Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: At_chr3 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 100348136 ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31 Warning! 3062571 characters in sequence are not A, C, G, or T File 222 of 290 Found at i:76643156 original size:28 final size:28 Alignment explanation
Indices: 76643111--76643222 Score: 120 Period size: 28 Copynumber: 4.0 Consensus size: 28 76643101 GACTATGTAC * * 76643111 GGCATTTAGTGTGTGAGATATCGAGTAT 1 GGCACTTAGTGTATGAGATATCGAGTAT * ** 76643139 GACACTTAGTGTATGAGATAGT-GAAAAT 1 GGCACTTAGTGTATGAGATA-TCGAGTAT 76643167 GGCACTTAGTGTGA-GAGATATCGAGTAT 1 GGCACTTAGTGT-ATGAGATATCGAGTAT ** * 76643195 GGCACTTAGTGTGCGAGATATTGAGTAT 1 GGCACTTAGTGTATGAGATATCGAGTAT 76643223 TCAACTGCAT Statistics Matches: 70, Mismatches: 10, Indels: 8 0.80 0.11 0.09 Matches are distributed among these distances: 27 1 0.01 28 67 0.96 29 2 0.03 ACGTcount: A:0.29, C:0.09, G:0.30, T:0.31 Consensus pattern (28 bp): GGCACTTAGTGTATGAGATATCGAGTAT Found at i:76647171 original size:28 final size:28 Alignment explanation
Indices: 76647122--76647205 Score: 105 Period size: 28 Copynumber: 3.0 Consensus size: 28 76647112 ATGTCCTAAA * 76647122 ATTACATAAATAGCTACTTTTCAGATAAC 1 ATTACAT-AATAGCTACTTTTCAGAGAAC * * * 76647151 ATTACATAATTGCTATTTTTCATAGAAC 1 ATTACATAATAGCTACTTTTCAGAGAAC * * 76647179 ATTACATAATAGTTACTTATCAGAGAA 1 ATTACATAATAGCTACTTTTCAGAGAA 76647206 TATATTCTCT Statistics Matches: 46, Mismatches: 9, Indels: 1 0.82 0.16 0.02 Matches are distributed among these distances: 28 39 0.85 29 7 0.15 ACGTcount: A:0.40, C:0.14, G:0.08, T:0.37 Consensus pattern (28 bp): ATTACATAATAGCTACTTTTCAGAGAAC Found at i:76647278 original size:23 final size:23 Alignment explanation
Indices: 76647247--76647312 Score: 89 Period size: 23 Copynumber: 2.9 Consensus size: 23 76647237 AACTTTTTTT * 76647247 TAGAGAATATTCACTGTTCATGGC 1 TAGAGAATATTTACTGTTCAT-GC * 76647271 -AGAGAATATTTAATGTTCATGC 1 TAGAGAATATTTACTGTTCATGC * 76647293 TAGAGAATATTTACTATTCA 1 TAGAGAATATTTACTGTTCA 76647313 CATCAAAGAA Statistics Matches: 37, Mismatches: 4, Indels: 3 0.84 0.09 0.07 Matches are distributed among these distances: 22 2 0.05 23 35 0.95 ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36 Consensus pattern (23 bp): TAGAGAATATTTACTGTTCATGC Found at i:76647588 original size:13 final size:13 Alignment explanation
Indices: 76647570--76647599 Score: 51 Period size: 13 Copynumber: 2.3 Consensus size: 13 76647560 AAACTAGATT * 76647570 TTAACTAAGTAAA 1 TTAACTAAGAAAA 76647583 TTAACTAAGAAAA 1 TTAACTAAGAAAA 76647596 TTAA 1 TTAA 76647600 AAGATAAAAA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 13 16 1.00 ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30 Consensus pattern (13 bp): TTAACTAAGAAAA Found at i:76651323 original size:18 final size:18 Alignment explanation
Indices: 76651294--76651340 Score: 58 Period size: 18 Copynumber: 2.6 Consensus size: 18 76651284 TAGTGTAGAA * * 76651294 CAGTAAATAGTGCAGTAC 1 CAGTAAACAGTGCAATAC * * 76651312 CAGTATACAGTGCAATAT 1 CAGTAAACAGTGCAATAC 76651330 CAGTAAACAGT 1 CAGTAAACAGT 76651341 ATGCAAGTCC Statistics Matches: 24, Mismatches: 5, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 18 24 1.00 ACGTcount: A:0.40, C:0.17, G:0.19, T:0.23 Consensus pattern (18 bp): CAGTAAACAGTGCAATAC Found at i:76651486 original size:21 final size:21 Alignment explanation
Indices: 76651462--76651532 Score: 56 Period size: 22 Copynumber: 3.2 Consensus size: 21 76651452 CGGCACTAAA 76651462 CAGTATTTGCAGCAGAGCTAC 1 CAGTATTTGCAGCAGAGCTAC * * * 76651483 CAGTATAAT--AGGCTTAGAGCCAT 1 CAGTAT-TTGCA-GC--AGAGCTAC 76651506 CAGTGATTTGCAGCAGAGCTAC 1 CAGT-ATTTGCAGCAGAGCTAC 76651528 CAGTA 1 CAGTA 76651533 CAGTACACTT Statistics Matches: 37, Mismatches: 6, Indels: 14 0.65 0.11 0.25 Matches are distributed among these distances: 20 1 0.03 21 9 0.24 22 11 0.30 23 11 0.30 24 4 0.11 25 1 0.03 ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24 Consensus pattern (21 bp): CAGTATTTGCAGCAGAGCTAC Found at i:76651770 original size:27 final size:27 Alignment explanation
Indices: 76651660--76651771 Score: 79 Period size: 27 Copynumber: 4.1 Consensus size: 27 76651650 TATAAACATA * * 76651660 TATCACAT-AGGGACAAAATAGTCATTT 1 TATCTCATAAGGG-CAAAATACTCATTT * * * 76651687 TACCTTATAA-TGCAAAA-ACAATCATTT 1 TATCTCATAAGGGCAAAATAC--TCATTT * * * * 76651714 TACCTCAGAAAGGCAAAACT-GTCATTT 1 TATCTCATAAGGGCAAAA-TACTCATTT 76651741 TATCTCATAAGGGCAAAATACTCATTT 1 TATCTCATAAGGGCAAAATACTCATTT 76651768 TATC 1 TATC 76651772 AATTTGAGGG Statistics Matches: 65, Mismatches: 13, Indels: 14 0.71 0.14 0.15 Matches are distributed among these distances: 25 1 0.02 26 6 0.09 27 51 0.78 28 7 0.11 ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31 Consensus pattern (27 bp): TATCTCATAAGGGCAAAATACTCATTT Found at i:76656782 original size:16 final size:16 Alignment explanation
Indices: 76656761--76656793 Score: 57 Period size: 16 Copynumber: 2.1 Consensus size: 16 76656751 AAAAAATAAA 76656761 AATCCTAACAGAACCT 1 AATCCTAACAGAACCT * 76656777 AATCCTAACATAACCT 1 AATCCTAACAGAACCT 76656793 A 1 A 76656794 GGAAAGAAAA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 16 16 1.00 ACGTcount: A:0.45, C:0.30, G:0.03, T:0.21 Consensus pattern (16 bp): AATCCTAACAGAACCT Found at i:76658434 original size:17 final size:17 Alignment explanation
Indices: 76658412--76658446 Score: 52 Period size: 17 Copynumber: 2.1 Consensus size: 17 76658402 CAAGCAAGGT 76658412 GCGAGCAGGGATGGTGC 1 GCGAGCAGGGATGGTGC * * 76658429 GCGAGCTGGTATGGTGC 1 GCGAGCAGGGATGGTGC 76658446 G 1 G 76658447 TGCAGGGGCA Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 17 16 1.00 ACGTcount: A:0.14, C:0.17, G:0.51, T:0.17 Consensus pattern (17 bp): GCGAGCAGGGATGGTGC Found at i:76658943 original size:16 final size:15 Alignment explanation
Indices: 76658917--76658955 Score: 60 Period size: 16 Copynumber: 2.5 Consensus size: 15 76658907 TATATAAAGT * 76658917 TAATAATAATAAATA 1 TAATTATAATAAATA 76658932 TACATTATAATAAATA 1 TA-ATTATAATAAATA 76658948 TAATTATA 1 TAATTATA 76658956 TATTAATTAT Statistics Matches: 22, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 15 8 0.36 16 14 0.64 ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38 Consensus pattern (15 bp): TAATTATAATAAATA Found at i:76676961 original size:96 final size:96 Alignment explanation
Indices: 76676790--76676976 Score: 252 Period size: 96 Copynumber: 1.9 Consensus size: 96 76676780 TCGCTTCTTT * 76676790 TTGCTCCTCTTAGCCCTCTTGGTGTCAGCTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT 1 TTGCTCCTCTTAGCCCTCTTGGTGTCAGCTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCCAT * * * * 76676855 GTCTGCTCCATCGTTCCCTTCGATGATACAC 66 ATCTACTCCATCATTCCCATCGATGATACAC * * * * 76676886 TTGCTCCTCTTTGCCTTCTTGGCT-TC-GACTTTTTCCTTGCTCGAACCAAGCTTCTTGGGCTTC 1 TTGCTCCTCTTAGCCCTCTTGG-TGTCAG-CTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCC * 76676949 ATATCTATTCCATCATTCCCATCGATGA 64 ATATCTACTCCATCATTCCCATCGATGA 76676977 CAGACTTCTT Statistics Matches: 79, Mismatches: 10, Indels: 4 0.85 0.11 0.04 Matches are distributed among these distances: 95 1 0.01 96 77 0.97 97 1 0.01 ACGTcount: A:0.13, C:0.33, G:0.16, T:0.39 Consensus pattern (96 bp): TTGCTCCTCTTAGCCCTCTTGGTGTCAGCTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCCAT ATCTACTCCATCATTCCCATCGATGATACAC Found at i:76679570 original size:10 final size:10 Alignment explanation
Indices: 76679555--76679615 Score: 61 Period size: 10 Copynumber: 5.9 Consensus size: 10 76679545 ATATTGTTAT 76679555 ACATGATATG 1 ACATGATATG 76679565 ACATGATATG 1 ACATGATATG 76679575 CACATGATATG 1 -ACATGATATG ** * 76679586 TTATGAGATG 1 ACATGATATG 76679596 CACATGATATG 1 -ACATGATATG 76679607 -CTATGATAT 1 AC-ATGATAT 76679616 ACTCATTATA Statistics Matches: 42, Mismatches: 6, Indels: 6 0.78 0.11 0.11 Matches are distributed among these distances: 9 1 0.02 10 24 0.57 11 17 0.40 ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33 Consensus pattern (10 bp): ACATGATATG Found at i:76679580 original size:21 final size:20 Alignment explanation
Indices: 76679555--76679631 Score: 82 Period size: 21 Copynumber: 3.7 Consensus size: 20 76679545 ATATTGTTAT 76679555 ACATGATATGACATGATATGC 1 ACATGATATG-CATGATATGC * * 76679576 ACATGATATGTTATGAGATGC 1 ACATGATATG-CATGATATGC * 76679597 ACATGATATGCTATGATATAC 1 ACATGATATGC-ATGATATGC * * 76679618 TCATTATATGCATG 1 ACATGATATGCATG 76679632 GGTTGGGTTT Statistics Matches: 47, Mismatches: 8, Indels: 3 0.81 0.14 0.05 Matches are distributed among these distances: 20 3 0.06 21 44 0.94 ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34 Consensus pattern (20 bp): ACATGATATGCATGATATGC Found at i:76687501 original size:21 final size:21 Alignment explanation
Indices: 76687445--76687502 Score: 73 Period size: 21 Copynumber: 2.8 Consensus size: 21 76687435 ATATTGTTAT 76687445 ACATGATATGAC-ATGAAATGC 1 ACATGATATG-CTATGAAATGC * * * 76687466 ATATGATATGTTATGAGATGC 1 ACATGATATGCTATGAAATGC 76687487 ACATGATATGCTATGA 1 ACATGATATGCTATGA 76687503 TATACTCATT Statistics Matches: 31, Mismatches: 5, Indels: 2 0.82 0.13 0.05 Matches are distributed among these distances: 21 31 1.00 ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31 Consensus pattern (21 bp): ACATGATATGCTATGAAATGC Found at i:76687610 original size:24 final size:24 Alignment explanation
Indices: 76687553--76687624 Score: 67 Period size: 25 Copynumber: 3.0 Consensus size: 24 76687543 AGAAAGTGCG * 76687553 AAAAG-GGCTTTGCCCCAGTTTACC 1 AAAAGAGGCTTTGCCCCAG-TTATC * 76687577 AAAA-AGGGCTTTGCCCCAGTTATT 1 AAAAGA-GGCTTTGCCCCAGTTATC ** 76687601 AAAAGAGGCTAGGCCTCCAGTTAT 1 AAAAGAGGCTTTGCC-CCAGTTAT 76687625 ATGATAAAGC Statistics Matches: 40, Mismatches: 4, Indels: 7 0.78 0.08 0.14 Matches are distributed among these distances: 24 18 0.45 25 22 0.55 ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25 Consensus pattern (24 bp): AAAAGAGGCTTTGCCCCAGTTATC Found at i:76691528 original size:50 final size:49 Alignment explanation
Indices: 76691395--76691574 Score: 174 Period size: 50 Copynumber: 3.7 Consensus size: 49 76691385 CTTGATATTT ** 76691395 GTCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACGGAA-A-AAGGAGA 1 GTCAGTGTAAGACCATGTCTAGGACATGGCATC-GC-CTCAATATAA-GAGA * * * * 76691445 GCCAGTGTAAGACCATGTTTGGGATATGGCATCGGCCTCAATATAAGAGA 1 GTCAGTGTAAGACCATGTCTAGGACATGGCATC-GCCTCAATATAAGAGA * * * * 76691495 GTCAGTGTAAGACCATGTATGGGACATGGCATCGACTCAATAT--GTG- 1 GTCAGTGTAAGACCATGTCTAGGACATGGCATCGCCTCAATATAAGAGA 76691541 GTTACA-TGTAAGACCATGTCTAGGACATGGCATC 1 G-T-CAGTGTAAGACCATGTCTAGGACATGGCATC 76691575 AACTAAATAT Statistics Matches: 112, Mismatches: 14, Indels: 11 0.82 0.10 0.08 Matches are distributed among these distances: 46 1 0.01 47 29 0.26 48 2 0.02 49 12 0.11 50 66 0.59 51 2 0.02 ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23 Consensus pattern (49 bp): GTCAGTGTAAGACCATGTCTAGGACATGGCATCGCCTCAATATAAGAGA Found at i:76691567 original size:47 final size:47 Alignment explanation
Indices: 76691500--76691621 Score: 190 Period size: 47 Copynumber: 2.6 Consensus size: 47 76691490 AGAGAGTCAG * * * * 76691500 TGTAAGACCATGTATGGGACATGGCATCGACTCAATATGTGGTTACA 1 TGTAAGACCATGTCTAGGACATGGCATCAACTAAATATGTGGTTACA 76691547 TGTAAGACCATGTCTAGGACATGGCATCAACTAAATATGTGGTTACA 1 TGTAAGACCATGTCTAGGACATGGCATCAACTAAATATGTGGTTACA * 76691594 TGTAAGACCATGTCTAGGATATTGGCAT 1 TGTAAGACCATGTCTAGGACA-TGGCAT 76691622 TGTATTGTGA Statistics Matches: 69, Mismatches: 5, Indels: 1 0.92 0.07 0.01 Matches are distributed among these distances: 47 63 0.91 48 6 0.09 ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29 Consensus pattern (47 bp): TGTAAGACCATGTCTAGGACATGGCATCAACTAAATATGTGGTTACA Found at i:76691620 original size:145 final size:144 Alignment explanation
