Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 223 of 290
Found at i:77030760 original size:24 final size:24
Alignment explanation
Indices: 77030703--77030791 Score: 110
Period size: 24 Copynumber: 3.7 Consensus size: 24
77030693 GAATTGAAAG
77030703 TCGCACACATAGTGCTCTTAC-TTAT-
1 TCGCACACATAGTGC-C--ACGTTATC
*
77030728 TCGCACACATAGTGCCACGTTTTC
1 TCGCACACATAGTGCCACGTTATC
* *
77030752 TCGCACACATAGTGCCATGTAATC
1 TCGCACACATAGTGCCACGTTATC
77030776 TCGCACACATAGTGCC
1 TCGCACACATAGTGCC
77030792 GCATAGCCTT
Statistics
Matches: 58, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
22 2 0.03
23 3 0.05
24 38 0.66
25 15 0.26
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (24 bp):
TCGCACACATAGTGCCACGTTATC
Found at i:77047791 original size:45 final size:45
Alignment explanation
Indices: 77047713--77047942 Score: 295
Period size: 45 Copynumber: 5.1 Consensus size: 45
77047703 CGGTATTTTT
* * * *
77047713 CCTGCTAGGCTC-GAGGCCCGATTA-TCATTTCACCGGCATTATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACCGGCATAATAG
* *
77047757 CCTGCTAGGCTTGAAA-GCCCGAATAGTATCTCACCGGCATTATAG
1 CCTGCTAGGC-TCAAAGGCCCGAATAGTATCTCACCGGCATAATAG
* *
77047802 CCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGGCATCATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACC-GGCATAATAG
* * *
77047848 CCTGCTAGGCTCAAAGGTCCGAATAATGTCTCACCGGCATAATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATAATAG
* *
77047893 CCTACTAGGCTCAAAGGCCCGAATAGTGTCTCACCGGCATAATAG
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATAATAG
77047938 CCTGC
1 CCTGC
77047943 NNNNNNNNNN
Statistics
Matches: 165, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
44 14 0.08
45 109 0.66
46 42 0.25
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (45 bp):
CCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATAATAG
Found at i:77047856 original size:91 final size:90
Alignment explanation
Indices: 77047713--77047942 Score: 304
Period size: 91 Copynumber: 2.6 Consensus size: 90
77047703 CGGTATTTTT
* * * *
77047713 CCTGCTAGGCTC-GAGGCCCGATTA-TCATTTCACCGGCATTATAGCCTGCTAGGCTTGAAA-GC
1 CCTGCTAGGCTCAAAGGCCCGAATAGT-ATTTCACCGGCATAATAGCCTGCTAGGC-TCAAAGGC
* *
77047775 CCGAATAGTATCTCACCGGCATTATAG
64 CCGAATAATATCTCACCGGCATAATAG
* *
77047802 CCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGGCATCATAGCCTGCTAGGCTCAAAGGTC
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACC-GGCATAATAGCCTGCTAGGCTCAAAGGCC
*
77047867 CGAATAATGTCTCACCGGCATAATAG
65 CGAATAATATCTCACCGGCATAATAG
* * *
77047893 CCTACTAGGCTCAAAGGCCCGAATAGTGTCTCACCGGCATAATAGCCTGC
1 CCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATAATAGCCTGC
77047943 NNNNNNNNNN
Statistics
Matches: 125, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
89 12 0.10
90 36 0.29
91 77 0.62
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (90 bp):
CCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCC
GAATAATATCTCACCGGCATAATAG
Found at i:77072243 original size:18 final size:20
Alignment explanation
Indices: 77072203--77072252 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
77072193 CCTATCCACG
*
77072203 ACCCCTTGGCGGCAGCTGTGC
1 ACCCCTTGGCGG-AGCTGAGC
77072224 ACCCCTTGGC-G-GCTGAGC
1 ACCCCTTGGCGGAGCTGAGC
77072242 ACCACCTTGGC
1 ACC-CCTTGGC
77072253 CCACTACTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 9 0.33
19 7 0.26
20 1 0.04
21 10 0.37
ACGTcount: A:0.12, C:0.40, G:0.30, T:0.18
Consensus pattern (20 bp):
ACCCCTTGGCGGAGCTGAGC
Found at i:77077998 original size:18 final size:17
Alignment explanation
Indices: 77077971--77078004 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
77077961 CATGTCATTT
77077971 GCCCAAGTGGGCCCACAC
1 GCCCAAGT-GGCCCACAC
*
77077989 GCCCATGTGGCCCACA
1 GCCCAAGTGGCCCACA
77078005 AGGCCCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.44, G:0.26, T:0.09
Consensus pattern (17 bp):
GCCCAAGTGGCCCACAC
Found at i:77082533 original size:27 final size:27
Alignment explanation
Indices: 77082502--77082679 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77082492 TAAATTGTAC
77082502 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
77082529 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77082555 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
77082583 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
77082611 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77082638 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
77082665 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77082680 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:77082616 original size:82 final size:81
Alignment explanation
Indices: 77082503--77082658 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77082493 AAATTGTACA
* *
77082503 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
77082567 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
77082584 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
77082649 TGCGAGTTGA
65 TGCGAATTGA
77082659 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:77082670 original size:82 final size:81
Alignment explanation
Indices: 77082499--77082679 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
77082489 GATTAAATTG
* *
77082499 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
77082564 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
77082580 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
77082644 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
77082662 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
77082680 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:77090596 original size:27 final size:27
Alignment explanation
Indices: 77090565--77090742 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
77090555 TAAATTGTAC
77090565 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
77090592 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77090618 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
77090646 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
77090674 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
77090701 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
77090728 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77090743 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:77090679 original size:82 final size:81
Alignment explanation
Indices: 77090566--77090721 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
77090556 AAATTGTACA
* *
77090566 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
77090630 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
77090647 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
77090712 TGCGAGTTGA
65 TGCGAATTGA
77090722 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:77090733 original size:82 final size:81
Alignment explanation
Indices: 77090562--77090742 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
77090552 GATTAAATTG
* *
77090562 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
77090627 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
77090643 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
77090707 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
77090725 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
77090743 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:77095309 original size:42 final size:42
Alignment explanation
Indices: 77095188--77095351 Score: 179
Period size: 42 Copynumber: 3.9 Consensus size: 42
77095178 TACCATACCA
* * * *
77095188 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTGTCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATTG
* * * **
77095230 ATGCCAATAGCCCAGCTATAGTCTTACACAAAATCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAATCTCATATTG
* *
77095273 ATGCCATATCTCAAATATGGTCTTACACG-AAGTCTCATCA-TG
1 ATGCCATATCCCAGATATGGTCTTACACGTAA-TCTCAT-ATTG
*
77095315 ATGTCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
77095352 GTAACCCTAA
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
41 2 0.02
42 62 0.62
43 36 0.36
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATTG
Found at i:77098135 original size:48 final size:46
Alignment explanation
Indices: 77098035--77098443 Score: 216
Period size: 48 Copynumber: 8.7 Consensus size: 46
77098025 TTATTTTTCT
** *
77098035 GCTAGTGTAAGA-CAT-TCTGGGACAT-GCATCGGCTACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGA-GA-GAGA
* * *
77098080 GCCAGTGTAAGACCATGTCTGGGAAATGGCATCGGCATTGAGACGACA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGA-GAGA
* * * *
77098128 GCTAGTGTAAGA-CATCTCTGAGACAT-GCATCGGCCTCATGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGA-GA-G-AGA
* * * * * *
77098174 GCCAGTGTAAGA-CATGTCTAGGAGAT-GCATCAGCTACGAGAG-GT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TGAGAGAGA
* *
77098218 G-TCAGTGTAAGACCATGTCTAGGACATGGCATCGGAACGTAT-AGAG-GT
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGG--C-T-TGAGAGAGA
* * *
77098266 G-TCAATGTAAGACCATGTCTGGGACATGGCATCGGCATGGATATGTGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTG--A-GAGAGA
* * * ** *
77098316 GCTAGTGTAAGACCATGTATGGGACATGGCGTCGGCCTCGATTTCGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGA--GAGAGA
* * *
77098365 GTTAGTATAAGACCATGTCTGGGACATGGCATCGACTTGATG-GATGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGA-GAGA-GA
* * *
77098412 TCCAATGTAAGACCATGTCTGGGACATGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT
77098444 TAGCATTATA
Statistics
Matches: 287, Mismatches: 54, Indels: 44
0.75 0.14 0.11
Matches are distributed among these distances:
44 10 0.03
45 27 0.09
46 55 0.19
47 51 0.18
48 69 0.24
49 40 0.14
50 33 0.11
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGAGAGA
Found at i:77098181 original size:46 final size:45
Alignment explanation
Indices: 77098038--77098204 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 45
77098028 TTTTTCTGCT
* *
77098038 AGTGTAAGACATTCTGGGACATGCATCGG-CTACATTATGAGAGCC
1 AGTGTAAGACATTCTGGGACATGCATCGGCCT-CATGATGACAGCC
* * * * *
77098083 AGTGTAAGACCATGTCTGGGAAATGGCATCGGCATTGA-GACGACAGCT
1 AGTGTAAGA-CAT-TCTGGGACAT-GCATCGGC-CTCATGATGACAGCC
*
77098131 AGTGTAAGACATCTCTGAGACATGCATCGGCCTCATGATGTA-AGCC
1 AGTGTAAGACAT-TCTGGGACATGCATCGGCCTCATGATG-ACAGCC
* *
77098177 AGTGTAAGACATGTCTAGGAGATGCATC
1 AGTGTAAGACAT-TCTGGGACATGCATC
77098205 AGCTACGAGA
Statistics
Matches: 97, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
45 11 0.11
46 41 0.42
47 21 0.22
48 22 0.23
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATTCTGGGACATGCATCGGCCTCATGATGACAGCC
Found at i:77098388 original size:49 final size:50
Alignment explanation
Indices: 77098273--77098398 Score: 166
Period size: 49 Copynumber: 2.5 Consensus size: 50
77098263 GGTGTCAATG
* *
