81
Alignment explanation
Indices: 76427538--76427722 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
76427528 TCGAATGATG
* * *
76427538 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
76427602 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
76427617 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
76427679 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
76427697 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
76427723 AATGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:76427744 original size:79 final size:79
Alignment explanation
Indices: 76427591--76427755 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
76427581 GGACTAAGAT
* **
76427591 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
76427656 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
76427670 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAATGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
76427733 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
76427749 CCGAAGG
1 CCGAAGG
76427756 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:76436827 original size:98 final size:98
Alignment explanation
Indices: 76436667--76436860 Score: 334
Period size: 98 Copynumber: 2.0 Consensus size: 98
76436657 CAAAGCCATC
* *
76436667 GATAACGGGTCTATAATCGGCACGAACCCCACAATATCGATATGAAGCCCACAATAATGGCACAC
1 GATAACGGGTCTATAATCGGCACGAACCCCACAATATCGATACGAAGCCCACAATAACGGCACAC
76436732 AGCCTTCGGTAACATGATCGGCACTCAACCACT
66 AGCCTTCGGTAACATGATCGGCACTCAACCACT
* *
76436765 GATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACGAAGCCCACAATAACGGCACAC
1 GATAACGGGTCTATAATCGGCACGAACCCCACAATATCGATACGAAGCCCACAATAACGGCACAC
* *
76436830 AGCCTTTGGTAACATGATCGGCACTCGACCA
66 AGCCTTCGGTAACATGATCGGCACTCAACCA
76436861 TCGATCGGTC
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.34, C:0.29, G:0.20, T:0.18
Consensus pattern (98 bp):
GATAACGGGTCTATAATCGGCACGAACCCCACAATATCGATACGAAGCCCACAATAACGGCACAC
AGCCTTCGGTAACATGATCGGCACTCAACCACT
Found at i:76436921 original size:27 final size:26
Alignment explanation
Indices: 76436871--76436953 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
76436861 TCGATCGGTC
* * *
76436871 AACAGATATTATGACAAAGTCACCAG
1 AACAGATATTGTGGCAAAGCCACCAG
*
76436897 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAAAGCCACCAG
*
76436924 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAAAGCCACCAG
76436951 AAC
1 AAC
76436954 GCTTCCTCCA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGCCACCAG
Found at i:76437175 original size:27 final size:28
Alignment explanation
Indices: 76437113--76437178 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 28
76437103 CAGTCACTTG
* *
76437113 CCCACAAGGGCAAAATAGTCATTTAACA
1 CCCACAAGGGTAAAATAGTAATTTAACA
* * *
76437141 CCC-TAAGGGTAAAATGGTAATTTTAC-
1 CCCACAAGGGTAAAATAGTAATTTAACA
76437167 CCCACAAGGGTA
1 CCCACAAGGGTA
76437179 TCTCGGTAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
26 3 0.10
27 25 0.81
28 3 0.10
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (28 bp):
CCCACAAGGGTAAAATAGTAATTTAACA
Found at i:76437186 original size:27 final size:27
Alignment explanation
Indices: 76437156--76437543 Score: 447
Period size: 27 Copynumber: 14.4 Consensus size: 27
76437146 AGGGTAAAAT
* * *
76437156 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76437183 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
76437210 AGTAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
76437237 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
76437264 GGTATTTCTAACCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76437291 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
76437318 GTTATTTCTACCATACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
76437345 AGTAATTTTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
76437372 AGTAATTCTACCTTA-TAGAGGTATTTT
1 GGTAATTCTACCCTACAAG-GGTATTTC
* * *
76437399 AGTAATTCTACCCTATATGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
76437426 GATATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76437453 GGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76437480 GGTAATTCTACCCTA-TAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
76437506 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76437533 AGTAATTCTAC
1 GGTAATTCTAC
76437544 AAATCGAGGG
Statistics
Matches: 309, Mismatches: 49, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
26 25 0.08
27 283 0.92
28 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:76437279 original size:81 final size:81
Alignment explanation
Indices: 76437157--76437543 Score: 503
Period size: 81 Copynumber: 4.8 Consensus size: 81
76437147 GGGTAAAATG
* * * * *
76437157 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACC
76437222 CTATAAGGGTATTTTA
66 CTATAAGGGTATTTTA
* *
76437238 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAACCTACAAGGGTATTTCAGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACC
* *
76437303 CTACAAGGGTA-TTTC
66 CTATAAGGGTATTTTA
* * * * *
76437318 GTTATTTCTACCATACAAGGGTATTTCAGTAATTT-TACCCTACAGGGGTATTTTAGTAATTCTA
1 G-TAATTCTACCCTACAAGGGTATTTCGGT-ATTTCTACCCTACAAGGGTATTTCAGTAATTCTA
*
76437382 CCTTAT-AGAGGTATTTTA
64 CCCTATAAG-GGTATTTTA
* * * * *
76437400 GTAATTCTACCCTATATGGGTATTTCGATATTTCTACCCTATAAGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACC
**
76437465 CTATAAGGGTATTTCG
66 CTATAAGGGTATTTTA
* *
76437481 GTAATTCTACCCTA-TAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTAGTAATTCTAC
1 GTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTAC
76437544 AAATCGAGGG
Statistics
Matches: 262, Mismatches: 38, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
80 53 0.20
81 199 0.76
82 10 0.04
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (81 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACC
CTATAAGGGTATTTTA
Found at i:76437553 original size:27 final size:27
Alignment explanation
Indices: 76437523--76437701 Score: 177
Period size: 27 Copynumber: 6.7 Consensus size: 27
76437513 CTACCCTACA
* *
76437523 AGGGTATTTTAGTAATTCTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
76437550 AGGGTATTTCAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
76437576 ACGGTATTTCGGTAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
76437603 ATGGTACTTT-GGTAATTTTA-AAAGTCA
1 AGGGTA-TTTCAGTAATTTTACAAA-TCG
* *
76437630 AGGGTATTTCAGTAATTTTGCAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
76437657 ATGGTATTTCAGTAATTTTGCAAA-CTA
1 AGGGTATTTCAGTAATTTTACAAATC-G
*
76437684 AGGGTATTTCGGTAATTT
1 AGGGTATTTCAGTAATTT
76437702 GGTAAACTAA
Statistics
Matches: 129, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
26 29 0.22
27 94 0.73
28 6 0.05
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:76437648 original size:54 final size:53
Alignment explanation
Indices: 76437521--76437701 Score: 195
Period size: 54 Copynumber: 3.4 Consensus size: 53
76437511 TTCTACCCTA
* * * *
76437521 CAAGGGTATTTTAGTAATTCTACAAATCGAGGGTATTTCAGTAATTTTACAAT
1 CAAGGGTATTTCAGTAATTTTACAAATCGATGGTATTTCAGTAATTTTAAAAT
* * * * *
76437574 CGACGGTATTTCGGTAATTTTATAAATCGATGGTACTTT-GGTAATTTTAAAAGT
1 CAAGGGTATTTCAGTAATTTTACAAATCGATGGTA-TTTCAGTAATTTTAAAA-T
* * *
76437628 CAAGGGTATTTCAGTAATTTTGCAAATTGATGGTATTTCAGTAATTTTGCAAA-
1 CAAGGGTATTTCAGTAATTTTACAAATCGATGGTATTTCAGTAATTTT-AAAAT
*
76437681 CTAAGGGTATTTCGGTAATTT
1 C-AAGGGTATTTCAGTAATTT
76437702 GGTAAACTAA
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
53 43 0.41
54 59 0.56
55 3 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (53 bp):
CAAGGGTATTTCAGTAATTTTACAAATCGATGGTATTTCAGTAATTTTAAAAT
Found at i:76437708 original size:27 final size:27
Alignment explanation
Indices: 76437629--76437711 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 27
76437619 TTTAAAAGTC
*
76437629 AAGGGTATTTCAGTAATTTTGCAAATT
1 AAGGGTATTTCAGTAATTTTGCAAACT
* *
76437656 GATGGTATTTCAGTAATTTTGCAAACT
1 AAGGGTATTTCAGTAATTTTGCAAACT
* * *
76437683 AAGGGTATTTCGGTAATTTGGTAAACT
1 AAGGGTATTTCAGTAATTTTGCAAACT
76437710 AA
1 AA
76437712 AGTACTCTAA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTCAGTAATTTTGCAAACT
Found at i:76437717 original size:107 final size:107
Alignment explanation
Indices: 76437521--76437717 Score: 252
Period size: 107 Copynumber: 1.8 Consensus size: 107
76437511 TTCTACCCTA
* * *
76437521 CAAGGGTATTTTAGTAATTCTACAAATCGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTC
1 CAAGGGTATTTCAGTAATTCTACAAATCGAGGGTATTTCAGTAATTTTACAAACAACGGTATTTC
* **
76437586 GGTAATTTTATAAATCGATGGTACTTTGGTAATTTTAAAAGT
66 GGTAATTTGATAAATCGAAAGTACTTTGGTAATTTTAAAAGT
* * * * * *