Indices: 76691353--76691621 Score: 323 Period size: 145 Copynumber: 1.9 Consensus size: 144 76691343 CATGTGAGCT * * ** * 76691353 AGTGTAAGACCATGCCTGGGACATGGCATCGGCTTGATATTTGTCAGTGTAAGACCATGTCTAGG 1 AGTGTAAGACCATGCATGGGACATGGCATCGACTCAATATTGGTCAGTGTAAGACCATGTCTAGG * * * 76691418 ACATGGCATCAGCACGGAAAAAGGAGAGCCAGTGTAAGACCATGTTTGGGATATGGCATCGGCCT 66 ACATGGCATCA-CACGGAAAAAGGAGAGACAGTGTAAGACCATGTCTAGGATATGGCATCGGCCT 76691483 CAATATAAGAGAGTC 130 CAATATAAGAGAGTC * 76691498 AGTGTAAGACCATGTATGGGACATGGCATCGACTCAATATGTGGTTACA-TGTAAGACCATGTCT 1 AGTGTAAGACCATGCATGGGACATGGCATCGACTCAATAT-TGG-T-CAGTGTAAGACCATGTCT * * ** 76691562 AGGACATGGCATCA-AC-TAAATATGTG-GTTACA-TGTAAGACCATGTCTAGGATATTGGCAT 63 AGGACATGGCATCACACGGAAA-AAG-GAGAGACAGTGTAAGACCATGTCTAGGATA-TGGCAT 76691622 TGTATTGTGA Statistics Matches: 105, Mismatches: 13, Indels: 12 0.81 0.10 0.09 Matches are distributed among these distances: 144 22 0.21 145 48 0.46 146 3 0.03 147 30 0.29 148 2 0.02 ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25 Consensus pattern (144 bp): AGTGTAAGACCATGCATGGGACATGGCATCGACTCAATATTGGTCAGTGTAAGACCATGTCTAGG ACATGGCATCACACGGAAAAAGGAGAGACAGTGTAAGACCATGTCTAGGATATGGCATCGGCCTC AATATAAGAGAGTC Found at i:76697853 original size:50 final size:50 Alignment explanation
Indices: 76697788--76697921 Score: 182 Period size: 50 Copynumber: 2.7 Consensus size: 50 76697778 CTTGATATGT * * * 76697788 GTCAGTGTAAGACCATGTCTGGAACATGGCATCGGCAC-GGAAAGAGGAGA 1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAAAGAAGAGA * * * 76697838 G-CTAGTGTAAGACCATGTCTGGGATATGGCATCGGCCTCGATATAAGAGA 1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAAAGAAGAGA 76697888 GTCAGTGTAAGACCATGTCTGGGACATGGCATCG 1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCG 76697922 ACTCAATATG Statistics Matches: 74, Mismatches: 7, Indels: 6 0.85 0.08 0.07 Matches are distributed among these distances: 49 2 0.03 50 71 0.96 51 1 0.01 ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21 Consensus pattern (50 bp): GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAAAGAAGAGA Found at i:76697917 original size:100 final size:95 Alignment explanation
Indices: 76697741--76697921 Score: 254 Period size: 100 Copynumber: 1.9 Consensus size: 95 76697731 CAATACATGT * * * 76697741 GAGCTAGTGTAATACCATGTCTGAGACATGACATCGGCTTGATATGTGTCAGTGTAAGACCATGT 1 GAGCTAGTGTAAGACCATGTCTGAGACATGACATCGGCTCGATATGAGTCAGTGTAAGACCATGT 76697806 CTGGAACATGGCATCGGCACGGAAAGAGGA 66 CTGGAACATGGCATCGGCACGGAAAGAGGA * * * 76697836 GAGCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCCTCGATATAAGAGAGTCAGTGTAAGAC 1 GAGCTAGTGTAAGACCATGTCTGAGACATGACATCGG-CTCGATAT----GAGTCAGTGTAAGAC * 76697901 CATGTCTGGGACATGGCATCG 61 CATGTCTGGAACATGGCATCG 76697922 ACTCAATATG Statistics Matches: 74, Mismatches: 7, Indels: 5 0.86 0.08 0.06 Matches are distributed among these distances: 95 33 0.45 96 7 0.09 100 34 0.46 ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23 Consensus pattern (95 bp): GAGCTAGTGTAAGACCATGTCTGAGACATGACATCGGCTCGATATGAGTCAGTGTAAGACCATGT CTGGAACATGGCATCGGCACGGAAAGAGGA Found at i:76697961 original size:47 final size:50 Alignment explanation
Indices: 76697793--76697967 Score: 162 Period size: 50 Copynumber: 3.5 Consensus size: 50 76697783 TATGTGTCAG * * * * * * 76697793 TGTAAGACCATGTCTGGAACATGGCATCGGCAC-GGAAAGAGGAGAGCT-AG 1 TGTAAGACCATGTCTGGGACATGGCATCGG-ACTCGATATAAGAGAG-TAAA * * * * 76697843 TGTAAGACCATGTCTGGGATATGGCATCGGCCTCGATATAAGAGAGTCAG 1 TGTAAGACCATGTCTGGGACATGGCATCGGACTCGATATAAGAGAGTAAA * * * 76697893 TGTAAGACCATGTCTGGGACATGGCATC-GACTC-A-ATATGTGATTAAA 1 TGTAAGACCATGTCTGGGACATGGCATCGGACTCGATATAAGAGAGTAAA * 76697940 TGTAAGACCATGTCTAGGACATTGGCAT 1 TGTAAGACCATGTCTGGGACA-TGGCAT 76697968 TGTATTGTGA Statistics Matches: 107, Mismatches: 15, Indels: 8 0.82 0.12 0.06 Matches are distributed among these distances: 47 28 0.26 48 7 0.07 49 6 0.06 50 66 0.62 ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23 Consensus pattern (50 bp): TGTAAGACCATGTCTGGGACATGGCATCGGACTCGATATAAGAGAGTAAA Found at i:76697991 original size:43 final size:43 Alignment explanation
Indices: 76697893--76698056 Score: 136 Period size: 43 Copynumber: 3.7 Consensus size: 43 76697883 AGAGAGTCAG * * 76697893 TGTAAGACCATGTCTGGGACATGGCATCGACTCAATATGTGATTAA-A 1 TGTAAGACCATGTCTAGGACATGGCATTG--T--ATATGTGA-TAACA ** * 76697940 TGTAAGACCATGTCTAGGACATTGGCATTGTAT-TGTGATTTCT 1 TGTAAGACCATGTCTAGGACA-TGGCATTGTATATGTGATAACA * * * * 76697983 TGTAAGACCCTGTGTGGGACAGTGGCATCG-ATATGTGATAACA 1 TGTAAGACCATGTCTAGGACA-TGGCATTGTATATGTGATAACA * ** 76698026 TGTAAGACCATATCTAGGGTATGGCATTGTA 1 TGTAAGACCATGTCTAGGACATGGCATTGTA 76698057 CGAGCTATAT Statistics Matches: 93, Mismatches: 20, Indels: 12 0.74 0.16 0.10 Matches are distributed among these distances: 42 10 0.11 43 53 0.57 44 2 0.02 46 1 0.01 47 20 0.22 48 7 0.08 ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31 Consensus pattern (43 bp): TGTAAGACCATGTCTAGGACATGGCATTGTATATGTGATAACA Found at i:76702151 original size:28 final size:27 Alignment explanation
Indices: 76702054--76702167 Score: 137 Period size: 27 Copynumber: 4.2 Consensus size: 27 76702044 AGCATGGCTG * * 76702054 CCAG-AACAGATATTGTGACAGAGTCA 1 CCAGAAACAGATATTGTGGCAGAGCCA 76702080 CCA-AATACAGATATTGTGGCAGAGCCA 1 CCAGAA-ACAGATATTGTGGCAGAGCCA 76702107 CCAG-AACAGATATTTGTGGC-GTAGCCA 1 CCAGAAACAGATA-TTGTGGCAG-AGCCA * 76702134 CCAGAAACAGATATTTGTGGCATAGCCA 1 CCAGAAACAGATA-TTGTGGCAGAGCCA 76702162 CCAGAA 1 CCAGAA 76702168 CACTTTCTCC Statistics Matches: 78, Mismatches: 3, Indels: 12 0.84 0.03 0.13 Matches are distributed among these distances: 26 12 0.15 27 39 0.50 28 27 0.35 ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19 Consensus pattern (27 bp): CCAGAAACAGATATTGTGGCAGAGCCA Found at i:76702167 original size:55 final size:53 Alignment explanation
Indices: 76702054--76702169 Score: 155 Period size: 55 Copynumber: 2.2 Consensus size: 53 76702044 AGCATGGCTG * 76702054 CCAGAACAGATATTGTGACAGAGTCACCAAATACAGATATTGTGGCAGAGCCA 1 CCAGAACAGATATTGTGACAGAGCCACCAAATACAGATATTGTGGCAGAGCCA * * 76702107 CCAGAACAGATATTTGTGGC-GTAGCCACCAGAA-ACAGATATTTGTGGCATAGCCA 1 CCAGAACAGATA-TTGTGACAG-AGCCACCA-AATACAGATA-TTGTGGCAGAGCCA 76702162 CCAGAACA 1 CCAGAACA 76702170 CTTTCTCCAT Statistics Matches: 56, Mismatches: 3, Indels: 6 0.86 0.05 0.09 Matches are distributed among these distances: 53 13 0.23 54 20 0.36 55 23 0.41 ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19 Consensus pattern (53 bp): CCAGAACAGATATTGTGACAGAGCCACCAAATACAGATATTGTGGCAGAGCCA Found at i:76704429 original size:28 final size:28 Alignment explanation
Indices: 76704345--76704430 Score: 82 Period size: 28 Copynumber: 3.1 Consensus size: 28 76704335 GTAGATTATT * * 76704345 GAGTATGGTACATAGTGTGCGAAACATC 1 GAGTATGGTACATAGTATGCGAGACATC * * * * * * ** 76704373 CAGAATAGCACTTAGCATGCGAGGTATC 1 GAGTATGGTACATAGTATGCGAGACATC 76704401 GAGTATGGTACATAGTATGCGAGACATC 1 GAGTATGGTACATAGTATGCGAGACATC 76704429 GA 1 GA 76704431 AGATGCAACG Statistics Matches: 40, Mismatches: 18, Indels: 0 0.69 0.31 0.00 Matches are distributed among these distances: 28 40 1.00 ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23 Consensus pattern (28 bp): GAGTATGGTACATAGTATGCGAGACATC Found at i:76707551 original size:27 final size:27 Alignment explanation
Indices: 76707437--76707545 Score: 130 Period size: 27 Copynumber: 4.0 Consensus size: 27 76707427 TAAGGGAAAA * * * 76707437 CAGTCATTTTACCCTAC-AGAGGTATGT 1 CAGTAATTTTACACTACAAG-GGTATTT * * 76707464 CGGTCATTTTACACTACAAGGGTATTT 1 CAGTAATTTTACACTACAAGGGTATTT * * 76707491 CAGTAATTTTACATTGCAAGGGTATTT 1 CAGTAATTTTACACTACAAGGGTATTT * 76707518 CAGTAATTTTATACTACAAGGGTATTT 1 CAGTAATTTTACACTACAAGGGTATTT 76707545 C 1 C 76707546 GATAATGTTA Statistics Matches: 71, Mismatches: 10, Indels: 2 0.86 0.12 0.02 Matches are distributed among these distances: 27 69 0.97 28 2 0.03 ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38 Consensus pattern (27 bp): CAGTAATTTTACACTACAAGGGTATTT Found at i:76707567 original size:27 final size:27 Alignment explanation
Indices: 76707537--76707823 Score: 203 Period size: 27 Copynumber: 10.6 Consensus size: 27 76707527 TATACTACAA * * 76707537 GGGTATTTCGATAATGTTATAAATCCG 1 GGGTATTTCGATAATTTTACAAATCCG * * 76707564 GGGTGTTTC-AGTAATTTTACAAATCGG 1 GGGTATTTCGA-TAATTTTACAAATCCG * ** 76707591 GGGTGTTTCGATAATTTTACAAATCAA 1 GGGTATTTCGATAATTTTACAAATCCG 76707618 GGGTATTTCGATAATTTTACAAAT-CG 1 GGGTATTTCGATAATTTTACAAATCCG * * 76707644 AGAGTATTTCGGTAATTTTACAAAT-CG 1 -GGGTATTTCGATAATTTTACAAATCCG * * * * *** 76707671 AAGGTGTTTCGGTAATTTTTCAAATAAA 1 -GGGTATTTCGATAATTTTACAAATCCG * * * * 76707699 GGGTGTTTTGGTAAATTTACAAAT-CG 1 GGGTATTTCGATAATTTTACAAATCCG * * * * 76707725 AGGGTGTTTTGGTAATTTTACAAATCGG 1 -GGGTATTTCGATAATTTTACAAATCCG * 76707753 GGGTATTT-TAGTAATTTTAC-AATCCGG 1 GGGTATTTCGA-TAATTTTACAAATCC-G * 76707780 GGGTACTTT-GGTAATTTTACAAAT-CG 1 GGGTA-TTTCGATAATTTTACAAATCCG * 76707806 GGGTTATTTCGGTAATTT 1 GGG-TATTTCGATAATTT 76707824 CTCTTTATTA Statistics Matches: 217, Mismatches: 31, Indels: 24 0.80 0.11 0.09 Matches are distributed among these distances: 26 12 0.06 27 197 0.91 28 8 0.04 ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39 Consensus pattern (27 bp): GGGTATTTCGATAATTTTACAAATCCG Found at i:76707600 original size:54 final size:53 Alignment explanation
Indices: 76707537--76707823 Score: 242 Period size: 54 Copynumber: 5.3 Consensus size: 53 76707527 TATACTACAA * * 76707537 GGGTATTTCGATAATGTTATAAATCCGGGGTGTTTCAGTAATTTTACAAATCGG 1 GGGTATTTCGATAAT-TTACAAATCCGGGGTGTTTCGGTAATTTTACAAATCGG * ** * * * 76707591 GGGTGTTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCGA 1 GGGTATTTCGATAA-TTTACAAATCCGGGGTGTTTCGGTAATTTTACAAATCGG * * * * *** 76707645 GAGTATTTCGGTAATTTTACAAAT-CGAAGGTGTTTCGGTAATTTTTCAAATAAA 1 GGGTATTTCGATAA-TTTACAAATCCG-GGGTGTTTCGGTAATTTTACAAATCGG * * * * 76707699 GGGTGTTTTGGTAAATTTACAAAT-CGAGGGTGTTTTGGTAATTTTACAAATCGG 1 GGGTATTTCGAT-AATTTACAAATCCG-GGGTGTTTCGGTAATTTTACAAATCGG * * 76707753 GGGTATTT-TAGTAATTTTAC-AATCCGGGG-GTACTTTGGTAATTTTACAAATCGG 1 GGGTATTTCGA-TAA-TTTACAAATCCGGGGTGT--TTCGGTAATTTTACAAATCGG * * 76707807 GGTTATTTCGGTAATTT 1 GGGTATTTCGATAATTT 76707824 CTCTTTATTA Statistics Matches: 190, Mismatches: 34, Indels: 19 0.78 0.14 0.08 Matches are distributed among these distances: 52 2 0.01 53 11 0.06 54 174 0.92 55 3 0.02 ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39 Consensus pattern (53 bp): GGGTATTTCGATAATTTACAAATCCGGGGTGTTTCGGTAATTTTACAAATCGG Found at i:76707767 original size:81 final size:80 Alignment explanation
Indices: 76707535--76707774 Score: 268 Period size: 81 Copynumber: 3.0 Consensus size: 80 76707525 TTTATACTAC * * * 76707535 AAGGGTATTTCGAT-AATGTTATAAATCCG-GGGTGTTTCAGTAATTTTACAAATCGGGGGTGTT 1 AAGGGTATTTCGATAAAT-TTACAAAT-CGAGGGTGTTTCGGTAATTTTACAAATCGGGGGTTTT * * 76707598 TCGATAATTTTACAAATC 64 TAG-TAATTTTACAAATA * * * ** * 76707616 AAGGGTATTTCGATAATTTTACAAATCGAGAGTATTTCGGTAATTTTACAAATCGAAGGTGTTTC 1 AAGGGTATTTCGATAAATTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGGGGGT-TTTT * * 76707681 GGTAATTTTTCAAATA 65 AGTAATTTTACAAATA * * * * 76707697 AAGGGTGTTTTGGTAAATTTACAAATCGAGGGTGTTTTGGTAATTTTACAAATCGGGGGTATTTT 1 AAGGGTATTTCGATAAATTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGGGGGT-TTTT 76707762 AGTAATTTTACAA 65 AGTAATTTTACAA 76707775 TCCGGGGGTA Statistics Matches: 131, Mismatches: 25, Indels: 6 0.81 0.15 0.04 Matches are distributed among these distances: 80 2 0.02 81 124 0.95 82 5 0.04 ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38 Consensus pattern (80 bp): AAGGGTATTTCGATAAATTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGGGGGTTTTTA GTAATTTTACAAATA Found at i:76707790 original size:81 final size:79 Alignment explanation
Indices: 76707537--76707823 Score: 258 Period size: 81 Copynumber: 3.5 Consensus size: 79 76707527 TATACTACAA * * * * * * 76707537 GGGTATTTCGATAATGTTATAAATCCG-GGGTGTTTCAGTAATTTTACAAATCGGGGGTGTTTCG 1 GGGTATTT-GGTAATTTTACAAAT-CGAGGGTGTTTCGGTAATTTTACAAATCGGGGGTTTTTAG ** 76707601 ATAATTTTACAAATCAA 64 -TAATTTTACAAATCGG * * * ** ** 76707618 GGGTATTTCGATAATTTTACAAATCGAGAGTATTTCGGTAATTTTACAAATCGAAGGTGTTTCGG 1 GGGTATTT-GGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGGGGGT-TTTTAG * * 76707683 TAATTTTTCAAATAAAGG 64 TAATTTTACAAAT--CGG * * * 76707701 GTGT-TTTGGTAAATTTACAAATCGAGGGTGTTTTGGTAATTTTACAAATCGGGGGTATTTTAGT 1 GGGTATTTGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGGGGGT-TTTTAGT 76707765 AATTTTAC-AATCCGG 65 AATTTTACAAAT-CGG * 76707780 GGGTACTTTGGTAATTTTACAAATCG-GGGTTATTTCGGTAATTT 1 GGGTA-TTTGGTAATTTTACAAATCGAGGG-TGTTTCGGTAATTT 76707824 CTCTTTATTA Statistics Matches: 167, Mismatches: 32, Indels: 14 0.78 0.15 0.07 Matches are distributed among these distances: 79 5 0.03 80 8 0.05 81 145 0.87 82 6 0.04 83 3 0.02 ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39 Consensus pattern (79 bp): GGGTATTTGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGGGGGTTTTTAGTA ATTTTACAAATCGG Found at i:76710340 original size:16 final size:16 Alignment explanation