77098273 TAAGACCATGTCTGGGACATGGCATCGGCATGGATATGTGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGAGCTAGTA
* * * * *
77098323 TAAGACCATGTATGGGACATGGCGTCGGCCTCGAT-T-TCGATAGTTAGTA
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGATATGT-GAGAGCTAGTA
77098372 TAAGACCATGTCTGGGACATGGCATCG
1 TAAGACCATGTCTGGGACATGGCATCG
77098399 ACTTGATGGA
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
48 1 0.02
49 34 0.52
50 31 0.47
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAGAGCTAGTA
Found at i:77103055 original size:16 final size:16
Alignment explanation
Indices: 77103015--77103061 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
77103005 ATCGGCAAAA
*
77103015 GCCGAAATGCCGAAAT
1 GCCGAAAAGCCGAAAT
*
77103031 G-CGAAAAAGTCGAAAT
1 GCCG-AAAAGCCGAAAT
*
77103047 GCCGAAAAGCTGAAA
1 GCCGAAAAGCCGAAA
77103062 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 2 0.08
16 21 0.84
17 2 0.08
ACGTcount: A:0.45, C:0.19, G:0.26, T:0.11
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:77103331 original size:29 final size:28
Alignment explanation
Indices: 77103272--77103381 Score: 123
Period size: 29 Copynumber: 3.9 Consensus size: 28
77103262 GTGAGCATGA
* * * *
77103272 ATATGAATGTGACTGGGTCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
77103300 ATATAAATGTGATTTGGGCCTAATGGGTC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
77103329 ATATATAA-GTGATTTGGGCCTAATGGGCC
1 ATATA-AATGTGA-TTGGGCCTAATGGGCC
* *
77103358 ATATAAATATGATTGGGCTTAATG
1 ATATAAATGTGATTGGGCCTAATG
77103382 TGTAACACCC
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 24 0.34
29 45 0.63
30 2 0.03
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.32
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:77103673 original size:65 final size:65
Alignment explanation
Indices: 77103569--77103697 Score: 231
Period size: 65 Copynumber: 2.0 Consensus size: 65
77103559 ACAGGGATCG
*
77103569 ACTACCCTGACCTTTGCGCATTACGACTTGGATATCTCCTTGTACAGGGCTCCAATACTGATGCA
1 ACTACCCTGACCTTTGCGCATTACGACTTAGATATCTCCTTGTACAGGGCTCCAATACTGATGCA
* *
77103634 ACTACTCTGACCTTTGTGCATTACGACTTAGATATCTCCTTGTACAGGGCTCCAATACTGATGC
1 ACTACCCTGACCTTTGCGCATTACGACTTAGATATCTCCTTGTACAGGGCTCCAATACTGATGC
77103698 CGTTTGTTTC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (65 bp):
ACTACCCTGACCTTTGCGCATTACGACTTAGATATCTCCTTGTACAGGGCTCCAATACTGATGCA
Found at i:77108524 original size:38 final size:38
Alignment explanation
Indices: 77108459--77108559 Score: 112
Period size: 38 Copynumber: 2.6 Consensus size: 38
77108449 ATTTGATGTG
* *
77108459 TATCCGGGCTTAAAGACCCGCAAGCTTCGTGCTAGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTAGTAAAA
* * **
77108499 TATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAAAA
* *
77108537 TATCCGGGATAAATCCAGCAGGC
1 TATCCGGGTTAAATCCCGCAGGC
77108560 CTAGTGCTGG
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 40 0.75
39 5 0.09
40 8 0.15
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAAAA
Found at i:77108620 original size:43 final size:42
Alignment explanation
Indices: 77108569--77108743 Score: 233
Period size: 43 Copynumber: 4.1 Consensus size: 42
77108559 CCTAGTGCTG
77108569 GATGTGTATTCAGGCATTCGTGCCTAGCAGGCTTCGTGCCGGT
1 GATGTGTATTCAGGC-TTCGTGCCTAGCAGGCTTCGTGCCGGT
* * * * *
77108612 GATATGTATTCGGGCCTTCGTGCCTAGCATGCTTCGTGTCAGT
1 GATGTGTATTCAGG-CTTCGTGCCTAGCAGGCTTCGTGCCGGT
77108655 GATGTGTATTCAGGCTTTCGTGCCTAGCAGGCTTCGTGCCGGT
1 GATGTGTATTCAGGC-TTCGTGCCTAGCAGGCTTCGTGCCGGT
* * **
77108698 GATGTGTATTCGGGTCTTCGTGCTTAGCAGGCTTAATGCCGGT
1 GATGTGTATTCAGG-CTTCGTGCCTAGCAGGCTTCGTGCCGGT
77108741 GAT
1 GAT
77108744 TCGAGCAAGG
Statistics
Matches: 115, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
42 1 0.01
43 112 0.97
44 2 0.02
ACGTcount: A:0.14, C:0.22, G:0.31, T:0.33
Consensus pattern (42 bp):
GATGTGTATTCAGGCTTCGTGCCTAGCAGGCTTCGTGCCGGT
Found at i:77108682 original size:86 final size:86
Alignment explanation
Indices: 77108569--77108731 Score: 281
Period size: 86 Copynumber: 1.9 Consensus size: 86
77108559 CCTAGTGCTG
77108569 GATGTGTATTCAGGCATTCGTGCCTAGCAGGCTTCGTGCCGGTGATATGTATTCGGGCCTTCGTG
1 GATGTGTATTCAGGCATTCGTGCCTAGCAGGCTTCGTGCCGGTGATATGTATTCGGGCCTTCGTG
*
77108634 CCTAGCATGCTTCGTGTCAGT
66 CCTAGCAGGCTTCGTGTCAGT
* * *
77108655 GATGTGTATTCAGGCTTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGTCTTCGTG
1 GATGTGTATTCAGGCATTCGTGCCTAGCAGGCTTCGTGCCGGTGATATGTATTCGGGCCTTCGTG
*
77108720 CTTAGCAGGCTT
66 CCTAGCAGGCTT
77108732 AATGCCGGTG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 72 1.00
ACGTcount: A:0.13, C:0.22, G:0.31, T:0.34
Consensus pattern (86 bp):
GATGTGTATTCAGGCATTCGTGCCTAGCAGGCTTCGTGCCGGTGATATGTATTCGGGCCTTCGTG
CCTAGCAGGCTTCGTGTCAGT
Found at i:77108884 original size:29 final size:29
Alignment explanation
Indices: 77108851--77109007 Score: 115
Period size: 29 Copynumber: 5.4 Consensus size: 29
77108841 ATGATTAGAG
*
77108851 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCAAATTCCTTTAACCGA
* ** **
77108880 GCACTATGTGTGCGAGA-T-CAGTAATTGA
1 GCACTATGTGTGC-AAATTCCTTTAACCGA
* *
77108908 GGCACTGTGTGTGCGAATTCCTTTAACCGA
1 -GCACTATGTGTGCAAATTCCTTTAACCGA
* ** **
77108938 GCACTATGTGTGCGAGA-T-CAGTAATTGA
1 GCACTATGTGTGC-AAATTCCTTTAACCGA
* *
77108966 GGCACTGTGTGTGCGAATTCCTTTAACCGA
1 -GCACTATGTGTGCAAATTCCTTTAACCGA
77108996 GCACTATGTGTG
1 GCACTATGTGTG
77109008 TGAGATCGGT
Statistics
Matches: 92, Mismatches: 28, Indels: 16
0.68 0.21 0.12
Matches are distributed among these distances:
28 14 0.15
29 63 0.68
30 15 0.16
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCAAATTCCTTTAACCGA
Found at i:77109028 original size:29 final size:29
Alignment explanation
Indices: 77108880--77109071 Score: 144
Period size: 29 Copynumber: 6.7 Consensus size: 29
77108870 CTTTAACCGA
*
77108880 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAACTGAG
* ** *
77108909 GCACTGTGTGTGCGA-ATTCCTTTAACCGA-
1 GCACTATGTGTGCGAGA-T-CAGTAACTGAG
*
77108938 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAACTGAG
* ** *
77108967 GCACTGTGTGTGCGA-ATTCCTTTAACCGA-
1 GCACTATGTGTGCGAGA-T-CAGTAACTGAG
* * *
77108996 GCACTATGTGTGTGAGATCGGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAACTGAG
* * * *
77109025 GCACTGTGTGTGCGAGTTC-TTCAACCGA-
1 GCACTATGTGTGCGAGATCAGT-AACTGAG
77109053 GCACTATGTGTGCGAGATC
1 GCACTATGTGTGCGAGATC
77109072 GGTCAGTGGG
Statistics
Matches: 125, Mismatches: 29, Indels: 19
0.72 0.17 0.11
Matches are distributed among these distances:
28 32 0.26
29 79 0.63
30 14 0.11
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAACTGAG
Found at i:77109093 original size:58 final size:58
Alignment explanation
Indices: 77108848--77109071 Score: 396
Period size: 58 Copynumber: 3.9 Consensus size: 58
77108838 CGAATGATTA
*
77108848 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
77108906 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
* *
77108964 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGTGAGATCGGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
* *
77109022 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTGTGCGAGATC
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATC
77109072 GGTCAGTGGG
Statistics
Matches: 160, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
57 27 0.17
58 133 0.83
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
Found at i:77114416 original size:47 final size:47
Alignment explanation
Indices: 77114357--77114530 Score: 258
Period size: 47 Copynumber: 3.7 Consensus size: 47
77114347 TCATACATTT
* * * **
77114357 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCTTATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
77114404 CCACATTGGCCATTCGGCCTTATCACACATATGCGTGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
77114451 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
77114498 TCACATTGGCCATTCGGCCTTATCTCATATATG
1 TCACATTGGCCATTCGGCCTTATCACATATATG
77114531 NNNNNNNNNN
Statistics
Matches: 113, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:77114477 original size:22 final size:22
Alignment explanation
Indices: 77114450--77114521 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
77114440 GCTCACATTC
77114450 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
77114472 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
77114496 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
77114519 ATC
1 ATC
77114522 TCATATATGN
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:77118906 original size:40 final size:40
Alignment explanation
Indices: 77118831--77118909 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 40
77118821 TGAGGAATGT
* **
77118831 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTACGACCTGGAATTG
77118871 TATCCGGGCTTAAAGACCCGCAGGCTACGACCTGGAATT
1 TATCCGGGCTTAAAGACCCGCAGGCTACGACCTGGAATT
77118910 ATACCAGGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTACGACCTGGAATTG
Found at i:77120094 original size:16 final size:17
Alignment explanation
Indices: 77120053--77120095 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
77120043 ATGTATCAGC
*
77120053 AAAAGCCGAAATGCCGA
1 AAAAGCTGAAATGCCGA
*
77120070 AAAA-TTGAAATGCC-A
1 AAAAGCTGAAATGCCGA
77120085 AAAAGCTGAAA
1 AAAAGCTGAAA
77120096 GTTTGGCTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 5 0.23
16 13 0.59
17 4 0.18
ACGTcount: A:0.53, C:0.16, G:0.19, T:0.12
Consensus pattern (17 bp):
AAAAGCTGAAATGCCGA
Found at i:77120246 original size:17 final size:18
Alignment explanation
Indices: 77120213--77120248 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
77120203 TATGGGCCAG
77120213 AATGGGCTAAATGGGCCC
1 AATGGGCTAAATGGGCCC
*
77120231 AATGGGCT-ATTGGGCCC
1 AATGGGCTAAATGGGCCC
77120248 A
1 A
77120249 TAATAGGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.25, C:0.22, G:0.33, T:0.19
Consensus pattern (18 bp):
AATGGGCTAAATGGGCCC
Found at i:77120364 original size:29 final size:29
Alignment explanation
Indices: 77120320--77120400 Score: 108
Period size: 29 Copynumber: 2.8 Consensus size: 29
77120310 AATGTGACTA
* * *
77120320 GGCCTAACGGGGCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAAGGTGATTTG
*
77120349 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAAGGTGATTTG
* *
77120378 GGCCTAATGGGCCAGATACAGGT
1 GGCCTAATGGGCCATATAAAGGT
77120401 ATGTGAAATT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAAGGTGATTTG
Found at i:77127595 original size:145 final size:145
Alignment explanation
Indices: 77127397--77127670 Score: 485
Period size: 145 Copynumber: 1.9 Consensus size: 145
77127387 AACTCAAGGT
* * *
77127397 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
*
77127462 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
77127527 ATTTCAAGTTCGCAC
131 ATTTCAAGTTCGCAC
* *
77127542 ACTTACCTTTTCCGCTGTCCAAGATCGACTCGATAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
