Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 222 of 290
Found at i:76643156 original size:28 final size:28
Alignment explanation
Indices: 76643111--76643222 Score: 120
Period size: 28 Copynumber: 4.0 Consensus size: 28
76643101 GACTATGTAC
* *
76643111 GGCATTTAGTGTGTGAGATATCGAGTAT
1 GGCACTTAGTGTATGAGATATCGAGTAT
* **
76643139 GACACTTAGTGTATGAGATAGT-GAAAAT
1 GGCACTTAGTGTATGAGATA-TCGAGTAT
76643167 GGCACTTAGTGTGA-GAGATATCGAGTAT
1 GGCACTTAGTGT-ATGAGATATCGAGTAT
** *
76643195 GGCACTTAGTGTGCGAGATATTGAGTAT
1 GGCACTTAGTGTATGAGATATCGAGTAT
76643223 TCAACTGCAT
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
27 1 0.01
28 67 0.96
29 2 0.03
ACGTcount: A:0.29, C:0.09, G:0.30, T:0.31
Consensus pattern (28 bp):
GGCACTTAGTGTATGAGATATCGAGTAT
Found at i:76647171 original size:28 final size:28
Alignment explanation
Indices: 76647122--76647205 Score: 105
Period size: 28 Copynumber: 3.0 Consensus size: 28
76647112 ATGTCCTAAA
*
76647122 ATTACATAAATAGCTACTTTTCAGATAAC
1 ATTACAT-AATAGCTACTTTTCAGAGAAC
* * *
76647151 ATTACATAATTGCTATTTTTCATAGAAC
1 ATTACATAATAGCTACTTTTCAGAGAAC
* *
76647179 ATTACATAATAGTTACTTATCAGAGAA
1 ATTACATAATAGCTACTTTTCAGAGAA
76647206 TATATTCTCT
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 39 0.85
29 7 0.15
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.37
Consensus pattern (28 bp):
ATTACATAATAGCTACTTTTCAGAGAAC
Found at i:76647278 original size:23 final size:23
Alignment explanation
Indices: 76647247--76647312 Score: 89
Period size: 23 Copynumber: 2.9 Consensus size: 23
76647237 AACTTTTTTT
*
76647247 TAGAGAATATTCACTGTTCATGGC
1 TAGAGAATATTTACTGTTCAT-GC
*
76647271 -AGAGAATATTTAATGTTCATGC
1 TAGAGAATATTTACTGTTCATGC
*
76647293 TAGAGAATATTTACTATTCA
1 TAGAGAATATTTACTGTTCA
76647313 CATCAAAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 2 0.05
23 35 0.95
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (23 bp):
TAGAGAATATTTACTGTTCATGC
Found at i:76647588 original size:13 final size:13
Alignment explanation
Indices: 76647570--76647599 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
76647560 AAACTAGATT
*
76647570 TTAACTAAGTAAA
1 TTAACTAAGAAAA
76647583 TTAACTAAGAAAA
1 TTAACTAAGAAAA
76647596 TTAA
1 TTAA
76647600 AAGATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (13 bp):
TTAACTAAGAAAA
Found at i:76651323 original size:18 final size:18
Alignment explanation
Indices: 76651294--76651340 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
76651284 TAGTGTAGAA
* *
76651294 CAGTAAATAGTGCAGTAC
1 CAGTAAACAGTGCAATAC
* *
76651312 CAGTATACAGTGCAATAT
1 CAGTAAACAGTGCAATAC
76651330 CAGTAAACAGT
1 CAGTAAACAGT
76651341 ATGCAAGTCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.23
Consensus pattern (18 bp):
CAGTAAACAGTGCAATAC
Found at i:76651486 original size:21 final size:21
Alignment explanation
Indices: 76651462--76651532 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 21
76651452 CGGCACTAAA
76651462 CAGTATTTGCAGCAGAGCTAC
1 CAGTATTTGCAGCAGAGCTAC
* * *
76651483 CAGTATAAT--AGGCTTAGAGCCAT
1 CAGTAT-TTGCA-GC--AGAGCTAC
76651506 CAGTGATTTGCAGCAGAGCTAC
1 CAGT-ATTTGCAGCAGAGCTAC
76651528 CAGTA
1 CAGTA
76651533 CAGTACACTT
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
20 1 0.03
21 9 0.24
22 11 0.30
23 11 0.30
24 4 0.11
25 1 0.03
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (21 bp):
CAGTATTTGCAGCAGAGCTAC
Found at i:76651770 original size:27 final size:27
Alignment explanation
Indices: 76651660--76651771 Score: 79
Period size: 27 Copynumber: 4.1 Consensus size: 27
76651650 TATAAACATA
* *
76651660 TATCACAT-AGGGACAAAATAGTCATTT
1 TATCTCATAAGGG-CAAAATACTCATTT
* * *
76651687 TACCTTATAA-TGCAAAA-ACAATCATTT
1 TATCTCATAAGGGCAAAATAC--TCATTT
* * * *
76651714 TACCTCAGAAAGGCAAAACT-GTCATTT
1 TATCTCATAAGGGCAAAA-TACTCATTT
76651741 TATCTCATAAGGGCAAAATACTCATTT
1 TATCTCATAAGGGCAAAATACTCATTT
76651768 TATC
1 TATC
76651772 AATTTGAGGG
Statistics
Matches: 65, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
25 1 0.02
26 6 0.09
27 51 0.78
28 7 0.11
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (27 bp):
TATCTCATAAGGGCAAAATACTCATTT
Found at i:76656782 original size:16 final size:16
Alignment explanation
Indices: 76656761--76656793 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
76656751 AAAAAATAAA
76656761 AATCCTAACAGAACCT
1 AATCCTAACAGAACCT
*
76656777 AATCCTAACATAACCT
1 AATCCTAACAGAACCT
76656793 A
1 A
76656794 GGAAAGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.30, G:0.03, T:0.21
Consensus pattern (16 bp):
AATCCTAACAGAACCT
Found at i:76658434 original size:17 final size:17
Alignment explanation
Indices: 76658412--76658446 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
76658402 CAAGCAAGGT
76658412 GCGAGCAGGGATGGTGC
1 GCGAGCAGGGATGGTGC
* *
76658429 GCGAGCTGGTATGGTGC
1 GCGAGCAGGGATGGTGC
76658446 G
1 G
76658447 TGCAGGGGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.14, C:0.17, G:0.51, T:0.17
Consensus pattern (17 bp):
GCGAGCAGGGATGGTGC
Found at i:76658943 original size:16 final size:15
Alignment explanation
Indices: 76658917--76658955 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
76658907 TATATAAAGT
*
76658917 TAATAATAATAAATA
1 TAATTATAATAAATA
76658932 TACATTATAATAAATA
1 TA-ATTATAATAAATA
76658948 TAATTATA
1 TAATTATA
76658956 TATTAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (15 bp):
TAATTATAATAAATA
Found at i:76676961 original size:96 final size:96
Alignment explanation
Indices: 76676790--76676976 Score: 252
Period size: 96 Copynumber: 1.9 Consensus size: 96
76676780 TCGCTTCTTT
*
76676790 TTGCTCCTCTTAGCCCTCTTGGTGTCAGCTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
1 TTGCTCCTCTTAGCCCTCTTGGTGTCAGCTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCCAT
* * * *
76676855 GTCTGCTCCATCGTTCCCTTCGATGATACAC
66 ATCTACTCCATCATTCCCATCGATGATACAC
* * * *
76676886 TTGCTCCTCTTTGCCTTCTTGGCT-TC-GACTTTTTCCTTGCTCGAACCAAGCTTCTTGGGCTTC
1 TTGCTCCTCTTAGCCCTCTTGG-TGTCAG-CTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCC
*
76676949 ATATCTATTCCATCATTCCCATCGATGA
64 ATATCTACTCCATCATTCCCATCGATGA
76676977 CAGACTTCTT
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
95 1 0.01
96 77 0.97
97 1 0.01
ACGTcount: A:0.13, C:0.33, G:0.16, T:0.39
Consensus pattern (96 bp):
TTGCTCCTCTTAGCCCTCTTGGTGTCAGCTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCCAT
ATCTACTCCATCATTCCCATCGATGATACAC
Found at i:76679570 original size:10 final size:10
Alignment explanation
Indices: 76679555--76679615 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
76679545 ATATTGTTAT
76679555 ACATGATATG
1 ACATGATATG
76679565 ACATGATATG
1 ACATGATATG
76679575 CACATGATATG
1 -ACATGATATG
** *
76679586 TTATGAGATG
1 ACATGATATG
76679596 CACATGATATG
1 -ACATGATATG
76679607 -CTATGATAT
1 AC-ATGATAT
76679616 ACTCATTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (10 bp):
ACATGATATG
Found at i:76679580 original size:21 final size:20
Alignment explanation
Indices: 76679555--76679631 Score: 82
Period size: 21 Copynumber: 3.7 Consensus size: 20
76679545 ATATTGTTAT
76679555 ACATGATATGACATGATATGC
1 ACATGATATG-CATGATATGC
* *
76679576 ACATGATATGTTATGAGATGC
1 ACATGATATG-CATGATATGC
*
76679597 ACATGATATGCTATGATATAC
1 ACATGATATGC-ATGATATGC
* *
76679618 TCATTATATGCATG
1 ACATGATATGCATG
76679632 GGTTGGGTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
20 3 0.06
21 44 0.94
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:76687501 original size:21 final size:21
Alignment explanation
Indices: 76687445--76687502 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
76687435 ATATTGTTAT
76687445 ACATGATATGAC-ATGAAATGC
1 ACATGATATG-CTATGAAATGC
* * *
76687466 ATATGATATGTTATGAGATGC
1 ACATGATATGCTATGAAATGC
76687487 ACATGATATGCTATGA
1 ACATGATATGCTATGA
76687503 TATACTCATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (21 bp):
ACATGATATGCTATGAAATGC
Found at i:76687610 original size:24 final size:24
Alignment explanation
Indices: 76687553--76687624 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
76687543 AGAAAGTGCG
*
76687553 AAAAG-GGCTTTGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
76687577 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
76687601 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
76687625 ATGATAAAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 18 0.45
25 22 0.55
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:76691528 original size:50 final size:49
Alignment explanation
Indices: 76691395--76691574 Score: 174
Period size: 50 Copynumber: 3.7 Consensus size: 49
76691385 CTTGATATTT
**
76691395 GTCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACGGAA-A-AAGGAGA
1 GTCAGTGTAAGACCATGTCTAGGACATGGCATC-GC-CTCAATATAA-GAGA
* * * *
76691445 GCCAGTGTAAGACCATGTTTGGGATATGGCATCGGCCTCAATATAAGAGA
1 GTCAGTGTAAGACCATGTCTAGGACATGGCATC-GCCTCAATATAAGAGA
* * * *
76691495 GTCAGTGTAAGACCATGTATGGGACATGGCATCGACTCAATAT--GTG-
1 GTCAGTGTAAGACCATGTCTAGGACATGGCATCGCCTCAATATAAGAGA
76691541 GTTACA-TGTAAGACCATGTCTAGGACATGGCATC
1 G-T-CAGTGTAAGACCATGTCTAGGACATGGCATC
76691575 AACTAAATAT
Statistics
Matches: 112, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
46 1 0.01
47 29 0.26
48 2 0.02
49 12 0.11
50 66 0.59
51 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (49 bp):
GTCAGTGTAAGACCATGTCTAGGACATGGCATCGCCTCAATATAAGAGA
Found at i:76691567 original size:47 final size:47
Alignment explanation
Indices: 76691500--76691621 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
76691490 AGAGAGTCAG
* * * *
76691500 TGTAAGACCATGTATGGGACATGGCATCGACTCAATATGTGGTTACA
1 TGTAAGACCATGTCTAGGACATGGCATCAACTAAATATGTGGTTACA
76691547 TGTAAGACCATGTCTAGGACATGGCATCAACTAAATATGTGGTTACA
1 TGTAAGACCATGTCTAGGACATGGCATCAACTAAATATGTGGTTACA
*
76691594 TGTAAGACCATGTCTAGGATATTGGCAT
1 TGTAAGACCATGTCTAGGACA-TGGCAT
76691622 TGTATTGTGA
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
47 63 0.91
48 6 0.09
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (47 bp):
TGTAAGACCATGTCTAGGACATGGCATCAACTAAATATGTGGTTACA
Found at i:76691620 original size:145 final size:144
Alignment explanation
Indices: 76691353--76691621 Score: 323
Period size: 145 Copynumber: 1.9 Consensus size: 144
76691343 CATGTGAGCT
* * ** *
76691353 AGTGTAAGACCATGCCTGGGACATGGCATCGGCTTGATATTTGTCAGTGTAAGACCATGTCTAGG
1 AGTGTAAGACCATGCATGGGACATGGCATCGACTCAATATTGGTCAGTGTAAGACCATGTCTAGG
* * *
76691418 ACATGGCATCAGCACGGAAAAAGGAGAGCCAGTGTAAGACCATGTTTGGGATATGGCATCGGCCT
66 ACATGGCATCA-CACGGAAAAAGGAGAGACAGTGTAAGACCATGTCTAGGATATGGCATCGGCCT
76691483 CAATATAAGAGAGTC
130 CAATATAAGAGAGTC
*