Indices: 76710302--76710341 Score: 53 Period size: 16 Copynumber: 2.5 Consensus size: 16 76710292 AAATGCAATT * 76710302 ATAAAAATAAAAAGTA 1 ATAAAAATAAAAAATA * * 76710318 GTTAAAATAAAAAATA 1 ATAAAAATAAAAAATA 76710334 ATAAAAAT 1 ATAAAAAT 76710342 TCCACTTTTT Statistics Matches: 19, Mismatches: 5, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 16 19 1.00 ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23 Consensus pattern (16 bp): ATAAAAATAAAAAATA Found at i:76714209 original size:12 final size:12 Alignment explanation
Indices: 76714192--76714219 Score: 56 Period size: 12 Copynumber: 2.3 Consensus size: 12 76714182 CACACACGCT 76714192 CGTGTGCTAGGC 1 CGTGTGCTAGGC 76714204 CGTGTGCTAGGC 1 CGTGTGCTAGGC 76714216 CGTG 1 CGTG 76714220 CCAAACCTGT Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 16 1.00 ACGTcount: A:0.07, C:0.25, G:0.43, T:0.25 Consensus pattern (12 bp): CGTGTGCTAGGC Found at i:76720477 original size:40 final size:41 Alignment explanation
Indices: 76720394--76720474 Score: 105 Period size: 42 Copynumber: 2.0 Consensus size: 41 76720384 ATAACTATAA * 76720394 AATAAAATTTTAAAATCTAATAAAAAATAAAAAAATAGTTTT 1 AATAAAAATTTAAAATC-AATAAAAAATAAAAAAATAGTTTT * 76720436 AATAAAAATTTAAAA-C-ATAAAATAATAAATAAAT-GTTTT 1 AATAAAAATTTAAAATCAATAAAA-AATAAAAAAATAGTTTT 76720475 TAAACATCTT Statistics Matches: 36, Mismatches: 2, Indels: 5 0.84 0.05 0.12 Matches are distributed among these distances: 39 11 0.31 40 10 0.28 41 1 0.03 42 14 0.39 ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33 Consensus pattern (41 bp): AATAAAAATTTAAAATCAATAAAAAATAAAAAAATAGTTTT Found at i:76730494 original size:61 final size:61 Alignment explanation
Indices: 76730399--76730520 Score: 226 Period size: 61 Copynumber: 2.0 Consensus size: 61 76730389 CTCAAATGCT 76730399 CGGCATACTCAGACTAATCTCGTGAATAGATTAGAATGTCGTCAATAAATACCCTAACAAA 1 CGGCATACTCAGACTAATCTCGTGAATAGATTAGAATGTCGTCAATAAATACCCTAACAAA * * 76730460 CGGCATTCTCAGACTCATCTCGTGAATAGATTAGAATGTCGTCAATAAATACCCTAACAAA 1 CGGCATACTCAGACTAATCTCGTGAATAGATTAGAATGTCGTCAATAAATACCCTAACAAA 76730521 TCTATCTAAA Statistics Matches: 59, Mismatches: 2, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 61 59 1.00 ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25 Consensus pattern (61 bp): CGGCATACTCAGACTAATCTCGTGAATAGATTAGAATGTCGTCAATAAATACCCTAACAAA Found at i:76735063 original size:27 final size:27 Alignment explanation
Indices: 76735033--76735600 Score: 682 Period size: 27 Copynumber: 21.0 Consensus size: 27 76735023 AAAGTACTCC * 76735033 CGATTTACAGAATTATCGTTTTACCCT 1 CGATTTACAGAATTACCGTTTTACCCT * 76735060 CGATTTACAGAATTATCGTTTTACCCT 1 CGATTTACAGAATTACCGTTTTACCCT * 76735087 CGATTTACAAAATTACCGTTTTACCCT 1 CGATTTACAGAATTACCGTTTTACCCT * * 76735114 C-AGTTTATAGAATTACCATTTTACCCT 1 CGA-TTTACAGAATTACCGTTTTACCCT * 76735141 CGATTTACAGAATTATCGTTTTACCCT 1 CGATTTACAGAATTACCGTTTTACCCT * 76735168 CGATTTACAAAATTACCGTTTTACCCT 1 CGATTTACAGAATTACCGTTTTACCCT * * 76735195 C-AGTTTATAGAATTACCATTTTACCCT 1 CGA-TTTACAGAATTACCGTTTTACCCT * 76735222 CGATTTACAGAATTACCATTTTACCCT 1 CGATTTACAGAATTACCGTTTTACCCT ** 76735249 C-AGTTTACAGAATTACTATTTTACCCT 1 CGA-TTTACAGAATTACCGTTTTACCCT ** 76735276 CGATTTACAGAATTACTATTTTACCCT 1 CGATTTACAGAATTACCGTTTTACCCT * *** 76735303 CAATTAGTA-A-AATTATTATTTTACCCT 1 CGATT--TACAGAATTACCGTTTTACCCT 76735330 CGATTTACAGAATTACCGTTTTACCCT 1 CGATTTACAGAATTACCGTTTTACCCT * * 76735357 C-AGTTTATAGAATTACCATTTTACCCT 1 CGA-TTTACAGAATTACCGTTTTACCCT 76735384 CGATTTACAGAATTACCGTTTTACCCT 1 CGATTTACAGAATTACCGTTTTACCCT * * 76735411 C-AGTTTATAGAATTACCATTTTACCCT 1 CGA-TTTACAGAATTACCGTTTTACCCT * 76735438 CGATTTACAGAATTATCGTTTTACCCT 1 CGATTTACAGAATTACCGTTTTACCCT * * 76735465 CAATTTACAGAATTACTGTTTTACCCT 1 CGATTTACAGAATTACCGTTTTACCCT ** * 76735492 CGATTTGTAAAATTACCGTTTTACCCT 1 CGATTTACAGAATTACCGTTTTACCCT * * * * 76735519 CGATTTATAGAATTACTGGTTTACCTT 1 CGATTTACAGAATTACCGTTTTACCCT * * * 76735546 CGGTTTACAAAATTATCGTTTTACCCT 1 CGATTTACAGAATTACCGTTTTACCCT * * * 76735573 CAATTTATAGAATTACTGTTTTACCCT 1 CGATTTACAGAATTACCGTTTTACCCT 76735600 C 1 C 76735601 AATTGTGAAA Statistics Matches: 471, Mismatches: 56, Indels: 28 0.85 0.10 0.05 Matches are distributed among these distances: 25 2 0.00 26 6 0.01 27 455 0.97 28 6 0.01 29 2 0.00 ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40 Consensus pattern (27 bp): CGATTTACAGAATTACCGTTTTACCCT Found at i:76735639 original size:27 final size:27 Alignment explanation
Indices: 76735609--76735803 Score: 212 Period size: 27 Copynumber: 7.2 Consensus size: 27 76735599 TCAATTGTGA * 76735609 AATTACTAAAATACCCCTGTAGGGTAG 1 AATTACTGAAATACCCCTGTAGGGTAG * * 76735636 AATTACCGAAATACCCCTATAGGGTAG 1 AATTACTGAAATACCCCTGTAGGGTAG * * * 76735663 AATTACTAAAATACCCTTATAGGGTAG 1 AATTACTGAAATACCCCTGTAGGGTAG * * 76735690 AATTACTGAAATACCCCCGTAGGATAG 1 AATTACTGAAATACCCCTGTAGGGTAG * 76735717 AATTA-TCGAAATACCCCCGTAGGGTAG 1 AATTACT-GAAATACCCCTGTAGGGTAG * * * 76735744 AAATACCGAAATATCCCTGTAGGGTAG 1 AATTACTGAAATACCCCTGTAGGGTAG * * ** * * 76735771 AATTACCGAGATACCTTTGTGGGGTAA 1 AATTACTGAAATACCCCTGTAGGGTAG 76735798 AATTAC 1 AATTAC 76735804 CATTTTGCCC Statistics Matches: 143, Mismatches: 23, Indels: 4 0.84 0.14 0.02 Matches are distributed among these distances: 26 1 0.01 27 142 0.99 ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25 Consensus pattern (27 bp): AATTACTGAAATACCCCTGTAGGGTAG Found at i:76736064 original size:27 final size:26 Alignment explanation
Indices: 76736007--76736081 Score: 78 Period size: 27 Copynumber: 2.8 Consensus size: 26 76735997 GGAAGCATTC * * * 76736007 TGGTGGCTATGCCACAAATATCTGTTC 1 TGGTGGCTCTGCCAC-AATATTTGTTA * 76736034 TGGTGGTTCTGCCACAATATTTGTATA 1 TGGTGGCTCTGCCACAATATTTGT-TA * * 76736061 TGGTGACTCTGTCACAATATT 1 TGGTGGCTCTGCCACAATATT 76736082 AGCCATAAAG Statistics Matches: 40, Mismatches: 7, Indels: 2 0.82 0.14 0.04 Matches are distributed among these distances: 26 8 0.20 27 32 0.80 ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37 Consensus pattern (26 bp): TGGTGGCTCTGCCACAATATTTGTTA Found at i:76737342 original size:8 final size:8 Alignment explanation
Indices: 76737300--76737324 Score: 50 Period size: 8 Copynumber: 3.1 Consensus size: 8 76737290 ATATAGACTA 76737300 AATAAAAT 1 AATAAAAT 76737308 AATAAAAT 1 AATAAAAT 76737316 AATAAAAT 1 AATAAAAT 76737324 A 1 A 76737325 TCTTATTAAA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 17 1.00 ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24 Consensus pattern (8 bp): AATAAAAT Found at i:76737348 original size:29 final size:31 Alignment explanation
Indices: 76737297--76737369 Score: 82 Period size: 29 Copynumber: 2.5 Consensus size: 31 76737287 TATATATAGA * 76737297 CTAAATAAAATAATAAAATAATAA-AA-TAT 1 CTAATTAAAATAATAAAATAATAATAATTAT * * 76737326 CTTATTAAAAT-ATTAAATAAATAATAATTAT 1 CTAATTAAAATAATAAAAT-AATAATAATTAT 76737357 CTAATT-AAATAAT 1 CTAATTAAAATAAT 76737370 TATAAAATAT Statistics Matches: 36, Mismatches: 4, Indels: 6 0.78 0.09 0.13 Matches are distributed among these distances: 28 6 0.17 29 14 0.39 30 6 0.17 31 10 0.28 ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36 Consensus pattern (31 bp): CTAATTAAAATAATAAAATAATAATAATTAT Found at i:76737374 original size:29 final size:30 Alignment explanation
Indices: 76737304--76737375 Score: 71 Period size: 31 Copynumber: 2.4 Consensus size: 30 76737294 AGACTAAATA * 76737304 AAATAA-TA-AAATAATAAAATATCTTATT 1 AAATAATTATAAATAATAAAATATCTAATT * 76737332 AAA-ATATTAAATAAATAAT-AATTATCTAATT 1 AAATA-ATT--ATAAATAATAAAATATCTAATT 76737363 AAATAATTATAAA 1 AAATAATTATAAA 76737376 ATATCACCAA Statistics Matches: 36, Mismatches: 2, Indels: 11 0.73 0.04 0.22 Matches are distributed among these distances: 27 1 0.03 28 4 0.11 29 6 0.17 31 17 0.47 32 8 0.22 ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36 Consensus pattern (30 bp): AAATAATTATAAATAATAAAATATCTAATT Found at i:76741422 original size:43 final size:43 Alignment explanation
Indices: 76741374--76741539 Score: 160 Period size: 43 Copynumber: 3.9 Consensus size: 43 76741364 TATCGAGAGA * * 76741374 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTGTAT 1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT * * * 76741417 TGTGATTACGTGTAAGACCATGTCTGGGATATTGGCATCGTTAA 1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAT * * * * * 76741461 T-CGATTTCGTTTAAGACCCTGTCT-GGAGCATTGGCATCG-AT 1 TGTGATTACATGTAAGACCATGTCTGGGA-CATTGGCATCGTAT * * * 76741502 ATGTGATAACATGTAAGACCATATCTAGGACA-TGGCAT 1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT 76741540 TGTACAAGCT Statistics Matches: 100, Mismatches: 18, Indels: 11 0.78 0.14 0.09 Matches are distributed among these distances: 41 1 0.01 42 10 0.10 43 83 0.83 44 6 0.06 ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33 Consensus pattern (43 bp): TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT Found at i:76749344 original size:33 final size:33 Alignment explanation
Indices: 76749253--76749410 Score: 122 Period size: 33 Copynumber: 4.8 Consensus size: 33 76749243 ATATAATAGG * * * * * 76749253 GTAAGTCTTCTGGGATAGCAAACA-AAGAACAAA 1 GTAAGTCTGCTAGGACAGTAAACACAA-AACAGA * * * 76749286 GTAAGTCCGCTAAGACAGTAGACACAAAACAGA 1 GTAAGTCTGCTAGGACAGTAAACACAAAACAGA * * * * 76749319 GTAAGTCTGCTAGGATAATAAACACAAAATAGG 1 GTAAGTCTGCTAGGACAGTAAACACAAAACAGA * * * 76749352 GTAAGCCTGCCAGGACAGTAAACACAGAACATG- 1 GTAAGTCTGCTAGGACAGTAAACACAAAACA-GA * * * 76749385 GTAACTCTGCTGGGACACTAAACACA 1 GTAAGTCTGCTAGGACAGTAAACACA 76749411 GGAGAGTCCA Statistics Matches: 97, Mismatches: 26, Indels: 4 0.76 0.20 0.03 Matches are distributed among these distances: 33 94 0.97 34 3 0.03 ACGTcount: A:0.42, C:0.20, G:0.22, T:0.16 Consensus pattern (33 bp): GTAAGTCTGCTAGGACAGTAAACACAAAACAGA Found at i:76751427 original size:22 final size:20 Alignment explanation
Indices: 76751402--76751444 Score: 59 Period size: 20 Copynumber: 2.0 Consensus size: 20 76751392 GAAGTTTCGA 76751402 TAGTTTAACTTAGGTTTAATTT 1 TAGTTTAA-TTA-GTTTAATTT * 76751424 TAGTTTAATTAGTTTTATTT 1 TAGTTTAATTAGTTTAATTT 76751444 T 1 T 76751445 CAACTTAATT Statistics Matches: 20, Mismatches: 1, Indels: 2 0.87 0.04 0.09 Matches are distributed among these distances: 20 9 0.45 21 3 0.15 22 8 0.40 ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60 Consensus pattern (20 bp): TAGTTTAATTAGTTTAATTT Found at i:76765154 original size:33 final size:34 Alignment explanation
Indices: 76765087--76765155 Score: 88 Period size: 33 Copynumber: 2.1 Consensus size: 34 76765077 AAGGAATGTT * * 76765087 TGGTTGAGTGTTGAGCAAATGATGCATTATTCTA 1 TGGTTGAATGTTGAGCAAATGATGCATTACTCTA * 76765121 TGGTTGAATG-TGTGCAAATGATG-AGTTACTCTA 1 TGGTTGAATGTTGAGCAAATGATGCA-TTACTCTA 76765154 TG 1 TG 76765156 ACTGAATATT Statistics Matches: 31, Mismatches: 3, Indels: 3 0.84 0.08 0.08 Matches are distributed among these distances: 32 1 0.03 33 21 0.68 34 9 0.29 ACGTcount: A:0.26, C:0.09, G:0.28, T:0.38 Consensus pattern (34 bp): TGGTTGAATGTTGAGCAAATGATGCATTACTCTA Found at i:76767777 original size:21 final size:20 Alignment explanation
Indices: 76767738--76767779 Score: 59 Period size: 20 Copynumber: 2.0 Consensus size: 20 76767728 GGTCGTATTT 76767738 ATATAAGTTGAATAAACTTA 1 ATATAAGTTGAATAAACTTA 76767758 ATATAGAG-TGAATAAAACTTA 1 ATATA-AGTTGAAT-AAACTTA 76767779 A 1 A 76767780 ATTGGAATTT Statistics Matches: 20, Mismatches: 0, Indels: 3 0.87 0.00 0.13 Matches are distributed among these distances: 20 10 0.50 21 10 0.50 ACGTcount: A:0.52, C:0.05, G:0.12, T:0.31 Consensus pattern (20 bp): ATATAAGTTGAATAAACTTA Found at i:76769076 original size:22 final size:22 Alignment explanation
Indices: 76769048--76769095 Score: 96 Period size: 22 Copynumber: 2.2 Consensus size: 22 76769038 GAGTCCCGGT 76769048 GTTAAAAAAAATCATATCTCAA 1 GTTAAAAAAAATCATATCTCAA 76769070 GTTAAAAAAAATCATATCTCAA 1 GTTAAAAAAAATCATATCTCAA 76769092 GTTA 1 GTTA 76769096 CACATAGTAG Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 22 26 1.00 ACGTcount: A:0.52, C:0.12, G:0.06, T:0.29 Consensus pattern (22 bp): GTTAAAAAAAATCATATCTCAA Found at i:76770690 original size:15 final size:15 Alignment explanation