*
77127607 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAGCCACGCACACTTAGTGCCATG
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATG
77127671 TACTTTAAAC
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
145 122 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (145 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ATTTCAAGTTCGCAC
Found at i:77127716 original size:29 final size:29
Alignment explanation
Indices: 77127653--77127720 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
77127643 TAATCAGCCA
*
77127653 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
77127682 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
77127711 CGCACACTTA
1 CGCACACTTA
77127721 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:77127800 original size:174 final size:174
Alignment explanation
Indices: 77127510--77127869 Score: 693
Period size: 174 Copynumber: 2.1 Consensus size: 174
77127500 ATCAACCGCG
*
77127510 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAGATCGACTCGA
1 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGA
77127575 TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
66 TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
77127640 TAATAATCAGCCACGCACACTTAGTGCCATGTACTTTAAACTCA
131 TAATAATCAGCCACGCACACTTAGTGCCATGTACTTTAAACTCA
*
77127684 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
1 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGA
77127749 TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
66 TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
*
77127814 TAATAATCAGCCACGCACACTTAGTGCCATGTACTTTAAACTCG
131 TAATAATCAGCCACGCACACTTAGTGCCATGTACTTTAAACTCA
77127858 CACACTTAGTGC
1 CACACTTAGTGC
77127870 TGTACAATTT
Statistics
Matches: 183, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 183 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGA
TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
TAATAATCAGCCACGCACACTTAGTGCCATGTACTTTAAACTCA
Found at i:77127861 original size:29 final size:30
Alignment explanation
Indices: 77127827--77127900 Score: 109
Period size: 29 Copynumber: 2.5 Consensus size: 30
77127817 TAATCAGCCA
*
77127827 CGCACACTTAGTGCCATGTAC-TTTAAACT
1 CGCACACTTAGTGCCATGTACATTTAAACC
77127856 CGCACACTTAGTG-C-TGTACAATTTAAACC
1 CGCACACTTAGTGCCATGTAC-ATTTAAACC
77127885 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
77127901 ATCTCATGAC
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.03
29 33 0.82
30 1 0.03
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (30 bp):
CGCACACTTAGTGCCATGTACATTTAAACC
Found at i:77137172 original size:34 final size:34
Alignment explanation
Indices: 77137129--77137198 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
77137119 CAGTAAAGTC
77137129 CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
*
77137163 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
77137197 CA
1 CA
77137199 ATTGCATAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
Found at i:77138017 original size:7 final size:7
Alignment explanation
Indices: 77138005--77138030 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
77137995 GTTACTCCAC
77138005 AAGCCCA
1 AAGCCCA
77138012 AAGCCCA
1 AAGCCCA
77138019 AAGCCCA
1 AAGCCCA
77138026 AAGCC
1 AAGCC
77138031 TACATTCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.42, G:0.15, T:0.00
Consensus pattern (7 bp):
AAGCCCA
Found at i:77140491 original size:28 final size:29
Alignment explanation
Indices: 77140446--77140500 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
77140436 ATAGTATTAT
* *
77140446 TGATTAGAAAAATGAGTTCA-AATAATAG
1 TGATTAAAAAAATGAGTTAATAATAATAG
77140474 TGATTAAAAAAACT-AGTTAATAATAAT
1 TGATTAAAAAAA-TGAGTTAATAATAAT
77140501 TTAGGGACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 16 0.70
29 7 0.30
ACGTcount: A:0.53, C:0.04, G:0.13, T:0.31
Consensus pattern (29 bp):
TGATTAAAAAAATGAGTTAATAATAATAG
Found at i:77144377 original size:42 final size:44
Alignment explanation
Indices: 77144273--77144377 Score: 128
Period size: 44 Copynumber: 2.4 Consensus size: 44
77144263 TGTGTTATCA
* *
77144273 TGTAAGACCACGTTTGGAACGTTGGCGTCGACTTATGATTTACG
1 TGTAAGACCACGTTTGGGACGTTGGCATCGACTTATGATTTACG
* *
77144317 TGTAAGACCACGTCTGGGACGTTGGCATC-A-TATTTGATTT-CG
1 TGTAAGACCACGTTTGGGACGTTGGCATCGACT-TATGATTTACG
77144359 TGTAAGACC-CTGTTTGGGA
1 TGTAAGACCAC-GTTTGGGA
77144378 TAGTGGAATC
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
41 1 0.02
42 19 0.35
43 8 0.15
44 26 0.48
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (44 bp):
TGTAAGACCACGTTTGGGACGTTGGCATCGACTTATGATTTACG
Found at i:77144393 original size:43 final size:43
Alignment explanation
Indices: 77144308--77144413 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 43
77144298 CGTCGACTTA
* *
77144308 TGATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCATATT
1 TGATTTACGTGTAAGACCACGTCTGGGAAGTTGGAATCATATT
*
77144351 TGATTT-CGTGTAAGACC-CTGTTTGGGATAG-TGGAATCGATATT
1 TGATTTACGTGTAAGACCAC-GTCTGGGA-AGTTGGAATC-ATATT
* *
77144394 TGA-TGACATGTAAGACCACG
1 TGATTTACGTGTAAGACCACG
77144414 ATGTACGTGC
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
41 1 0.02
42 25 0.47
43 26 0.49
44 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
TGATTTACGTGTAAGACCACGTCTGGGAAGTTGGAATCATATT
Found at i:77151961 original size:42 final size:43
Alignment explanation
Indices: 77151914--77152029 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 43
77151904 GCATGTGTTA
77151914 TCGTGTAAGACCATGTCTGGGACGTTGGCATCG-TATTTGATT
1 TCGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATT
* * ** *
77151956 TCGTGTATGACCCTGTCTGGGACAATGACATCGATATTTGATT
1 TCGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATT
* * *
77151999 ACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TCGTGTAAGACCATGTCTGGGACGTTGGCAT
77152030 TGTACGAGCT
Statistics
Matches: 60, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
42 28 0.47
43 32 0.53
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (43 bp):
TCGTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATT
Found at i:77153858 original size:20 final size:22
Alignment explanation
Indices: 77153812--77153858 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
77153802 TTACCCTAAA
* *
77153812 CTCCCAAACCTCTTTACTTTCC
1 CTCCCAAAACTCTTTACTTCCC
77153834 C-CCCAAAACT-TTTAC-TCCC
1 CTCCCAAAACTCTTTACTTCCC
77153853 CTCCCA
1 CTCCCA
77153859 TCCTATCCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 4 0.18
20 9 0.41
21 8 0.36
22 1 0.05
ACGTcount: A:0.21, C:0.49, G:0.00, T:0.30
Consensus pattern (22 bp):
CTCCCAAAACTCTTTACTTCCC
Found at i:77155937 original size:29 final size:29
Alignment explanation
Indices: 77155906--77155985 Score: 79
Period size: 31 Copynumber: 2.7 Consensus size: 29
77155896 GAAATGAATC
*
77155906 AAATCAAAATTTCATGTATAAAATTACACA
1 AAATCAAAATTT-ATATATAAAATTACACA
* * *
77155936 AAATTAAAATTTATATATACAATTATACA
1 AAATCAAAATTTATATATAAAATTACACA
* *
77155965 TTAAATCATAATTCATATATA
1 --AAATCAAAATTTATATATA
77155986 TTAAATATCA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 14 0.34
30 11 0.27
31 16 0.39
ACGTcount: A:0.53, C:0.10, G:0.01, T:0.36
Consensus pattern (29 bp):
AAATCAAAATTTATATATAAAATTACACA
Found at i:77158937 original size:42 final size:43
Alignment explanation
Indices: 77158878--77159045 Score: 223
Period size: 42 Copynumber: 4.0 Consensus size: 43
77158868 AGGGTTACTA
*
77158878 AGATTTCGTGTAAGACCATATCTGGGATA-TGGCATCGATATG
1 AGATTTCGTGTAAGACCATAGCTGGGATACTGGCATCGATATG
** *
77158920 AGATTTCGTGTAAGACCATATTTGGTATA-TGGCATCGATATG
1 AGATTTCGTGTAAGACCATAGCTGGGATACTGGCATCGATATG
* * * *
77158962 AGATTTCGTGTAAGATCATAGCTAGGCTATTGGCATCGATATG
1 AGATTTCGTGTAAGACCATAGCTGGGATACTGGCATCGATATG
* * *
77159005 AGATTACATGTAAGACCATAGCTGGGCTACTGGCATCGATA
1 AGATTTCGTGTAAGACCATAGCTGGGATACTGGCATCGATA
77159046 CGATACTATG
Statistics
Matches: 112, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 63 0.56
43 49 0.44
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (43 bp):
AGATTTCGTGTAAGACCATAGCTGGGATACTGGCATCGATATG
Found at i:77159062 original size:43 final size:43
Alignment explanation
Indices: 77158886--77159053 Score: 126
Period size: 43 Copynumber: 4.0 Consensus size: 43
77158876 TAAGATTTCG
* * * * * * *
77158886 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTTCG
1 TGTAAGACCATAGCTAGGCTACTGGCATCGATACGAGACTACA
* * * * * * *
77158928 TGTAAGACCATA-TTTGG-TATATGGCATCGATATGAGATTTCG
1 TGTAAGACCATAGCTAGGCTA-CTGGCATCGATACGAGACTACA
* * * *
77158970 TGTAAGATCATAGCTAGGCTATTGGCATCGATATGAGATTACA
1 TGTAAGACCATAGCTAGGCTACTGGCATCGATACGAGACTACA
* *
77159013 TGTAAGACCATAGCTGGGCTACTGGCATCGATACGATACTA
1 TGTAAGACCATAGCTAGGCTACTGGCATCGATACGAGACTA
77159054 TGAGTAAGAG
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
40 2 0.02
41 3 0.03
42 44 0.41
43 57 0.53
44 2 0.02
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATAGCTAGGCTACTGGCATCGATACGAGACTACA
Found at i:77165807 original size:40 final size:40
Alignment explanation
Indices: 77165713--77165857 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
77165703 TACTCGAATG
*
77165713 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
77165754 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
77165794 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
77165834 ATATTCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
77165858 CTTGTGCAAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:77167577 original size:21 final size:21
Alignment explanation
Indices: 77167539--77167581 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
77167529 CCGTGTGGCT
77167539 AAGGCACACGCCCGTGTGTAAC
1 AAGGCACACGCCCGTGTG-AAC
* *
77167561 AAGG-ACACGGCCTTGTGAAC
1 AAGGCACACGCCCGTGTGAAC
77167581 A
1 A
77167582 GGCCATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 11 0.58
22 4 0.21
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.14
Consensus pattern (21 bp):
AAGGCACACGCCCGTGTGAAC
Found at i:77168965 original size:16 final size:16
Alignment explanation
Indices: 77168944--77168998 Score: 51
Period size: 16 Copynumber: 3.3 Consensus size: 16
77168934 AGTGCAATAT
77168944 CATTTACAAGATCAAC
1 CATTTACAAGATCAAC
77168960 CATTTA-ATA-ATGCAATAC
1 CATTTACA-AGAT-C-A-AC
*
77168978 AATTTACAAGATCAAC
1 CATTTACAAGATCAAC
77168994 CATTT
1 CATTT
77168999 CATAATGAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 12
0.69 0.04 0.27
Matches are distributed among these distances:
15 3 0.10
16 14 0.45
17 2 0.06
18 9 0.29
19 3 0.10
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (16 bp):
CATTTACAAGATCAAC
Found at i:77168974 original size:34 final size:34
Alignment explanation
Indices: 77168936--77169005 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
77168926 CAATTCATAG