76691498 AGTGTAAGACCATGTATGGGACATGGCATCGACTCAATATGTGGTTACA-TGTAAGACCATGTCT
1 AGTGTAAGACCATGCATGGGACATGGCATCGACTCAATAT-TGG-T-CAGTGTAAGACCATGTCT
* * **
76691562 AGGACATGGCATCA-AC-TAAATATGTG-GTTACA-TGTAAGACCATGTCTAGGATATTGGCAT
63 AGGACATGGCATCACACGGAAA-AAG-GAGAGACAGTGTAAGACCATGTCTAGGATA-TGGCAT
76691622 TGTATTGTGA
Statistics
Matches: 105, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
144 22 0.21
145 48 0.46
146 3 0.03
147 30 0.29
148 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (144 bp):
AGTGTAAGACCATGCATGGGACATGGCATCGACTCAATATTGGTCAGTGTAAGACCATGTCTAGG
ACATGGCATCACACGGAAAAAGGAGAGACAGTGTAAGACCATGTCTAGGATATGGCATCGGCCTC
AATATAAGAGAGTC
Found at i:76697853 original size:50 final size:50
Alignment explanation
Indices: 76697788--76697921 Score: 182
Period size: 50 Copynumber: 2.7 Consensus size: 50
76697778 CTTGATATGT
* * *
76697788 GTCAGTGTAAGACCATGTCTGGAACATGGCATCGGCAC-GGAAAGAGGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAAAGAAGAGA
* * *
76697838 G-CTAGTGTAAGACCATGTCTGGGATATGGCATCGGCCTCGATATAAGAGA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAAAGAAGAGA
76697888 GTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCG
76697922 ACTCAATATG
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
49 2 0.03
50 71 0.96
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAAAGAAGAGA
Found at i:76697917 original size:100 final size:95
Alignment explanation
Indices: 76697741--76697921 Score: 254
Period size: 100 Copynumber: 1.9 Consensus size: 95
76697731 CAATACATGT
* * *
76697741 GAGCTAGTGTAATACCATGTCTGAGACATGACATCGGCTTGATATGTGTCAGTGTAAGACCATGT
1 GAGCTAGTGTAAGACCATGTCTGAGACATGACATCGGCTCGATATGAGTCAGTGTAAGACCATGT
76697806 CTGGAACATGGCATCGGCACGGAAAGAGGA
66 CTGGAACATGGCATCGGCACGGAAAGAGGA
* * *
76697836 GAGCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCCTCGATATAAGAGAGTCAGTGTAAGAC
1 GAGCTAGTGTAAGACCATGTCTGAGACATGACATCGG-CTCGATAT----GAGTCAGTGTAAGAC
*
76697901 CATGTCTGGGACATGGCATCG
61 CATGTCTGGAACATGGCATCG
76697922 ACTCAATATG
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
95 33 0.45
96 7 0.09
100 34 0.46
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (95 bp):
GAGCTAGTGTAAGACCATGTCTGAGACATGACATCGGCTCGATATGAGTCAGTGTAAGACCATGT
CTGGAACATGGCATCGGCACGGAAAGAGGA
Found at i:76697961 original size:47 final size:50
Alignment explanation
Indices: 76697793--76697967 Score: 162
Period size: 50 Copynumber: 3.5 Consensus size: 50
76697783 TATGTGTCAG
* * * * * *
76697793 TGTAAGACCATGTCTGGAACATGGCATCGGCAC-GGAAAGAGGAGAGCT-AG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-ACTCGATATAAGAGAG-TAAA
* * * *
76697843 TGTAAGACCATGTCTGGGATATGGCATCGGCCTCGATATAAGAGAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGACTCGATATAAGAGAGTAAA
* * *
76697893 TGTAAGACCATGTCTGGGACATGGCATC-GACTC-A-ATATGTGATTAAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGACTCGATATAAGAGAGTAAA
*
76697940 TGTAAGACCATGTCTAGGACATTGGCAT
1 TGTAAGACCATGTCTGGGACA-TGGCAT
76697968 TGTATTGTGA
Statistics
Matches: 107, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
47 28 0.26
48 7 0.07
49 6 0.06
50 66 0.62
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGACTCGATATAAGAGAGTAAA
Found at i:76697991 original size:43 final size:43
Alignment explanation
Indices: 76697893--76698056 Score: 136
Period size: 43 Copynumber: 3.7 Consensus size: 43
76697883 AGAGAGTCAG
* *
76697893 TGTAAGACCATGTCTGGGACATGGCATCGACTCAATATGTGATTAA-A
1 TGTAAGACCATGTCTAGGACATGGCATTG--T--ATATGTGA-TAACA
** *
76697940 TGTAAGACCATGTCTAGGACATTGGCATTGTAT-TGTGATTTCT
1 TGTAAGACCATGTCTAGGACA-TGGCATTGTATATGTGATAACA
* * * *
76697983 TGTAAGACCCTGTGTGGGACAGTGGCATCG-ATATGTGATAACA
1 TGTAAGACCATGTCTAGGACA-TGGCATTGTATATGTGATAACA
* **
76698026 TGTAAGACCATATCTAGGGTATGGCATTGTA
1 TGTAAGACCATGTCTAGGACATGGCATTGTA
76698057 CGAGCTATAT
Statistics
Matches: 93, Mismatches: 20, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
42 10 0.11
43 53 0.57
44 2 0.02
46 1 0.01
47 20 0.22
48 7 0.08
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACATGGCATTGTATATGTGATAACA
Found at i:76702151 original size:28 final size:27
Alignment explanation
Indices: 76702054--76702167 Score: 137
Period size: 27 Copynumber: 4.2 Consensus size: 27
76702044 AGCATGGCTG
* *
76702054 CCAG-AACAGATATTGTGACAGAGTCA
1 CCAGAAACAGATATTGTGGCAGAGCCA
76702080 CCA-AATACAGATATTGTGGCAGAGCCA
1 CCAGAA-ACAGATATTGTGGCAGAGCCA
76702107 CCAG-AACAGATATTTGTGGC-GTAGCCA
1 CCAGAAACAGATA-TTGTGGCAG-AGCCA
*
76702134 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAGAAACAGATA-TTGTGGCAGAGCCA
76702162 CCAGAA
1 CCAGAA
76702168 CACTTTCTCC
Statistics
Matches: 78, Mismatches: 3, Indels: 12
0.84 0.03 0.13
Matches are distributed among these distances:
26 12 0.15
27 39 0.50
28 27 0.35
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (27 bp):
CCAGAAACAGATATTGTGGCAGAGCCA
Found at i:76702167 original size:55 final size:53
Alignment explanation
Indices: 76702054--76702169 Score: 155
Period size: 55 Copynumber: 2.2 Consensus size: 53
76702044 AGCATGGCTG
*
76702054 CCAGAACAGATATTGTGACAGAGTCACCAAATACAGATATTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAAATACAGATATTGTGGCAGAGCCA
* *
76702107 CCAGAACAGATATTTGTGGC-GTAGCCACCAGAA-ACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAG-AGCCACCA-AATACAGATA-TTGTGGCAGAGCCA
76702162 CCAGAACA
1 CCAGAACA
76702170 CTTTCTCCAT
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
53 13 0.23
54 20 0.36
55 23 0.41
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAAATACAGATATTGTGGCAGAGCCA
Found at i:76704429 original size:28 final size:28
Alignment explanation
Indices: 76704345--76704430 Score: 82
Period size: 28 Copynumber: 3.1 Consensus size: 28
76704335 GTAGATTATT
* *
76704345 GAGTATGGTACATAGTGTGCGAAACATC
1 GAGTATGGTACATAGTATGCGAGACATC
* * * * * * **
76704373 CAGAATAGCACTTAGCATGCGAGGTATC
1 GAGTATGGTACATAGTATGCGAGACATC
76704401 GAGTATGGTACATAGTATGCGAGACATC
1 GAGTATGGTACATAGTATGCGAGACATC
76704429 GA
1 GA
76704431 AGATGCAACG
Statistics
Matches: 40, Mismatches: 18, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (28 bp):
GAGTATGGTACATAGTATGCGAGACATC
Found at i:76707551 original size:27 final size:27
Alignment explanation
Indices: 76707437--76707545 Score: 130
Period size: 27 Copynumber: 4.0 Consensus size: 27
76707427 TAAGGGAAAA
* * *
76707437 CAGTCATTTTACCCTAC-AGAGGTATGT
1 CAGTAATTTTACACTACAAG-GGTATTT
* *
76707464 CGGTCATTTTACACTACAAGGGTATTT
1 CAGTAATTTTACACTACAAGGGTATTT
* *
76707491 CAGTAATTTTACATTGCAAGGGTATTT
1 CAGTAATTTTACACTACAAGGGTATTT
*
76707518 CAGTAATTTTATACTACAAGGGTATTT
1 CAGTAATTTTACACTACAAGGGTATTT
76707545 C
1 C
76707546 GATAATGTTA
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 69 0.97
28 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (27 bp):
CAGTAATTTTACACTACAAGGGTATTT
Found at i:76707567 original size:27 final size:27
Alignment explanation
Indices: 76707537--76707823 Score: 203
Period size: 27 Copynumber: 10.6 Consensus size: 27
76707527 TATACTACAA
* *
76707537 GGGTATTTCGATAATGTTATAAATCCG
1 GGGTATTTCGATAATTTTACAAATCCG
* *
76707564 GGGTGTTTC-AGTAATTTTACAAATCGG
1 GGGTATTTCGA-TAATTTTACAAATCCG
* **
76707591 GGGTGTTTCGATAATTTTACAAATCAA
1 GGGTATTTCGATAATTTTACAAATCCG
76707618 GGGTATTTCGATAATTTTACAAAT-CG
1 GGGTATTTCGATAATTTTACAAATCCG
* *
76707644 AGAGTATTTCGGTAATTTTACAAAT-CG
1 -GGGTATTTCGATAATTTTACAAATCCG
* * * * ***
76707671 AAGGTGTTTCGGTAATTTTTCAAATAAA
1 -GGGTATTTCGATAATTTTACAAATCCG
* * * *
76707699 GGGTGTTTTGGTAAATTTACAAAT-CG
1 GGGTATTTCGATAATTTTACAAATCCG
* * * *
76707725 AGGGTGTTTTGGTAATTTTACAAATCGG
1 -GGGTATTTCGATAATTTTACAAATCCG
*
76707753 GGGTATTT-TAGTAATTTTAC-AATCCGG
1 GGGTATTTCGA-TAATTTTACAAATCC-G
*
76707780 GGGTACTTT-GGTAATTTTACAAAT-CG
1 GGGTA-TTTCGATAATTTTACAAATCCG
*
76707806 GGGTTATTTCGGTAATTT
1 GGG-TATTTCGATAATTT
76707824 CTCTTTATTA
Statistics
Matches: 217, Mismatches: 31, Indels: 24
0.80 0.11 0.09
Matches are distributed among these distances:
26 12 0.06
27 197 0.91
28 8 0.04
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATCCG
Found at i:76707600 original size:54 final size:53
Alignment explanation
Indices: 76707537--76707823 Score: 242
Period size: 54 Copynumber: 5.3 Consensus size: 53
76707527 TATACTACAA
* *
76707537 GGGTATTTCGATAATGTTATAAATCCGGGGTGTTTCAGTAATTTTACAAATCGG
1 GGGTATTTCGATAAT-TTACAAATCCGGGGTGTTTCGGTAATTTTACAAATCGG
* ** * * *
76707591 GGGTGTTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTCGATAA-TTTACAAATCCGGGGTGTTTCGGTAATTTTACAAATCGG
* * * * ***
76707645 GAGTATTTCGGTAATTTTACAAAT-CGAAGGTGTTTCGGTAATTTTTCAAATAAA
1 GGGTATTTCGATAA-TTTACAAATCCG-GGGTGTTTCGGTAATTTTACAAATCGG
* * * *
76707699 GGGTGTTTTGGTAAATTTACAAAT-CGAGGGTGTTTTGGTAATTTTACAAATCGG
1 GGGTATTTCGAT-AATTTACAAATCCG-GGGTGTTTCGGTAATTTTACAAATCGG
* *
76707753 GGGTATTT-TAGTAATTTTAC-AATCCGGGG-GTACTTTGGTAATTTTACAAATCGG
1 GGGTATTTCGA-TAA-TTTACAAATCCGGGGTGT--TTCGGTAATTTTACAAATCGG
* *
76707807 GGTTATTTCGGTAATTT
1 GGGTATTTCGATAATTT
76707824 CTCTTTATTA
Statistics
Matches: 190, Mismatches: 34, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
52 2 0.01
53 11 0.06
54 174 0.92
55 3 0.02
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (53 bp):
GGGTATTTCGATAATTTACAAATCCGGGGTGTTTCGGTAATTTTACAAATCGG
Found at i:76707767 original size:81 final size:80
Alignment explanation
Indices: 76707535--76707774 Score: 268
Period size: 81 Copynumber: 3.0 Consensus size: 80
76707525 TTTATACTAC
* * *
76707535 AAGGGTATTTCGAT-AATGTTATAAATCCG-GGGTGTTTCAGTAATTTTACAAATCGGGGGTGTT
1 AAGGGTATTTCGATAAAT-TTACAAAT-CGAGGGTGTTTCGGTAATTTTACAAATCGGGGGTTTT
* *
76707598 TCGATAATTTTACAAATC
64 TAG-TAATTTTACAAATA
* * * ** *
76707616 AAGGGTATTTCGATAATTTTACAAATCGAGAGTATTTCGGTAATTTTACAAATCGAAGGTGTTTC
1 AAGGGTATTTCGATAAATTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGGGGGT-TTTT
* *
76707681 GGTAATTTTTCAAATA
65 AGTAATTTTACAAATA
* * * *
76707697 AAGGGTGTTTTGGTAAATTTACAAATCGAGGGTGTTTTGGTAATTTTACAAATCGGGGGTATTTT
1 AAGGGTATTTCGATAAATTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGGGGGT-TTTT
76707762 AGTAATTTTACAA
65 AGTAATTTTACAA
76707775 TCCGGGGGTA
Statistics
Matches: 131, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
80 2 0.02
81 124 0.95
82 5 0.04
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (80 bp):
AAGGGTATTTCGATAAATTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGGGGGTTTTTA
GTAATTTTACAAATA
Found at i:76707790 original size:81 final size:79
Alignment explanation
Indices: 76707537--76707823 Score: 258
Period size: 81 Copynumber: 3.5 Consensus size: 79
76707527 TATACTACAA
* * * * * *
76707537 GGGTATTTCGATAATGTTATAAATCCG-GGGTGTTTCAGTAATTTTACAAATCGGGGGTGTTTCG