76437628 CAAGGGTATTTCAGTAATTTTGCAAATTGATGGTATTTCAGTAATTTTGCAAACTAAGGGTATTT
1 CAAGGGTATTTCAGTAATTCTACAAATCGAGGGTATTTCAGTAATTTTACAAAC-AACGGTATTT
* *
76437693 CGGTAATTTGGTAAA-CTAAAGTACT
65 CGGTAATTTGATAAATCGAAAGTACT
76437718 CTAAACAGGG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
107 54 0.72
108 21 0.28
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (107 bp):
CAAGGGTATTTCAGTAATTCTACAAATCGAGGGTATTTCAGTAATTTTACAAACAACGGTATTTC
GGTAATTTGATAAATCGAAAGTACTTTGGTAATTTTAAAAGT
Found at i:76438776 original size:40 final size:40
Alignment explanation
Indices: 76438727--76438823 Score: 117
Period size: 40 Copynumber: 2.4 Consensus size: 40
76438717 GCTATCGCGG
* *
76438727 AATCGCACACTTAGTGCCTCA-TATAGCTGAAGCTATTCCA
1 AATCGCACACTTAGTGCCT-ATTATAGCCGAAACTATTCCA
* *
76438767 ATTCGCACACTTAGTG-CTATTTATAGCCGAAACTATTTCA
1 AATCGCACACTTAGTGCCTA-TTATAGCCGAAACTATTCCA
*
76438807 AATCACACACTTAGTGC
1 AATCGCACACTTAGTGC
76438824 AGAACATAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
38 1 0.02
39 2 0.04
40 45 0.94
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (40 bp):
AATCGCACACTTAGTGCCTATTATAGCCGAAACTATTCCA
Found at i:76441871 original size:42 final size:42
Alignment explanation
Indices: 76441759--76441873 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 42
76441749 TACCATACCA
**** *
76441759 ATGCCATATCCCAAATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAAATATGGTCTTACACAAAATCTCATAGCG
* **
76441801 ATTCCAATATCCCAGCTATGGTCTTACACAAAATCTCATAGCG
1 ATGCC-ATATCCCAAATATGGTCTTACACAAAATCTCATAGCG
*
76441844 ATGCCATATCCCAAATATGGTCATACACAA
1 ATGCCATATCCCAAATATGGTCTTACACAA
76441874 CCTTAATGTC
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 26 0.43
43 34 0.57
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGGTCTTACACAAAATCTCATAGCG
Found at i:76446372 original size:48 final size:46
Alignment explanation
Indices: 76446314--76446615 Score: 295
Period size: 48 Copynumber: 6.3 Consensus size: 46
76446304 AAGACTAGGC
* *
76446314 CTGGGACATGGCATCAACGATGGTATATGTGGCTATGTAAGACCATGT
1 CTGGGACATGGCATCAGCGAT-G-ATATGTGGCAATGTAAGACCATGT
*
76446362 CTGGGACATGGCATC-GACGATGATATGTGTGCCA-GTAAAAGACCATGT
1 CTGGGACATGGCATCAG-CGATGATATGTG-GCAATGT--AAGACCATGT
* * * *
76446410 CTGGGACATGGTATCGGCGATAATATGTGTGCCAATGCAAGACCATGT
1 CTGGGACATGGCATCAGCGATGATATGTG-G-CAATGTAAGACCATGT
* *
76446458 TTGGGATATGGCATCAGCGATGATATGTGTGCAAGTGTAAGACCATGT
1 CTGGGACATGGCATCAGCGATGATATGTG-GCAA-TGTAAGACCATGT
* * *
76446506 CTAGGACATGGCATCAGCGATGATATCTGTGCCAGTGTAAGACCATGT
1 CTGGGACATGGCATCAGCGATGATA--TGTGGCAATGTAAGACCATGT
* * * *
76446554 CTGGGACATGGCATTAGCGCTGATATGTGG-ATTCATGTAAAACTATGT
1 CTGGGACATGGCATCAGCGATGATATGTGGCA---ATGTAAGACCATGT
*
76446602 CAGGGACATGGCAT
1 CTGGGACATGGCAT
76446616 TGGTACTTTA
Statistics
Matches: 216, Mismatches: 25, Indels: 26
0.81 0.09 0.10
Matches are distributed among these distances:
45 1 0.00
46 13 0.06
47 7 0.03
48 185 0.86
49 5 0.02
50 5 0.02
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.26
Consensus pattern (46 bp):
CTGGGACATGGCATCAGCGATGATATGTGGCAATGTAAGACCATGT
Found at i:76446469 original size:96 final size:96
Alignment explanation
Indices: 76446317--76446582 Score: 327
Period size: 96 Copynumber: 2.8 Consensus size: 96
76446307 ACTAGGCCTG
* ** * * * *
76446317 GGACATGGCATCAACGATGGTATATGTGGCTATGTAAGACCATGTCTGGGACATGGCATC-GACG
1 GGACATGGCATCAGCGATAATATCTGTGCCAATGCAAGACCATGTCTGGGACATGGCATCAG-CG
* *
76446381 ATGATATGTGTGCCAGTAAAAGACCATGTCTG
65 ATGATATGTGTGCAAGTAAAAGACCATGTCTA
* * * * *
76446413 GGACATGGTATCGGCGATAATATGTGTGCCAATGCAAGACCATGTTTGGGATATGGCATCAGCGA
1 GGACATGGCATCAGCGATAATATCTGTGCCAATGCAAGACCATGTCTGGGACATGGCATCAGCGA
**
76446478 TGATATGTGTGCAAGTGTAAGACCATGTCTA
66 TGATATGTGTGCAAGTAAAAGACCATGTCTA
* * * * *
76446509 GGACATGGCATCAGCGATGATATCTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTAGCGC
1 GGACATGGCATCAGCGATAATATCTGTGCCAATGCAAGACCATGTCTGGGACATGGCATCAGCGA
76446574 TGATATGTG
66 TGATATGTG
76446583 GATTCATGTA
Statistics
Matches: 144, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
96 143 0.99
97 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (96 bp):
GGACATGGCATCAGCGATAATATCTGTGCCAATGCAAGACCATGTCTGGGACATGGCATCAGCGA
TGATATGTGTGCAAGTAAAAGACCATGTCTA
Found at i:76446580 original size:144 final size:144
Alignment explanation
Indices: 76446315--76446582 Score: 380
Period size: 144 Copynumber: 1.9 Consensus size: 144
76446305 AGACTAGGCC
* *
76446315 TGGGACATGGCATCAACGATGGTATATGTGGCTATGTAAGACCATGTCTGGGACATGGCATCGAC
1 TGGGACATGGCATCAACGATGGTATATGTGGCAATGTAAGACCATGTCTAGGACATGGCATCGAC
* * *
76446380 GATGATATGTGTGCCAGTAAAAGACCATGTCTGGGACATGGTATCGGCGATAATATGTGTGCCAA
66 GATGATATCTGTGCCAGTAAAAGACCATGTCTGGGACATGGCATCAGCGATAATATGTGTGCCAA
76446445 TGCAAGACCATGTT
131 TGCAAGACCATGTT
* *
76446459 TGGGATATGGCATCAGCGAT-G-ATATGTGTGCAAGTGTAAGACCATGTCTAGGACATGGCATC-
1 TGGGACATGGCATCAACGATGGTATATGTG-GCAA-TGTAAGACCATGTCTAGGACATGGCATCG
** * * *
76446521 AGCGATGATATCTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTAGCGCTGATATGTG
64 A-CGATGATATCTGTGCCAGTAAAAGACCATGTCTGGGACATGGCATCAGCGATAATATGTG
76446583 GATTCATGTA
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
142 7 0.06
143 5 0.05
144 97 0.89
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (144 bp):
TGGGACATGGCATCAACGATGGTATATGTGGCAATGTAAGACCATGTCTAGGACATGGCATCGAC
GATGATATCTGTGCCAGTAAAAGACCATGTCTGGGACATGGCATCAGCGATAATATGTGTGCCAA
TGCAAGACCATGTT
Found at i:76446613 original size:144 final size:144
Alignment explanation
Indices: 76446316--76446615 Score: 358
Period size: 144 Copynumber: 2.1 Consensus size: 144
76446306 GACTAGGCCT
* *
76446316 GGGACATGGCATCAACGATGGTATATGTGGCTATGTAAGACCATGTCTGGGACATGGCATCGACG
1 GGGACATGGCATCAACGATGGTATATGTGGCAATGTAAGACCATGTCTAGGACATGGCATCGACG
* * *
76446381 ATGATATGTGTGCCAGTAAAAGACCATGTCTGGGACATGGTATCGGCGATAATATGTGTGCCAAT
66 ATGATATCTGTGCCAGTAAAAGACCATGTCTGGGACATGGCATCAGCGATAATATGTGTGCCAAT
* **
76446446 GCAAGACCATGTTT
131 GCAAAACCATGTCA
* *
76446460 GGGATATGGCATCAGCGAT-G-ATATGTGTGCAAGTGTAAGACCATGTCTAGGACATGGCATC-A
1 GGGACATGGCATCAACGATGGTATATGTG-GCAA-TGTAAGACCATGTCTAGGACATGGCATCGA
** * * *
76446522 GCGATGATATCTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTAGCGCTGATATGTG-GAT
64 -CGATGATATCTGTGCCAGTAAAAGACCATGTCTGGGACATGGCATCAGCGATAATATGTGTG--
* * *
76446586 TC-ATGTAAAACTATGTCA
126 CCAATGCAAAACCATGTCA
76446604 GGGACATGGCAT
1 GGGACATGGCAT
76446616 TGGTACTTTA
Statistics
Matches: 132, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
142 7 0.05
143 6 0.05
144 118 0.89
145 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (144 bp):
GGGACATGGCATCAACGATGGTATATGTGGCAATGTAAGACCATGTCTAGGACATGGCATCGACG
ATGATATCTGTGCCAGTAAAAGACCATGTCTGGGACATGGCATCAGCGATAATATGTGTGCCAAT
GCAAAACCATGTCA
Found at i:76448922 original size:34 final size:34
Alignment explanation
Indices: 76448879--76448946 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
76448869 ATACGCTTGG
* *
76448879 GAATGTGTATCTACTGAAGCCGTCATGTGTAAAA
1 GAATGTGTATCTACCGAAGCCATCATGTGTAAAA
76448913 GAATGTGTATCTACCGAAGCCATCATGTGTAAAA
1 GAATGTGTATCTACCGAAGCCATCATGTGTAAAA
76448947 AATTTAAGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (34 bp):
GAATGTGTATCTACCGAAGCCATCATGTGTAAAA
Found at i:76454394 original size:47 final size:46
Alignment explanation
Indices: 76454150--76454459 Score: 302
Period size: 48 Copynumber: 6.5 Consensus size: 46
76454140 AAGTGTACCT
* * * *
76454150 ATGTAAGACCATGTCTGGGACATCGCATTGACAATGATATAAGTG-CC
1 ATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT--GTGTCC
* * * * *
76454197 TGTGTAAGACCATCTTTGGGACATGGCATCGGTGATTATATGTGTGCC
1 -ATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGT-CC
* *
76454245 AGTGTAAGGCCATGTCTGGGACATGGCATCGGCGATGATATATGTGCC
1 A-TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGT-CC
* ** ** *
76454293 AATGTAAGACCATGTCTGGGGCATCACATCGATGATGATATGTGTGCA
1 -ATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGT-CC
*
76454341 AGTGTAAGACCATGTCT-GGACATGGCATCGGCGATGATATGTGGATTC
1 A-TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGT-G-TCC
*
76454389 ATGTAAGACCATGTCT-GGACATGGCATCGGCGATGATATGTTGATTC
1 ATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG-TG-TCC
*
76454436 ATGTAAGACCATGTCTTGGACATG
1 ATGTAAGACCATGTCTGGGACATG
76454460 TCATTGGTAC
Statistics
Matches: 222, Mismatches: 31, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
46 3 0.01
47 81 0.36
48 136 0.61
49 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (46 bp):
ATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTCC
Found at i:76456091 original size:48 final size:48
Alignment explanation
Indices: 76456020--76456178 Score: 194
