Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 229 of 290
Found at i:79150381 original size:135 final size:135
Alignment explanation
Indices: 79150130--79150404 Score: 516
Period size: 135 Copynumber: 2.0 Consensus size: 135
79150120 ATTTTTTTTC
79150130 TTCTT-CTTGAAGGTTGAAATTTGGGTTGTTATTAAGGAGGTGCCGAATGTGGTCCTTGAAGGGC
1 TTCTTGCTTGAAGGTTGAAATTTGGGTTGTTATTAAGGAGGTGCCGAATGTGGTCCTTGAAGGGC
*
79150194 CTTGAGGAACAATATATGTGGCTTGGGTTATAACATTCGGCCATGGTAGTTTGAGGATTAAGGAT
66 CTTGAGGAACAATATATGTGGCTTGGGTTATAACATTCGGCCACGGTAGTTTGAGGATTAAGGAT
79150259 TTTAT
131 TTTAT
*
79150264 TTCTTGCTTGAAGGTTGAAATTTGGGTTGTTATTAAGGAGGTGCTGAATGTGGTCCTTGAAGGGC
1 TTCTTGCTTGAAGGTTGAAATTTGGGTTGTTATTAAGGAGGTGCCGAATGTGGTCCTTGAAGGGC
*
79150329 CTTGAGGAACAATATATGTGGCTTGGGTTATAACATTCGGCCACGGTCGTTTGAGGATTAAGGAT
66 CTTGAGGAACAATATATGTGGCTTGGGTTATAACATTCGGCCACGGTAGTTTGAGGATTAAGGAT
79150394 TTTAT
131 TTTAT
79150399 TTCTTG
1 TTCTTG
79150405 TTAAAATTGG
Statistics
Matches: 137, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
134 5 0.04
135 132 0.96
ACGTcount: A:0.23, C:0.11, G:0.30, T:0.36
Consensus pattern (135 bp):
TTCTTGCTTGAAGGTTGAAATTTGGGTTGTTATTAAGGAGGTGCCGAATGTGGTCCTTGAAGGGC
CTTGAGGAACAATATATGTGGCTTGGGTTATAACATTCGGCCACGGTAGTTTGAGGATTAAGGAT
TTTAT
Found at i:79155382 original size:42 final size:42
Alignment explanation
Indices: 79155323--79155402 Score: 151
Period size: 42 Copynumber: 1.9 Consensus size: 42
79155313 CCACCCGGGA
79155323 AAGGCTAATGTGGTTGCGGACGCCTTAAGCCGAAAATCGCTG
1 AAGGCTAATGTGGTTGCGGACGCCTTAAGCCGAAAATCGCTG
*
79155365 AAGGCTAATGTGGTTGCGGACGCCTTAAGCCGGAAATC
1 AAGGCTAATGTGGTTGCGGACGCCTTAAGCCGAAAATC
79155403 ATTGTTTGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.21
Consensus pattern (42 bp):
AAGGCTAATGTGGTTGCGGACGCCTTAAGCCGAAAATCGCTG
Found at i:79165243 original size:27 final size:27
Alignment explanation
Indices: 79165213--79165294 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 27
79165203 ATGAAAGTAG
79165213 ATTCATCAAGGTTCGATTACATAATTT
1 ATTCATCAAGGTTCGATTACATAATTT
* ** * **
79165240 ATTCA-CTA--TTTAATTCCACT-CCT-
1 ATTCATCAAGGTTCGATTACA-TAATTT
79165263 ATTCATCAAGGTTCGATTACATAATTT
1 ATTCATCAAGGTTCGATTACATAATTT
79165290 ATTCA
1 ATTCA
79165295 CTATCCCTGT
Statistics
Matches: 37, Mismatches: 12, Indels: 12
0.61 0.20 0.20
Matches are distributed among these distances:
23 5 0.14
24 10 0.27
25 2 0.05
26 10 0.27
27 10 0.27
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (27 bp):
ATTCATCAAGGTTCGATTACATAATTT
Found at i:79166175 original size:32 final size:32
Alignment explanation
Indices: 79166129--79166193 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
79166119 CATATCCCCA
79166129 TATTGGGATGTTTTTCGAGTATTCGCTGGAAT
1 TATTGGGATGTTTTTCGAGTATTCGCTGGAAT
* *
79166161 TATTTGGATGTTTTTCGAGTGTTCGCTGGAAT
1 TATTGGGATGTTTTTCGAGTATTCGCTGGAAT
79166193 T
1 T
79166194 TTACAGCAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.17, C:0.09, G:0.28, T:0.46
Consensus pattern (32 bp):
TATTGGGATGTTTTTCGAGTATTCGCTGGAAT
Found at i:79166353 original size:40 final size:40
Alignment explanation
Indices: 79166262--79166431 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
79166252 TCCTCGTTCA
* * * * *
79166262 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
79166301 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
79166341 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
79166381 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
79166421 AAGGCCTTCGG