1 GGGTATTT-GGTAATTTTACAAAT-CGAGGGTGTTTCGGTAATTTTACAAATCGGGGGTTTTTAG
**
76707601 ATAATTTTACAAATCAA
64 -TAATTTTACAAATCGG
* * * ** **
76707618 GGGTATTTCGATAATTTTACAAATCGAGAGTATTTCGGTAATTTTACAAATCGAAGGTGTTTCGG
1 GGGTATTT-GGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGGGGGT-TTTTAG
* *
76707683 TAATTTTTCAAATAAAGG
64 TAATTTTACAAAT--CGG
* * *
76707701 GTGT-TTTGGTAAATTTACAAATCGAGGGTGTTTTGGTAATTTTACAAATCGGGGGTATTTTAGT
1 GGGTATTTGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGGGGGT-TTTTAGT
76707765 AATTTTAC-AATCCGG
65 AATTTTACAAAT-CGG
*
76707780 GGGTACTTTGGTAATTTTACAAATCG-GGGTTATTTCGGTAATTT
1 GGGTA-TTTGGTAATTTTACAAATCGAGGG-TGTTTCGGTAATTT
76707824 CTCTTTATTA
Statistics
Matches: 167, Mismatches: 32, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
79 5 0.03
80 8 0.05
81 145 0.87
82 6 0.04
83 3 0.02
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.39
Consensus pattern (79 bp):
GGGTATTTGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGGGGGTTTTTAGTA
ATTTTACAAATCGG
Found at i:76710340 original size:16 final size:16
Alignment explanation
Indices: 76710302--76710341 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
76710292 AAATGCAATT
*
76710302 ATAAAAATAAAAAGTA
1 ATAAAAATAAAAAATA
* *
76710318 GTTAAAATAAAAAATA
1 ATAAAAATAAAAAATA
76710334 ATAAAAAT
1 ATAAAAAT
76710342 TCCACTTTTT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
ATAAAAATAAAAAATA
Found at i:76714209 original size:12 final size:12
Alignment explanation
Indices: 76714192--76714219 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
76714182 CACACACGCT
76714192 CGTGTGCTAGGC
1 CGTGTGCTAGGC
76714204 CGTGTGCTAGGC
1 CGTGTGCTAGGC
76714216 CGTG
1 CGTG
76714220 CCAAACCTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.25, G:0.43, T:0.25
Consensus pattern (12 bp):
CGTGTGCTAGGC
Found at i:76720477 original size:40 final size:41
Alignment explanation
Indices: 76720394--76720474 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 41
76720384 ATAACTATAA
*
76720394 AATAAAATTTTAAAATCTAATAAAAAATAAAAAAATAGTTTT
1 AATAAAAATTTAAAATC-AATAAAAAATAAAAAAATAGTTTT
*
76720436 AATAAAAATTTAAAA-C-ATAAAATAATAAATAAAT-GTTTT
1 AATAAAAATTTAAAATCAATAAAA-AATAAAAAAATAGTTTT
76720475 TAAACATCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
39 11 0.31
40 10 0.28
41 1 0.03
42 14 0.39
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (41 bp):
AATAAAAATTTAAAATCAATAAAAAATAAAAAAATAGTTTT
Found at i:76730494 original size:61 final size:61
Alignment explanation
Indices: 76730399--76730520 Score: 226
Period size: 61 Copynumber: 2.0 Consensus size: 61
76730389 CTCAAATGCT
76730399 CGGCATACTCAGACTAATCTCGTGAATAGATTAGAATGTCGTCAATAAATACCCTAACAAA
1 CGGCATACTCAGACTAATCTCGTGAATAGATTAGAATGTCGTCAATAAATACCCTAACAAA
* *
76730460 CGGCATTCTCAGACTCATCTCGTGAATAGATTAGAATGTCGTCAATAAATACCCTAACAAA
1 CGGCATACTCAGACTAATCTCGTGAATAGATTAGAATGTCGTCAATAAATACCCTAACAAA
76730521 TCTATCTAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (61 bp):
CGGCATACTCAGACTAATCTCGTGAATAGATTAGAATGTCGTCAATAAATACCCTAACAAA
Found at i:76735063 original size:27 final size:27
Alignment explanation
Indices: 76735033--76735600 Score: 682
Period size: 27 Copynumber: 21.0 Consensus size: 27
76735023 AAAGTACTCC
*
76735033 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
76735060 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
76735087 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
76735114 C-AGTTTATAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
76735141 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
76735168 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
76735195 C-AGTTTATAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
76735222 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
76735249 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
**
76735276 CGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ***
76735303 CAATTAGTA-A-AATTATTATTTTACCCT
1 CGATT--TACAGAATTACCGTTTTACCCT
76735330 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
76735357 C-AGTTTATAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
76735384 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
76735411 C-AGTTTATAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
76735438 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
76735465 CAATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
76735492 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
76735519 CGATTTATAGAATTACTGGTTTACCTT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
76735546 CGGTTTACAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
76735573 CAATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
76735600 C
1 C
76735601 AATTGTGAAA
Statistics
Matches: 471, Mismatches: 56, Indels: 28
0.85 0.10 0.05
Matches are distributed among these distances:
25 2 0.00
26 6 0.01
27 455 0.97
28 6 0.01
29 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:76735639 original size:27 final size:27
Alignment explanation
Indices: 76735609--76735803 Score: 212
Period size: 27 Copynumber: 7.2 Consensus size: 27
76735599 TCAATTGTGA
*
76735609 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
76735636 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
76735663 AATTACTAAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
76735690 AATTACTGAAATACCCCCGTAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
76735717 AATTA-TCGAAATACCCCCGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * *
76735744 AAATACCGAAATATCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * ** * *
76735771 AATTACCGAGATACCTTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
76735798 AATTAC
1 AATTAC
76735804 CATTTTGCCC
Statistics
Matches: 143, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 142 0.99
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:76736064 original size:27 final size:26
Alignment explanation
Indices: 76736007--76736081 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
76735997 GGAAGCATTC
* * *
76736007 TGGTGGCTATGCCACAAATATCTGTTC
1 TGGTGGCTCTGCCAC-AATATTTGTTA
*
76736034 TGGTGGTTCTGCCACAATATTTGTATA
1 TGGTGGCTCTGCCACAATATTTGT-TA
* *
76736061 TGGTGACTCTGTCACAATATT
1 TGGTGGCTCTGCCACAATATT
76736082 AGCCATAAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 8 0.20
27 32 0.80
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATTTGTTA
Found at i:76737342 original size:8 final size:8
Alignment explanation
Indices: 76737300--76737324 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
76737290 ATATAGACTA
76737300 AATAAAAT
1 AATAAAAT
76737308 AATAAAAT
1 AATAAAAT
76737316 AATAAAAT
1 AATAAAAT
76737324 A
1 A
76737325 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:76737348 original size:29 final size:31
Alignment explanation
Indices: 76737297--76737369 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 31
76737287 TATATATAGA
*
76737297 CTAAATAAAATAATAAAATAATAA-AA-TAT
1 CTAATTAAAATAATAAAATAATAATAATTAT
* *
76737326 CTTATTAAAAT-ATTAAATAAATAATAATTAT
1 CTAATTAAAATAATAAAAT-AATAATAATTAT
76737357 CTAATT-AAATAAT
1 CTAATTAAAATAAT
76737370 TATAAAATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
28 6 0.17
29 14 0.39
30 6 0.17
31 10 0.28
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (31 bp):
CTAATTAAAATAATAAAATAATAATAATTAT
Found at i:76737374 original size:29 final size:30
Alignment explanation
Indices: 76737304--76737375 Score: 71
Period size: 31 Copynumber: 2.4 Consensus size: 30
76737294 AGACTAAATA
*
76737304 AAATAA-TA-AAATAATAAAATATCTTATT
1 AAATAATTATAAATAATAAAATATCTAATT
*
76737332 AAA-ATATTAAATAAATAAT-AATTATCTAATT
1 AAATA-ATT--ATAAATAATAAAATATCTAATT
76737363 AAATAATTATAAA
1 AAATAATTATAAA
76737376 ATATCACCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
27 1 0.03
28 4 0.11
29 6 0.17
31 17 0.47
32 8 0.22
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (30 bp):
AAATAATTATAAATAATAAAATATCTAATT
Found at i:76741422 original size:43 final size:43
Alignment explanation
Indices: 76741374--76741539 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 43
76741364 TATCGAGAGA
* *
76741374 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
76741417 TGTGATTACGTGTAAGACCATGTCTGGGATATTGGCATCGTTAA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAT
* * * * *
76741461 T-CGATTTCGTTTAAGACCCTGTCT-GGAGCATTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGA-CATTGGCATCGTAT
* * *
76741502 ATGTGATAACATGTAAGACCATATCTAGGACA-TGGCAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
76741540 TGTACAAGCT
Statistics
Matches: 100, Mismatches: 18, Indels: 11
0.78 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 10 0.10
43 83 0.83
44 6 0.06
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:76749344 original size:33 final size:33
Alignment explanation
Indices: 76749253--76749410 Score: 122
Period size: 33 Copynumber: 4.8 Consensus size: 33
76749243 ATATAATAGG
* * * * *
76749253 GTAAGTCTTCTGGGATAGCAAACA-AAGAACAAA
1 GTAAGTCTGCTAGGACAGTAAACACAA-AACAGA
* * *
76749286 GTAAGTCCGCTAAGACAGTAGACACAAAACAGA
1 GTAAGTCTGCTAGGACAGTAAACACAAAACAGA
* * * *
76749319 GTAAGTCTGCTAGGATAATAAACACAAAATAGG
1 GTAAGTCTGCTAGGACAGTAAACACAAAACAGA
* * *
76749352 GTAAGCCTGCCAGGACAGTAAACACAGAACATG-
1 GTAAGTCTGCTAGGACAGTAAACACAAAACA-GA
* * *
76749385 GTAACTCTGCTGGGACACTAAACACA
1 GTAAGTCTGCTAGGACAGTAAACACA
76749411 GGAGAGTCCA
Statistics
Matches: 97, Mismatches: 26, Indels: 4
0.76 0.20 0.03
Matches are distributed among these distances:
33 94 0.97
34 3 0.03
ACGTcount: A:0.42, C:0.20, G:0.22, T:0.16
Consensus pattern (33 bp):
GTAAGTCTGCTAGGACAGTAAACACAAAACAGA
Found at i:76751427 original size:22 final size:20
Alignment explanation
Indices: 76751402--76751444 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
76751392 GAAGTTTCGA
76751402 TAGTTTAACTTAGGTTTAATTT
1 TAGTTTAA-TTA-GTTTAATTT
*
76751424 TAGTTTAATTAGTTTTATTT
1 TAGTTTAATTAGTTTAATTT
76751444 T
1 T
76751445 CAACTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 3 0.15
22 8 0.40
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (20 bp):
TAGTTTAATTAGTTTAATTT
Found at i:76765154 original size:33 final size:34
Alignment explanation
Indices: 76765087--76765155 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 34
76765077 AAGGAATGTT
* *
76765087 TGGTTGAGTGTTGAGCAAATGATGCATTATTCTA
1 TGGTTGAATGTTGAGCAAATGATGCATTACTCTA
*
76765121 TGGTTGAATG-TGTGCAAATGATG-AGTTACTCTA
1 TGGTTGAATGTTGAGCAAATGATGCA-TTACTCTA
76765154 TG
1 TG
76765156 ACTGAATATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 1 0.03
33 21 0.68
34 9 0.29
ACGTcount: A:0.26, C:0.09, G:0.28, T:0.38