77168936 TGCAATATC-ATTTACAAGATCAACCATTTAATAA
1 TGCAATA-CAATTTACAAGATCAACCATTTAATAA
*
77168970 TGCAATACAATTTACAAGATCAACCATTTCATAA
1 TGCAATACAATTTACAAGATCAACCATTTAATAA
77169004 TG
1 TG
77169006 AATCACTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 1 0.03
34 33 0.97
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (34 bp):
TGCAATACAATTTACAAGATCAACCATTTAATAA
Found at i:77169324 original size:3 final size:3
Alignment explanation
Indices: 77169316--77169378 Score: 54
Period size: 3 Copynumber: 20.7 Consensus size: 3
77169306 AAAGGCCCAA
* ** * * * *
77169316 ATT ATT ATT ATT ATC AGC ATT ACT ATT ACT ATT ATT ATT AGTA AAT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT
77169362 ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT AT
77169379 CATTTTTTAC
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
3 45 0.96
4 2 0.04
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (3 bp):
ATT
Found at i:77169938 original size:40 final size:45
Alignment explanation
Indices: 77169870--77169952 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 45
77169860 ATTTTTAAGA
*
77169870 AAAAATAGTGTTTTTTTAAAGAAGAAAGTTTAGATTTTGAAAAAT
1 AAAAATAGTGTTTTTTTAAAGAAGAAAGTTTAAATTTTGAAAAAT
*
77169915 AAAAATA-TG-TTTTTT-AAG-A-AAAGTTTAAATTTTTAAAA
1 AAAAATAGTGTTTTTTTAAAGAAGAAAGTTTAAATTTTGAAAA
77169953 CAAAATTTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
40 17 0.47
41 1 0.03
42 3 0.08
43 6 0.17
44 2 0.06
45 7 0.19
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (45 bp):
AAAAATAGTGTTTTTTTAAAGAAGAAAGTTTAAATTTTGAAAAAT
Found at i:77170704 original size:25 final size:24
Alignment explanation
Indices: 77170676--77170722 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
77170666 TCACTTGCAT
77170676 TTATACA-TTATATATTTAATGTTAA
1 TTATACACTT-TAT-TTTAATGTTAA
*
77170701 TTATGCACTTTATTTTAATGTT
1 TTATACACTTTATTTTAATGTT
77170723 TTATATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 9 0.45
25 9 0.45
26 2 0.10
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (24 bp):
TTATACACTTTATTTTAATGTTAA
Found at i:77179743 original size:27 final size:28
Alignment explanation
Indices: 77179621--77179732 Score: 163
Period size: 28 Copynumber: 4.0 Consensus size: 28
77179611 GAGATTGGCG
* * * *
77179621 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
77179650 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
77179678 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
77179706 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
77179733 TTGGGTGTGC
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 14 0.18
28 48 0.62
29 15 0.19
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:77189096 original size:30 final size:30
Alignment explanation
Indices: 77189061--77189118 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
77189051 TTCGAGCTTT
*
77189061 GGGGCAAAAGTGTAATTATGCAAAAGTTTA
1 GGGGCAAAAGTGTAATTATACAAAAGTTTA
* *
77189091 GGGGCAAAATTGTAATTTTACAAAAGTT
1 GGGGCAAAAGTGTAATTATACAAAAGTT
77189119 AGAGTTAAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (30 bp):
GGGGCAAAAGTGTAATTATACAAAAGTTTA
Found at i:77210527 original size:27 final size:27
Alignment explanation
Indices: 77210496--77210625 Score: 152
Period size: 27 Copynumber: 4.8 Consensus size: 27
77210486 TAGGGCAAAT
77210496 CAGTCATTTTACCTTATAAGGGTATTA
1 CAGTCATTTTACCTTATAAGGGTATTA
* * * *
77210523 TAGTCATTTTACCCTACAGGGGTATTA
1 CAGTCATTTTACCTTATAAGGGTATTA
* * *
77210550 CAGTCATTTCACCCTACAAGGGTATTA
1 CAGTCATTTTACCTTATAAGGGTATTA
* *
77210577 CAGTCATTTTACCTTATAGGGGTATTT
1 CAGTCATTTTACCTTATAAGGGTATTA
* * *
77210604 CAGTCAGTTTATCTCATAAGGG
1 CAGTCATTTTACCTTATAAGGG
77210626 CAAAATCGTC
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
CAGTCATTTTACCTTATAAGGGTATTA
Found at i:77210636 original size:27 final size:27
Alignment explanation
Indices: 77210605--77210702 Score: 126
Period size: 27 Copynumber: 3.7 Consensus size: 27
77210595 GGGGTATTTC
* *
77210605 AGTCAGTTTATCTCATAAGGGCAAAAT
1 AGTCATTTTATCACATAAGGGCAAAAT
* *
77210632 CGTCATTTTATCACATGAGGGCAAAAT
1 AGTCATTTTATCACATAAGGGCAAAAT
*
77210659 AGTCA-TTTACCACATAAGGGCAAAAT
1 AGTCATTTTATCACATAAGGGCAAAAT
* *
77210685 AGTCATTTTGTCTCATAA
1 AGTCATTTTATCACATAA
77210703 AGGTTCAGCT
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 24 0.40
27 36 0.60
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (27 bp):
AGTCATTTTATCACATAAGGGCAAAAT
Found at i:77210678 original size:26 final size:26
Alignment explanation
Indices: 77210618--77210692 Score: 114
Period size: 26 Copynumber: 2.8 Consensus size: 26
77210608 CAGTTTATCT
* *
77210618 CATAAGGGCAAAATCGTCATTTTATCA
1 CATAAGGGCAAAATAGTCA-TTTACCA
*
77210645 CATGAGGGCAAAATAGTCATTTACCA
1 CATAAGGGCAAAATAGTCATTTACCA
77210671 CATAAGGGCAAAATAGTCATTT
1 CATAAGGGCAAAATAGTCATTT
77210693 TGTCTCATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 27 0.61
27 17 0.39
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (26 bp):
CATAAGGGCAAAATAGTCATTTACCA
Found at i:77214201 original size:13 final size:13
Alignment explanation
Indices: 77214183--77214207 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77214173 GGATGAGCAT
77214183 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
77214196 TTTTTTTTCTTT
1 TTTTTTTTCTTT
77214208 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:77226666 original size:40 final size:40
Alignment explanation
Indices: 77226589--77226773 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
77226579 TTGAATGATG
*
77226589 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
77226629 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
77226668 TTCCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
77226708 TCTGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
77226748 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77226774 AACAAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 33 0.27
40 82 0.67
41 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:77226795 original size:79 final size:78
Alignment explanation
Indices: 77226590--77226806 Score: 226
Period size: 79 Copynumber: 2.7 Consensus size: 78
77226580 TGAATGATGT
* *
77226590 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTATATCCGG-TTAAG-TCCGAAGGCAATT
*
77226654 GTGCGAGATACTAATT
63 GTGCGAGATACTAATA
* * * *
77226670 CCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATC-CGGTTAAGT-CCGAAGGCAATTG
*
77226734 TGCGAGTTACT-ATAA
64 TGCGAGATACTAAT-A
* ** *
77226749 CCGGGCTATGTCCCGAAGGCATTTGAACAAG-TAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTATATCCGGTT-AAGTCCGAAGG
77226807 TACGTGATTT
Statistics
Matches: 114, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
78 3 0.03
79 67 0.59
80 44 0.39
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGTTAAGTCCGAAGGCAATTGTG
CGAGATACTAATA
Found at i:77228481 original size:28 final size:27
Alignment explanation
Indices: 77228415--77228511 Score: 131
Period size: 27 Copynumber: 3.6 Consensus size: 27
77228405 ATATTAAGTC
* * *
77228415 CGCACACTCAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTACATAATCAACT
*
77228442 CGCACACCTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
77228470 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
77228497 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77228512 GCACAATTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 38 0.61
28 24 0.39
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:77247487 original size:40 final size:39
Alignment explanation
Indices: 77247443--77247547 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
77247433 AGTGACCATA
*
77247443 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
77247483 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
77247521 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
77247548 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:77247504 original size:39 final size:40
Alignment explanation
Indices: 77247403--77247566 Score: 169
Period size: 40 Copynumber: 4.1 Consensus size: 40
77247393 TTGAATGATG
* *
77247403 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
77247443 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
77247482 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* * **
77247522 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATA-CTATA
77247562 TCCGG
1 TCCGG
77247567 TTAAATTCTG
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
39 36 0.34
40 59 0.56
41 10 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:77247566 original size:79 final size:80
Alignment explanation
Indices: 77247403--77247553 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
77247393 TTGAATGATG
*
77247403 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
77247468 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
77247483 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
77247545 TTGAACGAG
64 TTGAACGAG
77247554 TAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:77250761 original size:96 final size:95
Alignment explanation
Indices: 77250592--77250969 Score: 445
Period size: 96 Copynumber: 3.9 Consensus size: 95
77250582 GTAAATTACC
* * *
77250592 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATG-TCGAGGCCAATGCCATGTCCCAAA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGAT-GTGGCCAATGCCATGTCCCAGA
* * * * *
77250656 CACGATCTTACACTAGCTCTCGTCTCAATGCT
65 CATG-TCTTACACTAGCACACATATCAATGCT
* ** *
77250688 GATGCCATGTCCAAGACATTATCTTACACTGGCTCTCATGATGTGGCCAATGCCATGCCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGGCCAATGCCATGTCCCAGAC
*
77250753 ATGTTCTTACACTAGCGCACATATCAATGCT
66 ATG-TCTTACACTAGCACACATATCAATGCT
* * * * *
77250784 GATGCCATGACCCAGACATGGTTTTACACTGGCTTTTATGATGTGGCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGGCCAATGCCATGTCCCAGAC
* * * *
77250849 ATAGTCTTACACTATCACACATATAAACGCC
66 AT-GTCTTACACTAGCACACATATCAATGCT
* * * * * *
77250880 GATGCCATGTCCCAGACATGGTCTTACACT-GCTCTTATAATGTGTCCGATTCCATGTGCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGGCCAATGCCATGTCCCAGAC
77250944 ATGGTCTTACACTAGCACACATATCA
66 AT-GTCTTACACTAGCACACATATCA
77250970 CCCAAATGTC
Statistics
Matches: 243, Mismatches: 37, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
95 52 0.21
96 189 0.78
97 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (95 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGGCCAATGCCATGTCCCAGAC
ATGTCTTACACTAGCACACATATCAATGCT
Found at i:77250946 original size:47 final size:47
Alignment explanation
Indices: 77250590--77250956 Score: 235
Period size: 48 Copynumber: 7.7 Consensus size: 47
77250580 GGGTAAATTA
* ** * *
77250590 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-GTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTCGCTCTTATAAT-G-TG
* * * * * *