Period size: 48 Copynumber: 3.3 Consensus size: 48
76456010 GGTGTTACAG
76456020 ACATGGTCTTACACTGGCTCTCATTACATTGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTGGCTCTCATTACATTGCCGATGCCATGTTCCAA
* * * * ** * *
76456068 ACATGGTCTTACAATGGTTCTCA-TATCGTGGGTGATGCCATGTCCCAG
1 ACATGGTCTTACACTGGCTCTCATTA-CATTGCCGATGCCATGTTCCAA
* * *
76456116 ACATGGTCTTACGCTAGCTCTCATTACATTGTCGATGCCATGTTCCAA
1 ACATGGTCTTACACTGGCTCTCATTACATTGCCGATGCCATGTTCCAA
*
76456164 ACATGGTTTTACACT
1 ACATGGTCTTACACT
76456179 AGCACACATA
Statistics
Matches: 89, Mismatches: 20, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
47 2 0.02
48 85 0.96
49 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.33
Consensus pattern (48 bp):
ACATGGTCTTACACTGGCTCTCATTACATTGCCGATGCCATGTTCCAA
Found at i:76456189 original size:96 final size:96
Alignment explanation
Indices: 76456017--76456190 Score: 267
Period size: 96 Copynumber: 1.8 Consensus size: 96
76456007 AGGGGTGTTA
*
76456017 CAGACATGGTCTTACACTGGCTCTCATTACATTGCCGATGCCATGTTCCAAACATGGTCTTACAA
1 CAGACATGGTCTTACACTAGCTCTCATTACATTGCCGATGCCATGTTCCAAACATGGTCTTACAA
* ** *
76456082 TGGTTCTCATATCGTGGGTGATGCCATGTCC
66 TAGCACACATATCGTGGGTGATGCCATGTCC
* * * *
76456113 CAGACATGGTCTTACGCTAGCTCTCATTACATTGTCGATGCCATGTTCCAAACATGGTTTTACAC
1 CAGACATGGTCTTACACTAGCTCTCATTACATTGCCGATGCCATGTTCCAAACATGGTCTTACAA
76456178 TAGCACACATATC
66 TAGCACACATATC
76456191 ACCCAAATGT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 69 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.31
Consensus pattern (96 bp):
CAGACATGGTCTTACACTAGCTCTCATTACATTGCCGATGCCATGTTCCAAACATGGTCTTACAA
TAGCACACATATCGTGGGTGATGCCATGTCC
Found at i:76458096 original size:8 final size:8
Alignment explanation
Indices: 76458071--76458121 Score: 61
Period size: 8 Copynumber: 6.4 Consensus size: 8
76458061 ATGTATCAGT
76458071 AAAAGCC-
1 AAAAGCCG
76458078 AAAATGCCG
1 AAAA-GCCG
76458087 AAAAGCCG
1 AAAAGCCG
76458095 AAAAGCCG
1 AAAAGCCG
76458103 AAATA-CCG
1 AAA-AGCCG
*
76458111 AAAAGTCG
1 AAAAGCCG
76458119 AAA
1 AAA
76458122 GTTTGGCTAC
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
7 5 0.13
8 29 0.74
9 5 0.13
ACGTcount: A:0.53, C:0.22, G:0.20, T:0.06
Consensus pattern (8 bp):
AAAAGCCG
Found at i:76458106 original size:24 final size:24
Alignment explanation
Indices: 76458071--76458121 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
76458061 ATGTATCAGT
*
76458071 AAAAGCCAAAATGCCGAAAAGCCG
1 AAAAGCCAAAATACCGAAAAGCCG
* *
76458095 AAAAGCCGAAATACCGAAAAGTCG
1 AAAAGCCAAAATACCGAAAAGCCG
76458119 AAA
1 AAA
76458122 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.22, G:0.20, T:0.06
Consensus pattern (24 bp):
AAAAGCCAAAATACCGAAAAGCCG
Found at i:76458386 original size:29 final size:28
Alignment explanation
Indices: 76458331--76458445 Score: 140
Period size: 29 Copynumber: 4.0 Consensus size: 28
76458321 GTGAGCATGA
* * *
76458331 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
76458359 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
76458388 ATATATAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
76458417 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
76458445 A
1 A
76458446 GATACAGGTA
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
28 27 0.36
29 49 0.64
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:76466920 original size:39 final size:39
Alignment explanation
Indices: 76466866--76467016 Score: 248
Period size: 39 Copynumber: 3.9 Consensus size: 39
76466856 ATATATACGT
* *
76466866 GAGAATTATATCCGGACTTCAGGTCCGTAGGCTATAAGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATATGC
76466905 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATATGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATATGC
* * *
76466944 GAAAATTATATCTGGACTTCATGTCCGCAGGCTATATGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATATGC
*
76466983 GAGAATTATATCCGGACTTTAGGTCCGCAGGCTA
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTA
76467017 CGTGTTGGAC
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 103 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (39 bp):
GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATATGC
Found at i:76468765 original size:43 final size:42
Alignment explanation
Indices: 76468678--76468807 Score: 127
Period size: 42 Copynumber: 3.1 Consensus size: 42
76468668 AACTTAGTAC
* * * * * **
76468678 CATACCAATGCTATATCCCAGATATAGTCTTACATGGGATCT
1 CATACCGATGCCATAGCCCATATATGGTCTTACATGAAATCT
**
76468720 CATATTGATGCCAATAGCCCA-ACTATGGTCTTACATGAAATCT
1 CATACCGATGCC-ATAGCCCATA-TATGGTCTTACATGAAATCT
* * *
76468763 CATACCGATGTCATATCCCATATATGGTTTTACATGAAATCT
1 CATACCGATGCCATAGCCCATATATGGTCTTACATGAAATCT
76468805 CAT
1 CAT
76468808 CTAACCCTAA
Statistics
Matches: 72, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 38 0.53
43 34 0.47
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (42 bp):
CATACCGATGCCATAGCCCATATATGGTCTTACATGAAATCT
Found at i:76468799 original size:42 final size:42
Alignment explanation
Indices: 76468690--76468807 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 42
76468680 TACCAATGCT
* ** **
76468690 ATATCCCAGATATAGTCTTACATGGGATCTCATATTGATGCCA
1 ATATCCCA-ATATGGTCTTACATGAAATCTCATACCGATGCCA
* *
76468733 ATAGCCCAACTATGGTCTTACATGAAATCTCATACCGATGTC-
1 ATATCCCAA-TATGGTCTTACATGAAATCTCATACCGATGCCA
*
76468775 ATATCCCATATATGGTTTTACATGAAATCTCAT
1 ATATCCCA-ATATGGTCTTACATGAAATCTCAT
76468808 CTAACCCTAA
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 30 0.47
43 34 0.53
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (42 bp):
ATATCCCAATATGGTCTTACATGAAATCTCATACCGATGCCA
Found at i:76473659 original size:15 final size:15
Alignment explanation
Indices: 76473639--76473686 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 15
76473629 GGAAATTCAC
76473639 TTATGTTTTATTTTA
1 TTATGTTTTATTTTA
76473654 TTATGTTTTCATTATTATA
1 TTATGTTTT-A-T-TT-TA
*
76473673 TTATTTTTTATTTT
1 TTATGTTTTATTTT
76473687 TACGTTAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
15 10 0.36
16 3 0.11
17 2 0.07
18 3 0.11
19 10 0.36
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.73
Consensus pattern (15 bp):
TTATGTTTTATTTTA
Found at i:76475448 original size:13 final size:13
Alignment explanation
Indices: 76475430--76475463 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
76475420 AATTTGGAGC
76475430 CACACGGGTAAGG
1 CACACGGGTAAGG
76475443 CACACGGGTAAGG
1 CACACGGGTAAGG
76475456 CACACGGG
1 CACACGGG
76475464 CGTCTGTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.29, C:0.26, G:0.38, T:0.06
Consensus pattern (13 bp):
CACACGGGTAAGG
Found at i:76479506 original size:24 final size:25
Alignment explanation
Indices: 76479467--76479519 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
76479457 GCTCCTCCTG
76479467 AGCTGATAAACAGTAAGCTCTATTA
1 AGCTGATAAACAGTAAGCTCTATTA
* * *
76479492 AGCTGA-AAACGGTAAGCTTTATTG
1 AGCTGATAAACAGTAAGCTCTATTA
76479516 AGCT
1 AGCT
76479520 AAATAGTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (25 bp):
AGCTGATAAACAGTAAGCTCTATTA
Found at i:76479553 original size:23 final size:22
Alignment explanation
Indices: 76479515--76479565 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 22
76479505 AAGCTTTATT
* *
76479515 GAGCTAAATAGTAAGCTCTTAC
1 GAGCTGAATAGTAAGCTCATAC
76479537 GAGCTGAATCAGTAAGCTCATAC
1 GAGCTGAAT-AGTAAGCTCATAC
76479560 GAGCTG
1 GAGCTG
76479566 TGGTGAGTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (22 bp):
GAGCTGAATAGTAAGCTCATAC
Found at i:76482734 original size:292 final size:292
Alignment explanation
Indices: 76482203--76482752 Score: 985
Period size: 292 Copynumber: 1.9 Consensus size: 292
76482193 TCTATGTTTG
* * *
76482203 TGTAACACACCGTACCCGATACCGTTGCCGGAGTCGGACACGAGGGGTTCACAGACTACATTCAC
1 TGTAACACACCGTACCCGAGACCGTTGCCAGAGTCGGACACGAGGGGTTCACAAACTACATTCAC
76482268 TTACTTGCACAGTTCATTTTAAAAATTTCCAGGCAATTGGCTAACTGTGTCACTGTCACCTTAAA
66 TTACTTGCACAGTTCATTTTAAAAATTTCCAGGCAATTGGCTAACTGTGTCACTGTCACCTTAAA
* *
76482333 AATCATATCTTGAGTTCTAAAACTCAAAAATTAGTTTCGTAATTTTTCCCTGAAACTAGACTCAT
131 AATCATATCTTGAGTTCTAAAACTCAAAAATCAGTTTCGTAATTTTTCCCTAAAACTAGACTCAT
* *
76482398 ATTTCCATCTACATATTTTTTTTCTAGAATTTTTGGTTGGGCCAATTAGTACAGTTTATTAGTCA
196 ATGTCCATCTACATATTTTTTTTCTAGAATTTTTGGTAGGGCCAATTAGTACAGTTTATTAGTCA
76482463 ACACTAAACCGTAGCTCTGATACCAATAAAAT
261 ACACTAAACCGTAGCTCTGATACCAATAAAAT
*
76482495 TGTAACACCCCGTACCCGAGACCGTTGCCAGAGTCGGACACGAGGGGTTCACAAACTACATTCAC
1 TGTAACACACCGTACCCGAGACCGTTGCCAGAGTCGGACACGAGGGGTTCACAAACTACATTCAC
* *
76482560 TTACTTGCACAGTTCATTTTAGAAATTTCCAGGCAGTTGGCTAACTGTGTCACTGTCACCTTAAA
66 TTACTTGCACAGTTCATTTTAAAAATTTCCAGGCAATTGGCTAACTGTGTCACTGTCACCTTAAA