Consensus pattern (34 bp):
TGGTTGAATGTTGAGCAAATGATGCATTACTCTA
Found at i:76767777 original size:21 final size:20
Alignment explanation
Indices: 76767738--76767779 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
76767728 GGTCGTATTT
76767738 ATATAAGTTGAATAAACTTA
1 ATATAAGTTGAATAAACTTA
76767758 ATATAGAG-TGAATAAAACTTA
1 ATATA-AGTTGAAT-AAACTTA
76767779 A
1 A
76767780 ATTGGAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.52, C:0.05, G:0.12, T:0.31
Consensus pattern (20 bp):
ATATAAGTTGAATAAACTTA
Found at i:76769076 original size:22 final size:22
Alignment explanation
Indices: 76769048--76769095 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
76769038 GAGTCCCGGT
76769048 GTTAAAAAAAATCATATCTCAA
1 GTTAAAAAAAATCATATCTCAA
76769070 GTTAAAAAAAATCATATCTCAA
1 GTTAAAAAAAATCATATCTCAA
76769092 GTTA
1 GTTA
76769096 CACATAGTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.52, C:0.12, G:0.06, T:0.29
Consensus pattern (22 bp):
GTTAAAAAAAATCATATCTCAA
Found at i:76770690 original size:15 final size:15
Alignment explanation
Indices: 76770634--76770698 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
76770624 TAAAGATAAC
*
76770634 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
76770648 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
76770663 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
76770678 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
76770693 AAGAAA
1 AAGAAA
76770699 CCTAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:76770700 original size:30 final size:30
Alignment explanation
Indices: 76770634--76770700 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
76770624 TAAAGATAAC
*
76770634 AAGAAAACCGAATAAAGAAATCCAAGATAG
1 AAGAAACCCGAATAAAGAAATCCAAGATAG
76770664 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCC-GAATAAAGAAATCCAAG-ATAG
76770693 AAGAAACC
1 AAGAAACC
76770701 TAAGATACGA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.61, C:0.16, G:0.13, T:0.09
Consensus pattern (30 bp):
AAGAAACCCGAATAAAGAAATCCAAGATAG
Found at i:76771012 original size:39 final size:39
Alignment explanation
Indices: 76770969--76771043 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
76770959 GGAATAGAGC
76770969 AATATAAATTATAAACCAGTCAGGCTACCAATGCTTAGA
1 AATATAAATTATAAACCAGTCAGGCTACCAATGCTTAGA
76771008 AATATAAATTATAAACCAGTCAGGCTACCAATGCTT
1 AATATAAATTATAAACCAGTCAGGCTACCAATGCTT
76771044 TCATTTAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.43, C:0.19, G:0.12, T:0.27
Consensus pattern (39 bp):
AATATAAATTATAAACCAGTCAGGCTACCAATGCTTAGA
Found at i:76773914 original size:50 final size:49
Alignment explanation
Indices: 76773752--76773976 Score: 265
Period size: 49 Copynumber: 4.5 Consensus size: 49
76773742 CTGGTATGCA
* * *
76773752 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTAT-TCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCT-GGTACACG
*
76773801 TAGTAGCCTGCACTTTGTACTACACACGTGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
** *
76773850 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACG
* * * * * *
76773900 TAGTAGCCTACACTTAGTACTGCACACGTGATCATAGTTTTC-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCA-A-TTATCTG-GTACACG
*
76773951 TAGTAGCTTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
76773977 TGCGACCTCA
Statistics
Matches: 151, Mismatches: 20, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
49 76 0.50
50 46 0.30
51 29 0.19
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
Found at i:76773930 original size:99 final size:100
Alignment explanation
Indices: 76773750--76773983 Score: 278
Period size: 99 Copynumber: 2.4 Consensus size: 100
76773740 ATCTGGTATG
* * ** * *
76773750 CATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATTCGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATTCGATACACGTAGTAGCCTACACT
*
76773815 TTGTACTACACACGTGACCA-A-TTATCTG-GTACA
66 TAGTACTACACACGTGACCATAGTTATC-GAGTACA
* *
76773848 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA-TCTGATACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATTC-GATACACGTAGTAGCCTACA
* * * *
76773912 CTTAGTACTGCACACGTGATCATAGTTTTCGAGTACG
64 CTTAGTACTACACACGTGACCATAGTTATCGAGTACA
* *
76773949 CATAGTAGCTTGCACTTAGTACTACACATGCGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC
76773984 TCACAATAGA
Statistics
Matches: 114, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
98 33 0.29
99 40 0.35
100 2 0.02
101 39 0.34
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (100 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATTCGATACACGTAGTAGCCTACACT
TAGTACTACACACGTGACCATAGTTATCGAGTACA
Found at i:76778361 original size:27 final size:26
Alignment explanation
Indices: 76778331--76778462 Score: 140
Period size: 27 Copynumber: 4.9 Consensus size: 26
76778321 GGAAAAATGG
* *
76778331 TAATTTTACCCCACGAGGGTATCTCGA
1 TAATTTTACCCTAC-AGGGTATTTCGA
*
76778358 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTTTACCCTACA-GGGTATTTCGA
76778385 T-ATTTCTACCCTACAAGGGTATTTCGA
1 TAATTT-TACCCTAC-AGGGTATTTCGA
* * *
76778412 TAATTCTATCCTACAGGGGTATTTCGT
1 TAATTTTACCCTACA-GGGTATTTCGA
*
76778439 TAATTCTACCCTACAGGGGTATTT
1 TAATTTTACCCTACA-GGGTATTT
76778463 TAGTAATTCT
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
26 5 0.05
27 83 0.90
28 4 0.04
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (26 bp):
TAATTTTACCCTACAGGGTATTTCGA
Found at i:76778461 original size:54 final size:54
Alignment explanation
Indices: 76778331--76778462 Score: 192
Period size: 54 Copynumber: 2.4 Consensus size: 54
76778321 GGAAAAATGG
* * * *
76778331 TAATTTTACCCCACGAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA
* * *
76778385 TATTTCTACCCTACAAGGGTATTTCGATAATTCTATCCTACAGGGGTATTTCGT
1 TAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA
*
76778439 TAATTCTACCCTACAGGGGTATTT
1 TAATTCTACCCTACAAGGGTATTT
76778463 TAGTAATTCT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (54 bp):
TAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA
Found at i:76778474 original size:27 final size:27
Alignment explanation
Indices: 76778347--76778462 Score: 187
Period size: 27 Copynumber: 4.3 Consensus size: 27
76778337 TACCCCACGA
*
76778347 GGGTATCTCGATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
76778374 GGGTATTTCGATATTTCTACCCTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
*
76778401 GGGTATTTCGATAATTCTATCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
76778428 GGGTATTTCGTTAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
76778455 GGGTATTT
1 GGGTATTT
76778463 TAGTAATTCT
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCCTACAG
Found at i:76782588 original size:28 final size:28
Alignment explanation
Indices: 76782546--76782655 Score: 150
Period size: 28 Copynumber: 3.9 Consensus size: 28
76782536 ATGACTGTAG
*
76782546 ATGTGATTGGACCTAAT-GGCCATATGA
1 ATGTGATTGGGCCTAATGGGCCATATGA
* *
76782573 ATGTGATTTGGGCCTAATGGGCCACATAA
1 ATGTGA-TTGGGCCTAATGGGCCATATGA
76782602 ATGTGATTGGGCCTAATGGGCCATATGA
1 ATGTGATTGGGCCTAATGGGCCATATGA
* * *
76782630 AAGAGATTGGGCCTAATGGGCTATAT
1 ATGTGATTGGGCCTAATGGGCCATAT
76782656 ACAGGTATAT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
27 6 0.08
28 53 0.73
29 14 0.19
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
ATGTGATTGGGCCTAATGGGCCATATGA
Found at i:76794639 original size:37 final size:37
Alignment explanation
Indices: 76794589--76794667 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
76794579 TTATTACGAA
* * *
76794589 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
76794626 GTCTTACTCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
76794663 GTCTT
1 GTCTT
76794668 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:76794862 original size:49 final size:49
Alignment explanation
Indices: 76794785--76794942 Score: 266
Period size: 49 Copynumber: 3.2 Consensus size: 49
76794775 GCCCTTCGGG
*
76794785 ACTTATCACATTCATCACATTGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
76794835 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
* *
76794884 ATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
76794931 ACTTTCACATTC
1 ACTTTCACATTC
76794943 TCAAAGTAAG
Statistics
Matches: 104, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
47 19 0.18
49 81 0.78
50 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
Found at i:76798405 original size:16 final size:16
Alignment explanation
Indices: 76798384--76798415 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
76798374 ATTGATTAGA
76798384 TAAGTTAATTTTGATT
1 TAAGTTAATTTTGATT
76798400 TAAGTTAATTTTGATT
1 TAAGTTAATTTTGATT
76798416 ACTTATAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (16 bp):
TAAGTTAATTTTGATT
Found at i:76802001 original size:27 final size:26
Alignment explanation
Indices: 76801953--76802012 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
76801943 GCGAGGCTGC
*
76801953 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
76801980 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
76802006 CAGATAT
1 CAGATAT
76802013 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:76807413 original size:47 final size:45
Alignment explanation
Indices: 76807360--76807509 Score: 149
Period size: 49 Copynumber: 3.2 Consensus size: 45
76807350 AAGGATAATA
* *
76807360 TAAAAATATATACATGAAATAGTATAAAAACATATAACTAATGGTAT
1 TAAAAATATATACATGAAATA-CATAAAAATATATAA-TAATGGTAT
* * *
76807407 TAAAAATACATACATGAGATAACAT-AAAATATATGAATAGTAGGATATT
1 TAAAAATATATACATGAAAT-ACATAAAAATATAT-AATAAT-GG-TA-T
* * *
76807456 TAAAAATATATACATAAAATACATAAATATATATAATTAATGGTAC
1 TAAAAATATATACATGAAATACATAAAAATATATAA-TAATGGTAT
76807502 TAAAAATA
1 TAAAAATA
76807510 CTTACATAAT
Statistics
Matches: 85, Mismatches: 11, Indels: 15
0.77 0.10 0.14
Matches are distributed among these distances:
46 19 0.22
47 26 0.31
48 11 0.13
49 29 0.34
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.30
Consensus pattern (45 bp):
TAAAAATATATACATGAAATACATAAAAATATATAATAATGGTAT
Found at i:76807469 original size:49 final size:49
Alignment explanation
Indices: 76807342--76807496 Score: 142
Period size: 49 Copynumber: 3.2 Consensus size: 49
76807332 ACTAATATTA
* ** *
76807342 ATAA-TAATAAGGATAATATAAAAATATATACATGAAATAGTATAAAAACAT
1 ATAACTAAT-AGGAT-ATTTAAAAATATATACATGAAATAACAT-AAAATAT
* *
76807393 ATAACTAAT-GG-TA-TTAAAAATACATACATGAGATAACATAAAATAT
1 ATAACTAATAGGATATTTAAAAATATATACATGAAATAACATAAAATAT
* *
76807439 ATGAA-TAGTAGGATATTTAAAAATATATACATAAAAT-ACATAAATATAT
1 AT-AACTAATAGGATATTTAAAAATATATACATGAAATAACATAAA-ATAT
*
76807488 ATAATTAAT
1 ATAACTAAT
76807497 GGTACTAAAA