77250638 CCAATGCCATGTCCCAAACACGATCTTACACTAGCTCTCGTCTCAA--TG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTCGCTCT--TAT-AATGTG
* * ** * * *
77250686 CTGATGCCATGTCCAAGACATTATCTTACACTGGCTCTCATGATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTCGCTCTTATAATGT-G
* * * * *
77250734 CCAATGCCATGCCCCAGACATGTTCTTACACTAGCGCACATATCAA--TG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT--CGCTCTTAT-AATGTG
* * * * * *
77250782 CTGATGCCATGACCCAGACATGGTTTTACACTGGCTTTTATGATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTCGCTCTTATAATGT-G
* * * * **
77250830 CCGATGCCATGTCCCAGACATAGTCTTACACTATCACACATATAA-ACG
1 CCGATGCCATGTCCCAGACATGGTCTTACAC--TCGCTCTTATAATGTG
77250878 CCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTTATAATGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTCGCTCTTATAATGTG
* *
77250924 TCCGATTCCATGTGCCAGACATGGTCTTACACT
1 -CCGATGCCATGTCCCAGACATGGTCTTACACT
77250957 AGCACACATA
Statistics
Matches: 241, Mismatches: 61, Indels: 35
0.72 0.18 0.10
Matches are distributed among these distances:
45 9 0.04
46 8 0.03
47 32 0.13
48 178 0.74
49 1 0.00
50 12 0.05
51 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTCGCTCTTATAATGTG
Found at i:77258502 original size:48 final size:48
Alignment explanation
Indices: 77258428--77259035 Score: 688
Period size: 48 Copynumber: 12.7 Consensus size: 48
77258418 GGGTAAATTA
*
77258428 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATG-TCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGAT-GAGG
* * * * * *
77258476 CCGATGCCATGACCCAGACATAGTCTTACATTGGTTCTCATGATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGATGAGG
* * * * * *
77258524 TCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACAT-ATCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGAT-GAGG
** * *
77258572 TTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGATGAGG
* * * * *
77258620 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACAT-ATCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGAT-GAGG
* *
77258668 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGATGAGG
* * * * *
77258716 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACAT-ATCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGAT-GAGG
* *
77258764 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGATGAGG
* * * * *
77258812 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACAT-ATCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGAT-GAGG
* *
77258860 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGATGAGG
* * * * *
77258908 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACAT-ATCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGAT-GAGG
* *
77258956 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGATGAGG
* * *
77259004 TCGAGGCCATGTCCCAGACATGGACTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
77259036 AGCATACATA
Statistics
Matches: 461, Mismatches: 88, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
47 10 0.02
48 440 0.95
49 11 0.02
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGATGAGG
Found at i:77258598 original size:96 final size:96
Alignment explanation
Indices: 77258428--77259048 Score: 1035
Period size: 96 Copynumber: 6.5 Consensus size: 96
77258418 GGGTAAATTA
* * * * * * * *
77258428 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGACCCAG
1 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAG
* * *
77258493 ACATAGTCTTACATTGGTTCTCATGATGTGG
66 ACATGGTCTTACACTGGCTCTCATGATGTGG
* * * * **
77258524 TCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCAACGTTGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAG
77258589 ACATGGTCTTACACTGGCTCTCATGATGTGG
66 ACATGGTCTTACACTGGCTCTCATGATGTGG
77258620 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAG
77258685 ACATGGTCTTACACTGGCTCTCATGATGTGG
66 ACATGGTCTTACACTGGCTCTCATGATGTGG
77258716 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAG
77258781 ACATGGTCTTACACTGGCTCTCATGATGTGG
66 ACATGGTCTTACACTGGCTCTCATGATGTGG
77258812 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAG
77258877 ACATGGTCTTACACTGGCTCTCATGATGTGG
66 ACATGGTCTTACACTGGCTCTCATGATGTGG
77258908 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAG
77258973 ACATGGTCTTACACTGGCTCTCATGATGTGG
66 ACATGGTCTTACACTGGCTCTCATGATGTGG
* * * * **
77259004 TCGAGGCCATGTCCCAGACATGGACTTACACTAGCATACATATCA
1 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACATATCA
77259049 CCCAAATGTC
Statistics
Matches: 499, Mismatches: 26, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 499 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (96 bp):
CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTCCCAG
ACATGGTCTTACACTGGCTCTCATGATGTGG
Found at i:77259123 original size:20 final size:20
Alignment explanation
Indices: 77259098--77259140 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
77259088 TTCAATCAGG
77259098 ACCCTACTACATTAAATTTC
1 ACCCTACTACATTAAATTTC
77259118 ACCCTACTACATTAAATTTC
1 ACCCTACTACATTAAATTTC
77259138 ACC
1 ACC
77259141 ATGCATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.33, G:0.00, T:0.33
Consensus pattern (20 bp):
ACCCTACTACATTAAATTTC
Found at i:77261186 original size:18 final size:18
Alignment explanation
Indices: 77261163--77261199 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
77261153 ATATATATTG
77261163 ACCCAAGTACCCAACCCA
1 ACCCAAGTACCCAACCCA
*
77261181 ACCCAATTACCCAACCCA
1 ACCCAAGTACCCAACCCA
77261199 A
1 A
77261200 TCATAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.49, G:0.03, T:0.08
Consensus pattern (18 bp):
ACCCAAGTACCCAACCCA
Found at i:77261200 original size:13 final size:13
Alignment explanation
Indices: 77261176--77261200 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77261166 CAAGTACCCA
77261176 ACCCAACCCAATT
1 ACCCAACCCAATT
77261189 ACCCAACCCAAT
1 ACCCAACCCAAT
77261201 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:77261266 original size:7 final size:6
Alignment explanation
Indices: 77261225--77261265 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
77261215 ATAATTTAAT
*
77261225 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
77261266 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:77261266 original size:20 final size:20
Alignment explanation
Indices: 77261228--77261267 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
77261218 ATTTAATAAA
**
77261228 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
77261248 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
77261268 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:77261353 original size:9 final size:9
Alignment explanation
Indices: 77261285--77261352 Score: 91
Period size: 9 Copynumber: 7.6 Consensus size: 9
77261275 TTTATACAAA
*
77261285 TAATTCGAT
1 TAATTCGGT
77261294 TAATTCGGT
1 TAATTCGGT
77261303 TAATTCGGT
1 TAATTCGGT
* *
77261312 TAATTTGGG
1 TAATTCGGT
*
77261321 TAATTCGGG
1 TAATTCGGT
77261330 TAATTCGGT
1 TAATTCGGT
*
77261339 TAATTTGGT
1 TAATTCGGT
77261348 TAATT
1 TAATT
77261353 TTATACTTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 53 1.00
ACGTcount: A:0.25, C:0.07, G:0.22, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:77263005 original size:16 final size:17
Alignment explanation
Indices: 77262984--77263022 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
77262974 AGTGTAACAC
77262984 CCCAAAAAT-CTCGAAA-
1 CCCAAAAATCCT-GAAAT
77263000 CCCAAAAATCCTGAAAT
1 CCCAAAAATCCTGAAAT
77263017 CCCAAA
1 CCCAAA
77263023 CTTTTTTTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.49, C:0.33, G:0.05, T:0.13
Consensus pattern (17 bp):
CCCAAAAATCCTGAAAT
Found at i:77264606 original size:29 final size:29
Alignment explanation
Indices: 77264548--77264656 Score: 123
Period size: 29 Copynumber: 3.8 Consensus size: 29
77264538 AAGGTGATTG
* * *
77264548 GGGCCTAACGGGCCATAT-ACA-GTGATTT
1 GGGCCTAATGGGCCATATGA-ATATGAATT
*
77264576 GGGCCTAATAGGCCATATGAATATGAATT
1 GGGCCTAATGGGCCATATGAATATGAATT
* * *
77264605 GGGCTTGATGGGCCATATGAATGTGAATT
1 GGGCCTAATGGGCCATATGAATATGAATT
*
77264634 GGGCCTAATGGGTCATATGAATA
1 GGGCCTAATGGGCCATATGAATA
77264657 AGATGGGCCA
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
28 17 0.25
29 50 0.75
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (29 bp):
GGGCCTAATGGGCCATATGAATATGAATT
Found at i:77268781 original size:28 final size:29
Alignment explanation
Indices: 77268750--77268810 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
77268740 TTGAGCATGA
*
77268750 ATAT-AAGGTGATTTGGGCCTAACGGGCC
1 ATATAAAGGTGATTTGGGCCTAACAGGCC
* *
77268778 ATATAAAGGTGATTTGGGTCTAATAGGCC
1 ATATAAAGGTGATTTGGGCCTAACAGGCC
77268807 ATAT
1 ATAT
77268811 GGATATGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 4 0.14
29 25 0.86
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.30
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGGCCTAACAGGCC
Found at i:77268823 original size:29 final size:29
Alignment explanation
Indices: 77268762--77268872 Score: 80
Period size: 29 Copynumber: 3.8 Consensus size: 29
77268752 ATAAGGTGAT
** * ** *
77268762 TTGGGCCTAACGGGCCATATAAAGGTGAT
1 TTGGGCCTAATAGGCCATATGAATATGAA
* *
77268791 TTGGGTCTAATAGGCCATATGGATATGAA
1 TTGGGCCTAATAGGCCATATGAATATGAA
* * * *
77268820 TTGGGCCTGATGGGCTATATGAATGTGAA
1 TTGGGCCTAATAGGCCATATGAATATGAA
* *
77268849 TTGGGCC-AGATGGGCTATATGAAT
1 TTGGGCCTA-ATAGGCCATATGAAT
77268873 GAGATGGGCC
Statistics
Matches: 66, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.29
Consensus pattern (29 bp):
TTGGGCCTAATAGGCCATATGAATATGAA
Found at i:77268873 original size:29 final size:29
Alignment explanation
Indices: 77268807--77268873 Score: 107
Period size: 29 Copynumber: 2.3 Consensus size: 29
77268797 CTAATAGGCC
* * *
77268807 ATATGGATATGAATTGGGCCTGATGGGCT
1 ATATGAATGTGAATTGGGCCAGATGGGCT
77268836 ATATGAATGTGAATTGGGCCAGATGGGCT
1 ATATGAATGTGAATTGGGCCAGATGGGCT
77268865 ATATGAATG
1 ATATGAATG
77268874 AGATGGGCCA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCAGATGGGCT
Found at i:77275546 original size:42 final size:41
Alignment explanation
Indices: 77275383--77275549 Score: 163
Period size: 42 Copynumber: 4.0 Consensus size: 41
77275373 AATCATACCA
* * * * *
77275383 ATGCCATAACCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAAACTCATAACG
* * * ** *
77275425 ATGCTAATAGCCCAGCTATGGTCTTACACGATTCTCATATCG
1 ATGC-CATATCCCAGATATGGTCTTACACGAAACTCATAACG
* * **
77275467 ATGCCATGTCCTAGACGTGGTCTTACACGAAATCTCATAACG
1 ATGCCATATCCCAGATATGGTCTTACACGAAA-CTCATAACG
77275509 ATGCCATATCCCAGATATGGTCTTACACGTAAACTCATAAC
1 ATGCCATATCCCAGATATGGTCTTACACG-AAACTCATAAC
77275550 CCTAATGTCA
Statistics
Matches: 102, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
41 19 0.19
42 60 0.59
43 23 0.23
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAACTCATAACG
Found at i:77276394 original size:346 final size:346