Indices: 76770634--76770698 Score: 73 Period size: 15 Copynumber: 4.4 Consensus size: 15 76770624 TAAAGATAAC * 76770634 AAGAAAACC-GAATA 1 AAGAAATCCAGAATA 76770648 AAGAAATCCA-AGATA 1 AAGAAATCCAGA-ATA * 76770663 GAA-AAACCCAGAATA 1 -AAGAAATCCAGAATA 76770678 AAGAAATCCAGAATA 1 AAGAAATCCAGAATA 76770693 AAGAAA 1 AAGAAA 76770699 CCTAAGATAC Statistics Matches: 43, Mismatches: 3, Indels: 9 0.78 0.05 0.16 Matches are distributed among these distances: 14 11 0.26 15 29 0.67 16 3 0.07 ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09 Consensus pattern (15 bp): AAGAAATCCAGAATA Found at i:76770700 original size:30 final size:30 Alignment explanation
Indices: 76770634--76770700 Score: 86 Period size: 30 Copynumber: 2.3 Consensus size: 30 76770624 TAAAGATAAC * 76770634 AAGAAAACCGAATAAAGAAATCCAAGATAG 1 AAGAAACCCGAATAAAGAAATCCAAGATAG 76770664 AA-AAACCCAGAATAAAGAAATCC-AGAATA- 1 AAGAAACCC-GAATAAAGAAATCCAAG-ATAG 76770693 AAGAAACC 1 AAGAAACC 76770701 TAAGATACGA Statistics Matches: 33, Mismatches: 1, Indels: 6 0.82 0.03 0.15 Matches are distributed among these distances: 29 9 0.27 30 24 0.73 ACGTcount: A:0.61, C:0.16, G:0.13, T:0.09 Consensus pattern (30 bp): AAGAAACCCGAATAAAGAAATCCAAGATAG Found at i:76771012 original size:39 final size:39 Alignment explanation
Indices: 76770969--76771043 Score: 150 Period size: 39 Copynumber: 1.9 Consensus size: 39 76770959 GGAATAGAGC 76770969 AATATAAATTATAAACCAGTCAGGCTACCAATGCTTAGA 1 AATATAAATTATAAACCAGTCAGGCTACCAATGCTTAGA 76771008 AATATAAATTATAAACCAGTCAGGCTACCAATGCTT 1 AATATAAATTATAAACCAGTCAGGCTACCAATGCTT 76771044 TCATTTAACA Statistics Matches: 36, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 39 36 1.00 ACGTcount: A:0.43, C:0.19, G:0.12, T:0.27 Consensus pattern (39 bp): AATATAAATTATAAACCAGTCAGGCTACCAATGCTTAGA Found at i:76773914 original size:50 final size:49 Alignment explanation
Indices: 76773752--76773976 Score: 265 Period size: 49 Copynumber: 4.5 Consensus size: 49 76773742 CTGGTATGCA * * * 76773752 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTAT-TCGGTACACG 1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCT-GGTACACG * 76773801 TAGTAGCCTGCACTTTGTACTACACACGTGACCAATTATCTGGTACACG 1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG ** * 76773850 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG 1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACG * * * * * * 76773900 TAGTAGCCTACACTTAGTACTGCACACGTGATCATAGTTTTC-GAGTACGCA 1 TAGTAGCCTGCACTTAGTACTACACACGTGACCA-A-TTATCTG-GTACACG * 76773951 TAGTAGCTTGCACTTAGTACTACACA 1 TAGTAGCCTGCACTTAGTACTACACA 76773977 TGCGACCTCA Statistics Matches: 151, Mismatches: 20, Indels: 8 0.84 0.11 0.04 Matches are distributed among these distances: 49 76 0.50 50 46 0.30 51 29 0.19 ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27 Consensus pattern (49 bp): TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG Found at i:76773930 original size:99 final size:100 Alignment explanation
Indices: 76773750--76773983 Score: 278 Period size: 99 Copynumber: 2.4 Consensus size: 100 76773740 ATCTGGTATG * * ** * * 76773750 CATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATTCGGTACACGTAGTAGCCTGCACT 1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATTCGATACACGTAGTAGCCTACACT * 76773815 TTGTACTACACACGTGACCA-A-TTATCTG-GTACA 66 TAGTACTACACACGTGACCATAGTTATC-GAGTACA * * 76773848 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA-TCTGATACACGTAGTAGCCTACA 1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATTC-GATACACGTAGTAGCCTACA * * * * 76773912 CTTAGTACTGCACACGTGATCATAGTTTTCGAGTACG 64 CTTAGTACTACACACGTGACCATAGTTATCGAGTACA * * 76773949 CATAGTAGCTTGCACTTAGTACTACACATGCGACC 1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC 76773984 TCACAATAGA Statistics Matches: 114, Mismatches: 17, Indels: 7 0.83 0.12 0.05 Matches are distributed among these distances: 98 33 0.29 99 40 0.35 100 2 0.02 101 39 0.34 ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26 Consensus pattern (100 bp): CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATTCGATACACGTAGTAGCCTACACT TAGTACTACACACGTGACCATAGTTATCGAGTACA Found at i:76778361 original size:27 final size:26 Alignment explanation
Indices: 76778331--76778462 Score: 140 Period size: 27 Copynumber: 4.9 Consensus size: 26 76778321 GGAAAAATGG * * 76778331 TAATTTTACCCCACGAGGGTATCTCGA 1 TAATTTTACCCTAC-AGGGTATTTCGA * 76778358 TAATTCTACCCTACAGGGGTATTTCGA 1 TAATTTTACCCTACA-GGGTATTTCGA 76778385 T-ATTTCTACCCTACAAGGGTATTTCGA 1 TAATTT-TACCCTAC-AGGGTATTTCGA * * * 76778412 TAATTCTATCCTACAGGGGTATTTCGT 1 TAATTTTACCCTACA-GGGTATTTCGA * 76778439 TAATTCTACCCTACAGGGGTATTT 1 TAATTTTACCCTACA-GGGTATTT 76778463 TAGTAATTCT Statistics Matches: 92, Mismatches: 8, Indels: 10 0.84 0.07 0.09 Matches are distributed among these distances: 26 5 0.05 27 83 0.90 28 4 0.04 ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36 Consensus pattern (26 bp): TAATTTTACCCTACAGGGTATTTCGA Found at i:76778461 original size:54 final size:54 Alignment explanation
Indices: 76778331--76778462 Score: 192 Period size: 54 Copynumber: 2.4 Consensus size: 54 76778321 GGAAAAATGG * * * * 76778331 TAATTTTACCCCACGAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGA 1 TAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA * * * 76778385 TATTTCTACCCTACAAGGGTATTTCGATAATTCTATCCTACAGGGGTATTTCGT 1 TAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA * 76778439 TAATTCTACCCTACAGGGGTATTT 1 TAATTCTACCCTACAAGGGTATTT 76778463 TAGTAATTCT Statistics Matches: 69, Mismatches: 9, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 54 69 1.00 ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36 Consensus pattern (54 bp): TAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA Found at i:76778474 original size:27 final size:27 Alignment explanation
Indices: 76778347--76778462 Score: 187 Period size: 27 Copynumber: 4.3 Consensus size: 27 76778337 TACCCCACGA * 76778347 GGGTATCTCGATAATTCTACCCTACAG 1 GGGTATTTCGATAATTCTACCCTACAG * * 76778374 GGGTATTTCGATATTTCTACCCTACAA 1 GGGTATTTCGATAATTCTACCCTACAG * 76778401 GGGTATTTCGATAATTCTATCCTACAG 1 GGGTATTTCGATAATTCTACCCTACAG * 76778428 GGGTATTTCGTTAATTCTACCCTACAG 1 GGGTATTTCGATAATTCTACCCTACAG 76778455 GGGTATTT 1 GGGTATTT 76778463 TAGTAATTCT Statistics Matches: 81, Mismatches: 8, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 27 81 1.00 ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36 Consensus pattern (27 bp): GGGTATTTCGATAATTCTACCCTACAG Found at i:76782588 original size:28 final size:28 Alignment explanation
Indices: 76782546--76782655 Score: 150 Period size: 28 Copynumber: 3.9 Consensus size: 28 76782536 ATGACTGTAG * 76782546 ATGTGATTGGACCTAAT-GGCCATATGA 1 ATGTGATTGGGCCTAATGGGCCATATGA * * 76782573 ATGTGATTTGGGCCTAATGGGCCACATAA 1 ATGTGA-TTGGGCCTAATGGGCCATATGA 76782602 ATGTGATTGGGCCTAATGGGCCATATGA 1 ATGTGATTGGGCCTAATGGGCCATATGA * * * 76782630 AAGAGATTGGGCCTAATGGGCTATAT 1 ATGTGATTGGGCCTAATGGGCCATAT 76782656 ACAGGTATAT Statistics Matches: 73, Mismatches: 8, Indels: 3 0.87 0.10 0.04 Matches are distributed among these distances: 27 6 0.08 28 53 0.73 29 14 0.19 ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28 Consensus pattern (28 bp): ATGTGATTGGGCCTAATGGGCCATATGA Found at i:76794639 original size:37 final size:37 Alignment explanation
Indices: 76794589--76794667 Score: 113 Period size: 37 Copynumber: 2.1 Consensus size: 37 76794579 TTATTACGAA * * * 76794589 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG 1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG * * 76794626 GTCTTACTCGGACAAAATCCCCACACGTAGTCATCGG 1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG 76794663 GTCTT 1 GTCTT 76794668 TAGAGCTCGG Statistics Matches: 37, Mismatches: 5, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 37 37 1.00 ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25 Consensus pattern (37 bp): GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG Found at i:76794862 original size:49 final size:49 Alignment explanation
Indices: 76794785--76794942 Score: 266 Period size: 49 Copynumber: 3.2 Consensus size: 49 76794775 GCCCTTCGGG * 76794785 ACTTATCACATTCATCACATTGGCCATTAGGCCCTATCACATATATATAC 1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC 76794835 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC 1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC * * 76794884 ATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC 1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC 76794931 ACTTTCACATTC 1 ACTTTCACATTC 76794943 TCAAAGTAAG Statistics Matches: 104, Mismatches: 4, Indels: 3 0.94 0.04 0.03 Matches are distributed among these distances: 47 19 0.18 49 81 0.78 50 4 0.04 ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33 Consensus pattern (49 bp): ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC Found at i:76798405 original size:16 final size:16 Alignment explanation
Indices: 76798384--76798415 Score: 64 Period size: 16 Copynumber: 2.0 Consensus size: 16 76798374 ATTGATTAGA 76798384 TAAGTTAATTTTGATT 1 TAAGTTAATTTTGATT 76798400 TAAGTTAATTTTGATT 1 TAAGTTAATTTTGATT 76798416 ACTTATAGAT Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 16 1.00 ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56 Consensus pattern (16 bp): TAAGTTAATTTTGATT Found at i:76802001 original size:27 final size:26 Alignment explanation
Indices: 76801953--76802012 Score: 75 Period size: 27 Copynumber: 2.3 Consensus size: 26 76801943 GCGAGGCTGC * 76801953 CAGATATTGTGACGAAGTCACCAGATA 1 CAGATATTGTGACGAAGCCACCAGA-A * * * 76801980 CAGATATTGTGGCTAGGCCACCAGAA 1 CAGATATTGTGACGAAGCCACCAGAA 76802006 CAGATAT 1 CAGATAT 76802013 ATATATGTGG Statistics Matches: 29, Mismatches: 4, Indels: 1 0.85 0.12 0.03 Matches are distributed among these distances: 26 8 0.28 27 21 0.72 ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22 Consensus pattern (26 bp): CAGATATTGTGACGAAGCCACCAGAA Found at i:76807413 original size:47 final size:45 Alignment explanation
Indices: 76807360--76807509 Score: 149 Period size: 49 Copynumber: 3.2 Consensus size: 45 76807350 AAGGATAATA * * 76807360 TAAAAATATATACATGAAATAGTATAAAAACATATAACTAATGGTAT 1 TAAAAATATATACATGAAATA-CATAAAAATATATAA-TAATGGTAT * * * 76807407 TAAAAATACATACATGAGATAACAT-AAAATATATGAATAGTAGGATATT 1 TAAAAATATATACATGAAAT-ACATAAAAATATAT-AATAAT-GG-TA-T * * * 76807456 TAAAAATATATACATAAAATACATAAATATATATAATTAATGGTAC 1 TAAAAATATATACATGAAATACATAAAAATATATAA-TAATGGTAT 76807502 TAAAAATA 1 TAAAAATA 76807510 CTTACATAAT Statistics Matches: 85, Mismatches: 11, Indels: 15 0.77 0.10 0.14 Matches are distributed among these distances: 46 19 0.22 47 26 0.31 48 11 0.13 49 29 0.34 ACGTcount: A:0.56, C:0.06, G:0.08, T:0.30 Consensus pattern (45 bp): TAAAAATATATACATGAAATACATAAAAATATATAATAATGGTAT Found at i:76807469 original size:49 final size:49 Alignment explanation
Indices: 76807342--76807496 Score: 142 Period size: 49 Copynumber: 3.2 Consensus size: 49 76807332 ACTAATATTA * ** * 76807342 ATAA-TAATAAGGATAATATAAAAATATATACATGAAATAGTATAAAAACAT 1 ATAACTAAT-AGGAT-ATTTAAAAATATATACATGAAATAACAT-AAAATAT * * 76807393 ATAACTAAT-GG-TA-TTAAAAATACATACATGAGATAACATAAAATAT 1 ATAACTAATAGGATATTTAAAAATATATACATGAAATAACATAAAATAT * * 76807439 ATGAA-TAGTAGGATATTTAAAAATATATACATAAAAT-ACATAAATATAT 1 AT-AACTAATAGGATATTTAAAAATATATACATGAAATAACATAAA-ATAT * 76807488 ATAATTAAT 1 ATAACTAAT 76807497 GGTACTAAAA Statistics Matches: 86, Mismatches: 11, Indels: 16 0.76 0.10 0.14 Matches are distributed among these distances: 46 11 0.13 47 25 0.29 48 12 0.14 49 28 0.33 50 2 0.02 51 4 0.05 52 4 0.05 ACGTcount: A:0.57, C:0.05, G:0.08, T:0.30 Consensus pattern (49 bp): ATAACTAATAGGATATTTAAAAATATATACATGAAATAACATAAAATAT Found at i:76807698 original size:17 final size:18 Alignment explanation
Indices: 76807661--76807700 Score: 55 Period size: 17 Copynumber: 2.3 Consensus size: 18 76807651 TAACAATAAC * 76807661 AAAATATTGATAATAAAT 1 AAAATAATGATAATAAAT * 76807679 AAAATAATGAT-ATTAAT 1 AAAATAATGATAATAAAT 76807696 AAAAT 1 AAAAT 76807701 GTAATAGTAT Statistics Matches: 20, Mismatches: 2, Indels: 1 0.87 0.09 0.04 Matches are distributed among these distances: 17 10 0.50 18 10 0.50 ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33 Consensus pattern (18 bp): AAAATAATGATAATAAAT Found at i:76809613 original size:88 final size:88 Alignment explanation