Statistics
Matches: 86, Mismatches: 11, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
46 11 0.13
47 25 0.29
48 12 0.14
49 28 0.33
50 2 0.02
51 4 0.05
52 4 0.05
ACGTcount: A:0.57, C:0.05, G:0.08, T:0.30
Consensus pattern (49 bp):
ATAACTAATAGGATATTTAAAAATATATACATGAAATAACATAAAATAT
Found at i:76807698 original size:17 final size:18
Alignment explanation
Indices: 76807661--76807700 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
76807651 TAACAATAAC
*
76807661 AAAATATTGATAATAAAT
1 AAAATAATGATAATAAAT
*
76807679 AAAATAATGAT-ATTAAT
1 AAAATAATGATAATAAAT
76807696 AAAAT
1 AAAAT
76807701 GTAATAGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (18 bp):
AAAATAATGATAATAAAT
Found at i:76809613 original size:88 final size:88
Alignment explanation
Indices: 76809326--76809804 Score: 440
Period size: 88 Copynumber: 5.4 Consensus size: 88
76809316 GTGATCTTGA
** * * * * * *
76809326 GCTCAACTCATTTCTCGCAATATGAATTGA-CTCTTTAAAAACAGACATT--AAAAACAGAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATATAAATTGAAAAAACAG-AATT
* * *
76809388 GAAAATAGCTCAGCACGTGAACC-AAG
65 GAAAATACCTCA--ACGTG-TCCTGAG
* * * * * *
76809414 GCTCAACTCACCTCTCGCAATATGAGTTG--GTTTTTGAAACT-TAATTTGAAAAGA-AGATTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATATAAATTGAAAAAACAGA-ATT
* * * *
76809475 GAAAATACCTCGCCATGTGACCCGAG
65 GAAAATACCT--CAACGTGTCCTGAG
76809501 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATATAAATTGAAAAAACAGAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATATAAATTGAAAAAACAGAATTG
*
76809566 AAAATACCTCAACGTGTGCTGAG
66 AAAATACCTCAACGTGTCCTGAG
** *
76809589 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAGCAGAAATTGAAAAGCAA-A-
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTT-AAAAATATAAATTGAAAA--AACAG
* * *
76809652 AATTGAAAATACTTCAGCGTGCCCTGAG
61 AATTGAAAATACCTCAACGTGTCCTGAG
* * * * *
76809680 ACTCAACTCACCTCTTGCAATATGAGTT-AATTTTTGAAGAATATAAATTGAAAAAACAGAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATATAAATTGAAAAAACAG-AATT
* *
76809744 GAAAATACCTCAGCATGTCCTGAG
65 GAAAATACCTCAACGTGTCCTGAG
*
76809768 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
76809805 TGAAAGACAG
Statistics
Matches: 321, Mismatches: 51, Indels: 37
0.78 0.12 0.09
Matches are distributed among these distances:
85 2 0.01
86 8 0.02
87 69 0.21
88 124 0.39
89 16 0.05
90 31 0.10
91 68 0.21
92 1 0.00
93 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (88 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATATAAATTGAAAAAACAGAATTG
AAAATACCTCAACGTGTCCTGAG
Found at i:76809645 original size:14 final size:14
Alignment explanation
Indices: 76809626--76809660 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
76809616 TGATTTTTTT
*
76809626 TTGAAAAGCAGAAA
1 TTGAAAAGCAAAAA
76809640 TTGAAAAGCAAAAA
1 TTGAAAAGCAAAAA
76809654 TTGAAAA
1 TTGAAAA
76809661 TACTTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAAAAA
Found at i:76809703 original size:179 final size:178
Alignment explanation
Indices: 76809375--76809824 Score: 558
Period size: 179 Copynumber: 2.5 Consensus size: 178
76809365 AACAGACATT
* * **
76809375 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAACCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCA--ACGTGTACTGAGGCTCAACTCACCTCTCGCAATATGAG
* ** * **
76809440 TTG---GTTTTTGAAA-CTTAATTTGAAAAGAAGATTTTGAAAATACCTCGCCATGTGACCCGAG
64 TTGATTTTTTTTGAAAGCAGAAATTGAAAAGAAGAAATTGAAAATACCTCGCCA-GTGACCCGAG
* * *
76809501 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAATATAAATTGA
128 ACTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGAAAAATATAAATTGA
*
76809553 AAAAACAG-AATTGAAAATACCTCAACGTGTGCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTACTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
76809617 GATTTTTTTTTGAAAAGCAGAAATTGAAAAGCAA-AAATTGAAAATACTTCAG-C-GTG-CCCTG
66 GA-TTTTTTTTG-AAAGCAGAAATTGAAAAG-AAGAAATTGAAAATACCTC-GCCAGTGACCC-G
* *
76809678 AGACTCAACTCACCTCTTGCAATATGAGTTAATTTTTGAAGAATATAAATTGA
126 AGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAATATAAATTGA
* * * *
76809731 AAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTACTGAGGCTCAACTCACCTCTCGCAATATGAGTT
76809796 GATTTTTTTTGAAAGACAGAAATTGAAAA
66 GATTTTTTTTGAAAG-CAGAAATTGAAAA
76809825 TACCTCAACG
Statistics
Matches: 240, Mismatches: 21, Indels: 22
0.85 0.07 0.08
Matches are distributed among these distances:
175 37 0.15
177 19 0.08
178 61 0.25
179 92 0.38
180 3 0.01
181 25 0.10
182 3 0.01
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (178 bp):
AAAAACAGAAATTGAAAATACCTCAACGTGTACTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTTGAAAGCAGAAATTGAAAAGAAGAAATTGAAAATACCTCGCCAGTGACCCGAGACT
CAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAATATAAATTGA
Found at i:76809866 original size:76 final size:76
Alignment explanation
Indices: 76809735--76809878 Score: 216
Period size: 76 Copynumber: 1.9 Consensus size: 76
76809725 AATTGAAAAA
* *
76809735 ACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATT
1 ACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGAAT
76809800 TTTTTTGAAAG
66 TTTTTTGAAAG
* * ** * *
76809811 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGAAT
1 ACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGAAT
76809876 TTT
66 TTT
76809879 GAAAACAGGA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
76 60 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (76 bp):
ACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGAAT
TTTTTTGAAAG
Found at i:76810745 original size:44 final size:40
Alignment explanation
Indices: 76810684--76810776 Score: 98
Period size: 40 Copynumber: 2.2 Consensus size: 40
76810674 CGCCCTCTCA
76810684 AGTTTTCATCCTAATCTTTTGTGTTAATCAAGATGCCCTTTTCG
1 AGTTTTCATCCTAATCTTTT-T-TT--TCAAGATGCCCTTTTCG
* * *
76810728 AGTTTTCA-CCTTGATCTTTTTTTTTAGGATGCCCTTTTCG
1 AGTTTTCATCC-TAATCTTTTTTTTCAAGATGCCCTTTTCG
*
76810768 GGTTTTCAT
1 AGTTTTCAT
76810777 ATTGATTTTC
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
40 22 0.51
42 2 0.05
43 3 0.07
44 16 0.37
ACGTcount: A:0.16, C:0.19, G:0.15, T:0.49
Consensus pattern (40 bp):
AGTTTTCATCCTAATCTTTTTTTTCAAGATGCCCTTTTCG
Found at i:76810773 original size:40 final size:40
Alignment explanation
Indices: 76810715--76810792 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
76810705 TGTTAATCAA
*
76810715 GATGCCCTTTTCGAGTTTTCACCTTGATCTTT-TTTTTTAG
1 GATGCCCTTTTCGAGTTTTCACATTGAT-TTTCTTTTTTAG
* *
76810755 GATGCCCTTTTCGGGTTTTCATATTGATTTTCTTTTTT
1 GATGCCCTTTTCGAGTTTTCACATTGATTTTCTTTTTT
76810793 CAAGCATAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.09
40 31 0.91
ACGTcount: A:0.12, C:0.18, G:0.15, T:0.55
Consensus pattern (40 bp):
GATGCCCTTTTCGAGTTTTCACATTGATTTTCTTTTTTAG
Found at i:76821247 original size:83 final size:83
Alignment explanation
Indices: 76821108--76821272 Score: 285
Period size: 83 Copynumber: 2.0 Consensus size: 83
76821098 CACGGAGCTG
* * *
76821108 GATGAGAAGAATAAGATTCAAGGTGCAAGACCTAGTGGAGTGACATCTAGAGGTAGACCACCGAG
1 GATGAGAAGAATAAGATGCAAGGTGCAAGACCTAGTGGAATGACAGCTAGAGGTAGACCACCGAG
*
76821173 AATTTTAGGAGGCAGGGT
66 AATTTCAGGAGGCAGGGT
76821191 GATGAGAAGAATAAGATGCAAGGTGCAAGACCTAGTGGAATGACAGCTAGAGGTAGACCACCGAG
1 GATGAGAAGAATAAGATGCAAGGTGCAAGACCTAGTGGAATGACAGCTAGAGGTAGACCACCGAG
*
76821256 AATTTCAGGAGGTAGGG
66 AATTTCAGGAGGCAGGG
76821273 GTGGTAGTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 77 1.00
ACGTcount: A:0.36, C:0.13, G:0.33, T:0.18
Consensus pattern (83 bp):
GATGAGAAGAATAAGATGCAAGGTGCAAGACCTAGTGGAATGACAGCTAGAGGTAGACCACCGAG
AATTTCAGGAGGCAGGGT
Found at i:76824672 original size:70 final size:70
Alignment explanation
Indices: 76824585--76824725 Score: 255
Period size: 70 Copynumber: 2.0 Consensus size: 70
76824575 ATTATTAAAT
*
76824585 AGGGATCAACATGAGACATGGTGAAATATGATAGGCTAATTTTAAAGGGCCTATTAGTGCATGTC
1 AGGGATCAACATAAGACATGGTGAAATATGATAGGCTAATTTTAAAGGGCCTATTAGTGCATGTC
76824650 AACAC
66 AACAC
* *
76824655 AGGGATCAATATAAGACATGGTGAAATATGATAGGCTAATTTTAAAGGGCTTATTAGTGCATGTC
1 AGGGATCAACATAAGACATGGTGAAATATGATAGGCTAATTTTAAAGGGCCTATTAGTGCATGTC
76824720 AACAC
66 AACAC
76824725 A
1 A
76824726 AGGGTAGACT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (70 bp):
AGGGATCAACATAAGACATGGTGAAATATGATAGGCTAATTTTAAAGGGCCTATTAGTGCATGTC
AACAC
Found at i:76826404 original size:29 final size:29
Alignment explanation
Indices: 76826369--76826442 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
76826359 GTTGTGAGAT
* *
76826369 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
76826398 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
76826427 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76826443 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:76828156 original size:35 final size:36
Alignment explanation
Indices: 76828092--76828163 Score: 137
Period size: 35 Copynumber: 2.0 Consensus size: 36
76828082 TCTGTAAAAG
76828092 TAAAAAGGGTTTGGCTAGGCTTAAGATATGAATAAA
1 TAAAAAGGGTTTGGCTAGGCTTAAGATATGAATAAA
76828128 TAAAAAGGGTTTGGCTA-GCTTAAGATATGAATAAA
1 TAAAAAGGGTTTGGCTAGGCTTAAGATATGAATAAA
76828163 T
1 T
76828164 TCGATAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 19 0.53
36 17 0.47
ACGTcount: A:0.42, C:0.06, G:0.24, T:0.29
Consensus pattern (36 bp):
TAAAAAGGGTTTGGCTAGGCTTAAGATATGAATAAA
Found at i:76828693 original size:48 final size:46
Alignment explanation
Indices: 76828581--76828744 Score: 163
Period size: 46 Copynumber: 3.5 Consensus size: 46
76828571 TTTGTGTGCT
* *
76828581 AGTGTAAGACATGTCTAGGACATGCATCAGCCATAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAGAGTATGAGAGCC
* * *
76828627 AGTGTAAGACATGCCTGGGACATGCATCAGCCCCGAGATATTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CCAGAG-TA-TGAGAGCC
* * * ** *
76828675 AGTGTAAGATATGTCTGGGACATGAATC-GGCATTGAG-GCGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCA--GAGTATGAGAGCC
76828721 AGTGTAAGACATGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
76828745 GCGTCAGCTT
Statistics
Matches: 97, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
45 1 0.01
46 55 0.57
47 5 0.05
48 34 0.35
49 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCAGAGTATGAGAGCC
Found at i:76831403 original size:17 final size:16
Alignment explanation
Indices: 76831375--76831427 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
76831365 TTTGGTTCGC
76831375 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
76831391 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
76831408 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
76831424 TGTA
1 TGTA
76831428 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:76831492 original size:44 final size:45