76482625 AATCATATCTTGAGTTCTAAAACT-AGAAAATCAGTTTCGTAATTTTTCCCTAAAACTAGACTCA
131 AATCATATCTTGAGTTCTAAAACTCA-AAAATCAGTTTCGTAATTTTTCCCTAAAACTAGACTCA
*
76482689 TATGTCCATCTACATATTTTTTTTCTAGAATTTTTTGTAGGGCCAATTAGTACAGTTTATTAGT
195 TATGTCCATCTACATATTTTTTTTCTAGAATTTTTGGTAGGGCCAATTAGTACAGTTTATTAGT
76482753 AAACTTCTCC
Statistics
Matches: 246, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
291 1 0.00
292 245 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.33
Consensus pattern (292 bp):
TGTAACACACCGTACCCGAGACCGTTGCCAGAGTCGGACACGAGGGGTTCACAAACTACATTCAC
TTACTTGCACAGTTCATTTTAAAAATTTCCAGGCAATTGGCTAACTGTGTCACTGTCACCTTAAA
AATCATATCTTGAGTTCTAAAACTCAAAAATCAGTTTCGTAATTTTTCCCTAAAACTAGACTCAT
ATGTCCATCTACATATTTTTTTTCTAGAATTTTTGGTAGGGCCAATTAGTACAGTTTATTAGTCA
ACACTAAACCGTAGCTCTGATACCAATAAAAT
Found at i:76483257 original size:252 final size:251
Alignment explanation
Indices: 76482758--76483257 Score: 865
Period size: 252 Copynumber: 2.0 Consensus size: 251
76482748 TTAGTAAACT
*
76482758 TCTCCCATGTTACAGGGATTGACTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGTA
1 TCTCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGTA
76482823 CAGGGCTTCAATACTGATGCCGTTTGTTTCTATAGAAACTACACTCAAAAGGAATCCATACATAT
66 CAGGGCTTCAATACTGATGCCGTTTGTTTCTATAGAAACTACACTCAAAAGGAATCCATACATAT
*
76482888 ATGGCATGACTTCTAAATGTCTCTGGTTAATTTATAATGAATTTCCAAAGTCAGATCAGGGGATC
131 ATGGAATGACTTCTAAATGTCTCTGGTTAATTTATAATGAATTTCCAAAGTCAGATCAGGGGATC
*
76482953 CAGAAACCGATCTAACCCTGTCTCACGAAAACTTTAACATCTCATAATATACTACG
196 CAGAAACCGATCTAACCCTGTCTCACGAAAACTTTAACATATCATAATATACTACG
*
76483009 TCTCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTATGACTTGGATATCTCCCTGTA
1 TCTCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGTA
* * * * *
76483074 CAGGGCTTCAATACTGATGGCGTTTGTTTCTCTAGAAACTAGACTCAAATAGGAATCTATATATA
66 CAGGGCTTCAATACTGATGCCGTTTGTTTCTATAGAAACTACACTCAAA-AGGAATCCATACATA
* *
76483139 TATGGAATGACTTCTAAATGTCTCTGGTTAATTTATAATGAATTTTCAAAGTCATATCAGGGGAT
130 TATGGAATGACTTCTAAATGTCTCTGGTTAATTTATAATGAATTTCCAAAGTCAGATCAGGGGAT
* * *
76483204 CCAGAAACCGTTCTAGCCCTGTCTCACGAAAACTTTAACATATCATCATATACT
195 CCAGAAACCGATCTAACCCTGTCTCACGAAAACTTTAACATATCATAATATACT
76483258 GTTCATATGA
Statistics
Matches: 234, Mismatches: 14, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
251 109 0.47
252 125 0.53
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (251 bp):
TCTCCCATGTTACAGGGATCGACTACACTGACCTTTGCGCATTACGACTTGGATATCTCCCTGTA
CAGGGCTTCAATACTGATGCCGTTTGTTTCTATAGAAACTACACTCAAAAGGAATCCATACATAT
ATGGAATGACTTCTAAATGTCTCTGGTTAATTTATAATGAATTTCCAAAGTCAGATCAGGGGATC
CAGAAACCGATCTAACCCTGTCTCACGAAAACTTTAACATATCATAATATACTACG
Found at i:76490824 original size:79 final size:81
Alignment explanation
Indices: 76490688--76490872 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
76490678 TTGAATGATG
* *
76490688 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
76490752 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
76490767 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
76490829 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
76490847 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76490873 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:76490886 original size:40 final size:40
Alignment explanation
Indices: 76490689--76490872 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
76490679 TGAATGATGT
* * * *
76490689 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
76490729 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
76490769 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
76490807 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76490848 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
76490873 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:76490894 original size:79 final size:79
Alignment explanation
Indices: 76490689--76490905 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 79
76490679 TGAATGATGT
** * * * ** *
76490689 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCAAT
*
76490752 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
76490769 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
*
76490834 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
76490848 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
76490906 TACGTGATTT
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 70 0.61
80 42 0.37
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
GCGAGATACTAATA
Found at i:76492510 original size:19 final size:19
Alignment explanation
Indices: 76492486--76492522 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
76492476 AATTAATTCT
76492486 ATTTCGTTTAATAGATTTG
1 ATTTCGTTTAATAGATTTG
76492505 ATTTCGTTTAATAGATTT
1 ATTTCGTTTAATAGATTT
76492523 TATTCGATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.05, G:0.14, T:0.54
Consensus pattern (19 bp):
ATTTCGTTTAATAGATTTG
Found at i:76494400 original size:30 final size:30
Alignment explanation
Indices: 76494364--76494424 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
76494354 CACATTGTAG
*
76494364 GAGCCACAAGAGT-TGGATACACGGCCATGT
1 GAGCCACAAG-GTCTGGACACACGGCCATGT
* *
76494394 GAGCCACATGGTCTGGACACACGGTCATGT
1 GAGCCACAAGGTCTGGACACACGGCCATGT
76494424 G
1 G
76494425 CCAGACCGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.26, C:0.25, G:0.31, T:0.18
Consensus pattern (30 bp):
GAGCCACAAGGTCTGGACACACGGCCATGT
Found at i:76495521 original size:20 final size:21
Alignment explanation
Indices: 76495480--76495533 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 21
76495470 GAACACTTTC
76495480 TTTTTA-TTAA-TTTATTAAT
1 TTTTTATTTAATTTTATTAAT
76495499 TTTTTATTTAATTTTA-T-AT
1 TTTTTATTTAATTTTATTAAT
76495518 TTTTTAAATTTAATTT
1 TTTTT--ATTTAATTT
76495534 CTACATTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
19 13 0.42
20 5 0.16
21 13 0.42
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTTATTTAATTTTATTAAT
Found at i:76496232 original size:43 final size:43
Alignment explanation
Indices: 76496171--76496257 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
76496161 TACAAATATA
76496171 TTATGCTCATGTCAATTTCTTAGGCAACAAATATCATAAAATT
1 TTATGCTCATGTCAATTTCTTAGGCAACAAATATCATAAAATT
76496214 TTATGCTCATGTCAATTTCTTAGGCAACAAATATCATAAAATT
1 TTATGCTCATGTCAATTTCTTAGGCAACAAATATCATAAAATT
76496257 T
1 T
76496258 ACTCACATTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (43 bp):
TTATGCTCATGTCAATTTCTTAGGCAACAAATATCATAAAATT
Found at i:76500972 original size:46 final size:46
Alignment explanation
Indices: 76500869--76501132 Score: 227
Period size: 46 Copynumber: 5.7 Consensus size: 46
76500859 GTCCATCTGT
* *
76500869 GCCGATACATGTCCCAGACATGTCTTACACTAGC-AA-ATCTCGTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTAACATCTCG-AG
* * *
76500913 GCTGACGCATGTCCCAGACATGTCTGACACTGGCTAACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTAACATCTCGAG
* *
76500959 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTAATAT-T-GTG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGG--CTAACATCTCGAG
* * *** * * *
76501005 GCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTAACATCTCGAG
* * * * *
76501051 GCCAATGTAATGTCCCAGACATGGTCTTACACTGGTTATCATAAT--ATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTAACAT-CTCGA-G
*
76501099 GCCAATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
76501133 ACACAAATCT
Statistics
Matches: 177, Mismatches: 32, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
44 31 0.18
45 4 0.02
46 86 0.49
47 28 0.16
48 27 0.15
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTAACATCTCGAG
Found at i:76507063 original size:46 final size:44
Alignment explanation
Indices: 76507012--76507219 Score: 151
Period size: 44 Copynumber: 4.6 Consensus size: 44
76507002 GTCGATGCTG
* *
76507012 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCAT-GCTGATGCA
1 TGTCCCAGACAGGTCTTACACTAG-CACATCT---CATAGCCGATGCA
*
76507058 TGTCCCAGACAGGTCTTACACTAGCACATCTCGTAGCCGATGCA
1 TGTCCCAGACAGGTCTTACACTAGCACATCTCATAGCCGATGCA
* * *
76507102 TGTCCCAGACATGTCTTACACTAGCCCTCATCTCA-ATGCCAATGC-
1 TGTCCCAGACAGGTCTTACACTAG--CACATCTCATA-GCCGATGCA
* * * * *
76507147 --CCCCAGACATGGTCTTACACTGGTTATCATAAT-ATGGCCGATGCA
1 TGTCCCAGACA-GGTCTTACACTAG-CA-CAT-CTCATAGCCGATGCA
* *
76507192 TGTCCCAGACATGTCTTACACTGGCACA
1 TGTCCCAGACAGGTCTTACACTAGCACA
76507220 CAAATCTCAT
Statistics
Matches: 131, Mismatches: 19, Indels: 26
0.74 0.11 0.15
Matches are distributed among these distances:
43 10 0.08
44 55 0.42
45 3 0.02
46 54 0.41
47 9 0.07
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (44 bp):