Alignment explanation
Indices: 77275754--77276441 Score: 1225
Period size: 346 Copynumber: 2.0 Consensus size: 346
77275744 TTTAGTCCAC
* *
77275754 AACTTTGTTGTTTCCCTAGTCTAGGTCCAGACTCTATTTTTCTCGATCTATAATAGCAAATTTAG
1 AACTTTGTTGTTTCCCCAGTCTAGGTCCAGACTCCATTTTTCTCGATCTATAATAGCAAATTTAG
*
77275819 CTCATTTAATTATCACATTGTTCAAATCAGTCCAAAAACCATACTTTGGTAAAATTATAGTTTTG
66 CTCATTTAATTATCACATTGTTCAAATCAGTCCAAAAACCATACTTTGGAAAAATTATAGTTTTG
*
77275884 CCTCTAAACTTTCACATATTTACAAATTAGTTCTTAGGCTCGTAAAATGAAATGTACTCATTTTA
131 CCTCTAAACTTTCACATATTTACAAATTAGTCCTTAGGCTCGTAAAATGAAATGTACTCATTTTA
*
77275949 TTTGTTACCCAAGCCTAGCTGAGCCTATATCATGCTTATACCAGCCCACATTTTTCATCAAATCA
196 TTTGTTACCCAAGCCTAGCCGAGCCTATATCATGCTTATACCAGCCCACATTTTTCATCAAATCA
* * *
77276014 CATTTCTACTACCCATTTTTATAACATCTACAAATAAGCCCTTTTTAGGTGTTTTCATCAAAAAA
261 CATTTCTACAACCCATTTTTATAACATCTACAAATAAACCCTTTTTAGGTGTTTTCATAAAAAAA
77276079 TCACTTAGTAAAAGATGGACT
326 TCACTTAGTAAAAGATGGACT
* * * *
77276100 AACTTTGTT-TGTTCCCCGGTCTAGGTCTAGAGTCCATTTTTCTTGATCTATAATAGCAAATTTA
1 AACTTTGTTGT-TTCCCCAGTCTAGGTCCAGACTCCATTTTTCTCGATCTATAATAGCAAATTTA
77276164 GCTCATTTAATTATCACATTGTTCAAATCAGTCCAAAAACCATACTTTGGAAAAATTATAGTTTT
65 GCTCATTTAATTATCACATTGTTCAAATCAGTCCAAAAACCATACTTTGGAAAAATTATAGTTTT
*
77276229 GCCTCTAAACTTTCACATATTTATAAATTAGTCCTTAGGCTCGTAAAATGAAATGTACTCATTTT
130 GCCTCTAAACTTTCACATATTTACAAATTAGTCCTTAGGCTCGTAAAATGAAATGTACTCATTTT
77276294 ATTTGTTACCCAAGCCTAGCCGAGCCTATATCATGCTTATACCAGCCCACATTTTTCATCAAATC
195 ATTTGTTACCCAAGCCTAGCCGAGCCTATATCATGCTTATACCAGCCCACATTTTTCATCAAATC
* *
77276359 ACATTTCTACAACCCATTTTTATAACTTTTACAAATAAACCCTTTTTAGGTGTTTTCATAAAAAA
260 ACATTTCTACAACCCATTTTTATAACATCTACAAATAAACCCTTTTTAGGTGTTTTCATAAAAAA
77276424 ATCACTTAGTAAAAGATG
325 ATCACTTAGTAAAAGATG
77276442 TTTATCACAG
Statistics
Matches: 326, Mismatches: 15, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
345 1 0.00
346 325 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.37
Consensus pattern (346 bp):
AACTTTGTTGTTTCCCCAGTCTAGGTCCAGACTCCATTTTTCTCGATCTATAATAGCAAATTTAG
CTCATTTAATTATCACATTGTTCAAATCAGTCCAAAAACCATACTTTGGAAAAATTATAGTTTTG
CCTCTAAACTTTCACATATTTACAAATTAGTCCTTAGGCTCGTAAAATGAAATGTACTCATTTTA
TTTGTTACCCAAGCCTAGCCGAGCCTATATCATGCTTATACCAGCCCACATTTTTCATCAAATCA
CATTTCTACAACCCATTTTTATAACATCTACAAATAAACCCTTTTTAGGTGTTTTCATAAAAAAA
TCACTTAGTAAAAGATGGACT
Found at i:77276492 original size:36 final size:35
Alignment explanation
Indices: 77276443--77276513 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 35
77276433 TAAAAGATGT
*
77276443 TTATCACAGATCAAACTTTCATAATCTACCATGAAA
1 TTATCACACATCAAACTTTCATAATCTA-CATGAAA
*
77276479 TTATCACACATCAAACTTTCTTAATCTACATGAAA
1 TTATCACACATCAAACTTTCATAATCTACATGAAA
77276514 CATAAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
35 7 0.21
36 26 0.79
ACGTcount: A:0.41, C:0.23, G:0.04, T:0.32
Consensus pattern (35 bp):
TTATCACACATCAAACTTTCATAATCTACATGAAA
Found at i:77279169 original size:46 final size:46
Alignment explanation
Indices: 77279102--77279274 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
77279092 TGTAACCCGC
* * *
77279102 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGTGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTATTCGTAT
* * *
77279148 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATACCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTA-TTCGTAT
* * * * * * *
77279194 ACATCTTA-CGAACTCAGACTCAACTCAACGAGTTTGGGAATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTATTCGTAT
* *
77279241 CCATAAGTGAACTCGAACTCAACTCAATGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
77279275 AGATGCCTAG
Statistics
Matches: 99, Mismatches: 23, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 2 0.02
46 62 0.63
47 33 0.33
48 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTATTCGTAT
Found at i:77279219 original size:93 final size:93
Alignment explanation
Indices: 77279117--77279323 Score: 315
Period size: 93 Copynumber: 2.2 Consensus size: 93
77279107 AGTGAACTTG
* ** * *
77279117 GACTCAACTCAACGAGCTCGGGTGTTCGTATCCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 GACTCAACTCAACGAGTTCGGGAATTCGCATCCATAAGTGAACTCGAACTCAACTCAACGAGTTC
* *
77279182 GGATACCTAGTTACATCTTACGAACTCA
66 AGATACCTAGTTACATCTCACGAACTCA
* *
77279210 GACTCAACTCAACGAGTTTGGGAATTCGCATCCATAAGTGAACTCGAACTCAACTCAATGAGTTC
1 GACTCAACTCAACGAGTTCGGGAATTCGCATCCATAAGTGAACTCGAACTCAACTCAACGAGTTC
*
77279275 AGATGCCTAGTTACATCTCACGAACTCA
66 AGATACCTAGTTACATCTCACGAACTCA
*
77279303 AACTCAACTCAACGAGTTCGG
1 GACTCAACTCAACGAGTTCGG
77279324 ATGCCTAAAT
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 102 1.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (93 bp):
GACTCAACTCAACGAGTTCGGGAATTCGCATCCATAAGTGAACTCGAACTCAACTCAACGAGTTC
AGATACCTAGTTACATCTCACGAACTCA
Found at i:77279220 original size:47 final size:47
Alignment explanation
Indices: 77279156--77279330 Score: 155
Period size: 47 Copynumber: 3.7 Consensus size: 47
77279146 ATCCATAAGT
* *
77279156 GAACTCGGACTCAACTCAACGAGTTCGGATACCTAGTTACATCTTAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATACCTAGTTACATCTAAC
* ** *
77279203 GAACTCAGACTCAACTCAACGAGTTTGGGA-A--T--TCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACGAG-TTCGGATACCTAGTTACAT-C-TAA-C
* * * *
77279249 GAACTC-GAACTCAACTCAATGAGTTCAGATGCCTAGTTACATCTCAC
1 GAACTCAG-ACTCAACTCAACGAGTTCGGATACCTAGTTACATCTAAC
* *
77279296 GAACTCAAACTCAACTCAACGAGTTCGGATGCCTA
1 GAACTCAGACTCAACTCAACGAGTTCGGATACCTA
77279331 AATATCTGAA
Statistics
Matches: 100, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 8 0.08
46 20 0.20
47 54 0.54
48 8 0.08
49 1 0.01
50 4 0.04
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGTTCGGATACCTAGTTACATCTAAC
Found at i:77282106 original size:15 final size:14
Alignment explanation
Indices: 77282062--77282124 Score: 58
Period size: 15 Copynumber: 4.4 Consensus size: 14
77282052 GATAACAAGA
77282062 AAACC-GAATAAAG
1 AAACCAGAATAAAG
**
77282075 AAATCCA-AGATTGAG
1 AAA-CCAGA-ATAAAG
77282090 AAACCTAGAATAAAG
1 AAACC-AGAATAAAG
77282105 AAATCCAGAATAAAG
1 AAA-CCAGAATAAAG
77282120 AAACC
1 AAACC
77282125 CAAGATACGA
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
13 3 0.08
14 7 0.17
15 27 0.68
16 3 0.08
ACGTcount: A:0.57, C:0.16, G:0.14, T:0.13
Consensus pattern (14 bp):
AAACCAGAATAAAG
Found at i:77282122 original size:30 final size:30
Alignment explanation
Indices: 77282067--77282124 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
77282057 CAAGAAAACC
**
77282067 GAATAAAGAAATCCAAGATTGAGAAACCTA
1 GAATAAAGAAATCCAAGATAAAGAAACCTA
77282097 GAATAAAGAAATCC-AGAATAAAGAAACC
1 GAATAAAGAAATCCAAG-ATAAAGAAACC
77282125 CAAGATACGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.57, C:0.14, G:0.16, T:0.14
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCTA
Found at i:77285218 original size:47 final size:47
Alignment explanation
Indices: 77285155--77285329 Score: 216
Period size: 47 Copynumber: 3.7 Consensus size: 47
77285145 ATCCATAAGT
* *
77285155 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTAAC
1 GAACTCAGACTCAACTCAACAAGTTCGGATGCCTAGTTACATCTAAC
*
77285202 GAACTCAGACTCAACTCAACAAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACAAGTTCGGATGCCTAGTTACATCTAAC
* * * *
77285249 GAACTCGGACTCAACTGAACGAGTTCGGA---C--GTTCACATCCATAAAT
1 GAACTCAGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT-C-T-AAC
77285295 GAACTCAGACTCAACTCAACAAGTTCGGATGCCTA
1 GAACTCAGACTCAACTCAACAAGTTCGGATGCCTA
77285330 AATATCTGAA
Statistics
Matches: 108, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 2 0.02
45 1 0.01
46 27 0.25
47 70 0.65
49 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACAAGTTCGGATGCCTAGTTACATCTAAC
Found at i:77285302 original size:93 final size:91
Alignment explanation
Indices: 77285155--77285329 Score: 255
Period size: 93 Copynumber: 1.9 Consensus size: 91
77285145 ATCCATAAGT
77285155 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTAACGAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTTCGGA--CC-AGTTACATCTAACGAACTCAGACTCAACTCA
77285220 ACAAGTTCGGATGCCTAGTTACATCTCAC
63 ACAAGTTCGGATGCCTAGTTACATCTCAC
* *
77285249 GAACTCGGACTCAACTGAACGAGTTCGGA-C-GTTCACATCCATAAATGAACTCAGACTCAACTC
1 GAACTCGGACTCAACTCAACGAGTTCGGACCAGTT-ACAT-C-T-AACGAACTCAGACTCAACTC
77285312 AACAAGTTCGGATGCCTA
62 AACAAGTTCGGATGCCTA
77285330 AATATCTGAA
Statistics
Matches: 75, Mismatches: 2, Indels: 9
0.87 0.02 0.10
Matches are distributed among these distances:
89 3 0.04
90 4 0.05
91 2 0.03
92 1 0.01
93 37 0.49
94 28 0.37
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACCAGTTACATCTAACGAACTCAGACTCAACTCAACA
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:77287043 original size:17 final size:18
Alignment explanation
Indices: 77287021--77287054 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
77287011 TTTTGGGCTT
77287021 TGTGGGC-CACATGGGCG
1 TGTGGGCTCACATGGGCG
77287038 TGTGGGCTCACATGGGC
1 TGTGGGCTCACATGGGC
77287055 CCACGATATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.12, C:0.24, G:0.44, T:0.21
Consensus pattern (18 bp):
TGTGGGCTCACATGGGCG
Found at i:77287203 original size:27 final size:27
Alignment explanation
Indices: 77287162--77287417 Score: 260
Period size: 27 Copynumber: 9.5 Consensus size: 27
77287152 ACACTAGACC
* *
77287162 CCTTTATGTGATAAAATGGCTATTTTT
1 CCTTTATGTGATAAAATGACTATTTTG
* * *
77287189 CCTTTGTGTGGTAAAATGATTATTTTG
1 CCTTTATGTGATAAAATGACTATTTTG
* *
77287216 CCTTCATGTGGTAAAATGACTATTTTG
1 CCTTTATGTGATAAAATGACTATTTTG
*
77287243 CCCTTATGTGATAAAATGACTATTTTG
1 CCTTTATGTGATAAAATGACTATTTTG
* *
77287270 CCTTTATGTGATAAAATAACTATTTTT
1 CCTTTATGTGATAAAATGACTATTTTG
* * * * *
77287297 CCTTTTTTTGATAAAATGATTGTTTCG
1 CCTTTATGTGATAAAATGACTATTTTG
* * **
77287324 CCCTTATGTGGTAAAATGACTGCTTTG
1 CCTTTATGTGATAAAATGACTATTTTG
* * * * *
77287351 CCCTCATGTGGTAAAATTACTGTTTTG
1 CCTTTATGTGATAAAATGACTATTTTG
* *
77287378 CCCTTATGTGGTAAAATGACTATTTTG
1 CCTTTATGTGATAAAATGACTATTTTG
**
77287405 CCCCTATGTGATA
1 CCTTTATGTGATA
77287418 TATGTTTATA
Statistics
Matches: 193, Mismatches: 36, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 193 1.00
ACGTcount: A:0.25, C:0.14, G:0.17, T:0.43
Consensus pattern (27 bp):
CCTTTATGTGATAAAATGACTATTTTG
Found at i:77287312 original size:81 final size:81
Alignment explanation
Indices: 77287165--77287417 Score: 299
Period size: 81 Copynumber: 3.1 Consensus size: 81
77287155 CTAGACCCCT
* * * * * *
77287165 TTATGTGATAAAATGGCTATTTTTCCTTTGTGTGGTAAAATGATTATTTTGCCTTCATGTGGTAA
1 TTATGTGATAAAATGACTATTTTGCCTTTATGTGGTAAAATAACTATTTTGCCTTTATGTGGTAA
77287230 AATGACTATTTTGCCC
66 AATGACTATTTTGCCC
* * * * *
77287246 TTATGTGATAAAATGACTATTTTGCCTTTATGTGATAAAATAACTATTTTTCCTTTTTTTGATAA
1 TTATGTGATAAAATGACTATTTTGCCTTTATGTGGTAAAATAACTATTTTGCCTTTATGTGGTAA
* * *
77287311 AATGATTGTTTCGCCC