Alignment explanation
Indices: 76831408--76831498 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
76831398 GGATTAGAGG
* * *
76831408 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
76831453 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
76831497 TG
1 TG
76831499 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:76833307 original size:104 final size:104
Alignment explanation
Indices: 76833171--76834016 Score: 1451
Period size: 104 Copynumber: 8.1 Consensus size: 104
76833161 ATCAGGCACC
* * * * * * * * *
76833171 AACCACTAAGTTAAATACTCGAGTTTATGCGAAAATTA-CAGATCAAAAACAAACTCCTGCTACA
1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGA-ATCAAAATCAAACTCATTCTACA
* * *
76833235 ATGTAAGAGCTTTGATTAATTATTTACATAAAAATCTTGA
65 ATGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA
*
76833275 AACCTCTAAGTTAAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
* * *
76833340 TGTAAGAGCTTTGATTCCTTGTTTACATGAAAATCTTGA
66 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA
* *
76833379 AACCTCTAAGTTAAATATTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
76833444 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA
66 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA
76833483 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
76833548 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA
66 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA
76833587 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
76833652 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA
66 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA
76833691 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
*
76833756 TGTAAGAGCTTTGATTCATTATTTACATGAAAATTTTTA
66 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA
76833795 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
*
76833860 TGTAAGAGCTTTGATTCATTATTTACATGAAAATTTTTA
66 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA
76833899 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
1 AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
* * *
76833964 TGTAAGAGCTTTGATTCATTACTTACAAGAAAATCTTGA
66 TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA
* *
76834003 AGCCTCTAAATTTA
1 AACCTCTAAGTTTA
76834017 CAACACATTG
Statistics
Matches: 716, Mismatches: 25, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
104 715 1.00
105 1 0.00
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33
Consensus pattern (104 bp):
AACCTCTAAGTTTAATACTCAAGTTTAAGCGAAAATGATGAATCAAAATCAAACTCATTCTACAA
TGTAAGAGCTTTGATTCATTATTTACATGAAAATCTTTA
Found at i:76835399 original size:12 final size:12
Alignment explanation
Indices: 76835382--76835423 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
76835372 AATTTTTCTC
76835382 CCCTTT-CCTCTT
1 CCCTTTACC-CTT
76835394 CCCTTTACCCTT
1 CCCTTTACCCTT
*
76835406 CCCTTTGCCCTTT
1 CCCTTTACCC-TT
76835419 CCCTT
1 CCCTT
76835424 GGGTTGCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 18 0.67
13 9 0.33
ACGTcount: A:0.02, C:0.50, G:0.02, T:0.45
Consensus pattern (12 bp):
CCCTTTACCCTT
Found at i:76845672 original size:39 final size:40
Alignment explanation
Indices: 76845577--76845760 Score: 177
Period size: 40 Copynumber: 4.7 Consensus size: 40
76845567 TTGGATGATG
* *
76845577 TCCGGGCTAAGTCCCAAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
76845615 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* *
76845656 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
76845695 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
76845734 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
76845761 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 14, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
39 52 0.43
40 59 0.48
41 10 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:76845782 original size:79 final size:79
Alignment explanation
Indices: 76845629--76845793 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
76845619 GGACTAAGAT
* ** *
76845629 CCGAAGGCATTCGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTCGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
76845694 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
76845708 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTCGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
76845770 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
76845787 CCGAAGG
1 CCGAAGG
76845794 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.04
79 45 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:76854186 original size:17 final size:18
Alignment explanation
Indices: 76854159--76854192 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
76854149 AATTAAATAT
76854159 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
76854177 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
76854193 TAAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:76865318 original size:14 final size:16
Alignment explanation
Indices: 76865299--76865331 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
76865289 GGCGGGGTTG
76865299 TTAGTT-GTTCT-AAA
1 TTAGTTGGTTCTGAAA
76865313 TTAGTTGGTTCTGAAA
1 TTAGTTGGTTCTGAAA
76865329 TTA
1 TTA
76865332 CCTTGTCGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 5 0.29
16 6 0.35
ACGTcount: A:0.27, C:0.06, G:0.18, T:0.48
Consensus pattern (16 bp):
TTAGTTGGTTCTGAAA
Found at i:76874226 original size:45 final size:45
Alignment explanation
Indices: 76874162--76874262 Score: 150
Period size: 45 Copynumber: 2.2 Consensus size: 45
76874152 TGCATTACGA
* *
76874162 TTGAAGTCATTCCCATATTC-CTTGAGGGACAAAGCTTGAGCCTGG
1 TTGAAGTCATTCCCATATTCGC-TAAGGGACAAAGCTCGAGCCTGG
*
76874207 TTGAAGTCATTCCCATATTCGCTAAGGGACAGAGCTCGAGCCTGG
1 TTGAAGTCATTCCCATATTCGCTAAGGGACAAAGCTCGAGCCTGG
*
76874252 TTGAACTCATT
1 TTGAAGTCATT
76874263 GCCACCGAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
45 50 0.98
46 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.29
Consensus pattern (45 bp):
TTGAAGTCATTCCCATATTCGCTAAGGGACAAAGCTCGAGCCTGG
Found at i:76879994 original size:29 final size:29
Alignment explanation
Indices: 76879960--76880033 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
76879950 TAATCAACCG
*
76879960 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
76879989 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
76880018 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
76880034 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:76889776 original size:29 final size:29
Alignment explanation
Indices: 76889742--76889815 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
76889732 TAATCAACCG
*
76889742 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
76889771 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
76889800 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
76889816 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:76898798 original size:30 final size:30
Alignment explanation
Indices: 76898764--76898824 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76898754 TCCTTAACTC
76898764 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
76898794 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
76898824 A
1 A
76898825 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:76899899 original size:25 final size:24
Alignment explanation
Indices: 76899865--76899921 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
76899855 ATCTCTTCCC
*
76899865 AAAATCACATCAAATTCAT-CAAAT
1 AAAATAACATCAAA-TCATCCAAAT
76899889 GAAAATAACATCAAATCATCCAAAT
1 -AAAATAACATCAAATCATCCAAAT
76899914 AATAATAA
1 AA-AATAA
76899922 TCTTTTACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 6 0.21
25 23 0.79
ACGTcount: A:0.58, C:0.18, G:0.02, T:0.23
Consensus pattern (24 bp):
AAAATAACATCAAATCATCCAAAT
Found at i:76903746 original size:12 final size:12
Alignment explanation
Indices: 76903729--76903753 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76903719 ATGTAAGTGA
76903729 TCTTGATGATTT
1 TCTTGATGATTT
76903741 TCTTGATGATTT
1 TCTTGATGATTT
76903753 T
1 T
76903754 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:76904557 original size:46 final size:46
Alignment explanation
Indices: 76904445--76904669 Score: 197
Period size: 46 Copynumber: 4.8 Consensus size: 46
76904435 CGTAATTTGT
* *
76904445 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCTACATTGAGACG
1 GTGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGACATCGAGACG
* * * *
76904492 AGTGCCAATGTAAG-GCATGTCTGGGACATGCATCGACCTCGGGACG
1 -GTGCCAGTGTAAGACCATGTCTGGGACATGCATCGACATCGAGACG
* * * *
76904538 TTAGCCAGTGTAAGA-CATGTCTAGGACATGCATCGGCCTCGAGAC-
1 GT-GCCAGTGTAAGACCATGTCTGGGACATGCATCGACATCGAGACG
* * * *
76904583 ATGTCAGGGTAAGACCATGTCTGGGACATGGGATCAGCACATC-AGTACGG
1 GTGCCAGTGTAAGACCATGTCTGGGACAT-GCATC-G-ACATCGAG-AC-G
* *
76904633 GAGCTAGTGTAAGACCATGTCTGGGACATTGCATCGA
1 GTGCCAGTGTAAGACCATGTCTGGGACA-TGCATCGA
76904670 AAACTTAACC
Statistics
Matches: 143, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
44 10 0.07
45 15 0.10
46 54 0.38
47 17 0.12
48 18 0.13
49 1 0.01
50 27 0.19
51 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (46 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATGCATCGACATCGAGACG
Found at i:76911213 original size:12 final size:12
Alignment explanation
Indices: 76911196--76911220 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76911186 ATGTAAGTGA
76911196 TCTTGATGATTT
1 TCTTGATGATTT
76911208 TCTTGATGATTT
1 TCTTGATGATTT
76911220 T
1 T
76911221 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:76912045 original size:46 final size:45
Alignment explanation
Indices: 76911935--76912152 Score: 183
Period size: 46 Copynumber: 4.6 Consensus size: 45
76911925 AGTAATTTGT
* *
76911935 GTGCCAGTGTAAGACCATGTCTGGGACATGGCAACGGCATTGAGACAA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGA-AA
*
76911983 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG-AA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGAAA
* *
76912027 GTAAGCCAGTGTAAGACATGTCTAGGACATGCATCGGC-TACGAGACA
1 GT--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGAAA
** * * *
76912074 -TGTTAGTGCAAGACCATTTCTGGGACATGGCATCAGCA-CGTAAGTACAA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCG--AG-A-AA
* *
76912123 GAGCTAGTGTAAGACCATGTCTGGGACATG
1 GTGCCAGTGTAAGA-CATGTCTGGGACATG
76912153 GAATCAGCAC
Statistics
Matches: 142, Mismatches: 16, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
44 13 0.09
45 15 0.11
46 56 0.39
47 17 0.12
48 15 0.11
49 2 0.01
50 24 0.17