TGTCCCAGACAGGTCTTACACTAGCACATCTCATAGCCGATGCA
Found at i:76514285 original size:155 final size:155
Alignment explanation
Indices: 76514003--76514312 Score: 541
Period size: 155 Copynumber: 2.0 Consensus size: 155
76513993 AGTGGAAATT
*
76514003 GGGGGCTTTCATAGTTATGAAAAATGATCAGCATGCCATAAAACATAAGAAAATAGGATGAAGTT
1 GGGGGCTGTCATAGTTATGAAAAATGATCAGCATGCCATAAAACATAAGAAAATAGGATGAAGTT
* * *
76514068 TAATTTTCGAGCCTTGGGGCAAAAGTGCAAATATGCAAAAGTTTAGGGGTCAAAATGTAAATTTG
66 TAATTTTCAAGCCTTGAGGCAAAAGTGCAAATATGCAAAAGTTTAGGGGTCAAAATATAAATTTG
* *
76514133 TAAAAATATGATTTTTAGACTCATA
131 TAAAAATATAATTTTTAGACCCATA
76514158 GGGGGCTGTCATAGTTATGAAAAATGATCAGCATGCCATAAAACATAAGAAAATAGGATGAAGTT
1 GGGGGCTGTCATAGTTATGAAAAATGATCAGCATGCCATAAAACATAAGAAAATAGGATGAAGTT
76514223 TAA-TTTCTAAGCCTTGAGGCAAAAGTGCAAATATGCAAAAGTTTAGGGGTCAAAATATAAATTT
66 TAATTTTC-AAGCCTTGAGGCAAAAGTGCAAATATGCAAAAGTTTAGGGGTCAAAATATAAATTT
*
76514287 GTAAAAATTTAATTTTTAGACCCATA
130 GTAAAAATATAATTTTTAGACCCATA
76514313 TGAATATTTT
Statistics
Matches: 147, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
154 4 0.03
155 143 0.97
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (155 bp):
GGGGGCTGTCATAGTTATGAAAAATGATCAGCATGCCATAAAACATAAGAAAATAGGATGAAGTT
TAATTTTCAAGCCTTGAGGCAAAAGTGCAAATATGCAAAAGTTTAGGGGTCAAAATATAAATTTG
TAAAAATATAATTTTTAGACCCATA
Found at i:76518165 original size:31 final size:30
Alignment explanation
Indices: 76518082--76518180 Score: 103
Period size: 32 Copynumber: 3.2 Consensus size: 30
76518072 TATTATTCAC
*
76518082 TATTTTA-TTTTCTTATTATTT-TTATTTTT
1 TATTTTATTTTTCCTATT-TTTATTATTTTT
*
76518111 TATTTTATTTTATCTCTACTTTTATTATTTTT
1 TATTTTATTTT-TC-CTATTTTTATTATTTTT
* *
76518143 TCTTATTATTTTTCCTATTTTTATTATTATTA
1 TATT-TTATTTTTCCTATTTTTATTATT-TTT
76518175 TATTTT
1 TATTTT
76518181 GAACTATTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
29 7 0.12
30 3 0.05
31 20 0.34
32 21 0.36
33 7 0.12
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (30 bp):
TATTTTATTTTTCCTATTTTTATTATTTTT
Found at i:76519831 original size:6 final size:6
Alignment explanation
Indices: 76519817--76519869 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
76519807 TTAATTATTA
* * *
76519817 TTTTCT TTTTAT TTTCAT TTTCAT TTTTAT TTTTAGTT GTTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA--T -TTTTAT TTTTAT
76519868 TT
1 TT
76519870 CTTAAACTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
6 34 0.83
7 1 0.02
8 1 0.02
9 5 0.12
ACGTcount: A:0.13, C:0.06, G:0.04, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:76519845 original size:18 final size:17
Alignment explanation
Indices: 76519816--76519849 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
76519806 CTTAATTATT
76519816 ATTTTCTTTTTATTTTC
1 ATTTTCTTTTTATTTTC
76519833 ATTTTCATTTTTATTTT
1 ATTTTC-TTTTTATTTT
76519850 TAGTTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (17 bp):
ATTTTCTTTTTATTTTC
Found at i:76520768 original size:30 final size:27
Alignment explanation
Indices: 76520705--76520769 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 27
76520695 TTCTTGATTT
76520705 ATATTATAAAAATATTATTTAATTAAA
1 ATATTATAAAAATATTATTTAATTAAA
* * *
76520732 ACATTATAAATTATATTAATTTAAATTAAG
1 ATATTATAAA-AATATT-ATTT-AATTAAA
76520762 ATATTATA
1 ATATTATA
76520770 TTAAAGGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 9 0.29
28 5 0.16
29 4 0.13
30 13 0.42
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (27 bp):
ATATTATAAAAATATTATTTAATTAAA
Found at i:76521975 original size:17 final size:18
Alignment explanation
Indices: 76521953--76521988 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
76521943 TAAATGAGTT
76521953 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
76521970 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
76521988 A
1 A
76521989 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:76527750 original size:20 final size:20
Alignment explanation
Indices: 76527722--76527770 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
76527712 ATATATTCTG
* *
76527722 ATTTTATTTTATTCTAATCA
1 ATTTGATTTGATTCTAATCA
*
76527742 ATTTGATTTGATTTTAATCA
1 ATTTGATTTGATTCTAATCA
76527762 ATTTGATTT
1 ATTTGATTT
76527771 AATTGCTACT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (20 bp):
ATTTGATTTGATTCTAATCA
Found at i:76528258 original size:22 final size:23
Alignment explanation
Indices: 76528211--76528263 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
76528201 AAATTATTCA
76528211 ATTTAGTTTATTTTATACTTAAAT
1 ATTT-GTTTATTTTATACTTAAAT
* *
76528235 ATTTGTTTA-TTTATATTTATAT
1 ATTTGTTTATTTTATACTTAAAT
76528257 ATTTGTT
1 ATTTGTT
76528264 CGCCAACATG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 18 0.67
23 5 0.19
24 4 0.15
ACGTcount: A:0.28, C:0.02, G:0.06, T:0.64
Consensus pattern (23 bp):
ATTTGTTTATTTTATACTTAAAT
Found at i:76528586 original size:41 final size:41
Alignment explanation
Indices: 76528535--76528673 Score: 163
Period size: 41 Copynumber: 3.4 Consensus size: 41
76528525 CAAAAATTAT
* **
76528535 AAAACACAGAGCAATAGCGGCG-TTTTACCAAAAACGCCGCTA
1 AAAAC-CAGAGCATTAGCGGCGCTTTT-CGTAAAACGCCGCTA
* *
76528577 AAAACCAGAGCATTAGCGGCGCTTCTGGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTCGTAAAACGCCGCTA
* * * *
76528618 AAAACAAAAGCATTAGCGACGCTTTTTGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTCGTAAAACGCCGCTA
*
76528659 AAAACCATAGCATTA
1 AAAACCAGAGCATTA
76528674 TTTATATTAA
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
41 76 0.90
42 8 0.10
ACGTcount: A:0.39, C:0.24, G:0.19, T:0.18
Consensus pattern (41 bp):
AAAACCAGAGCATTAGCGGCGCTTTTCGTAAAACGCCGCTA
Found at i:76530084 original size:14 final size:14
Alignment explanation
Indices: 76530065--76530108 Score: 79
Period size: 14 Copynumber: 3.1 Consensus size: 14
76530055 ATTTCTTGCT
76530065 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
*
76530079 TCTCTAAATCTCCT
1 TCTCTAAATCTCCA
76530093 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
76530107 TC
1 TC
76530109 CCTTTGATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.25, C:0.36, G:0.00, T:0.39
Consensus pattern (14 bp):
TCTCTAAATCTCCA
Found at i:76533228 original size:631 final size:631
Alignment explanation
Indices: 76532025--76533286 Score: 2479
Period size: 631 Copynumber: 2.0 Consensus size: 631
76532015 GAGAAAATGA
76532025 ACATATTAAACCTGGCAATCTATTTAATCACAACTTTAAACTTTTAATCCATTAATATAAAAACT
1 ACATATTAAACCTGGCAATCTATTTAATCACAACTTTAAACTTTTAATCCATTAATATAAAAACT
*
76532090 GTACTAATTATAGTTAAAATACCAGTACGGCATTTGTCATGTAATTTCATTATTTGGTTTCGAGG
66 GTACTAATTATAGTTAAAATACCAGTAAGGCATTTGTCATGTAATTTCATTATTTGGTTTCGAGG
76532155 GATAAAAGATATTCTGGATTCCTATTTTACCTTTTCGGCCTTTGTGCTAAATTTGTACCACCAGC
131 GATAAAAGATATTCTGGATTCCTATTTTACCTTTTCGGCCTTTGTGCTAAATTTGTACCACCAGC
76532220 CTTAATGGTCTCTCCCTTTCTTTATCATTTCTATTCTTGCTACTTAATTATCAAAAATGGGTGCA
196 CTTAATGGTCTCTCCCTTTCTTTATCATTTCTATTCTTGCTACTTAATTATCAAAAATGGGTGCA
76532285 CCAACAGACTCAGCCCTCAATCTCGATGAACAGATCTCGCAGCTGATGCAATGTAAGCCACTTTC
261 CCAACAGACTCAGCCCTCAATCTCGATGAACAGATCTCGCAGCTGATGCAATGTAAGCCACTTTC
76532350 GGAGCAGCAGGTACTTTTTTTTTTCACGATCTGTTTGTTTCTCAAGAAAGTATGGAAATTTTGAG
326 GGAGCAGCAGGTACTTTTTTTTTTCACGATCTGTTTGTTTCTCAAGAAAGTATGGAAATTTTGAG
76532415 CACTTAATTTAATTGTATAATTATTTTAATAGATTAGGCTATATTTGGCTGCAAAATGAATATCA
391 CACTTAATTTAATTGTATAATTATTTTAATAGATTAGGCTATATTTGGCTGCAAAATGAATATCA
76532480 AAACGATTTTGAATTGAATTTGTTTTAAGATATTATTCCAATAGCATTAGTTTCTATCGCCGTGT
456 AAACGATTTTGAATTGAATTTGTTTTAAGATATTATTCCAATAGCATTAGTTTCTATCGCCGTGT
76532545 GAATTTTTGCTGGTTATTTATTTCAAAAAGGCTGAGAGAGGCTTTTGTGTAACTGAGGTTTTCCA
521 GAATTTTTGCTGGTTATTTATTTCAAAAAGGCTGAGAGAGGCTTTTGTGTAACTGAGGTTTTCCA
76532610 CCTTAACAGATGAAATTTAGGCAGGTTGTTAAACTCTTTTGGTGAT
586 CCTTAACAGATGAAATTTAGGCAGGTTGTTAAACTCTTTTGGTGAT
*
76532656 ACATATTAAACCTGGCAATCTATTTAATCACAACTTTAAACTTTTAATCCATTACTATAAAAACT
1 ACATATTAAACCTGGCAATCTATTTAATCACAACTTTAAACTTTTAATCCATTAATATAAAAACT
*
76532721 TTACTAATTATAGTTAAAATACCAGTAAGGCATTTGTCATGTAATTTCATTATTTGGTTTCGAGG
66 GTACTAATTATAGTTAAAATACCAGTAAGGCATTTGTCATGTAATTTCATTATTTGGTTTCGAGG
76532786 GATAAAAGATATTCTGGATTCCTATTTTACCTTTTCGGCCTTTGTGCTAAATTTGTACCACCAGC
131 GATAAAAGATATTCTGGATTCCTATTTTACCTTTTCGGCCTTTGTGCTAAATTTGTACCACCAGC
76532851 CTTAATGGTCTCTCCCTTTCTTTATCATTTCTATTCTTGCTACTTAATTATCAAAAATGGGTGCA
196 CTTAATGGTCTCTCCCTTTCTTTATCATTTCTATTCTTGCTACTTAATTATCAAAAATGGGTGCA
*
76532916 CCAACAGACTCAGCCCTCAATCTCGATGAGCAGATCTCGCAGCTGATGCAATGTAAGCCACTTTC
261 CCAACAGACTCAGCCCTCAATCTCGATGAACAGATCTCGCAGCTGATGCAATGTAAGCCACTTTC
76532981 GGAGCAGCAGGTACTTTTTTTTTTCACGATCTGTTTGTTTCTCAAGAAAGTATGGAAATTTTGAG
326 GGAGCAGCAGGTACTTTTTTTTTTCACGATCTGTTTGTTTCTCAAGAAAGTATGGAAATTTTGAG