66 AATGACTATTTTGCCC
* ** * * * * *
77287327 TTATGTGGTAAAATGACTGCTTTGCCCTCATGTGGTAAAATTACTGTTTTGCCCTTATGTGGTAA
1 TTATGTGATAAAATGACTATTTTGCCTTTATGTGGTAAAATAACTATTTTGCCTTTATGTGGTAA
77287392 AATGACTATTTTGCCC
66 AATGACTATTTTGCCC
*
77287408 CTATGTGATA
1 TTATGTGATA
77287418 TATGTTTATA
Statistics
Matches: 140, Mismatches: 32, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 140 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (81 bp):
TTATGTGATAAAATGACTATTTTGCCTTTATGTGGTAAAATAACTATTTTGCCTTTATGTGGTAA
AATGACTATTTTGCCC
Found at i:77287351 original size:108 final size:108
Alignment explanation
Indices: 77287162--77287403 Score: 333
Period size: 108 Copynumber: 2.2 Consensus size: 108
77287152 ACACTAGACC
* * *
77287162 CCTTTATGTGATAAAATGGCTATTTTTCCTTTGTGTGGTAAAATGATTATTTTGCCTTCATGTGG
1 CCTTTATGTGATAAAATGACTATTTTTCCTTTGTGTGATAAAATGATTATTTCGCCTTCATGTGG
* *
77287227 TAAAATGACTATTTTGCCCTTATGTGATAAAATGACTATTTTG
66 TAAAATGACTACTTTGCCCTCATGTGATAAAATGACTATTTTG
* * * *
77287270 CCTTTATGTGATAAAATAACTATTTTTCCTTTTTTTGATAAAATGATTGTTTCGCCCTT-ATGTG
1 CCTTTATGTGATAAAATGACTATTTTTCCTTTGTGTGATAAAATGATTATTTCG-CCTTCATGTG
* * * *
77287334 GTAAAATGACTGCTTTGCCCTCATGTGGTAAAATTACTGTTTTG
65 GTAAAATGACTACTTTGCCCTCATGTGATAAAATGACTATTTTG
* *
77287378 CCCTTATGTGGTAAAATGACTATTTT
1 CCTTTATGTGATAAAATGACTATTTT
77287404 GCCCCTATGT
Statistics
Matches: 117, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
108 113 0.97
109 4 0.03
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.44
Consensus pattern (108 bp):
CCTTTATGTGATAAAATGACTATTTTTCCTTTGTGTGATAAAATGATTATTTCGCCTTCATGTGG
TAAAATGACTACTTTGCCCTCATGTGATAAAATGACTATTTTG
Found at i:77287765 original size:24 final size:24
Alignment explanation
Indices: 77287733--77287778 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
77287723 CAAACACATG
77287733 ACTGATTTTGTATTGAGATGGGGT
1 ACTGATTTTGTATTGAGATGGGGT
77287757 ACTGATTTTGTATTGAGATGGG
1 ACTGATTTTGTATTGAGATGGG
77287779 CTAAAGCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.22, C:0.04, G:0.33, T:0.41
Consensus pattern (24 bp):
ACTGATTTTGTATTGAGATGGGGT
Found at i:77294099 original size:11 final size:11
Alignment explanation
Indices: 77294083--77294108 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
77294073 CGAAGCCAAC
77294083 ATCACAATAAT
1 ATCACAATAAT
77294094 ATCACAATAAT
1 ATCACAATAAT
77294105 ATCA
1 ATCA
77294109 TACGTGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:77294723 original size:18 final size:18
Alignment explanation
Indices: 77294700--77294737 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
77294690 GTCCATGGTC
77294700 TCAATAAATTAATTAAGT
1 TCAATAAATTAATTAAGT
77294718 TCAATAAATTAATTAAGT
1 TCAATAAATTAATTAAGT
77294736 TC
1 TC
77294738 TATGCAGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.39
Consensus pattern (18 bp):
TCAATAAATTAATTAAGT
Found at i:77294864 original size:29 final size:28
Alignment explanation
Indices: 77294801--77294880 Score: 106
Period size: 29 Copynumber: 2.8 Consensus size: 28
77294791 CATACATGCT
* * *
77294801 TATGGCCTACTAGGCCCAATCTCATTTA
1 TATGGCCCACTAGGCCCAATCACATCTA
*
77294829 TATGGCCCATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
*
77294858 TCTGGCCCACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
77294881 TTTTACAGTC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 21 0.47
29 24 0.53
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:77297685 original size:48 final size:48
Alignment explanation
Indices: 77297496--77297727 Score: 192
Period size: 48 Copynumber: 4.9 Consensus size: 48
77297486 CAAGGTGGGG
* * * ** * *
77297496 TGCCAATGCCATATCCCAAAAATGGTCTTTTATGGGACCACATAACGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATGA
* * * *
77297544 TGCCAATACCATGTCCCAAACATCGTCTTACATGGGATCACA-CAT-A
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATGA
* * * *
77297590 TTG--AA-GCCGATAG-CCTAG-CTATGGTCTTACATGATG-TCTCATTATGA
1 -TGCCAATGCC-AT-GTCCCAGAC-ATGGTCTTACATG-GGATCACATAATGA
*
77297637 TGCCAATGCCATGTCCCGGACATGGTCTTACATGGGATCACATAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATGA
* * *
77297685 TGCCAAAGCCATGTCCAAGACATGGTCTTTCATGGGATCACAT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAT
77297728 GTCACTGCCG
Statistics
Matches: 146, Mismatches: 25, Indels: 26
0.74 0.13 0.13
Matches are distributed among these distances:
44 3 0.02
45 23 0.16
46 7 0.05
47 6 0.04
48 103 0.71
49 4 0.03
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAATGA
Found at i:77297742 original size:48 final size:48
Alignment explanation
Indices: 77297610--77297762 Score: 139
Period size: 48 Copynumber: 3.2 Consensus size: 48
77297600 TAGCCTAGCT
* * * * * **
77297610 ATGGTCTTACATGATG-TCTCATTATGATGCCAATGCCATGTCCCGGAC
1 ATGGTCTTACATG-GGATCACATAATCATGCCAAAGCCATGTCCAAGAC
*
77297658 ATGGTCTTACATGGGATCACATAATGATGCCAAAGCCATGTCCAAGAC
1 ATGGTCTTACATGGGATCACATAATCATGCCAAAGCCATGTCCAAGAC
* * * ** * *
77297706 ATGGTCTTTCATGGGATCACAT-GTCACTGCCGAAGCCATACCCTAGAT
1 ATGGTCTTACATGGGATCACATAATCA-TGCCAAAGCCATGTCCAAGAC
77297754 ATGGTCTTA
1 ATGGTCTTA
77297763 TACGGGAGCT
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
47 3 0.03
48 85 0.97
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCACATAATCATGCCAAAGCCATGTCCAAGAC
Found at i:77302619 original size:54 final size:54
Alignment explanation
Indices: 77302528--77302630 Score: 161
Period size: 54 Copynumber: 1.9 Consensus size: 54
77302518 GTGATGGCAA
*
77302528 GAAGACCATATAGTGTAAGACCTAGTCTAGAAATATGGCGTCATATGGGAAATT
1 GAAGACCATATAGTGTAAGACCTAGTCTAGAAATATGGCATCATATGGGAAATT
* * * *
77302582 GAAGACCATATAGTGTAAGACCTAGTCTGGGACTATGGCATCATGTGGG
1 GAAGACCATATAGTGTAAGACCTAGTCTAGAAATATGGCATCATATGGG
77302631 GAAAAAGTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (54 bp):
GAAGACCATATAGTGTAAGACCTAGTCTAGAAATATGGCATCATATGGGAAATT
Found at i:77302980 original size:29 final size:29
Alignment explanation
Indices: 77302912--77303043 Score: 124
Period size: 29 Copynumber: 4.3 Consensus size: 29
77302902 ATATGAGAAA
* *
77302912 GCCTTTGTGGCTATCTA-ATGTTATATGAGGAT
1 GCCTTTGTGG--ATCTATATG-T-TATGTGGAC
77302944 GCCTTTGTGGATCTATATGTTATGTGGAC
1 GCCTTTGTGGATCTATATGTTATGTGGAC
* * *
77302973 GCTTTTGTGGCTATCTA-ATGTTATATGAGGAT
1 GCCTTTGTGG--ATCTATATG-T-TATGTGGAC
*
77303005 GCCTTTGAGGATCTATATGTTATGTGGAC
1 GCCTTTGTGGATCTATATGTTATGTGGAC
77303034 GCCTTTGTGG
1 GCCTTTGTGG
77303044 CTATCTAATG
Statistics
Matches: 84, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
29 32 0.38
30 15 0.18
31 12 0.14
32 25 0.30
ACGTcount: A:0.19, C:0.13, G:0.27, T:0.41
Consensus pattern (29 bp):
GCCTTTGTGGATCTATATGTTATGTGGAC
Found at i:77302984 original size:61 final size:61
Alignment explanation
Indices: 77302912--77303053 Score: 266
Period size: 61 Copynumber: 2.3 Consensus size: 61
77302902 ATATGAGAAA
*
77302912 GCCTTTGTGGCTATCTAATGTTATATGAGGATGCCTTTGTGGATCTATATGTTATGTGGAC
1 GCCTTTGTGGCTATCTAATGTTATATGAGGATGCCTTTGAGGATCTATATGTTATGTGGAC
*
77302973 GCTTTTGTGGCTATCTAATGTTATATGAGGATGCCTTTGAGGATCTATATGTTATGTGGAC
1 GCCTTTGTGGCTATCTAATGTTATATGAGGATGCCTTTGAGGATCTATATGTTATGTGGAC
77303034 GCCTTTGTGGCTATCTAATG
1 GCCTTTGTGGCTATCTAATG
77303054 ATGTATGGAT
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
61 78 1.00
ACGTcount: A:0.20, C:0.13, G:0.26, T:0.41
Consensus pattern (61 bp):
GCCTTTGTGGCTATCTAATGTTATATGAGGATGCCTTTGAGGATCTATATGTTATGTGGAC
Found at i:77302996 original size:30 final size:30
Alignment explanation
Indices: 77302912--77303081 Score: 168
Period size: 30 Copynumber: 5.6 Consensus size: 30
77302902 ATATGAGAAA
*
77302912 GCCTTTGTGGCTATCTAATGTTATATGAGGAT
1 GCCTTTGTGGCTATCTAATG-T-TATGTGGAT
*
77302944 GCCTTTGTGG--ATCTATATGTTATGTGGAC
1 GCCTTTGTGGCTATCTA-ATGTTATGTGGAT
* *
77302973 GCTTTTGTGGCTATCTAATGTTATATGAGGAT
1 GCCTTTGTGGCTATCTAATG-T-TATGTGGAT
* *
77303005 GCCTTTGAGG--ATCTATATGTTATGTGGAC
1 GCCTTTGTGGCTATCTA-ATGTTATGTGGAT
* * *
77303034 GCCTTTGTGGCTATCTAATGATGTATGGAT
1 GCCTTTGTGGCTATCTAATGTTATGTGGAT
*
77303064 GCCTCTGTGGCTATCTAA
1 GCCTTTGTGGCTATCTAA
77303082 GTCAAGTGGA
Statistics
Matches: 115, Mismatches: 15, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
29 32 0.28
30 41 0.36
31 17 0.15
32 25 0.22
ACGTcount: A:0.20, C:0.14, G:0.26, T:0.40
Consensus pattern (30 bp):
GCCTTTGTGGCTATCTAATGTTATGTGGAT
Found at i:77303080 original size:61 final size:60
Alignment explanation
Indices: 77302912--77303073 Score: 245
Period size: 61 Copynumber: 2.7 Consensus size: 60
77302902 ATATGAGAAA
*
77302912 GCCTTTGTGGCTATCTAATGTTATATGAGGATGCCTTTGTGGATCTATATGTTATGTGGAC
1 GCCTTTGTGGCTATCTAATGATATAT-AGGATGCCTTTGTGGATCTATATGTTATGTGGAC
* * *
77302973 GCTTTTGTGGCTATCTAATGTTATATGAGGATGCCTTTGAGGATCTATATGTTATGTGGAC
1 GCCTTTGTGGCTATCTAATGATATAT-AGGATGCCTTTGTGGATCTATATGTTATGTGGAC
* *
77303034 GCCTTTGTGGCTATCTAATGATGTAT-GGATGCCTCTGTGG
1 GCCTTTGTGGCTATCTAATGATATATAGGATGCCTTTGTGG
77303074 CTATCTAAGT
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
59 12 0.13
61 82 0.87
ACGTcount: A:0.19, C:0.14, G:0.27, T:0.40
Consensus pattern (60 bp):
GCCTTTGTGGCTATCTAATGATATATAGGATGCCTTTGTGGATCTATATGTTATGTGGAC
Found at i:77309515 original size:29 final size:29
Alignment explanation
Indices: 77309452--77309519 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
77309442 TAATCAACCG
*
77309452 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
77309481 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
77309510 CGCACACTTA
1 CGCACACTTA
77309520 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:77309631 original size:174 final size:174
Alignment explanation
Indices: 77309341--77309668 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
77309331 AACTCAAGGT
* *
77309341 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
77309406 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
77309471 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
77309515 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
77309580 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGAGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
77309645 ACTTTAAACTCACACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
77309669 TGTACAATTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGAGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:77309662 original size:29 final size:29
Alignment explanation
Indices: 77309628--77309699 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
77309618 ATCAACCGCG
* * *
77309628 CACACTTAGTGCCATGCACTTTAAACTCA
1 CACACTTAGTGCCATACAATTTAAACCCA
** *
77309657 CACACTTAGTGCTGTACAATTTAAACCCG
1 CACACTTAGTGCCATACAATTTAAACCCA
77309686 CACACTTAGTGCCA
1 CACACTTAGTGCCA
77309700 ATCTCATGAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (29 bp):
CACACTTAGTGCCATACAATTTAAACCCA
Found at i:77317621 original size:40 final size:41