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (45 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGAAA
Found at i:76912137 original size:50 final size:50
Alignment explanation
Indices: 76912077--76912207 Score: 199
Period size: 50 Copynumber: 2.6 Consensus size: 50
76912067 CGAGACATGT
* * * *
76912077 TAGTGCAAGACCATTTCTGGGACATGGCATCAGCACGTAAGTACAAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATAAATACAAGAGC
* *
76912127 TAGTGTAAGACCATGTCTGGGACATGGAATCAGCACATAAATACGAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATAAATACAAGAGC
*
76912177 TAGTGTAAGACCATGTCTGGGACATTGCATC
1 TAGTGTAAGACCATGTCTGGGACATGGCATC
76912208 GGCAACTTAA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 73 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (50 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATAAATACAAGAGC
Found at i:76918269 original size:40 final size:40
Alignment explanation
Indices: 76918171--76918433 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
76918161 TCCTCGTTCA
* * * ** *
76918171 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
76918210 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
76918250 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
76918290 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
76918330 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
76918370 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
76918410 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
76918434 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:76926219 original size:40 final size:40
Alignment explanation
Indices: 76926121--76926423 Score: 344
Period size: 40 Copynumber: 7.6 Consensus size: 40
76926111 TCCTCGTTCA
* * * * *
76926121 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
76926160 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
76926200 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
76926240 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
76926280 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
76926320 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
76926360 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
76926400 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
76926424 CAGCATTCAA
Statistics
Matches: 235, Mismatches: 23, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
39 39 0.17
40 184 0.78
41 12 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:76926432 original size:41 final size:41
Alignment explanation
Indices: 76926355--76926432 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
76926345 TTTGTATCTC
* * *
76926355 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
76926396 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
76926433 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:76939152 original size:27 final size:27
Alignment explanation
Indices: 76939117--76939170 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
76939107 TGTTATGTGA
* *
76939117 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
76939144 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
76939171 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:76939502 original size:49 final size:49
Alignment explanation
Indices: 76939430--76939653 Score: 238
Period size: 49 Copynumber: 4.5 Consensus size: 49
76939420 TGAGGTCTTG
* *
76939430 TGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATACTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATACTTGGTCACA
* * * * *
76939479 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTTGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGAT-AC-TTGGTCACA
* * * *
76939530 TGTGTAGTACTAAGTGCAGGCAACTACGTGTATCAACGG-T--TAGGCCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-C--CGGATACTTGGTCACA
* * *
76939579 TGTGTAGTACTAAGTGCATGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATACTTGGTCACA
* *
76939628 TATGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
76939654 TGCATACCAT
Statistics
Matches: 143, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
46 3 0.02
47 1 0.01
48 1 0.01
49 96 0.67
50 2 0.01
51 36 0.25
52 1 0.01
53 1 0.01
54 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATACTTGGTCACA
Found at i:76939703 original size:149 final size:149
Alignment explanation
Indices: 76939429--76939704 Score: 369
Period size: 149 Copynumber: 1.9 Consensus size: 149
76939419 GTGAGGTCTT
* *
76939429 GTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATACTTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATATGTAGTACTAAGT
* * * * * * *
76939494 GCAGGCTACTATGCGTACCCGTTAACTTTGATCACATGTGTAGTACTAAGTGCAGGCAACTACGT
66 GCAGGCTACTATGCATACCCATTAACTTGGATCACAAGTGTAGAAATAAGTGCAGACAACTACGT
76939559 GTATCAACGGTTAGGCCAC
131 GTATCAACGGTTAGGCCAC
* *
76939578 GTGTGTAGTACTAAGTGCATGCTACTACGTGTACCGGATAATTGGTCGCATATGTAGTACTAAGT
1 GTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATATGTAGTACTAAGT
* * * *
76939643 GTAGGCTACTATGCATA-CCATATAGCATTGGCT-ACAAGTGT-GAAAATATGTGCAGACAACTA
66 GCAGGCTACTATGCATACCCAT-TAAC-TTGGATCACAAGTGTAG-AAATAAGTGCAGACAACTA
76939705 AGTATCAGTT
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
148 4 0.04
149 101 0.93
150 4 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (149 bp):
GTGTGTAGTACAAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATATGTAGTACTAAGT
GCAGGCTACTATGCATACCCATTAACTTGGATCACAAGTGTAGAAATAAGTGCAGACAACTACGT
GTATCAACGGTTAGGCCAC
Found at i:76942817 original size:15 final size:15
Alignment explanation
Indices: 76942797--76942848 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
76942787 ATATCTTAGG
76942797 TTTCTTTATTTTGGA
1 TTTCTTTATTTTGGA
* *
76942812 TTTCTTTATTCTGGG
1 TTTCTTTATTTTGGA
* *
76942827 TTTCTGTATCTTGGA
1 TTTCTTTATTTTGGA
76942842 TTT-TTTA
1 TTTCTTTA
76942849 ACTCGGTTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 3 0.10
15 27 0.90
ACGTcount: A:0.12, C:0.10, G:0.15, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTTTGGA
Found at i:76948882 original size:49 final size:50
Alignment explanation
Indices: 76948810--76949034 Score: 197
Period size: 49 Copynumber: 4.5 Consensus size: 50
76948800 TGAGGTCACG
*
76948810 TGTGTAGTACTAATTGCAGGCTACTACGTGTACCGGATACTT-GGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATACTTAGGTCGTA
** * * * **
76948859 TGTGTAGTACTAAAAGCAGGCTACTATGCGTACCCGATAACTTCGAGCACG--
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGAT-ACTT--AGGTCGTA
* * * * *** * *
76948910 TGTGTAGTACTAAGTGCAGGCTATTATGTGTATCAGACGGTTAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATACTTAGGTCGTA
* * * * *
76948960 TGTTTAGTACTAAGTGTAGGCTACTACGTGTACCGAATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATACTTAGGTCGTA
76949009 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
76949035 TGCGTACCAG
Statistics
Matches: 136, Mismatches: 34, Indels: 12
0.75 0.19 0.07
Matches are distributed among these distances:
48 3 0.02
49 61 0.45
50 38 0.28
51 31 0.23
53 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATACTTAGGTCGTA
Found at i:76957184 original size:33 final size:33
Alignment explanation
Indices: 76957128--76957193 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
76957118 GTTTCAATTG
* * **
76957128 GGATTTAGCCTGGACTGGTAATCCTTATTGACT
1 GGATTTAGCCTGGACTAGCAATCCAGATTGACT
76957161 GGATTTAGCCTGGACTAGCAATCCAGATTGACT
1 GGATTTAGCCTGGACTAGCAATCCAGATTGACT
76957194 CAAAAGGGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (33 bp):
GGATTTAGCCTGGACTAGCAATCCAGATTGACT
Found at i:76962282 original size:87 final size:87
Alignment explanation
Indices: 76962136--76962326 Score: 373
Period size: 87 Copynumber: 2.2 Consensus size: 87
76962126 CACCACAAAA
*
76962136 ATTGCAACGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGACATAT
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGACATAT
76962201 ATATATGTGGCGAAGCCATCAG
66 ATATATGTGGCGAAGCCATCAG
76962223 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGACATAT
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGACATAT
76962288 ATATATGTGGCGAAGCCATCAG
66 ATATATGTGGCGAAGCCATCAG
76962310 ATTGCAGCGAGGCTGCC
1 ATTGCAGCGAGGCTGCC
76962327 TTGAACCTTG
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 103 1.00
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (87 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATATAGATATTGTGGCTAGACATAT
ATATATGTGGCGAAGCCATCAG
Found at i:76966686 original size:99 final size:99
Alignment explanation
Indices: 76966512--76966708 Score: 367
Period size: 99 Copynumber: 2.0 Consensus size: 99
76966502 CCATAGAGAC
76966512 ACACTTGGTCTAATAAAGCCTCTATCCAATAACTCTTGAATTTGGGCTTTCAGCTCCACCAACTC
1 ACACTTGGTCTAATAAAGCCTCTATCCAATAACTCTTGAATTTGGGCTTTCAGCTCCACCAACTC
*
76966577 CTTCGGTGCCATCCTATAGGGTGCAATGGACACT
66 CTTCGGTGCCATCCTATAAGGTGCAATGGACACT
*
76966611 ACACTTGGTCTAATAAAGCCTCTATCCAATAACTCTTGAATTTGGGCTTTTAGCTCCACCAACTC
1 ACACTTGGTCTAATAAAGCCTCTATCCAATAACTCTTGAATTTGGGCTTTCAGCTCCACCAACTC
*
76966676 CTTCGTTGCCATCCTATAAGGTGCAATGGACAC
66 CTTCGGTGCCATCCTATAAGGTGCAATGGACAC
76966709 CGGTGCCATT
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
99 95 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (99 bp):
ACACTTGGTCTAATAAAGCCTCTATCCAATAACTCTTGAATTTGGGCTTTCAGCTCCACCAACTC
CTTCGGTGCCATCCTATAAGGTGCAATGGACACT
Found at i:76976179 original size:16 final size:16
Alignment explanation
Indices: 76976108--76976170 Score: 83
Period size: 16 Copynumber: 3.9 Consensus size: 16
76976098 CGTTTGGTTC
*
76976108 ACTGGAATGGAATATG-
1 ACTGTAATGGAATA-GA
76976124 ACTGTAATGGAATAGA
1 ACTGTAATGGAATAGA
*
76976140 ACTATAATGGAATAGA
1 ACTGTAATGGAATAGA
*
76976156 GCTGTAATGGAATAG
1 ACTGTAATGGAATAG
76976171 GGCTGTAATC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
15 1 0.02
16 41 0.98
ACGTcount: A:0.41, C:0.06, G:0.27, T:0.25
Consensus pattern (16 bp):
ACTGTAATGGAATAGA
Found at i:76979834 original size:48 final size:48
Alignment explanation
Indices: 76979779--76979875 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
76979769 AGGCAATTTT
76979779 ACTGCATAGGCTTGTAATGGAATAAGCCTGTAATAGGGCATTCCATTC
1 ACTGCATAGGCTTGTAATGGAATAAGCCTGTAATAGGGCATTCCATTC
76979827 ACTGCATAGGCTTGTAATGGAATAAGCCTGTAATAGGGCATTCCATTC
1 ACTGCATAGGCTTGTAATGGAATAAGCCTGTAATAGGGCATTCCATTC
76979875 A
1 A
76979876 ACCAAACAGA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (48 bp):
ACTGCATAGGCTTGTAATGGAATAAGCCTGTAATAGGGCATTCCATTC
Found at i:76986073 original size:27 final size:27
Alignment explanation
Indices: 76986043--76986220 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
76986033 ATATTGAGCC
* * * *
76986043 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