76533046 CACTTAATTTAATTGTATAATTATTTTAATAGATTAGGCTATATTTGGCTGCAAAATGAATATCA
391 CACTTAATTTAATTGTATAATTATTTTAATAGATTAGGCTATATTTGGCTGCAAAATGAATATCA
76533111 AAACGATTTTGAATTGAATTTGTTTTAAGATATTATTCCAATAGCATTAGTTTCTATCGCCGTGT
456 AAACGATTTTGAATTGAATTTGTTTTAAGATATTATTCCAATAGCATTAGTTTCTATCGCCGTGT
76533176 GAATTTTTGCTGGTTATTTATTTCAAAAAGGCTGAGAGAGGCTTTTGTGTAACTGAGGTTTTCCA
521 GAATTTTTGCTGGTTATTTATTTCAAAAAGGCTGAGAGAGGCTTTTGTGTAACTGAGGTTTTCCA
*
76533241 CCTTAACAGATGAAATTTAGGCAGGTTGTTCAACTCTTTTGGTGAT
586 CCTTAACAGATGAAATTTAGGCAGGTTGTTAAACTCTTTTGGTGAT
76533287 TTCTGAAGTG
Statistics
Matches: 626, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
631 626 1.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (631 bp):
ACATATTAAACCTGGCAATCTATTTAATCACAACTTTAAACTTTTAATCCATTAATATAAAAACT
GTACTAATTATAGTTAAAATACCAGTAAGGCATTTGTCATGTAATTTCATTATTTGGTTTCGAGG
GATAAAAGATATTCTGGATTCCTATTTTACCTTTTCGGCCTTTGTGCTAAATTTGTACCACCAGC
CTTAATGGTCTCTCCCTTTCTTTATCATTTCTATTCTTGCTACTTAATTATCAAAAATGGGTGCA
CCAACAGACTCAGCCCTCAATCTCGATGAACAGATCTCGCAGCTGATGCAATGTAAGCCACTTTC
GGAGCAGCAGGTACTTTTTTTTTTCACGATCTGTTTGTTTCTCAAGAAAGTATGGAAATTTTGAG
CACTTAATTTAATTGTATAATTATTTTAATAGATTAGGCTATATTTGGCTGCAAAATGAATATCA
AAACGATTTTGAATTGAATTTGTTTTAAGATATTATTCCAATAGCATTAGTTTCTATCGCCGTGT
GAATTTTTGCTGGTTATTTATTTCAAAAAGGCTGAGAGAGGCTTTTGTGTAACTGAGGTTTTCCA
CCTTAACAGATGAAATTTAGGCAGGTTGTTAAACTCTTTTGGTGAT
Found at i:76533933 original size:22 final size:23
Alignment explanation
Indices: 76533882--76533934 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
76533872 AGAAAACCAT
76533882 TTTAT-GTGTTAAATGCTGAAAA
1 TTTATGGTGTTAAATGCTGAAAA
*
76533904 TTTA-GGTGTTAAATGCTG-TAA
1 TTTATGGTGTTAAATGCTGAAAA
76533925 TTTATGGTGT
1 TTTATGGTGT
76533935 CTGAAAGTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 6 0.21
22 22 0.79
ACGTcount: A:0.28, C:0.04, G:0.23, T:0.45
Consensus pattern (23 bp):
TTTATGGTGTTAAATGCTGAAAA
Found at i:76534989 original size:43 final size:42
Alignment explanation
Indices: 76534850--76534997 Score: 161
Period size: 43 Copynumber: 3.5 Consensus size: 42
76534840 TTTAATTTTT
* *
76534850 ATGACATTTAGTTGCGTTTGTGGAAAAAGCGCCGCTAAAGGTC
1 ATGACTTTTAGCTGCGTTTGTGG-AAAAGCGCCGCTAAAGGTC
* * * *
76534893 TTGGCTTTTAGCAGCGTTTGTGGGAAAAGTGCCGCTAAAGGTC
1 ATGACTTTTAGCTGCGTTTGT-GGAAAAGCGCCGCTAAAGGTC
** * *
76534936 GCGACTTTTAGCTGCGTTTGTAAGAAAAGCGCCGCTAAAGGCC
1 ATGACTTTTAGCTGCGTTTGT-GGAAAAGCGCCGCTAAAGGTC
* *
76534979 ATGACCTTTAGCGGCGTTT
1 ATGACTTTTAGCTGCGTTT
76534998 TTTAAAATAA
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
43 84 0.98
44 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (42 bp):
ATGACTTTTAGCTGCGTTTGTGGAAAAGCGCCGCTAAAGGTC
Found at i:76546857 original size:24 final size:25
Alignment explanation
Indices: 76546815--76546876 Score: 72
Period size: 24 Copynumber: 2.4 Consensus size: 25
76546805 AATTGTATAG
*
76546815 TATTTATAATAAATTATTTCTATTAAT
1 TATTTATATTAAA--ATTTCTATTAAT
* *
76546842 TTTTTA-ATTAAAATTTTTATTAAT
1 TATTTATATTAAAATTTCTATTAAT
76546866 TATTTATATTA
1 TATTTATATTA
76546877 CAGTAAGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 16 0.53
25 4 0.13
26 5 0.17
27 5 0.17
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60
Consensus pattern (25 bp):
TATTTATATTAAAATTTCTATTAAT
Found at i:76546870 original size:13 final size:13
Alignment explanation
Indices: 76546826--76546876 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 13
76546816 ATTTATAATA
*
76546826 AATTATTTCTATT
1 AATTATTTTTATT
*
76546839 AATT-TTTTAATT
1 AATTATTTTTATT
*
76546851 AA-AATTTTTATT
1 AATTATTTTTATT
*
76546863 AATTATTTATATT
1 AATTATTTTTATT
76546876 A
1 A
76546877 CAGTAAGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
12 17 0.57
13 13 0.43
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (13 bp):
AATTATTTTTATT
Found at i:76548146 original size:22 final size:22
Alignment explanation
Indices: 76548121--76548164 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
76548111 TACAAGAAAA
76548121 AGCTTTTGAAATTAAAAGAATT
1 AGCTTTTGAAATTAAAAGAATT
76548143 AGCTTTTGAAATTAAAAGAATT
1 AGCTTTTGAAATTAAAAGAATT
76548165 TATCTCATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (22 bp):
AGCTTTTGAAATTAAAAGAATT
Found at i:76549240 original size:41 final size:41
Alignment explanation
Indices: 76549167--76549248 Score: 121
Period size: 41 Copynumber: 2.0 Consensus size: 41
76549157 AACAAAGACA
76549167 ATTCAATTATACATCTGCCACATTTGGATGAATCTAATTAT
1 ATTCAATTATACATCTGCCACATTTGGATGAATCTAATTAT
* * *
76549208 ATTCAATTATACATTTGGCACTTTTAGG-TGAATCTAATTAT
1 ATTCAATTATACATCTGCCACATTT-GGATGAATCTAATTAT
76549249 GTCTATTGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 35 0.95
42 2 0.05
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (41 bp):
ATTCAATTATACATCTGCCACATTTGGATGAATCTAATTAT
Found at i:76555392 original size:7 final size:7
Alignment explanation
Indices: 76555380--76555431 Score: 70
Period size: 7 Copynumber: 7.6 Consensus size: 7
76555370 TCAAGTTGTT
76555380 TAATAAA
1 TAATAAA
*
76555387 TAATAAG
1 TAATAAA
76555394 TAATAAA
1 TAATAAA
*
76555401 TGATAAA
1 TAATAAA
76555408 TAATAAA
1 TAATAAA
76555415 TAATAAA
1 TAATAAA
*
76555422 T-TTAAA
1 TAATAAA
76555428 TAAT
1 TAAT
76555432 TATATTTTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
6 5 0.13
7 33 0.87
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (7 bp):
TAATAAA
Found at i:76561398 original size:12 final size:12
Alignment explanation
Indices: 76561381--76561409 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
76561371 TTCACTTAAG
76561381 CACATACATACT
1 CACATACATACT
76561393 CACATACATACT
1 CACATACATACT
76561405 CACAT
1 CACAT
76561410 CCTTTCACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.41, C:0.34, G:0.00, T:0.24
Consensus pattern (12 bp):
CACATACATACT
Found at i:76566124 original size:28 final size:28
Alignment explanation
Indices: 76566079--76566138 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
76566069 AAGAAGAGAA
* *
76566079 AAAAAGAGGAATAAGAGAAG-AAATGGAG
1 AAAAAGAAGAAGAAGAGAAGAAAAT-GAG
*
76566107 AAAAAGAAGAAGAGGAGAAGAAAATGAG
1 AAAAAGAAGAAGAAGAGAAGAAAATGAG
76566135 AAAA
1 AAAA
76566139 TGGAAGGAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 24 0.86
29 4 0.14
ACGTcount: A:0.65, C:0.00, G:0.30, T:0.05
Consensus pattern (28 bp):
AAAAAGAAGAAGAAGAGAAGAAAATGAG
Found at i:76567274 original size:21 final size:21
Alignment explanation
Indices: 76567233--76567275 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
76567223 CAATGTGGCA
*
76567233 AGTTAACTAGCCACATTAGCT
1 AGTTAACTAGCCACATCAGCT
* *
76567254 AGTTAACTGGCCACGTCAGCT
1 AGTTAACTAGCCACATCAGCT
76567275 A
1 A
76567276 TCCCGTTAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (21 bp):
AGTTAACTAGCCACATCAGCT
Found at i:76567346 original size:31 final size:30
Alignment explanation
Indices: 76567309--76567377 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
76567299 ATGTTAATGG
76567309 GTGACTGATTTGTCACTTTTTAATAATGTT-A
1 GTGACTGATTTGTCACTTTTTAA-AA-GTTGA
* * * *
76567340 GTGACTGTTTTGTTATTTTTTCAAAGTTGA
1 GTGACTGATTTGTCACTTTTTAAAAGTTGA
76567370 GTGACTGA
1 GTGACTGA
76567378 AATGAAACCC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
29 3 0.09
30 10 0.31
31 19 0.59
ACGTcount: A:0.23, C:0.09, G:0.20, T:0.48
Consensus pattern (30 bp):
GTGACTGATTTGTCACTTTTTAAAAGTTGA
Found at i:76569161 original size:50 final size:48
Alignment explanation
Indices: 76569102--76569317 Score: 184
Period size: 47 Copynumber: 4.6 Consensus size: 48
76569092 AGGCCGACGC
*
76569102 CATGTCCCAGACATGGTCTTACACTATCTCTCACATATCCGT-GCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATAT--GTAGCCGATG
* *
76569151 CTATGTCCCAGACATGGTCTTACACT-G---ACACATCTTGTAGCCGATG
1 C-ATGTCCCAGACATGGTCTTACACTAGCTCTCACAT-ATGTAGCCGATG
* * *
76569197 CATGTCCCAGACAT-GTCTTACACTGGCTCTCGTC-TCA-ATA-CCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTC-ACAT-ATGTAGCCGATG
* * * * *
76569243 CCATGTCCCAGACATGATTTTACACTGGCTCTCATA-ATGTGGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATGTAGCCGATG
*
76569291 CATGCCCCAGACAT-GTCTTACACTAGC
1 CATGTCCCAGACATGGTCTTACACTAGC
76569318 ACACAAATAA
Statistics
Matches: 137, Mismatches: 17, Indels: 29
0.75 0.09 0.16
Matches are distributed among these distances:
44 10 0.07
45 16 0.12
46 30 0.22
47 31 0.23
48 24 0.18
49 2 0.01
50 24 0.18
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATGTAGCCGATG
Found at i:76569266 original size:92 final size:93
Alignment explanation
Indices: 76569145--76569314 Score: 245
Period size: 92 Copynumber: 1.8 Consensus size: 93
76569135 CATATCCGTG
* * *