1 AATGCCTTCGG
79166432 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:79167399 original size:39 final size:39
Alignment explanation
Indices: 79167345--79167421 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
79167335 ACAACTAAAA
*
79167345 CATGCATGCCTCTCATGGAACATCACCAAACATACCTTC
1 CATGCATGCATCTCATGGAACATCACCAAACATACCTTC
*
79167384 CATGCATGCATCTCATGGAACATCATCAAACATACCTT
1 CATGCATGCATCTCATGGAACATCACCAAACATACCTT
79167422 AGCCTAGCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.32, C:0.32, G:0.10, T:0.25
Consensus pattern (39 bp):
CATGCATGCATCTCATGGAACATCACCAAACATACCTTC
Found at i:79173894 original size:40 final size:40
Alignment explanation
Indices: 79173794--79174058 Score: 277
Period size: 40 Copynumber: 6.7 Consensus size: 40
79173784 GCTCCTCGTT
* * * *
79173794 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
79173834 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
79173873 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
79173913 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
79173953 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
79173993 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
79174034 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
79174059 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:79174018 original size:80 final size:80
Alignment explanation
Indices: 79173761--79174058 Score: 245
Period size: 80 Copynumber: 3.7 Consensus size: 80
79173751 AAATCACGTA
* ** * * *
79173761 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
** *
79173823 AGTAACTCACAC-AATG
64 AACAACTCGCACAAATG
* * * *
79173839 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
79173902 AACAACTCGCACGAATG
64 AACAACTCGCACAAATG
* *
79173919 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
** *
79173983 -GTATCTCGCACAAATG
64 AACAACTCGCACAAATG
** * * *
79173999 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
79174059 CAGCATTCAA
Statistics
Matches: 180, Mismatches: 28, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 49 0.27
80 105 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
CAACTCGCACAAATG
Found at i:79174067 original size:41 final size:41
Alignment explanation
Indices: 79173990--79174067 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
79173980 TTTGTATCTC
* * *
79173990 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
79174031 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
79174068 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:79182307 original size:15 final size:15
Alignment explanation
Indices: 79182284--79182317 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
79182274 CCAGGAACAT
*
79182284 CTCCTATACCAATAG
1 CTCCGATACCAATAG
*
79182299 CTCCGATACCGATAG
1 CTCCGATACCAATAG
79182314 CTCC
1 CTCC
79182318 TTACAAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.38, G:0.12, T:0.24
Consensus pattern (15 bp):
CTCCGATACCAATAG
Found at i:79187834 original size:21 final size:20
Alignment explanation
Indices: 79187810--79187849 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
79187800 CTTGAGCTAT
79187810 TGAATGCTTGATGATGAAATA
1 TGAATGCTTGATGAT-AAATA
**
79187831 TGAATTTTTGATGATAAAT
1 TGAATGCTTGATGATAAAT
79187850 TAACAAGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.38, C:0.03, G:0.20, T:0.40
Consensus pattern (20 bp):
TGAATGCTTGATGATAAATA
Found at i:79188537 original size:43 final size:44
Alignment explanation
Indices: 79188489--79188638 Score: 202