Indices: 76809326--76809804 Score: 440 Period size: 88 Copynumber: 5.4 Consensus size: 88 76809316 GTGATCTTGA ** * * * * * * 76809326 GCTCAACTCATTTCTCGCAATATGAATTGA-CTCTTTAAAAACAGACATT--AAAAACAGAAATT 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATATAAATTGAAAAAACAG-AATT * * * 76809388 GAAAATAGCTCAGCACGTGAACC-AAG 65 GAAAATACCTCA--ACGTG-TCCTGAG * * * * * * 76809414 GCTCAACTCACCTCTCGCAATATGAGTTG--GTTTTTGAAACT-TAATTTGAAAAGA-AGATTTT 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATATAAATTGAAAAAACAGA-ATT * * * * 76809475 GAAAATACCTCGCCATGTGACCCGAG 65 GAAAATACCT--CAACGTGTCCTGAG 76809501 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATATAAATTGAAAAAACAGAATTG 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATATAAATTGAAAAAACAGAATTG * 76809566 AAAATACCTCAACGTGTGCTGAG 66 AAAATACCTCAACGTGTCCTGAG ** * 76809589 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAGCAGAAATTGAAAAGCAA-A- 1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTT-AAAAATATAAATTGAAAA--AACAG * * * 76809652 AATTGAAAATACTTCAGCGTGCCCTGAG 61 AATTGAAAATACCTCAACGTGTCCTGAG * * * * * 76809680 ACTCAACTCACCTCTTGCAATATGAGTT-AATTTTTGAAGAATATAAATTGAAAAAACAGAAATT 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATATAAATTGAAAAAACAG-AATT * * 76809744 GAAAATACCTCAGCATGTCCTGAG 65 GAAAATACCTCAACGTGTCCTGAG * 76809768 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTT 1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT 76809805 TGAAAGACAG Statistics Matches: 321, Mismatches: 51, Indels: 37 0.78 0.12 0.09 Matches are distributed among these distances: 85 2 0.01 86 8 0.02 87 69 0.21 88 124 0.39 89 16 0.05 90 31 0.10 91 68 0.21 92 1 0.00 93 2 0.01 ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29 Consensus pattern (88 bp): GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATATAAATTGAAAAAACAGAATTG AAAATACCTCAACGTGTCCTGAG Found at i:76809645 original size:14 final size:14 Alignment explanation
Indices: 76809626--76809660 Score: 61 Period size: 14 Copynumber: 2.5 Consensus size: 14 76809616 TGATTTTTTT * 76809626 TTGAAAAGCAGAAA 1 TTGAAAAGCAAAAA 76809640 TTGAAAAGCAAAAA 1 TTGAAAAGCAAAAA 76809654 TTGAAAA 1 TTGAAAA 76809661 TACTTCAGCG Statistics Matches: 20, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 14 20 1.00 ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17 Consensus pattern (14 bp): TTGAAAAGCAAAAA Found at i:76809703 original size:179 final size:178 Alignment explanation
Indices: 76809375--76809824 Score: 558 Period size: 179 Copynumber: 2.5 Consensus size: 178 76809365 AACAGACATT * * ** 76809375 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAACCAAGGCTCAACTCACCTCTCGCAATATGAG 1 AAAAACAGAAATTGAAAATACCTCA--ACGTGTACTGAGGCTCAACTCACCTCTCGCAATATGAG * ** * ** 76809440 TTG---GTTTTTGAAA-CTTAATTTGAAAAGAAGATTTTGAAAATACCTCGCCATGTGACCCGAG 64 TTGATTTTTTTTGAAAGCAGAAATTGAAAAGAAGAAATTGAAAATACCTCGCCA-GTGACCCGAG * * * 76809501 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATATAAATTGA 128 ACTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGAAAAATATAAATTGA * 76809553 AAAAACAG-AATTGAAAATACCTCAACGTGTGCTGAGGCTCAACTCACCTCTCGCAATATGAGTT 1 AAAAACAGAAATTGAAAATACCTCAACGTGTACTGAGGCTCAACTCACCTCTCGCAATATGAGTT * 76809617 GATTTTTTTTTGAAAAGCAGAAATTGAAAAGCAA-AAATTGAAAATACTTCAG-C-GTG-CCCTG 66 GA-TTTTTTTTG-AAAGCAGAAATTGAAAAG-AAGAAATTGAAAATACCTC-GCCAGTGACCC-G * * 76809678 AGACTCAACTCACCTCTTGCAATATGAGTTAATTTTTGAAGAATATAAATTGA 126 AGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAATATAAATTGA * * * * 76809731 AAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTT 1 AAAAACAGAAATTGAAAATACCTCAACGTGTACTGAGGCTCAACTCACCTCTCGCAATATGAGTT 76809796 GATTTTTTTTGAAAGACAGAAATTGAAAA 66 GATTTTTTTTGAAAG-CAGAAATTGAAAA 76809825 TACCTCAACG Statistics Matches: 240, Mismatches: 21, Indels: 22 0.85 0.07 0.08 Matches are distributed among these distances: 175 37 0.15 177 19 0.08 178 61 0.25 179 92 0.38 180 3 0.01 181 25 0.10 182 3 0.01 ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28 Consensus pattern (178 bp): AAAAACAGAAATTGAAAATACCTCAACGTGTACTGAGGCTCAACTCACCTCTCGCAATATGAGTT GATTTTTTTTGAAAGCAGAAATTGAAAAGAAGAAATTGAAAATACCTCGCCAGTGACCCGAGACT CAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAATATAAATTGA Found at i:76809866 original size:76 final size:76 Alignment explanation
Indices: 76809735--76809878 Score: 216 Period size: 76 Copynumber: 1.9 Consensus size: 76 76809725 AATTGAAAAA * * 76809735 ACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATT 1 ACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGAAT 76809800 TTTTTTGAAAG 66 TTTTTTGAAAG * * ** * * 76809811 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGAAT 1 ACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGAAT 76809876 TTT 66 TTT 76809879 GAAAACAGGA Statistics Matches: 60, Mismatches: 8, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 76 60 1.00 ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32 Consensus pattern (76 bp): ACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGAAT TTTTTTGAAAG Found at i:76810745 original size:44 final size:40 Alignment explanation
Indices: 76810684--76810776 Score: 98 Period size: 40 Copynumber: 2.2 Consensus size: 40 76810674 CGCCCTCTCA 76810684 AGTTTTCATCCTAATCTTTTGTGTTAATCAAGATGCCCTTTTCG 1 AGTTTTCATCCTAATCTTTT-T-TT--TCAAGATGCCCTTTTCG * * * 76810728 AGTTTTCA-CCTTGATCTTTTTTTTTAGGATGCCCTTTTCG 1 AGTTTTCATCC-TAATCTTTTTTTTCAAGATGCCCTTTTCG * 76810768 GGTTTTCAT 1 AGTTTTCAT 76810777 ATTGATTTTC Statistics Matches: 43, Mismatches: 4, Indels: 7 0.80 0.07 0.13 Matches are distributed among these distances: 40 22 0.51 42 2 0.05 43 3 0.07 44 16 0.37 ACGTcount: A:0.16, C:0.19, G:0.15, T:0.49 Consensus pattern (40 bp): AGTTTTCATCCTAATCTTTTTTTTCAAGATGCCCTTTTCG Found at i:76810773 original size:40 final size:40 Alignment explanation
Indices: 76810715--76810792 Score: 113 Period size: 40 Copynumber: 1.9 Consensus size: 40 76810705 TGTTAATCAA * 76810715 GATGCCCTTTTCGAGTTTTCACCTTGATCTTT-TTTTTTAG 1 GATGCCCTTTTCGAGTTTTCACATTGAT-TTTCTTTTTTAG * * 76810755 GATGCCCTTTTCGGGTTTTCATATTGATTTTCTTTTTT 1 GATGCCCTTTTCGAGTTTTCACATTGATTTTCTTTTTT 76810793 CAAGCATAAT Statistics Matches: 34, Mismatches: 3, Indels: 2 0.87 0.08 0.05 Matches are distributed among these distances: 39 3 0.09 40 31 0.91 ACGTcount: A:0.12, C:0.18, G:0.15, T:0.55 Consensus pattern (40 bp): GATGCCCTTTTCGAGTTTTCACATTGATTTTCTTTTTTAG Found at i:76821247 original size:83 final size:83 Alignment explanation
Indices: 76821108--76821272 Score: 285 Period size: 83 Copynumber: 2.0 Consensus size: 83 76821098 CACGGAGCTG * * * 76821108 GATGAGAAGAATAAGATTCAAGGTGCAAGACCTAGTGGAGTGACATCTAGAGGTAGACCACCGAG 1 GATGAGAAGAATAAGATGCAAGGTGCAAGACCTAGTGGAATGACAGCTAGAGGTAGACCACCGAG * 76821173 AATTTTAGGAGGCAGGGT 66 AATTTCAGGAGGCAGGGT 76821191 GATGAGAAGAATAAGATGCAAGGTGCAAGACCTAGTGGAATGACAGCTAGAGGTAGACCACCGAG 1 GATGAGAAGAATAAGATGCAAGGTGCAAGACCTAGTGGAATGACAGCTAGAGGTAGACCACCGAG * 76821256 AATTTCAGGAGGTAGGG 66 AATTTCAGGAGGCAGGG 76821273 GTGGTAGTCA Statistics Matches: 77, Mismatches: 5, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 83 77 1.00 ACGTcount: A:0.36, C:0.13, G:0.33, T:0.18 Consensus pattern (83 bp): GATGAGAAGAATAAGATGCAAGGTGCAAGACCTAGTGGAATGACAGCTAGAGGTAGACCACCGAG AATTTCAGGAGGCAGGGT Found at i:76824672 original size:70 final size:70 Alignment explanation
Indices: 76824585--76824725 Score: 255 Period size: 70 Copynumber: 2.0 Consensus size: 70 76824575 ATTATTAAAT * 76824585 AGGGATCAACATGAGACATGGTGAAATATGATAGGCTAATTTTAAAGGGCCTATTAGTGCATGTC 1 AGGGATCAACATAAGACATGGTGAAATATGATAGGCTAATTTTAAAGGGCCTATTAGTGCATGTC 76824650 AACAC 66 AACAC * * 76824655 AGGGATCAATATAAGACATGGTGAAATATGATAGGCTAATTTTAAAGGGCTTATTAGTGCATGTC 1 AGGGATCAACATAAGACATGGTGAAATATGATAGGCTAATTTTAAAGGGCCTATTAGTGCATGTC 76824720 AACAC 66 AACAC 76824725 A 1 A 76824726 AGGGTAGACT Statistics Matches: 68, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 70 68 1.00 ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27 Consensus pattern (70 bp): AGGGATCAACATAAGACATGGTGAAATATGATAGGCTAATTTTAAAGGGCCTATTAGTGCATGTC AACAC Found at i:76826404 original size:29 final size:29 Alignment explanation
Indices: 76826369--76826442 Score: 105 Period size: 29 Copynumber: 2.6 Consensus size: 29 76826359 GTTGTGAGAT * * 76826369 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA 1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA * 76826398 TGGCACTAAGTGTGCGAGTTTAAAGTACA 1 TGGCACTAAGTGTGCGAGTTGAAAGTACA 76826427 TGGCACTAAGTGTGCG 1 TGGCACTAAGTGTGCG 76826443 TGGTTGATTA Statistics Matches: 41, Mismatches: 3, Indels: 2 0.89 0.07 0.04 Matches are distributed among these distances: 28 5 0.12 29 36 0.88 ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26 Consensus pattern (29 bp): TGGCACTAAGTGTGCGAGTTGAAAGTACA Found at i:76828156 original size:35 final size:36 Alignment explanation
Indices: 76828092--76828163 Score: 137 Period size: 35 Copynumber: 2.0 Consensus size: 36 76828082 TCTGTAAAAG 76828092 TAAAAAGGGTTTGGCTAGGCTTAAGATATGAATAAA 1 TAAAAAGGGTTTGGCTAGGCTTAAGATATGAATAAA 76828128 TAAAAAGGGTTTGGCTA-GCTTAAGATATGAATAAA 1 TAAAAAGGGTTTGGCTAGGCTTAAGATATGAATAAA 76828163 T 1 T 76828164 TCGATAAAAA Statistics Matches: 36, Mismatches: 0, Indels: 1 0.97 0.00 0.03 Matches are distributed among these distances: 35 19 0.53 36 17 0.47 ACGTcount: A:0.42, C:0.06, G:0.24, T:0.29 Consensus pattern (36 bp): TAAAAAGGGTTTGGCTAGGCTTAAGATATGAATAAA Found at i:76828693 original size:48 final size:46 Alignment explanation
Indices: 76828581--76828744 Score: 163 Period size: 46 Copynumber: 3.5 Consensus size: 46 76828571 TTTGTGTGCT * * 76828581 AGTGTAAGACATGTCTAGGACATGCATCAGCCATAGTATGAGAGCC 1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAGAGTATGAGAGCC * * * 76828627 AGTGTAAGACATGCCTGGGACATGCATCAGCCCCGAGATATTTA-AGCC 1 AGTGTAAGACATGTCTGGGACATGCATCAG-CCAGAG-TA-TGAGAGCC * * * ** * 76828675 AGTGTAAGATATGTCTGGGACATGAATC-GGCATTGAG-GCGAGAGCT 1 AGTGTAAGACATGTCTGGGACATGCATCAGCCA--GAGTATGAGAGCC 76828721 AGTGTAAGACATGTCTGGGACATG 1 AGTGTAAGACATGTCTGGGACATG 76828745 GCGTCAGCTT Statistics Matches: 97, Mismatches: 15, Indels: 12 0.78 0.12 0.10 Matches are distributed among these distances: 45 1 0.01 46 55 0.57 47 5 0.05 48 34 0.35 49 2 0.02 ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23 Consensus pattern (46 bp): AGTGTAAGACATGTCTGGGACATGCATCAGCCAGAGTATGAGAGCC Found at i:76831403 original size:17 final size:16 Alignment explanation
Indices: 76831375--76831427 Score: 97 Period size: 16 Copynumber: 3.2 Consensus size: 16 76831365 TTTGGTTCGC 76831375 TGTATTGGATTAGAGG 1 TGTATTGGATTAGAGG 76831391 TGTATTGGGATTAGAGG 1 TGTATT-GGATTAGAGG 76831408 TGTATTGGATTAGAGG 1 TGTATTGGATTAGAGG 76831424 TGTA 1 TGTA 76831428 ATAGCTAATC Statistics Matches: 36, Mismatches: 0, Indels: 2 0.95 0.00 0.05 Matches are distributed among these distances: 16 20 0.56 17 16 0.44 ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38 Consensus pattern (16 bp): TGTATTGGATTAGAGG Found at i:76831492 original size:44 final size:45 Alignment explanation
Indices: 76831408--76831498 Score: 121 Period size: 45 Copynumber: 2.0 Consensus size: 45 76831398 GGATTAGAGG * * * 76831408 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA 1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA *** 76831453 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA 1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA 76831497 TG 1 TG 76831499 GAATAGAGGT Statistics Matches: 40, Mismatches: 6, Indels: 1 0.85 0.13 0.02 Matches are distributed among these distances: 44 19 0.47 45 21 0.52 ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37 Consensus pattern (45 bp): TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA Found at i:76833307 original size:104 final size:104 Alignment explanation