76569145 CCGATGCTATGTCCCAGACATGGTCTTACACTGACACATC-T-TGTAGCCGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGATCTTACACTGACAC-TCATATGTAGCCGATGCATGCCCCAGA
76569208 CATGTCTTACACTGGCTCTCGTCTCAATA
65 CATGTCTTACACTGGCTCTCGTCTCAATA
* * * *
76569237 CCGATGCCATGTCCCAGACATGATTTTACACTGGCTCTCATAATGTGGCCGATGCATGCCCCAGA
1 CCGATGCCATGTCCCAGACATGATCTTACACTGACACTCAT-ATGTAGCCGATGCATGCCCCAGA
76569302 CATGTCTTACACT
65 CATGTCTTACACT
76569315 AGCACACAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
91 2 0.03
92 33 0.49
94 33 0.49
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (93 bp):
CCGATGCCATGTCCCAGACATGATCTTACACTGACACTCATATGTAGCCGATGCATGCCCCAGAC
ATGTCTTACACTGGCTCTCGTCTCAATA
Found at i:76569300 original size:47 final size:45
Alignment explanation
Indices: 76568997--76569314 Score: 155
Period size: 46 Copynumber: 6.7 Consensus size: 45
76568987 ATAGCGTATG
* *
76568997 ATGCCAATGCCATGTCCCAGACATGGTTTTACACTGGCTCGTTC-ATCA
1 ATGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTC--TCGATCA
** * * * * **
76569045 A-GTTGATGCCACGT-CCAGATATGGTCTTACACTGACTATCGAAATTG
1 ATGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCG--ATCA
* * ** * *
76569092 AGGCCGACGCCATGTCCCAGACATGGTCTTACACTATCTCTCACATATCC
1 ATGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCT--C-GATCA
* * * * **
76569142 GTGCCGATGCTATGTCCCAGACATGGTCTTACACTGACACATC-TTGT
1 ATGCCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCTC-TCGATCA
*
76569189 A-GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCA
1 ATGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCG-ATCA
* *
76569234 ATACCGATGCCATGTCCCAGACATGATTTTACACTGGCTCTC-AT-A
1 ATGCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTCTCGATCA
*
76569279 ATGTGGCCGATGCATGCCCCAGACATGTCTTACACT
1 A--T-GCCGATGCATGTCCCAGACATGTCTTACACT
76569315 AGCACACAAA
Statistics
Matches: 210, Mismatches: 42, Indels: 38
0.72 0.14 0.13
Matches are distributed among these distances:
43 2 0.01
44 15 0.07
45 17 0.08
46 43 0.20
47 43 0.20
48 31 0.15
49 23 0.11
50 34 0.16
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
ATGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGATCA
Found at i:76576042 original size:44 final size:44
Alignment explanation
Indices: 76575898--76576066 Score: 143
Period size: 43 Copynumber: 3.9 Consensus size: 44
76575888 AACATATACA
* * *
76575898 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCA-AACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAAACATAA-ATCG
* * *
76575941 ATGCC-ACTGTCCCAGACAAT-GTCTTACACG-AAATCAGATA-CG
1 ATGCCAAC-GTCCCAGAC-ATGGTCTTACACGTAAAACATAAATCG
* * *
76575983 ATGCCGATGTCCTAGACATGGTCTTACACGTAAAACATAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAAACATAAATCG
* ** *
76576027 ATGCCAACGTCCTAGATGTGGTCTTACACGGAAACACATA
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAA-ACATA
76576067 TCGGATCCTA
Statistics
Matches: 104, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
41 2 0.02
42 27 0.26
43 37 0.36
44 33 0.32
45 5 0.05
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAAACATAAATCG
Found at i:76578519 original size:16 final size:15
Alignment explanation
Indices: 76578493--76578524 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
76578483 AATAATTTAC
76578493 ACTAGCACAAAGCCT
1 ACTAGCACAAAGCCT
76578508 ACTAGACACAAAGCCT
1 ACTAG-CACAAAGCCT
76578524 A
1 A
76578525 ATAATATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.44, C:0.31, G:0.12, T:0.12
Consensus pattern (15 bp):
ACTAGCACAAAGCCT
Found at i:76578590 original size:41 final size:41
Alignment explanation
Indices: 76578480--76578593 Score: 147
Period size: 41 Copynumber: 2.8 Consensus size: 41
76578470 AGGCTCAATG
* * * *
76578480 CCTAATAATTTACACTAGCACAAAGCCTACTAGACACAAAG
1 CCTAATAATATACACTGGCACAAAGCCTGCTAGACACAAAA
* * *
76578521 CCTAATAATATACACCGACACAAAGCCTGCTAGGCACAAAA
1 CCTAATAATATACACTGGCACAAAGCCTGCTAGACACAAAA
* *
76578562 CTTGATAATATACACTGGCACAAAGCCTGCTA
1 CCTAATAATATACACTGGCACAAAGCCTGCTA
76578594 ATATTTTCTT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.41, C:0.27, G:0.12, T:0.19
Consensus pattern (41 bp):
CCTAATAATATACACTGGCACAAAGCCTGCTAGACACAAAA
Found at i:76581733 original size:20 final size:20
Alignment explanation
Indices: 76581710--76581747 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
76581700 ATTTAGTCAT
*
76581710 TTTTATTTTTATTTTAATAC
1 TTTTATTTTTAATTTAATAC
76581730 TTTTATTTTTAATTTAAT
1 TTTTATTTTTAATTTAAT
76581748 TTTCTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTATTTTTAATTTAATAC
Found at i:76584999 original size:20 final size:18
Alignment explanation
Indices: 76584959--76585000 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
76584949 ACCCTAATTT
*
76584959 TCCC-TTTTCTTTTTCTT
1 TCCCTTTTTCTTTTTCTC
76584976 TCCCTTTTTCCTTCTTTCTC
1 TCCCTTTTT-CTT-TTTCTC
76584996 TCCCT
1 TCCCT
76585001 GCTAATCGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 4 0.19
19 3 0.14
20 10 0.48
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (18 bp):
TCCCTTTTTCTTTTTCTC
Found at i:76588916 original size:46 final size:44
Alignment explanation
Indices: 76588864--76588949 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
76588854 AGAACAGAAA
*
76588864 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAGACAGGAT
*
76588910 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACA
1 TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACA
76588950 AGAATAATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 17 0.45
46 21 0.55
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (44 bp):
TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACAGGAT
Found at i:76588963 original size:44 final size:45
Alignment explanation
Indices: 76588866--76588990 Score: 135
Period size: 44 Copynumber: 2.8 Consensus size: 45
76588856 AACAGAAATG
* * * *
76588866 AGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTG
1 AGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAAGAATA
*
76588912 AGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAAGAATA
1 AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATA
** * * *
76588956 ATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
76588991 CAGGATATTG
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 35 0.53
45 1 0.02
46 30 0.45
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (45 bp):
AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATA
Found at i:76597539 original size:22 final size:23
Alignment explanation
Indices: 76597514--76597556 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
76597504 TATCCCCACA
*
76597514 TGGAGTGTAG-GGCTGGATGGAG
1 TGGAGTGTAGAGGATGGATGGAG
76597536 TGGAGTGTAGAGGATGGATGG
1 TGGAGTGTAGAGGATGGATGG
76597557 GTAGGATCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.02, G:0.53, T:0.23
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGATGGAG
Found at i:76597634 original size:34 final size:34
Alignment explanation
Indices: 76597595--76597675 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
76597585 TGTACTAAAT
76597595 TGGGCTAAGGCCCACACTAATACTGCTACTG-TAA
1 TGGGCTAAGGCCCACACTAATACTGCTACTGAT-A
* * *
76597629 TGGGCTAAGGCCTACACTGATATTGCTACTGATA
1 TGGGCTAAGGCCCACACTAATACTGCTACTGATA
*
76597663 TGGGCTTAGGCCC
1 TGGGCTAAGGCCC
76597676 TGACTGTACG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
34 40 0.98
35 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (34 bp):
TGGGCTAAGGCCCACACTAATACTGCTACTGATA
Found at i:76599107 original size:42 final size:42
Alignment explanation
Indices: 76599047--76599228 Score: 157
Period size: 42 Copynumber: 4.2 Consensus size: 42
76599037 GTCCCAAACG
** * **
76599047 TGGTCTTACATGGGATCTCACATCGATGCCATATATCAGATA
1 TGGTCTTACATGAAATCTCATATCGATGCCATATCCCAGATA
* * * * *
76599089 TGGTCTTATATGAAATCTCATTTCGATGACATGTCCCAGACA
1 TGGTCTTACATGAAATCTCATATCGATGCCATATCCCAGATA
* * * * *
76599131 TGGTTTTACATGAAATCTCATAACAATGTCATATCCCAAATA
1 TGGTCTTACATGAAATCTCATATCGATGCCATATCCCAGATA
* *
76599173 TGGTCTTACATGATAATACATACAGATGCCGATGCCATATCCTAGATA
1 TGGTCTTACATGA-AAT-C-T-CATAT--CGATGCCATATCCCAGATA
76599221 TGGTCTTA
1 TGGTCTTA
76599229 TACGGGATCT
Statistics
Matches: 108, Mismatches: 26, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
42 77 0.71
43 3 0.03
44 1 0.01
45 1 0.01
46 3 0.03
48 23 0.21
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32
Consensus pattern (42 bp):
TGGTCTTACATGAAATCTCATATCGATGCCATATCCCAGATA
Found at i:76607358 original size:45 final size:45
Alignment explanation
Indices: 76607294--76607450 Score: 165
Period size: 45 Copynumber: 3.5 Consensus size: 45
76607284 TGCCTTGGTG
76607294 TCTTTCAACCATGGTCTTATTTATTCTCATCT-TGATGCCATAATA