Period size: 43 Copynumber: 3.5 Consensus size: 44
79188479 TATGTGTTAT
* *
79188489 CGTGTAAGACCACGTC-AGGACATTGGCATCGATTTTTGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTA
*
79188532 CGTGTAAGACCATGTCTGGGACATTGGCATC-ATATTTGATTT-
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTA
* *
79188574 CGTGTAAGAACC-TGTCTGGGACAGTGGCATCGATATTTGA-TTA
1 CGTGTAAG-ACCACGTCTGGGACATTGGCATCGATATTTGATTTA
*
79188617 CATGTAAGACCACGTCTGGGAC
1 CGTGTAAGACCACGTCTGGGAC
79188639 GTTAGCATTG
Statistics
Matches: 96, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
42 31 0.32
43 52 0.54
44 13 0.14
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (44 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTA
Found at i:79200015 original size:22 final size:23
Alignment explanation
Indices: 79199964--79200062 Score: 116
Period size: 22 Copynumber: 4.4 Consensus size: 23
79199954 ATAGCTTGTA
* *
79199964 AGAGCTTACTATTTCAGCTCATT
1 AGAGCTTACTGTTTCAGCTCAAT
*
79199987 AGAGCTTA-TCG-TTCGGCTCAAT
1 AGAGCTTACT-GTTTCAGCTCAAT
*
79200009 AGTGCTTACTGTTTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
79200032 AGAGCTTACTGTTT-AGCTCAA-
1 AGAGCTTACTGTTTCAGCTCAAT
79200053 AGGAGCTTAC
1 A-GAGCTTAC
79200063 CAACCATGAC
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
21 1 0.02
22 33 0.50
23 32 0.48
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:79200061 original size:45 final size:45
Alignment explanation
Indices: 79199964--79200062 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 45
79199954 ATAGCTTGTA
* *
79199964 AGAGCTTACTATTTCAGCTCATTAGAGCTTATCGTTCGGCTCAAT
1 AGAGCTTACTATTTCAGCTCAATAGAGCTTATCGTTCAGCTCAAT
* * *
79200009 AGTGCTTACTGTTTCAGCTCAATAGAGCTTA-CTGTTTAGCTCAA-
1 AGAGCTTACTATTTCAGCTCAATAGAGCTTATC-GTTCAGCTCAAT
79200053 AGGAGCTTAC
1 A-GAGCTTAC
79200063 CAACCATGAC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 2 0.04
45 44 0.96
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (45 bp):
AGAGCTTACTATTTCAGCTCAATAGAGCTTATCGTTCAGCTCAAT
Found at i:79205157 original size:26 final size:26
Alignment explanation
Indices: 79205127--79205238 Score: 75
Period size: 26 Copynumber: 4.3 Consensus size: 26
79205117 CATTAGGGCA
*
79205127 TAGCAGGCTTTGTGTCAGTGTATATT
1 TAGCAGGCTTCGTGTCAGTGTATATT
* * * *
79205153 TAGCAAGCTTCAT-CCTGGTGTATATT
1 TAGCAGGCTTCGTGTC-AGTGTATATT
* * *
79205179 TAGCAAGCTTCGGGATGA-TGTATATT
1 TAGCAGGCTTCGTG-TCAGTGTATATT
* * * *
79205205 TAGTAGGCTTTGTGACAGTGTTTTATT
1 TAGCAGGCTTCGTGTCAGTG-TATATT
79205232 TAGCAGG
1 TAGCAGG
79205239 TATTATGTAC
Statistics
Matches: 63, Mismatches: 18, Indels: 9
0.70 0.20 0.10
Matches are distributed among these distances:
25 2 0.03
26 50 0.79
27 11 0.17
ACGTcount: A:0.22, C:0.12, G:0.26, T:0.39
Consensus pattern (26 bp):
TAGCAGGCTTCGTGTCAGTGTATATT
Found at i:79208699 original size:40 final size:40
Alignment explanation
Indices: 79208601--79208903 Score: 405
Period size: 40 Copynumber: 7.6 Consensus size: 40
79208591 TCCTCGTTCA
* * * * *
79208601 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
79208640 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
79208680 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
79208720 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
79208760 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
79208800 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
79208840 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
79208880 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