Indices: 76833171--76834016 Score: 1451 Period size: 104 Copynumber: 8.1 Consensus size: 104 76833161 ATCAGGCACC * * * * * * * * * 76833171 AACCACTAAGTTAAATACTCGAGTTTATGCGAAAATTA-CAGATCAAAAACAAACTCCTGCTACA 1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGA-ATCAAAATCAAACTCATTCTACA * * * 76833235 ATGTAAGAGCTTTGATTAATTATTTACATAAAAATCTTGA 65 ATGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA * 76833275 AACCTCTAAGTTAAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA 1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA * * * 76833340 TGTAAGAGCTTTGATTCCTTGTTTACATGAAAATCTTGA 66 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA * * 76833379 AACCTCTAAGTTAAATATTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA 1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA 76833444 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA 66 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA 76833483 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA 1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA 76833548 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA 66 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA 76833587 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA 1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA 76833652 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA 66 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA 76833691 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA 1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA * 76833756 TGTAAGAGCTTTGATTCATTATTTACATGAAAATTTTTA 66 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA 76833795 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA 1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA * 76833860 TGTAAGAGCTTTGATTCATTATTTACATGAAAATTTTTA 66 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA 76833899 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA 1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA * * * 76833964 TGTAAGAGCTTTGATTCATTACTTACAAGAAAATCTTGA 66 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA * * 76834003 AGCCTCTAAATTTA 1 AACCTCTAAGTTTA 76834017 CAACACATTG Statistics Matches: 716, Mismatches: 25, Indels: 2 0.96 0.03 0.00 Matches are distributed among these distances: 104 715 1.00 105 1 0.00 ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33 Consensus pattern (104 bp): AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA Found at i:76835399 original size:12 final size:12 Alignment explanation
Indices: 76835382--76835423 Score: 50 Period size: 12 Copynumber: 3.4 Consensus size: 12 76835372 AATTTTTCTC 76835382 CCCTTT-CCTCTT 1 CCCTTTACC-CTT 76835394 CCCTTTACCCTT 1 CCCTTTACCCTT * 76835406 CCCTTTGCCCTTT 1 CCCTTTACCC-TT 76835419 CCCTT 1 CCCTT 76835424 GGGTTGCAAA Statistics Matches: 27, Mismatches: 1, Indels: 3 0.87 0.03 0.10 Matches are distributed among these distances: 12 18 0.67 13 9 0.33 ACGTcount: A:0.02, C:0.50, G:0.02, T:0.45 Consensus pattern (12 bp): CCCTTTACCCTT Found at i:76845672 original size:39 final size:40 Alignment explanation
Indices: 76845577--76845760 Score: 177 Period size: 40 Copynumber: 4.7 Consensus size: 40 76845567 TTGGATGATG * * 76845577 TCCGGGCTAAGTCCCAAAGGC--TTGTGCTA-AGTGAC-AAT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT * * 76845615 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGATACTAAT 1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT * * 76845656 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT * 76845695 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT * * 76845734 AACCGGGCTATGTCCCGAAGGCATTTG 1 -TCCGGGCTAAGTCCCGAAGGCATTTG 76845761 AACGAGGAGC Statistics Matches: 122, Mismatches: 14, Indels: 17 0.80 0.09 0.11 Matches are distributed among these distances: 39 52 0.43 40 59 0.48 41 10 0.08 42 1 0.01 ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24 Consensus pattern (40 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT Found at i:76845782 original size:79 final size:79 Alignment explanation
Indices: 76845629--76845793 Score: 185 Period size: 79 Copynumber: 2.1 Consensus size: 79 76845619 GGACTAAGAT * ** * 76845629 CCGAAGGCATTCGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA 1 CCGAAGGCATTCGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA * 76845694 ATCCGGGTTAAGTC 66 ATCCGGGTTAAATC * * 76845708 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG 1 CCGAAGGCATTCGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA- * * 76845770 CTATATCC-GGTTAAATT 62 CTAAATCCGGGTTAAATC 76845787 CCGAAGG 1 CCGAAGG 76845794 TACGTGATTT Statistics Matches: 73, Mismatches: 9, Indels: 8 0.81 0.10 0.09 Matches are distributed among these distances: 78 3 0.04 79 45 0.62 80 25 0.34 ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24 Consensus pattern (79 bp): CCGAAGGCATTCGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA ATCCGGGTTAAATC Found at i:76854186 original size:17 final size:18 Alignment explanation
Indices: 76854159--76854192 Score: 52 Period size: 17 Copynumber: 1.9 Consensus size: 18 76854149 AATTAAATAT 76854159 ATGCATATTAAATTATTA 1 ATGCATATTAAATTATTA * 76854177 ATGC-TATTAATTTATT 1 ATGCATATTAAATTATT 76854193 TAAACAAAAT Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 17 11 0.73 18 4 0.27 ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50 Consensus pattern (18 bp): ATGCATATTAAATTATTA Found at i:76865318 original size:14 final size:16 Alignment explanation
Indices: 76865299--76865331 Score: 52 Period size: 14 Copynumber: 2.2 Consensus size: 16 76865289 GGCGGGGTTG 76865299 TTAGTT-GTTCT-AAA 1 TTAGTTGGTTCTGAAA 76865313 TTAGTTGGTTCTGAAA 1 TTAGTTGGTTCTGAAA 76865329 TTA 1 TTA 76865332 CCTTGTCGGG Statistics Matches: 17, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 14 6 0.35 15 5 0.29 16 6 0.35 ACGTcount: A:0.27, C:0.06, G:0.18, T:0.48 Consensus pattern (16 bp): TTAGTTGGTTCTGAAA Found at i:76874226 original size:45 final size:45 Alignment explanation
Indices: 76874162--76874262 Score: 150 Period size: 45 Copynumber: 2.2 Consensus size: 45 76874152 TGCATTACGA * * 76874162 TTGAAGTCATTCCCATATTC-CTTGAGGGACAAAGCTTGAGCCTGG 1 TTGAAGTCATTCCCATATTCGC-TAAGGGACAAAGCTCGAGCCTGG * 76874207 TTGAAGTCATTCCCATATTCGCTAAGGGACAGAGCTCGAGCCTGG 1 TTGAAGTCATTCCCATATTCGCTAAGGGACAAAGCTCGAGCCTGG * 76874252 TTGAACTCATT 1 TTGAAGTCATT 76874263 GCCACCGAAC Statistics Matches: 51, Mismatches: 4, Indels: 2 0.89 0.07 0.04 Matches are distributed among these distances: 45 50 0.98 46 1 0.02 ACGTcount: A:0.25, C:0.23, G:0.24, T:0.29 Consensus pattern (45 bp): TTGAAGTCATTCCCATATTCGCTAAGGGACAAAGCTCGAGCCTGG Found at i:76879994 original size:29 final size:29 Alignment explanation
Indices: 76879960--76880033 Score: 96 Period size: 29 Copynumber: 2.6 Consensus size: 29 76879950 TAATCAACCG * 76879960 CGCACACTTAGTGCCATGTACTTT-AAACT 1 CGCACACTTAGTGCCATGCA-TTTCAAACT ** 76879989 CGCACACTTAGTGCCATGCATTTCAAGTT 1 CGCACACTTAGTGCCATGCATTTCAAACT * 76880018 CGCACACCTAGTGCCA 1 CGCACACTTAGTGCCA 76880034 ATCTCACAAC Statistics Matches: 40, Mismatches: 4, Indels: 2 0.87 0.09 0.04 Matches are distributed among these distances: 28 3 0.08 29 37 0.93 ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27 Consensus pattern (29 bp): CGCACACTTAGTGCCATGCATTTCAAACT Found at i:76889776 original size:29 final size:29 Alignment explanation
Indices: 76889742--76889815 Score: 96 Period size: 29 Copynumber: 2.6 Consensus size: 29 76889732 TAATCAACCG * 76889742 CGCACACTTAGTGCCATGTACTTT-AAACT 1 CGCACACTTAGTGCCATGCA-TTTCAAACT ** 76889771 CGCACACTTAGTGCCATGCATTTCAAGTT 1 CGCACACTTAGTGCCATGCATTTCAAACT * 76889800 CGCACACCTAGTGCCA 1 CGCACACTTAGTGCCA 76889816 ATCTCACAAC Statistics Matches: 40, Mismatches: 4, Indels: 2 0.87 0.09 0.04 Matches are distributed among these distances: 28 3 0.08 29 37 0.93 ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27 Consensus pattern (29 bp): CGCACACTTAGTGCCATGCATTTCAAACT Found at i:76898798 original size:30 final size:30 Alignment explanation
Indices: 76898764--76898824 Score: 77 Period size: 30 Copynumber: 2.0 Consensus size: 30 76898754 TCCTTAACTC 76898764 AAACTTTGGAAAAATTACAATTTTGCCCCT 1 AAACTTTGGAAAAATTACAATTTTGCCCCT * * * * * 76898794 AAACTTTTGCATATTTACACTTTTGCCCCT 1 AAACTTTGGAAAAATTACAATTTTGCCCCT 76898824 A 1 A 76898825 GGCTCGGGAA Statistics Matches: 26, Mismatches: 5, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 30 26 1.00 ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38 Consensus pattern (30 bp): AAACTTTGGAAAAATTACAATTTTGCCCCT Found at i:76899899 original size:25 final size:24 Alignment explanation
Indices: 76899865--76899921 Score: 71 Period size: 25 Copynumber: 2.3 Consensus size: 24 76899855 ATCTCTTCCC * 76899865 AAAATCACATCAAATTCAT-CAAAT 1 AAAATAACATCAAA-TCATCCAAAT 76899889 GAAAATAACATCAAATCATCCAAAT 1 -AAAATAACATCAAATCATCCAAAT 76899914 AATAATAA 1 AA-AATAA 76899922 TCTTTTACCA Statistics Matches: 29, Mismatches: 1, Indels: 4 0.85 0.03 0.12 Matches are distributed among these distances: 24 6 0.21 25 23 0.79 ACGTcount: A:0.58, C:0.18, G:0.02, T:0.23 Consensus pattern (24 bp): AAAATAACATCAAATCATCCAAAT Found at i:76903746 original size:12 final size:12 Alignment explanation
Indices: 76903729--76903753 Score: 50 Period size: 12 Copynumber: 2.1 Consensus size: 12 76903719 ATGTAAGTGA 76903729 TCTTGATGATTT 1 TCTTGATGATTT 76903741 TCTTGATGATTT 1 TCTTGATGATTT 76903753 T 1 T 76903754 TACATTTTTA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60 Consensus pattern (12 bp): TCTTGATGATTT Found at i:76904557 original size:46 final size:46 Alignment explanation
Indices: 76904445--76904669 Score: 197 Period size: 46 Copynumber: 4.8 Consensus size: 46 76904435 CGTAATTTGT * * 76904445 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCTACATTGAGACG 1 GTGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGACATCGAGACG * * * * 76904492 AGTGCCAATGTAAG-GCATGTCTGGGACATGCATCGACCTCGGGACG 1 -GTGCCAGTGTAAGACCATGTCTGGGACATGCATCGACATCGAGACG * * * * 76904538 TTAGCCAGTGTAAGA-CATGTCTAGGACATGCATCGGCCTCGAGAC- 1 GT-GCCAGTGTAAGACCATGTCTGGGACATGCATCGACATCGAGACG * * * * 76904583 ATGTCAGGGTAAGACCATGTCTGGGACATGGGATCAGCACATC-AGTACGG 1 GTGCCAGTGTAAGACCATGTCTGGGACAT-GCATC-G-ACATCGAG-AC-G * * 76904633 GAGCTAGTGTAAGACCATGTCTGGGACATTGCATCGA 1 GTGCCAGTGTAAGACCATGTCTGGGACA-TGCATCGA 76904670 AAACTTAACC Statistics Matches: 143, Mismatches: 24, Indels: 20 0.76 0.13 0.11 Matches are distributed among these distances: 44 10 0.07 45 15 0.10 46 54 0.38 47 17 0.12 48 18 0.13 49 1 0.01 50 27 0.19 51 1 0.01 ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22 Consensus pattern (46 bp): GTGCCAGTGTAAGACCATGTCTGGGACATGCATCGACATCGAGACG Found at i:76911213 original size:12 final size:12 Alignment explanation
Indices: 76911196--76911220 Score: 50 Period size: 12 Copynumber: 2.1 Consensus size: 12 76911186 ATGTAAGTGA 76911196 TCTTGATGATTT 1 TCTTGATGATTT 76911208 TCTTGATGATTT 1 TCTTGATGATTT 76911220 T 1 T 76911221 TACATTTTTG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60 Consensus pattern (12 bp): TCTTGATGATTT Found at i:76912045 original size:46 final size:45 Alignment explanation
Indices: 76911935--76912152 Score: 183 Period size: 46 Copynumber: 4.6 Consensus size: 45 76911925 AGTAATTTGT * * 76911935 GTGCCAGTGTAAGACCATGTCTGGGACATGGCAACGGCATTGAGACAA 1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGA-AA * 76911983 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG-AA 1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGAAA * * 76912027 GTAAGCCAGTGTAAGACATGTCTAGGACATGCATCGGC-TACGAGACA 1 GT--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGAAA ** * * * 76912074 -TGTTAGTGCAAGACCATTTCTGGGACATGGCATCAGCA-CGTAAGTACAA 1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCG--AG-A-AA * * 76912123 GAGCTAGTGTAAGACCATGTCTGGGACATG 1 GTGCCAGTGTAAGA-CATGTCTGGGACATG 76912153 GAATCAGCAC Statistics Matches: 142, Mismatches: 16, Indels: 23 0.78 0.09 0.13 Matches are distributed among these distances: 44 13 0.09 45 15 0.11 46 56 0.39 47 17 0.12 48 15 0.11 49 2 0.01 50 24 0.17 ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21 Consensus pattern (45 bp): GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGAAA Found at i:76912137 original size:50 final size:50 Alignment explanation
Indices: 76912077--76912207 Score: 199 Period size: 50 Copynumber: 2.6 Consensus size: 50 76912067 CGAGACATGT * * * * 76912077 TAGTGCAAGACCATTTCTGGGACATGGCATCAGCACGTAAGTACAAGAGC 1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATAAATACAAGAGC * * 76912127 TAGTGTAAGACCATGTCTGGGACATGGAATCAGCACATAAATACGAGAGC 1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATAAATACAAGAGC * 76912177 TAGTGTAAGACCATGTCTGGGACATTGCATC 1 TAGTGTAAGACCATGTCTGGGACATGGCATC 76912208 GGCAACTTAA Statistics Matches: 73, Mismatches: 8, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 50 73 1.00 ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22 Consensus pattern (50 bp): TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATAAATACAAGAGC Found at i:76918269 original size:40 final size:40 Alignment explanation