1 TCTTTCAACCATGGTCTTATTTATTCTCAT-TGTGATGCCATAATA
* * * * *
76607339 TCTTTCAACCATGGTCTTATTCATTTCCCATTGTGTTGCCATAGTT
1 TCTTTCAACCATGGTCTTATTTA-TTCTCATTGTGATGCCATAATA
* * * **
76607385 TCTTTCAACTATGGTCTTATTTCTT-TGATTTGTGATGCCATAACG
1 TCTTTCAACCATGGTCTTATTTATTCTCA-TTGTGATGCCATAATA
* *
76607430 TCTTTCAGCTATGGTCTTATT
1 TCTTTCAACCATGGTCTTATT
76607451 CGATAGAATC
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
44 1 0.01
45 57 0.61
46 36 0.38
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (45 bp):
TCTTTCAACCATGGTCTTATTTATTCTCATTGTGATGCCATAATA
Found at i:76607399 original size:46 final size:45
Alignment explanation
Indices: 76607294--76607405 Score: 145
Period size: 46 Copynumber: 2.5 Consensus size: 45
76607284 TGCCTTGGTG
* *
76607294 TCTTTCAACCATGGTCTTATTTATTCTCATCTTGATGCCATAATA
1 TCTTTCAACCATGGTCTTATTCATTCCCATCTTGATGCCATAATA
* * *
76607339 TCTTTCAACCATGGTCTTATTCATTTCCCAT-TGTGTTGCCATAGTT
1 TCTTTCAACCATGGTCTTATTCA-TTCCCATCT-TGATGCCATAATA
*
76607385 TCTTTCAACTATGGTCTTATT
1 TCTTTCAACCATGGTCTTATT
76607406 TCTTTGATTT
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
45 23 0.39
46 36 0.61
ACGTcount: A:0.21, C:0.22, G:0.11, T:0.46
Consensus pattern (45 bp):
TCTTTCAACCATGGTCTTATTCATTCCCATCTTGATGCCATAATA
Found at i:76607465 original size:45 final size:45
Alignment explanation
Indices: 76607416--76607587 Score: 272
Period size: 45 Copynumber: 3.8 Consensus size: 45
76607406 TCTTTGATTT
*
76607416 GTGATGCCATAACGTCTTTCAGCTATGGTCTTATTCGATAGAATC
1 GTGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATC
* *
76607461 GTGATGCCATAACATCTTTTAGCTATGGTCTTACTCGATAGAATC
1 GTGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATC
* * *
76607506 GTGATGCCATAACTTCTTTTAGCTGTGGTCTTACTCGATAGAATC
1 GTGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATC
* *
76607551 ATGATGCCATAATGTCTTTCAGCTATGGTCTTACTCG
1 GTGATGCCATAACGTCTTTCAGCTATGGTCTTACTCG
76607588 TTTAGTTTAT
Statistics
Matches: 117, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 117 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (45 bp):
GTGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGATAGAATC
Found at i:76607604 original size:90 final size:91
Alignment explanation
Indices: 76607375--76607624 Score: 274
Period size: 90 Copynumber: 2.8 Consensus size: 91
76607365 CCCATTGTGT
* * * *
76607375 TGCCATAGTTTCTTTCAACTATGGTCTTATTTC-TTT-GATTTGTGATGCCATAACGTCTTTCAG
1 TGCCATAATATCTTTCAGCTATGGTCTTA-CTCGTTTAGATTTGTGATGCCATAACGTCTTTCAG
* *
76607438 CTATGGTCTTATTCGATAGAATCGTGA
65 CTATGGTCTTACTCGATAGAATCATGA
* * * * * * *
76607465 TGCCATAACATCTTTTAGCTATGGTCTTACTCG-ATAGAATCGTGATGCCATAACTTCTTTTAGC
1 TGCCATAATATCTTTCAGCTATGGTCTTACTCGTTTAGATTTGTGATGCCATAACGTCTTTCAGC
*
76607529 TGTGGTCTTACTCGATAGAATCATGA
66 TATGGTCTTACTCGATAGAATCATGA
* * * *** *
76607555 TGCCATAATGTCTTTCAGCTATGGTCTTACTCGTTTAG-TTTATGGTGCCATAGTTTCTTTCAAC
1 TGCCATAATATCTTTCAGCTATGGTCTTACTCGTTTAGATTTGTGATGCCATAACGTCTTTCAGC
76607619 TATGGT
66 TATGGT
76607625 ATTATTTATT
Statistics
Matches: 130, Mismatches: 27, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
89 3 0.02
90 124 0.95
91 3 0.02
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (91 bp):
TGCCATAATATCTTTCAGCTATGGTCTTACTCGTTTAGATTTGTGATGCCATAACGTCTTTCAGC
TATGGTCTTACTCGATAGAATCATGA
Found at i:76607681 original size:45 final size:46
Alignment explanation
Indices: 76607555--76607681 Score: 123
Period size: 45 Copynumber: 2.8 Consensus size: 46
76607545 AGAATCATGA
* * * * * *
76607555 TGCCATAATGTCTTTCAGCTATGGTCTTACTCGTTT-AGTTTATGG
1 TGCCATAATATCTTTCAACTATGGTCTTAATCATTTCAGTGTATAG
* * * * * *
76607600 TGCCATAGTTTCTTTCAACTATGGTATTATTTATTTCTG-GTATAG
1 TGCCATAATATCTTTCAACTATGGTCTTAATCATTTCAGTGTATAG
*
76607645 TGCCATAATATCTTTCAACTGTGGTCTTAATCATTTC
1 TGCCATAATATCTTTCAACTATGGTCTTAATCATTTC
76607682 CTTGAAGCCA
Statistics
Matches: 65, Mismatches: 16, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
45 64 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.16, T:0.46
Consensus pattern (46 bp):
TGCCATAATATCTTTCAACTATGGTCTTAATCATTTCAGTGTATAG
Found at i:76608525 original size:15 final size:17
Alignment explanation
Indices: 76608488--76608523 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
76608478 TTTAAGAACC
*
76608488 AAAATGAATATATATAA
1 AAAATAAATATATATAA
76608505 AAAATAAAT-TATATAA
1 AAAATAAATATATATAA
76608521 AAA
1 AAA
76608524 TACGATGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (17 bp):
AAAATAAATATATATAA
Found at i:76615943 original size:39 final size:40
Alignment explanation
Indices: 76615899--76615985 Score: 133
Period size: 39 Copynumber: 2.2 Consensus size: 40
76615889 GACTTAATGT
* *
76615899 CTAGCAGGCCTT-GTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTTCGTGCCGATAATAAATTCAGGTTTATAC
*
76615938 CTAGCAGG-CTTCGTGCCGATAATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTTCGTGCCGATAATAAATTCAGGTTTATAC
76615977 CTAGCAGGC
1 CTAGCAGGC
76615986 TAATTGCCGG
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
38 3 0.07
39 40 0.93
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (40 bp):
CTAGCAGGCCTTCGTGCCGATAATAAATTCAGGTTTATAC
Found at i:76615994 original size:39 final size:39
Alignment explanation
Indices: 76615911--76615994 Score: 114
Period size: 39 Copynumber: 2.2 Consensus size: 39
76615901 AGCAGGCCTT
* * **
76615911 GTGCCGGTGATAAATTCAGGTTTATACCTAGCAGGCTTC
1 GTGCCGATAATAAATTCAGGTTTATACCTAGCAGGCTAA
*
76615950 GTGCCGATAATAAGTTCAGGTTTATACCTAGCAGGCTAA
1 GTGCCGATAATAAATTCAGGTTTATACCTAGCAGGCTAA
*
76615989 TTGCCG
1 GTGCCG
76615995 GTGAAATAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (39 bp):
GTGCCGATAATAAATTCAGGTTTATACCTAGCAGGCTAA
Found at i:76630108 original size:15 final size:15
Alignment explanation
Indices: 76630076--76630104 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
76630066 ATTTTTTATG
76630076 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
76630091 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
76630105 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:76630357 original size:23 final size:21
Alignment explanation
Indices: 76630305--76630359 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 21
76630295 ATTCATATTA
76630305 TATAATAAAGGTTAAATATGT
1 TATAATAAAGGTTAAATATGT
* *
76630326 AATTAAATAATATGTTAATATATGT
1 TA-T-AATAA-AGGTTAA-ATATGT
76630351 TATAATAAA
1 TATAATAAA
76630360 ACATTAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
21 1 0.04
22 2 0.07
23 10 0.37
24 7 0.26
25 7 0.26
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (21 bp):
TATAATAAAGGTTAAATATGT
Found at i:76630651 original size:15 final size:15
Alignment explanation
Indices: 76630631--76630661 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
76630621 AAATATGAAA
76630631 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
76630646 GATATGTTTTGTATT
1 GATATGTTTTGGATT
76630661 G
1 G
76630662 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:76631327 original size:45 final size:45
Alignment explanation
Indices: 76631242--76631327 Score: 100
Period size: 45 Copynumber: 1.9 Consensus size: 45
76631232 AGGATCCAAT
* * * * *
76631242 ATGTGTTTTCGTGTAAGACCAAATCTGGGACGTTGACATCGATGC
1 ATGTGGTTACGTGTAAGACCAAATCTGGAACATCGACATCGATGC
** *
76631287 ATGTGGTTACGTGTAAGACCATGTCTGGAACATCGGCATCG
1 ATGTGGTTACGTGTAAGACCAAATCTGGAACATCGACATCG
76631328 TATTTGATTC
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 33 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (45 bp):
ATGTGGTTACGTGTAAGACCAAATCTGGAACATCGACATCGATGC
Found at i:76635601 original size:39 final size:40
Alignment explanation
Indices: 76635568--76635643 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 40
76635558 CGACTACTGG
*
76635568 TGGCACTTAGTGTGCGA-ATGACATAGCTTCGACTATATA
1 TGGCACTTAGTGTGCGATATGACATAGCTTCGACTATAGA
* * *
76635607 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTAT
1 TGGCACTTAGTGTGCGATATGACATAGCTTCGACTAT
76635644 GCACAGTACT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
39 17 0.52
40 16 0.48
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATATGACATAGCTTCGACTATAGA
Found at i:76643120 original size:40 final size:40
Alignment explanation
Indices: 76643032--76643123 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
76643022 ACTATTGGTA
* * *
76643032 GCACTAAGTGTGCGAATCGACATAGCTTCGGCTATATATG
1 GCACTTAGTGTGCGAATCGACATAGCTTCGACTATATACG
* * * *
76643072 GCACTTAGTGTGCGATTTGAGATAGCTTCGACTATGTACG
1 GCACTTAGTGTGCGAATCGACATAGCTTCGACTATATACG
*
76643112 GCATTTAGTGTG
1 GCACTTAGTGTG
76643124 TGAGATATCG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (40 bp):
GCACTTAGTGTGCGAATCGACATAGCTTCGACTATATACG
Done.