79208904 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:79226831 original size:43 final size:42
Alignment explanation
Indices: 79226699--79226882 Score: 229
Period size: 40 Copynumber: 4.5 Consensus size: 42
79226689 ACCCAAGTAT
* * *
79226699 CTTCGGGATTTAG-CCGGATATAG-CA-ACTCACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACACTCGCACAAATGC
* * **
79226738 CTTCGGGTCTTAGCCCGGATATAGT--CACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACACTCGCACAAATGC
*
79226778 CTTCGGGACTTAGCCCGGGTATAGTAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAAC-ACTCGCACAAATGC
79226821 CTTCGGGACTTAGCCCGGATATAGTAAC-CT-GCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACACTCGCACAAATGC
*
79226861 CTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATAT
79226883 CATCCGAATA
Statistics
Matches: 126, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
39 11 0.09
40 74 0.59
41 2 0.02
42 1 0.01
43 38 0.30
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (42 bp):
CTTCGGGACTTAGCCCGGATATAGTAACACTCGCACAAATGC
Found at i:79226834 original size:83 final size:83
Alignment explanation
Indices: 79226724--79226876 Score: 245
Period size: 83 Copynumber: 1.8 Consensus size: 83
79226714 GGATATAGCA
* * **
79226724 ACTCACACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCATGAATGCCTTCGGGACT
1 ACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACCT-GCACAAATGCCTTCGGGACT
79226788 TAGCCCGGGTATAGTAACT
65 TAGCCCGGGTATAGTAACT
*
79226807 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACCTGCACAAATGCCTTCGGGACTT
1 ACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACCTGCACAAATGCCTTCGGGACTT
79226872 AGCCC
66 AGCCC
79226877 AGATATCATC
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
83 62 0.97
84 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (83 bp):
ACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACCTGCACAAATGCCTTCGGGACTT
AGCCCGGGTATAGTAACT
Found at i:79230007 original size:29 final size:29
Alignment explanation
Indices: 79229973--79230071 Score: 101
Period size: 29 Copynumber: 3.4 Consensus size: 29
79229963 GAAAAGACGT
* *
79229973 CTTTGTGGCGATTTCTATTAAAAGGAAGC
1 CTTTGTGGCGATATCTGTTAAAAGGAAGC
* * *
79230002 ATTTGTAGCAATATCTGTTAAAAGGAAGC
1 CTTTGTGGCGATATCTGTTAAAAGGAAGC
* * **
79230031 CTTTGGGGTGACCTCTGTTAAAAGGATA-C
1 CTTTGTGGCGATATCTGTTAAAAGGA-AGC
79230060 CTTTGTGGCGAT
1 CTTTGTGGCGAT
79230072 CTTGTGGTTG
Statistics
Matches: 54, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 53 0.98
30 1 0.02
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (29 bp):
CTTTGTGGCGATATCTGTTAAAAGGAAGC
Found at i:79231434 original size:43 final size:41
Alignment explanation
Indices: 79231381--79231500 Score: 118
Period size: 43 Copynumber: 2.9 Consensus size: 41
79231371 ATATGAGATA
* * *
79231381 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGAT-TGAGATT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCGATCT--GATT
*
79231423 TACGTATAAGACCATGTCTAGGACATCA-GCATCGTATCTGATT
1 T-CGTATAAGACCATGTCTGGGACA-CAGGCATCG-ATCTGATT
* * *
79231466 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGAT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCGAT
79231501 ATTGAATTAC
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
41 3 0.05
42 27 0.42
43 30 0.46
44 4 0.06
45 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
TCGTATAAGACCATGTCTGGGACACAGGCATCGATCTGATT
Found at i:79231489 original size:42 final size:41
Alignment explanation
Indices: 79231376--79231500 Score: 128