Indices: 76918171--76918433 Score: 309 Period size: 40 Copynumber: 6.6 Consensus size: 40 76918161 TCCTCGTTCA * * * ** * 76918171 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC- 1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG * 76918210 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG 1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG 76918250 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG 1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG 76918290 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG 1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG ** * * 76918330 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA 1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG * * * * * 76918370 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC- 1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG * * 76918410 AAAGCCTTCGGGACTTAGCCCGGA 1 AATGCCTTCGGGACTTAACCCGGA 76918434 CAGCATTCAA Statistics Matches: 199, Mismatches: 20, Indels: 9 0.87 0.09 0.04 Matches are distributed among these distances: 39 37 0.19 40 154 0.77 41 8 0.04 ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24 Consensus pattern (40 bp): AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG Found at i:76926219 original size:40 final size:40 Alignment explanation
Indices: 76926121--76926423 Score: 344 Period size: 40 Copynumber: 7.6 Consensus size: 40 76926111 TCCTCGTTCA * * * * * 76926121 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC- 1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG * * 76926160 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG 1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG 76926200 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG 1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG 76926240 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG 1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG * * * 76926280 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA 1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG * * * * * 76926320 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA 1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG ** * * * * 76926360 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC- 1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG * * 76926400 AAAGCCTTCGGGACTTAGCCCGGA 1 AATGCCTTCGGGACTTAACCCGGA 76926424 CAGCATTCAA Statistics Matches: 235, Mismatches: 23, Indels: 11 0.87 0.09 0.04 Matches are distributed among these distances: 39 39 0.17 40 184 0.78 41 12 0.05 ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25 Consensus pattern (40 bp): AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG Found at i:76926432 original size:41 final size:41 Alignment explanation
Indices: 76926355--76926432 Score: 97 Period size: 40 Copynumber: 1.9 Consensus size: 41 76926345 TTTGTATCTC * * * 76926355 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA 1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA 76926396 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA 1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA 76926433 ATTAATCATG Statistics Matches: 32, Mismatches: 3, Indels: 4 0.82 0.08 0.10 Matches are distributed among these distances: 40 17 0.53 41 15 0.47 ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24 Consensus pattern (41 bp): GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA Found at i:76939152 original size:27 final size:27 Alignment explanation
Indices: 76939117--76939170 Score: 72 Period size: 27 Copynumber: 2.0 Consensus size: 27 76939107 TGTTATGTGA * * 76939117 AATTGAATGGCAAATTATTGTTACATG 1 AATTGAATGGCAAATTACTATTACATG ** 76939144 AATTGAATGTTAAATTACTATTACATG 1 AATTGAATGGCAAATTACTATTACATG 76939171 GGTTGTATGA Statistics Matches: 23, Mismatches: 4, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 27 23 1.00 ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39 Consensus pattern (27 bp): AATTGAATGGCAAATTACTATTACATG Found at i:76939502 original size:49 final size:49 Alignment explanation
Indices: 76939430--76939653 Score: 238 Period size: 49 Copynumber: 4.5 Consensus size: 49 76939420 TGAGGTCTTG * * 76939430 TGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATACTTGGTCGCA 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATACTTGGTCACA * * * * * 76939479 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTTGATCACA 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGAT-AC-TTGGTCACA * * * * 76939530 TGTGTAGTACTAAGTGCAGGCAACTACGTGTATCAACGG-T--TAGGCCACG 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-C--CGGATACTTGGTCACA * * * 76939579 TGTGTAGTACTAAGTGCATGCTACTACGTGTACCGGATAATTGGTCGCA 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATACTTGGTCACA * * 76939628 TATGTAGTACTAAGTGTAGGCTACTA 1 TGTGTAGTACTAAGTGCAGGCTACTA 76939654 TGCATACCAT Statistics Matches: 143, Mismatches: 24, Indels: 16 0.78 0.13 0.09 Matches are distributed among these distances: 46 3 0.02 47 1 0.01 48 1 0.01 49 96 0.67 50 2 0.01 51 36 0.25 52 1 0.01 53 1 0.01 54 2 0.01 ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29 Consensus pattern (49 bp): TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATACTTGGTCACA Found at i:76939703 original size:149 final size:149 Alignment explanation
Indices: 76939429--76939704 Score: 369 Period size: 149 Copynumber: 1.9 Consensus size: 149 76939419 GTGAGGTCTT * * 76939429 GTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATACTTGGTCGCATGTGTAGTACTAAGT 1 GTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATATGTAGTACTAAGT * * * * * * * 76939494 GCAGGCTACTATGCGTACCCGTTAACTTTGATCACATGTGTAGTACTAAGTGCAGGCAACTACGT 66 GCAGGCTACTATGCATACCCATTAACTTGGATCACAAGTGTAGAAATAAGTGCAGACAACTACGT 76939559 GTATCAACGGTTAGGCCAC 131 GTATCAACGGTTAGGCCAC * * 76939578 GTGTGTAGTACTAAGTGCATGCTACTACGTGTACCGGATAATTGGTCGCATATGTAGTACTAAGT 1 GTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATATGTAGTACTAAGT * * * * 76939643 GTAGGCTACTATGCATA-CCATATAGCATTGGCT-ACAAGTGT-GAAAATATGTGCAGACAACTA 66 GCAGGCTACTATGCATACCCAT-TAAC-TTGGATCACAAGTGTAG-AAATAAGTGCAGACAACTA 76939705 AGTATCAGTT Statistics Matches: 109, Mismatches: 15, Indels: 6 0.84 0.12 0.05 Matches are distributed among these distances: 148 4 0.04 149 101 0.93 150 4 0.04 ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28 Consensus pattern (149 bp): GTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATATGTAGTACTAAGT GCAGGCTACTATGCATACCCATTAACTTGGATCACAAGTGTAGAAATAAGTGCAGACAACTACGT GTATCAACGGTTAGGCCAC Found at i:76942817 original size:15 final size:15 Alignment explanation
Indices: 76942797--76942848 Score: 61 Period size: 15 Copynumber: 3.5 Consensus size: 15 76942787 ATATCTTAGG 76942797 TTTCTTTATTTTGGA 1 TTTCTTTATTTTGGA * * 76942812 TTTCTTTATTCTGGG 1 TTTCTTTATTTTGGA * * 76942827 TTTCTGTATCTTGGA 1 TTTCTTTATTTTGGA 76942842 TTT-TTTA 1 TTTCTTTA 76942849 ACTCGGTTTT Statistics Matches: 30, Mismatches: 7, Indels: 1 0.79 0.18 0.03 Matches are distributed among these distances: 14 3 0.10 15 27 0.90 ACGTcount: A:0.12, C:0.10, G:0.15, T:0.63 Consensus pattern (15 bp): TTTCTTTATTTTGGA Found at i:76948882 original size:49 final size:50 Alignment explanation
Indices: 76948810--76949034 Score: 197 Period size: 49 Copynumber: 4.5 Consensus size: 50 76948800 TGAGGTCACG * 76948810 TGTGTAGTACTAATTGCAGGCTACTACGTGTACCGGATACTT-GGTCGTA 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATACTTAGGTCGTA ** * * * ** 76948859 TGTGTAGTACTAAAAGCAGGCTACTATGCGTACCCGATAACTTCGAGCACG-- 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGAT-ACTT--AGGTCGTA * * * * *** * * 76948910 TGTGTAGTACTAAGTGCAGGCTATTATGTGTATCAGACGGTTAGGTCATG 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATACTTAGGTCGTA * * * * * 76948960 TGTTTAGTACTAAGTGTAGGCTACTACGTGTACCGAATAATT-GGTCGCA 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATACTTAGGTCGTA 76949009 TGTGTAGTACTAAGTGCAGGCTACTA 1 TGTGTAGTACTAAGTGCAGGCTACTA 76949035 TGCGTACCAG Statistics Matches: 136, Mismatches: 34, Indels: 12 0.75 0.19 0.07 Matches are distributed among these distances: 48 3 0.02 49 61 0.45 50 38 0.28 51 31 0.23 53 3 0.02 ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31 Consensus pattern (50 bp): TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATACTTAGGTCGTA Found at i:76957184 original size:33 final size:33 Alignment explanation
Indices: 76957128--76957193 Score: 96 Period size: 33 Copynumber: 2.0 Consensus size: 33 76957118 GTTTCAATTG * * ** 76957128 GGATTTAGCCTGGACTGGTAATCCTTATTGACT 1 GGATTTAGCCTGGACTAGCAATCCAGATTGACT 76957161 GGATTTAGCCTGGACTAGCAATCCAGATTGACT 1 GGATTTAGCCTGGACTAGCAATCCAGATTGACT 76957194 CAAAAGGGAA Statistics Matches: 29, Mismatches: 4, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 33 29 1.00 ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32 Consensus pattern (33 bp): GGATTTAGCCTGGACTAGCAATCCAGATTGACT Found at i:76962282 original size:87 final size:87 Alignment explanation
Indices: 76962136--76962326 Score: 373 Period size: 87 Copynumber: 2.2 Consensus size: 87 76962126 CACCACAAAA * 76962136 ATTGCAACGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGACATAT 1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGACATAT 76962201 ATATATGTGGCGAAGCCATCAG 66 ATATATGTGGCGAAGCCATCAG 76962223 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGACATAT 1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGACATAT 76962288 ATATATGTGGCGAAGCCATCAG 66 ATATATGTGGCGAAGCCATCAG 76962310 ATTGCAGCGAGGCTGCC 1 ATTGCAGCGAGGCTGCC 76962327 TTGAACCTTG Statistics Matches: 103, Mismatches: 1, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 87 103 1.00 ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25 Consensus pattern (87 bp): ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGACATAT ATATATGTGGCGAAGCCATCAG Found at i:76966686 original size:99 final size:99 Alignment explanation
Indices: 76966512--76966708 Score: 367 Period size: 99 Copynumber: 2.0 Consensus size: 99 76966502 CCATAGAGAC 76966512 ACACTTGGTCTAATAAAGCCTCTATCCAATAACTCTTGAATTTGGGCTTTCAGCTCCACCAACTC 1 ACACTTGGTCTAATAAAGCCTCTATCCAATAACTCTTGAATTTGGGCTTTCAGCTCCACCAACTC * 76966577 CTTCGGTGCCATCCTATAGGGTGCAATGGACACT 66 CTTCGGTGCCATCCTATAAGGTGCAATGGACACT * 76966611 ACACTTGGTCTAATAAAGCCTCTATCCAATAACTCTTGAATTTGGGCTTTTAGCTCCACCAACTC 1 ACACTTGGTCTAATAAAGCCTCTATCCAATAACTCTTGAATTTGGGCTTTCAGCTCCACCAACTC * 76966676 CTTCGTTGCCATCCTATAAGGTGCAATGGACAC 66 CTTCGGTGCCATCCTATAAGGTGCAATGGACAC 76966709 CGGTGCCATT Statistics Matches: 95, Mismatches: 3, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 99 95 1.00 ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30 Consensus pattern (99 bp): ACACTTGGTCTAATAAAGCCTCTATCCAATAACTCTTGAATTTGGGCTTTCAGCTCCACCAACTC CTTCGGTGCCATCCTATAAGGTGCAATGGACACT Found at i:76976179 original size:16 final size:16 Alignment explanation
Indices: 76976108--76976170 Score: 83 Period size: 16 Copynumber: 3.9 Consensus size: 16 76976098 CGTTTGGTTC * 76976108 ACTGGAATGGAATATG- 1 ACTGTAATGGAATA-GA 76976124 ACTGTAATGGAATAGA 1 ACTGTAATGGAATAGA * 76976140 ACTATAATGGAATAGA 1 ACTGTAATGGAATAGA * 76976156 GCTGTAATGGAATAG 1 ACTGTAATGGAATAG 76976171 GGCTGTAATC Statistics Matches: 42, Mismatches: 4, Indels: 2 0.88 0.08 0.04 Matches are distributed among these distances: 15 1 0.02 16 41 0.98 ACGTcount: A:0.41, C:0.06, G:0.27, T:0.25 Consensus pattern (16 bp): ACTGTAATGGAATAGA Found at i:76979834 original size:48 final size:48 Alignment explanation
Indices: 76979779--76979875 Score: 194 Period size: 48 Copynumber: 2.0 Consensus size: 48 76979769 AGGCAATTTT 76979779 ACTGCATAGGCTTGTAATGGAATAAGCCTGTAATAGGGCATTCCATTC 1 ACTGCATAGGCTTGTAATGGAATAAGCCTGTAATAGGGCATTCCATTC 76979827 ACTGCATAGGCTTGTAATGGAATAAGCCTGTAATAGGGCATTCCATTC 1 ACTGCATAGGCTTGTAATGGAATAAGCCTGTAATAGGGCATTCCATTC 76979875 A 1 A 76979876 ACCAAACAGA Statistics Matches: 49, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 48 49 1.00 ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29 Consensus pattern (48 bp): ACTGCATAGGCTTGTAATGGAATAAGCCTGTAATAGGGCATTCCATTC Found at i:76986073 original size:27 final size:27 Alignment explanation