76986070 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76986097 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
76986125 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
76986152 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
76986179 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
76986206 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76986221 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:76986182 original size:82 final size:81
Alignment explanation
Indices: 76986064--76986219 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
76986054 TGCTATATAA
* *
76986064 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
76986129 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
76986146 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
76986210 CACTTAGTGC
65 CACTTAGTGC
76986220 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:76986791 original size:13 final size:13
Alignment explanation
Indices: 76986773--76986797 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76986763 TACTAAATTT
76986773 TCATGGATTCAAG
1 TCATGGATTCAAG
76986786 TCATGGATTCAA
1 TCATGGATTCAA
76986798 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:76995930 original size:46 final size:46
Alignment explanation
Indices: 76995880--76996054 Score: 314
Period size: 46 Copynumber: 3.8 Consensus size: 46
76995870 TGGTTGAGCA
76995880 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
76995926 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
76995972 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76996018 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76996055 GCGGGTTACA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 125 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76996906 original size:42 final size:42
Alignment explanation
Indices: 76996836--76997002 Score: 199
Period size: 42 Copynumber: 4.0 Consensus size: 42
76996826 AAAAATATTT
** * *
76996836 GAGATAGCTTCGGCTATTAATTGACACTTAGTGTGCAAGATC
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
* * *
76996878 GGGATAGCTTCGGCTATGCATTGGCACTTAATGTTCGAGATC
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
* * * *
76996920 AAGATAGCTTCGACTATGCATTGGCACTTAGTGTGCGTGATT
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
* * * *
76996962 GAGTTAGCTTCGGCTATGTATTGGAACTTAGTGTGTGAGAT
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGAT
76997003 TCCTGAGTAA
Statistics
Matches: 104, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 104 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (42 bp):
GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
Found at i:76997104 original size:32 final size:31
Alignment explanation
Indices: 76997061--76997131 Score: 115
Period size: 32 Copynumber: 2.3 Consensus size: 31
76997051 ATGTGATTGA
*
76997061 GTATGAGATTGGTACGAGATGGTACAGGTAT
1 GTATGAAATTGGTACGAGATGGTACAGGTAT
*
76997092 GTATAGAAATTGGTAGGAGATGGTACAGGTAT
1 GTAT-GAAATTGGTACGAGATGGTACAGGTAT
76997124 GTATGAAA
1 GTATGAAA
76997132 ATTCAATTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 8 0.22
32 29 0.78
ACGTcount: A:0.34, C:0.04, G:0.34, T:0.28
Consensus pattern (31 bp):
GTATGAAATTGGTACGAGATGGTACAGGTAT
Found at i:76998488 original size:26 final size:26
Alignment explanation
Indices: 76998405--76998559 Score: 202
Period size: 27 Copynumber: 5.8 Consensus size: 26
76998395 AGTGGAGATG
* *
76998405 TTGTAGAATTACCAAAATACCCCTATT
1 TTGTAAAATTACCAAAATA-CCCTAGT
76998432 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATA-CCCTAGT
76998459 TTGTAAAATTACCAAAATACCCTAGT
1 TTGTAAAATTACCAAAATACCCTAGT
*
76998485 TTGTAAAATTACCAAAATACCCTAAT
1 TTGTAAAATTACCAAAATACCCTAGT
* ** * *
76998511 TTGTGAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCCTAG-T
*
76998538 TTGTAAAATTACCAAAGTACCC
1 TTGTAAAATTACCAAAATACCC
76998560 CCGATTTACA
Statistics
Matches: 114, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 52 0.46
27 62 0.54
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (26 bp):
TTGTAAAATTACCAAAATACCCTAGT
Found at i:76998499 original size:53 final size:53
Alignment explanation
Indices: 76998405--76998560 Score: 206
Period size: 53 Copynumber: 2.9 Consensus size: 53
76998395 AGTGGAGATG
* * *
76998405 TTGTAGAATTACCAAAATACCCCTATTTTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCCTAAT
76998459 TTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATA-CCCTAAT
1 TTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAAT
* ** * * *
76998511 TTGTGAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCC
1 TTGTAAAATTACCAAAATACCCTAG-TTTGTAAAATTACCAAAATACCCC
76998561 CGATTTACAG
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
52 27 0.30
53 43 0.47
54 21 0.23
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (53 bp):
TTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAAT
Found at i:77010302 original size:27 final size:27
Alignment explanation
Indices: 77010272--77010429 Score: 210
Period size: 27 Copynumber: 5.9 Consensus size: 27
77010262 AGTGGATAAG
*
77010272 TTGTAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
*
77010299 TTGTAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTAGT
77010326 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* *
77010353 TTGTAAAATTACCAAAATATCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTAGT
* ** **
77010380 TTGTGAAATTACTGAAATA-CCCTCAAC
1 TTGTAAAATTACCAAAATACCCCT-AGT
*
77010407 TTGTAAAATTACCAAAGTACCCC
1 TTGTAAAATTACCAAAATACCCC
77010430 CGATTTACAG
Statistics
Matches: 116, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 4 0.03
27 109 0.94
28 3 0.03
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:77010497 original size:27 final size:27
Alignment explanation
Indices: 77010467--77010546 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 27
77010457 CGTTTTACAA
*
77010467 AATTACCGAAGTACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**
77010494 AATTGTCGAAATATCCC-TGTAGGGTAG
1 AATTACCGAAATA-CCCTTGTAGGGTAG
* * ** *
77010521 GACTACCGATTTACCCTTGGAGGGTA
1 AATTACCGAAATACCCTTGTAGGGTA
77010547 AAATGACTAT
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
26 3 0.07
27 35 0.85
28 3 0.07
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:77015300 original size:30 final size:29
Alignment explanation
Indices: 77015245--77015321 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 29
77015235 TACGAAATAG
* * *
77015245 AGATGACATGAAAACCAAGATAAAGAAGTCC
1 AGAT-ACA-GAAATCCAAAATAAAGAAATCC
77015276 A-ATACAAAGAAATCCAAAATAAAGAAATCC
1 AGATAC--AGAAATCCAAAATAAAGAAATCC
77015306 AGATACAGAAATCCAA
1 AGATACAGAAATCCAA
77015322 GATACAATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
29 12 0.30
30 22 0.55
31 6 0.15
ACGTcount: A:0.57, C:0.17, G:0.13, T:0.13
Consensus pattern (29 bp):
AGATACAGAAATCCAAAATAAAGAAATCC
Found at i:77015327 original size:15 final size:15
Alignment explanation
Indices: 77015254--77015325 Score: 83
Period size: 15 Copynumber: 4.9 Consensus size: 15
77015244 GAGATGACAT
*
77015254 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
* * *
77015269 GAAGTCCAATACAAA
1 GAAATCCAAGATAAA
*
77015284 GAAATCCAAAATAAA
1 GAAATCCAAGATAAA
*
77015299 GAAATCC-AGATACA
1 GAAATCCAAGATAAA
77015313 GAAATCCAAGATA
1 GAAATCCAAGATA
77015326 CAATATCATA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
14 12 0.26
15 35 0.74
ACGTcount: A:0.58, C:0.17, G:0.12, T:0.12
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:77017318 original size:17 final size:18
Alignment explanation
Indices: 77017283--77017318 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
77017273 GGACACAGGG
*
77017283 ACACGCCCGTGTGCCTCA
1 ACACCCCCGTGTGCCTCA
77017301 ACACCCCCGTGT-CCTCA
1 ACACCCCCGTGTGCCTCA
77017318 A
1 A
77017319 GCTGTGTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.19, C:0.47, G:0.17, T:0.17
Consensus pattern (18 bp):
ACACCCCCGTGTGCCTCA
Found at i:77023701 original size:25 final size:24
Alignment explanation
Indices: 77023667--77023754 Score: 99
Period size: 24 Copynumber: 3.6 Consensus size: 24
77023657 TTTGAAAGTC
77023667 CGCACACATAGTGCTCTTAC-TTAT-T
1 CGCACACATAGTGC-C--ACGTTATCT
*
77023692 CGCACACATAGTGCCACGTTTTCT
1 CGCACACATAGTGCCACGTTATCT
* *
77023716 CGCACACATAGTGCCATGTAATCT
1 CGCACACATAGTGCCACGTTATCT
*
77023740 CGCACACATTGTGCC
1 CGCACACATAGTGCC
77023755 GCATAGCCTT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
22 2 0.04
23 3 0.05
24 37 0.66
25 14 0.25
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (24 bp):
CGCACACATAGTGCCACGTTATCT
Found at i:77023747 original size:26 final size:24
Alignment explanation
Indices: 77023691--77023777 Score: 93
Period size: 24 Copynumber: 3.6 Consensus size: 24
77023681 TCTTACTTAT
**
77023691 TCGCACACATAGTGCCACGTTTTC
1 TCGCACACATAGTGCCACGTAATC
*
77023715 TCGCACACATAGTGCCATGTAATC
1 TCGCACACATAGTGCCACGTAATC
* * * **
77023739 TCGCACACATTGTGCCGCATAGCC
1 TCGCACACATAGTGCCACGTAATC
*
77023763 TTGCACACATAGTGC
1 TCGCACACATAGTGC
77023778 TGTATTTTCT
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.25
Consensus pattern (24 bp):
TCGCACACATAGTGCCACGTAATC
Found at i:77025471 original size:194 final size:194
Alignment explanation
Indices: 77025142--77025528 Score: 756
Period size: 194 Copynumber: 2.0 Consensus size: 194
77025132 GGTCCAATAC
77025142 AGTGGTGTGCGGCATTTATGACTGTATAAAGCCTCGTATGGTGCCATCTTGATACTTGATTGGAA
1 AGTGGTGTGCGGCATTTATGACTGTATAAAGCCTCGTATGGTGCCATCTTGATACTTGATTGGAA
77025207 GCTATTGTTGTATGTGAATTCAATCAAAGGTAAATATCGTTCCCACGAACCACTGAACTCGAGAA
66 GCTATTGTTGTATGTGAATTCAATCAAAGGTAAATATCGTTCCCACGAACCACTGAACTCGAGAA
*
77025272 TGCAACATCTCAACATATCTTCGAGTATCTGAATAACTCGTTCAGATTGACCATCTGTCTGGGG
131 TGCAACATCTCAACATATCTTCGAGTATCTGAATAACTCATTCAGATTGACCATCTGTCTGGGG
77025336 AGTGGTGTGCGGCATTTATGACTGTATAAAGCCTCGTATGGTGCCATCTTGATACTTGATTGGAA
1 AGTGGTGTGCGGCATTTATGACTGTATAAAGCCTCGTATGGTGCCATCTTGATACTTGATTGGAA
77025401 GCTATTGTTGTATGTGAATTCAATCAAAGGTAAATATCGTTCCCACGAACCACTGAACTCGAGAA
66 GCTATTGTTGTATGTGAATTCAATCAAAGGTAAATATCGTTCCCACGAACCACTGAACTCGAGAA
*
77025466 TGCAACATCTCAACATATCTTCGAGTATCTGAATAACTTATTCAGATTGACCATCTGTCTGGG
131 TGCAACATCTCAACATATCTTCGAGTATCTGAATAACTCATTCAGATTGACCATCTGTCTGGG
77025529 ATGGAAAGCA
Statistics
Matches: 191, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
194 191 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31
Consensus pattern (194 bp):
AGTGGTGTGCGGCATTTATGACTGTATAAAGCCTCGTATGGTGCCATCTTGATACTTGATTGGAA
GCTATTGTTGTATGTGAATTCAATCAAAGGTAAATATCGTTCCCACGAACCACTGAACTCGAGAA
TGCAACATCTCAACATATCTTCGAGTATCTGAATAACTCATTCAGATTGACCATCTGTCTGGGG
Done.