Alignment explanation
Indices: 77317568--77317664 Score: 121
Period size: 40 Copynumber: 2.4 Consensus size: 41
77317558 TATCTCGGTA
77317568 TCGCACACTTAGTGCC-TCATATAG-TCGAAGCTA-TTCCAAC
1 TCGCACACTTAGTGCCAT-ATATAGCT-GAAGCTATTTCCAAC
* * *
77317608 TCGCACACTTAGTGCCATTTGTAGCTGAAGCTATTTCGAAC
1 TCGCACACTTAGTGCCATATATAGCTGAAGCTATTTCCAAC
77317649 -CGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
77317665 AACATAGTTG
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
40 43 0.84
41 8 0.16
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (41 bp):
TCGCACACTTAGTGCCATATATAGCTGAAGCTATTTCCAAC
Found at i:77325085 original size:40 final size:40
Alignment explanation
Indices: 77325037--77325126 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 40
77325027 GGTATCGCAA
*
77325037 ACTTAGTGCC-TAATATAGCCGAAGCTA-TTCTAACTTGCAC
1 ACTTAGTGCCAT-ATATAGCCGAAGCTATTTCAAAC-TGCAC
* * *
77325077 ACTTAGTGCCATTTGTAGCTGAAGCTATTTCAAACTGCAC
1 ACTTAGTGCCATATATAGCCGAAGCTATTTCAAACTGCAC
77325117 ACTTAGTGCC
1 ACTTAGTGCC
77325127 GAACATAGTC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
40 37 0.84
41 7 0.16
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (40 bp):
ACTTAGTGCCATATATAGCCGAAGCTATTTCAAACTGCAC
Found at i:77342177 original size:49 final size:49
Alignment explanation
Indices: 77342105--77342206 Score: 186
Period size: 49 Copynumber: 2.1 Consensus size: 49
77342095 AAAATAAGTT
77342105 AAAAGCCATGAATGAACTCCCATATGAACGAAAGAGTAAGTGTAAAGAA
1 AAAAGCCATGAATGAACTCCCATATGAACGAAAGAGTAAGTGTAAAGAA
* *
77342154 AAAAGCCATGAATGAACTCCCATATGATCGGAAGAGTAAGTGTAAAGAA
1 AAAAGCCATGAATGAACTCCCATATGAACGAAAGAGTAAGTGTAAAGAA
77342203 AAAA
1 AAAA
77342207 AGGATTTGGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.49, C:0.14, G:0.21, T:0.17
Consensus pattern (49 bp):
AAAAGCCATGAATGAACTCCCATATGAACGAAAGAGTAAGTGTAAAGAA
Found at i:77343532 original size:19 final size:19
Alignment explanation
Indices: 77343508--77343547 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
77343498 GATTTATAAA
77343508 TGTTTATTAGTTATTTAAT
1 TGTTTATTAGTTATTTAAT
77343527 TGTTTATTAGTTATTTAAT
1 TGTTTATTAGTTATTTAAT
77343546 TG
1 TG
77343548 CTATGAATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (19 bp):
TGTTTATTAGTTATTTAAT
Found at i:77343716 original size:43 final size:44
Alignment explanation
Indices: 77343667--77343833 Score: 180
Period size: 43 Copynumber: 3.9 Consensus size: 44
77343657 GATTATCGAG
* *
77343667 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
*
77343711 -TGTGATTACATGTAAGACCATGTCTAGGACATTAGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
* * * * * * *
77343753 ATATGATTTCGTATAAGACCCTGTCTAGGAAAGTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
* * * *
77343796 ATGTGATAACATGTAAGACCGTATCTAGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCAT
77343834 TGTACGAGCT
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 7 0.07
43 95 0.93
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
Found at i:77350615 original size:54 final size:54
Alignment explanation
Indices: 77350551--77350758 Score: 231
Period size: 53 Copynumber: 3.9 Consensus size: 54
77350541 TTGGTAAGAT
* * *
77350551 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
77350605 AAGGAAATCATGTAAGACCATGTCAAGATATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * * *
77350660 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGACATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
77350713 AAGGATACCATGTAAGACCATGTCATGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
77350759 AAAAAGGAAA
Statistics
Matches: 130, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
52 4 0.03
53 41 0.32
54 41 0.32
55 40 0.31
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:77350680 original size:55 final size:54
Alignment explanation
Indices: 77350551--77350747 Score: 236
Period size: 54 Copynumber: 3.6 Consensus size: 54
77350541 TTGGTAAGAT
* * * *
77350551 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
77350605 AAGGAAATCATGTAAGACCATGTCAAGATATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
77350660 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGACATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
77350713 AAGGATACCATGTAAGACCATGTCATGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
77350748 ATGGTAAGTT
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 41 0.34
55 40 0.33
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:77353347 original size:47 final size:48
Alignment explanation
Indices: 77353286--77353554 Score: 313
Period size: 47 Copynumber: 5.7 Consensus size: 48
77353276 TATGAAAGCC
*
77353286 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
* * *
77353334 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGAGCT
* *
77353380 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGCCGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
* * *
77353428 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TATGAGATGATA-TT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGACGAGAGCT
* * *
77353473 CAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGA-TATGAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA-GAGCT
* *
77353521 AGTGTAAGACCATGTCTGGGACACGGTATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
77353555 CCTTACCCAC
Statistics
Matches: 188, Mismatches: 22, Indels: 22
0.81 0.09 0.09
Matches are distributed among these distances:
45 2 0.01
46 52 0.28
47 91 0.48
48 43 0.23
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
Found at i:77353396 original size:94 final size:92
Alignment explanation
Indices: 77353235--77353543 Score: 390
Period size: 94 Copynumber: 3.3 Consensus size: 92
77353225 ATTTGTTTGT
* ** * *
77353235 GAGCTAGTGTAAGACATGTCTCGGACATGCATC-ATTCACATTATGAAAGCCAGTGTAAGACCAT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTC-GA-GATG-AAGCCAGTGTAAGACCAT
77353299 GTCTAGGACATGGCATCGGCATTGAGACGA
63 GTCTAGGACATGGCATCGGCATTGAGACGA
*
77353329 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCCAGTGTAAGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTCGAGATG-AAGCCAGTGTAAGACCATG
*
77353394 TCTAGGACATGGCATCGGCATTGAGCCGA
64 TCTAGGACATGGCATCGGCATTGAGACGA
* **
77353423 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGATATTCAGTGTAAGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGATGA-AGCCAGTGTAAGACCATG
* * *
77353488 TCTGGGACATGGCATCGAC-TTGAGA-TA
64 TCTAGGACATGGCATCGGCATTGAGACGA
*
77353515 TGAGCCAGTGTAAGACCATGTCTGGGACA
1 -GAGCTAGTGTAAGA-CATGTCTGGGACA
77353544 CGGTATCGGC
Statistics
Matches: 192, Mismatches: 17, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
92 1 0.01
93 21 0.11
94 167 0.87
95 1 0.01
96 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (92 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGAAGCCAGTGTAAGACCATGTC
TAGGACATGGCATCGGCATTGAGACGA
Found at i:77353493 original size:141 final size:142
Alignment explanation
Indices: 77353286--77353554 Score: 359
Period size: 141 Copynumber: 1.9 Consensus size: 142
77353276 TATGAAAGCC
77353286 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTG
* * *
77353351 GGACAT-GCATCGGCCTCGAGACGTAAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCAT
66 GGACATGGCATC-GACTCGAGACATAAGCCAGTGTAAGACCATGTCTAGGACACGGCATCGGCAT
77353415 TGAGCCGAGAGCT
130 TGAGCCGAGAGCT
* * * *
77353428 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TATGAGATGATA-TTCAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCAT-TGAGACGAGAGCT-AGTGTAAGA-CATGT
* * * * *
77353489 CTGGGACATGGCATCGACTTGAGATATGAGCCAGTGTAAGACCATGTCTGGGACACGGTATCGGC
63 CTGGGACATGGCATCGACTCGAGACATAAGCCAGTGTAAGACCATGTCTAGGACACGGCATCGGC
77353554 A
128 A
77353555 CCTTACCCAC
Statistics
Matches: 111, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
139 2 0.02
140 25 0.23
141 70 0.63
142 14 0.13
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (142 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTG
GGACATGGCATCGACTCGAGACATAAGCCAGTGTAAGACCATGTCTAGGACACGGCATCGGCATT
GAGCCGAGAGCT
Found at i:77355676 original size:38 final size:38
Alignment explanation
Indices: 77355633--77355841 Score: 150
Period size: 38 Copynumber: 5.0 Consensus size: 38
77355623 TTTCAAATTA
*
77355633 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
*
77355671 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* *
77355709 A-ATGAATCAATATATGTATCTGTGGCATATCCACTTAGCACCACGTT
1 ACATG------TATA---A-CCGTGGTATATCCACTTAGCACCACGTT
* *
77355756 ACATGTATCAATATGTGTAATCGTGGTATATCCACTTAGCACCACGTC
1 ACATG------TA----TAACCGTGGTATATCCACTTAGCACCACGTT
* * *
77355804 ACACGTATAACAGTGGTATATCTACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
77355842 TTTTTCATTC
Statistics
Matches: 141, Mismatches: 15, Indels: 30
0.76 0.08 0.16
Matches are distributed among these distances:
37 3 0.02
38 64 0.45
42 2 0.01
43 3 0.02
46 1 0.01
47 27 0.19
48 38 0.27
49 1 0.01
52 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:77355788 original size:48 final size:48
Alignment explanation
Indices: 77355673--77355811 Score: 192
Period size: 48 Copynumber: 2.9 Consensus size: 48
77355663 ACCACGTTAC
* * *
77355673 ATGTTTAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
77355720 ATATGT-ATCTGTGGCATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAATC-GTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
77355768 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTCACACGTAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTAT
77355812 AACAGTGGTA
Statistics
Matches: 80, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
46 2 0.03
47 30 0.38
48 45 0.56
49 3 0.04
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (48 bp):
ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:77358449 original size:18 final size:19
Alignment explanation
Indices: 77358422--77358459 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
77358412 TTTATAGTTT
77358422 TAAATAATTTTGGGTAAAA
1 TAAATAATTTTGGGTAAAA
*
77358441 TAAAT-ATTTTGGGTCAAA
1 TAAATAATTTTGGGTAAAA
77358459 T
1 T
77358460 TATAATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.42, C:0.03, G:0.16, T:0.39
Consensus pattern (19 bp):
TAAATAATTTTGGGTAAAA
Found at i:77362507 original size:28 final size:29
Alignment explanation
Indices: 77362448--77362515 Score: 111
Period size: 28 Copynumber: 2.4 Consensus size: 29
77362438 TCAAGCCATA
* *
77362448 TGGGTCATATGAATGTGATTTGGGCCTAG
1 TGGGCCATATGAATGAGATTTGGGCCTAG
77362477 TGGGCCATATGAATGAGA-TTGGGCCTAG
1 TGGGCCATATGAATGAGATTTGGGCCTAG
77362505 TGGGCCATATG
1 TGGGCCATATG
77362516 CATGTATGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
28 21 0.57
29 16 0.43
ACGTcount: A:0.22, C:0.13, G:0.35, T:0.29
Consensus pattern (29 bp):
TGGGCCATATGAATGAGATTTGGGCCTAG
Done.