Indices: 76986043--76986220 Score: 205 Period size: 27 Copynumber: 6.6 Consensus size: 27 76986033 ATATTGAGCC * * * * 76986043 CGCACACTCAGTGCTATATAATCAACT 1 CGCACACTTAGTGCTACATAGTCAAAT * * 76986070 CGCACACTTAGTGCTACGTAATCAAAT 1 CGCACACTTAGTGCTACATAGTCAAAT 76986097 CGCACACTTAGTGCTACATAGTCAAACT 1 CGCACACTTAGTGCTACATAGTCAAA-T ** * * 76986125 CGCACACTTAGTGCCGCATGGTCAATT 1 CGCACACTTAGTGCTACATAGTCAAAT * ** 76986152 CGCACACTTAGTGC-ATCATATTCATTT 1 CGCACACTTAGTGCTA-CATAGTCAAAT * 76986179 CGCACACTTAGTGCAACATAGTCAAAT 1 CGCACACTTAGTGCTACATAGTCAAAT 76986206 CGCACACTTAGTGCT 1 CGCACACTTAGTGCT 76986221 GTACAATTTA Statistics Matches: 130, Mismatches: 18, Indels: 6 0.84 0.12 0.04 Matches are distributed among these distances: 27 106 0.82 28 24 0.18 ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27 Consensus pattern (27 bp): CGCACACTTAGTGCTACATAGTCAAAT Found at i:76986182 original size:82 final size:81 Alignment explanation
Indices: 76986064--76986219 Score: 233 Period size: 82 Copynumber: 1.9 Consensus size: 81 76986054 TGCTATATAA * * 76986064 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA 1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA 76986129 CACTTAGTGCCGCATGG 65 CACTTAGTGCCGCATGG * * ** 76986146 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA 1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA 76986210 CACTTAGTGC 65 CACTTAGTGC 76986220 TGTACAATTT Statistics Matches: 67, Mismatches: 6, Indels: 3 0.88 0.08 0.04 Matches are distributed among these distances: 81 16 0.24 82 51 0.76 ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27 Consensus pattern (81 bp): TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC ACTTAGTGCCGCATGG Found at i:76986791 original size:13 final size:13 Alignment explanation
Indices: 76986773--76986797 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 76986763 TACTAAATTT 76986773 TCATGGATTCAAG 1 TCATGGATTCAAG 76986786 TCATGGATTCAA 1 TCATGGATTCAA 76986798 TATACCATTA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32 Consensus pattern (13 bp): TCATGGATTCAAG Found at i:76995930 original size:46 final size:46 Alignment explanation
Indices: 76995880--76996054 Score: 314 Period size: 46 Copynumber: 3.8 Consensus size: 46 76995870 TGGTTGAGCA 76995880 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG 76995926 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG * 76995972 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG * * * 76996018 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG 76996055 GCGGGTTACA Statistics Matches: 125, Mismatches: 4, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 46 125 1.00 ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30 Consensus pattern (46 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG Found at i:76996906 original size:42 final size:42 Alignment explanation
Indices: 76996836--76997002 Score: 199 Period size: 42 Copynumber: 4.0 Consensus size: 42 76996826 AAAAATATTT ** * * 76996836 GAGATAGCTTCGGCTATTAATTGACACTTAGTGTGCAAGATC 1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC * * * 76996878 GGGATAGCTTCGGCTATGCATTGGCACTTAATGTTCGAGATC 1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC * * * * 76996920 AAGATAGCTTCGACTATGCATTGGCACTTAGTGTGCGTGATT 1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC * * * * 76996962 GAGTTAGCTTCGGCTATGTATTGGAACTTAGTGTGTGAGAT 1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGAT 76997003 TCCTGAGTAA Statistics Matches: 104, Mismatches: 21, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 42 104 1.00 ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33 Consensus pattern (42 bp): GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC Found at i:76997104 original size:32 final size:31 Alignment explanation
Indices: 76997061--76997131 Score: 115 Period size: 32 Copynumber: 2.3 Consensus size: 31 76997051 ATGTGATTGA * 76997061 GTATGAGATTGGTACGAGATGGTACAGGTAT 1 GTATGAAATTGGTACGAGATGGTACAGGTAT * 76997092 GTATAGAAATTGGTAGGAGATGGTACAGGTAT 1 GTAT-GAAATTGGTACGAGATGGTACAGGTAT 76997124 GTATGAAA 1 GTATGAAA 76997132 ATTCAATTGA Statistics Matches: 37, Mismatches: 2, Indels: 2 0.90 0.05 0.05 Matches are distributed among these distances: 31 8 0.22 32 29 0.78 ACGTcount: A:0.34, C:0.04, G:0.34, T:0.28 Consensus pattern (31 bp): GTATGAAATTGGTACGAGATGGTACAGGTAT Found at i:76998488 original size:26 final size:26 Alignment explanation
Indices: 76998405--76998559 Score: 202 Period size: 27 Copynumber: 5.8 Consensus size: 26 76998395 AGTGGAGATG * * 76998405 TTGTAGAATTACCAAAATACCCCTATT 1 TTGTAAAATTACCAAAATA-CCCTAGT 76998432 TTGTAAAATTACCAAAATACCCCTAGT 1 TTGTAAAATTACCAAAATA-CCCTAGT 76998459 TTGTAAAATTACCAAAATACCCTAGT 1 TTGTAAAATTACCAAAATACCCTAGT * 76998485 TTGTAAAATTACCAAAATACCCTAAT 1 TTGTAAAATTACCAAAATACCCTAGT * ** * * 76998511 TTGTGAAATTACTGAAATACCCTCGAC 1 TTGTAAAATTACCAAAATACCCTAG-T * 76998538 TTGTAAAATTACCAAAGTACCC 1 TTGTAAAATTACCAAAATACCC 76998560 CCGATTTACA Statistics Matches: 114, Mismatches: 13, Indels: 2 0.88 0.10 0.02 Matches are distributed among these distances: 26 52 0.46 27 62 0.54 ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30 Consensus pattern (26 bp): TTGTAAAATTACCAAAATACCCTAGT Found at i:76998499 original size:53 final size:53 Alignment explanation
Indices: 76998405--76998560 Score: 206 Period size: 53 Copynumber: 2.9 Consensus size: 53 76998395 AGTGGAGATG * * * 76998405 TTGTAGAATTACCAAAATACCCCTATTTTGTAAAATTACCAAAATACCCCTAGT 1 TTGTAAAATTACCAAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCCTAAT 76998459 TTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATA-CCCTAAT 1 TTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAAT * ** * * * 76998511 TTGTGAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCC 1 TTGTAAAATTACCAAAATACCCTAG-TTTGTAAAATTACCAAAATACCCC 76998561 CGATTTACAG Statistics Matches: 91, Mismatches: 9, Indels: 4 0.88 0.09 0.04 Matches are distributed among these distances: 52 27 0.30 53 43 0.47 54 21 0.23 ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30 Consensus pattern (53 bp): TTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAAT Found at i:77010302 original size:27 final size:27 Alignment explanation
Indices: 77010272--77010429 Score: 210 Period size: 27 Copynumber: 5.9 Consensus size: 27 77010262 AGTGGATAAG * 77010272 TTGTAGAATTACCAAAATACCCCTAGT 1 TTGTAAAATTACCAAAATACCCCTAGT * 77010299 TTGTAAAATTACCAAAATACCCCTGGT 1 TTGTAAAATTACCAAAATACCCCTAGT 77010326 TTGTAAAATTACCAAAATACCCCTAGT 1 TTGTAAAATTACCAAAATACCCCTAGT * * 77010353 TTGTAAAATTACCAAAATATCCCTAAT 1 TTGTAAAATTACCAAAATACCCCTAGT * ** ** 77010380 TTGTGAAATTACTGAAATA-CCCTCAAC 1 TTGTAAAATTACCAAAATACCCCT-AGT * 77010407 TTGTAAAATTACCAAAGTACCCC 1 TTGTAAAATTACCAAAATACCCC 77010430 CGATTTACAG Statistics Matches: 116, Mismatches: 13, Indels: 3 0.88 0.10 0.02 Matches are distributed among these distances: 26 4 0.03 27 109 0.94 28 3 0.03 ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30 Consensus pattern (27 bp): TTGTAAAATTACCAAAATACCCCTAGT Found at i:77010497 original size:27 final size:27 Alignment explanation
Indices: 77010467--77010546 Score: 72 Period size: 27 Copynumber: 3.0 Consensus size: 27 77010457 CGTTTTACAA * 77010467 AATTACCGAAGTACCCTTGTAGGGTAG 1 AATTACCGAAATACCCTTGTAGGGTAG ** 77010494 AATTGTCGAAATATCCC-TGTAGGGTAG 1 AATTACCGAAATA-CCCTTGTAGGGTAG * * ** * 77010521 GACTACCGATTTACCCTTGGAGGGTA 1 AATTACCGAAATACCCTTGTAGGGTA 77010547 AAATGACTAT Statistics Matches: 41, Mismatches: 10, Indels: 4 0.75 0.18 0.07 Matches are distributed among these distances: 26 3 0.07 27 35 0.85 28 3 0.07 ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28 Consensus pattern (27 bp): AATTACCGAAATACCCTTGTAGGGTAG Found at i:77015300 original size:30 final size:29 Alignment explanation
Indices: 77015245--77015321 Score: 84 Period size: 30 Copynumber: 2.6 Consensus size: 29 77015235 TACGAAATAG * * * 77015245 AGATGACATGAAAACCAAGATAAAGAAGTCC 1 AGAT-ACA-GAAATCCAAAATAAAGAAATCC 77015276 A-ATACAAAGAAATCCAAAATAAAGAAATCC 1 AGATAC--AGAAATCCAAAATAAAGAAATCC 77015306 AGATACAGAAATCCAA 1 AGATACAGAAATCCAA 77015322 GATACAATAT Statistics Matches: 40, Mismatches: 3, Indels: 8 0.78 0.06 0.16 Matches are distributed among these distances: 29 12 0.30 30 22 0.55 31 6 0.15 ACGTcount: A:0.57, C:0.17, G:0.13, T:0.13 Consensus pattern (29 bp): AGATACAGAAATCCAAAATAAAGAAATCC Found at i:77015327 original size:15 final size:15 Alignment explanation
Indices: 77015254--77015325 Score: 83 Period size: 15 Copynumber: 4.9 Consensus size: 15 77015244 GAGATGACAT * 77015254 GAAAACCAAGATAAA 1 GAAATCCAAGATAAA * * * 77015269 GAAGTCCAATACAAA 1 GAAATCCAAGATAAA * 77015284 GAAATCCAAAATAAA 1 GAAATCCAAGATAAA * 77015299 GAAATCC-AGATACA 1 GAAATCCAAGATAAA 77015313 GAAATCCAAGATA 1 GAAATCCAAGATA 77015326 CAATATCATA Statistics Matches: 47, Mismatches: 9, Indels: 2 0.81 0.16 0.03 Matches are distributed among these distances: 14 12 0.26 15 35 0.74 ACGTcount: A:0.58, C:0.17, G:0.12, T:0.12 Consensus pattern (15 bp): GAAATCCAAGATAAA Found at i:77017318 original size:17 final size:18 Alignment explanation
Indices: 77017283--77017318 Score: 56 Period size: 18 Copynumber: 2.1 Consensus size: 18 77017273 GGACACAGGG * 77017283 ACACGCCCGTGTGCCTCA 1 ACACCCCCGTGTGCCTCA 77017301 ACACCCCCGTGT-CCTCA 1 ACACCCCCGTGTGCCTCA 77017318 A 1 A 77017319 GCTGTGTAAC Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 17 6 0.35 18 11 0.65 ACGTcount: A:0.19, C:0.47, G:0.17, T:0.17 Consensus pattern (18 bp): ACACCCCCGTGTGCCTCA Found at i:77023701 original size:25 final size:24 Alignment explanation
Indices: 77023667--77023754 Score: 99 Period size: 24 Copynumber: 3.6 Consensus size: 24 77023657 TTTGAAAGTC 77023667 CGCACACATAGTGCTCTTAC-TTAT-T 1 CGCACACATAGTGC-C--ACGTTATCT * 77023692 CGCACACATAGTGCCACGTTTTCT 1 CGCACACATAGTGCCACGTTATCT * * 77023716 CGCACACATAGTGCCATGTAATCT 1 CGCACACATAGTGCCACGTTATCT * 77023740 CGCACACATTGTGCC 1 CGCACACATAGTGCC 77023755 GCATAGCCTT Statistics Matches: 56, Mismatches: 5, Indels: 5 0.85 0.08 0.08 Matches are distributed among these distances: 22 2 0.04 23 3 0.05 24 37 0.66 25 14 0.25 ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28 Consensus pattern (24 bp): CGCACACATAGTGCCACGTTATCT Found at i:77023747 original size:26 final size:24 Alignment explanation
Indices: 77023691--77023777 Score: 93 Period size: 24 Copynumber: 3.6 Consensus size: 24 77023681 TCTTACTTAT ** 77023691 TCGCACACATAGTGCCACGTTTTC 1 TCGCACACATAGTGCCACGTAATC * 77023715 TCGCACACATAGTGCCATGTAATC 1 TCGCACACATAGTGCCACGTAATC * * * ** 77023739 TCGCACACATTGTGCCGCATAGCC 1 TCGCACACATAGTGCCACGTAATC * 77023763 TTGCACACATAGTGC 1 TCGCACACATAGTGC 77023778 TGTATTTTCT Statistics Matches: 52, Mismatches: 11, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 24 52 1.00 ACGTcount: A:0.24, C:0.32, G:0.18, T:0.25 Consensus pattern (24 bp): TCGCACACATAGTGCCACGTAATC Found at i:77025471 original size:194 final size:194 Alignment explanation
Indices: 77025142--77025528 Score: 756 Period size: 194 Copynumber: 2.0 Consensus size: 194 77025132 GGTCCAATAC 77025142 AGTGGTGTGCGGCATTTATGACTGTATAAAGCCTCGTATGGTGCCATCTTGATACTTGATTGGAA 1 AGTGGTGTGCGGCATTTATGACTGTATAAAGCCTCGTATGGTGCCATCTTGATACTTGATTGGAA 77025207 GCTATTGTTGTATGTGAATTCAATCAAAGGTAAATATCGTTCCCACGAACCACTGAACTCGAGAA 66 GCTATTGTTGTATGTGAATTCAATCAAAGGTAAATATCGTTCCCACGAACCACTGAACTCGAGAA * 77025272 TGCAACATCTCAACATATCTTCGAGTATCTGAATAACTCGTTCAGATTGACCATCTGTCTGGGG 131 TGCAACATCTCAACATATCTTCGAGTATCTGAATAACTCATTCAGATTGACCATCTGTCTGGGG 77025336 AGTGGTGTGCGGCATTTATGACTGTATAAAGCCTCGTATGGTGCCATCTTGATACTTGATTGGAA 1 AGTGGTGTGCGGCATTTATGACTGTATAAAGCCTCGTATGGTGCCATCTTGATACTTGATTGGAA 77025401 GCTATTGTTGTATGTGAATTCAATCAAAGGTAAATATCGTTCCCACGAACCACTGAACTCGAGAA 66 GCTATTGTTGTATGTGAATTCAATCAAAGGTAAATATCGTTCCCACGAACCACTGAACTCGAGAA * 77025466 TGCAACATCTCAACATATCTTCGAGTATCTGAATAACTTATTCAGATTGACCATCTGTCTGGG 131 TGCAACATCTCAACATATCTTCGAGTATCTGAATAACTCATTCAGATTGACCATCTGTCTGGG 77025529 ATGGAAAGCA Statistics Matches: 191, Mismatches: 2, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 194 191 1.00 ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31 Consensus pattern (194 bp): AGTGGTGTGCGGCATTTATGACTGTATAAAGCCTCGTATGGTGCCATCTTGATACTTGATTGGAA GCTATTGTTGTATGTGAATTCAATCAAAGGTAAATATCGTTCCCACGAACCACTGAACTCGAGAA TGCAACATCTCAACATATCTTCGAGTATCTGAATAACTCATTCAGATTGACCATCTGTCTGGGG Done.