Period size: 42 Copynumber: 3.0 Consensus size: 41
79231366 CATCTATATG
* * *
79231376 AGATATCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATT
1 AGATTTCGTGTAAGACCATGTCTGGGACACAGGCATCGATT
* *
79231417 GAGATTTACGTATAAGACCATGTCTAGGACATCA-GCATCGTATCT
1 -AGATTT-CGTGTAAGACCATGTCTGGGACA-CAGGCATCG-AT-T
* *
79231462 -GATTTCGTGTAAGACCCTGTCTGGGACAGAGGCATCGAT
1 AGATTTCGTGTAAGACCATGTCTGGGACACAGGCATCGAT
79231501 ATTGAATTAC
Statistics
Matches: 69, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
41 3 0.04
42 31 0.45
43 30 0.43
44 4 0.06
45 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (41 bp):
AGATTTCGTGTAAGACCATGTCTGGGACACAGGCATCGATT
Found at i:79231531 original size:85 final size:85
Alignment explanation
Indices: 79231381--79231537 Score: 212
Period size: 85 Copynumber: 1.8 Consensus size: 85
79231371 ATATGAGATA
* * * *
79231381 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTAGGA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACGTCTAGGA
79231446 CATCAGCATCGTATCTGATT
66 CATCAGCATCGTATCTGATT
* *
79231466 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGT-TCA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCG--ATTGAGATTTACATATAAGACCACGTCT-A
79231528 GGACATCAGC
63 GGACATCAGC
79231538 GTTGTACTTG
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
84 1 0.02
85 56 0.89
86 1 0.02
87 5 0.08
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACGTCTAGGA
CATCAGCATCGTATCTGATT
Found at i:79233692 original size:22 final size:22
Alignment explanation
Indices: 79233617--79233684 Score: 118
Period size: 22 Copynumber: 3.1 Consensus size: 22
79233607 TCCAAACTTC
79233617 TACCAATACATGGGAACCCTTT
1 TACCAATACATGGGAACCCTTT
* *
79233639 TACCAAAACATGGGAACCTTTT
1 TACCAATACATGGGAACCCTTT
79233661 TACCAATACATGGGAACCCTTT
1 TACCAATACATGGGAACCCTTT
79233683 TA
1 TA
79233685 TCGATACAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (22 bp):
TACCAATACATGGGAACCCTTT
Found at i:79235232 original size:17 final size:16
Alignment explanation
Indices: 79235199--79235238 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
79235189 TGATTTATTA
79235199 AATAAAA-ATTATCTT
1 AATAAAATATTATCTT
*
79235214 AATTAAAATATTATTTT
1 AA-TAAAATATTATCTT
79235231 AATAAAAT
1 AATAAAAT
79235239 GTTTAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 2 0.09
16 11 0.50
17 9 0.41
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
AATAAAATATTATCTT
Found at i:79235402 original size:32 final size:31
Alignment explanation
Indices: 79235365--79235437 Score: 92
Period size: 32 Copynumber: 2.3 Consensus size: 31
79235355 ACTATAAACT
* *
79235365 TATAAATTAATTACTTGAATTCAATAGCTCA
1 TATAAATTAATTAATTGAATTCAATAACTCA
* **
79235396 TAATAAATTAATTAATTTAATTTGATAACTCA
1 T-ATAAATTAATTAATTGAATTCAATAACTCA
79235428 TATAAATTAA
1 TATAAATTAA
79235438 AAAAACTAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
31 10 0.28
32 26 0.72
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.41
Consensus pattern (31 bp):
TATAAATTAATTAATTGAATTCAATAACTCA
Found at i:79235654 original size:82 final size:83
Alignment explanation
Indices: 79235515--79235675 Score: 270
Period size: 82 Copynumber: 1.9 Consensus size: 83
79235505 TAAATGCAAT
*
79235515 ATGTAAGCACATGCTATATGTATCTTTTAGCTTTGTTTATTTGATTCTCACT-TTTTTTTAACAT
1 ATGTAAGCACATGCTATATGTATCTTTTAGCTTTGTTTATTTGAGTCTCACTCTTTTTTTAACAT
79235579 AATTTTACTTTCAAATAA
66 AATTTTACTTTCAAATAA
* *
79235597 ATGTAAGCACTTGCTATATGTATCTTTTAGTTTTGTTTATTTGAGTCTCACTCTTTTTTTTTAAC
1 ATGTAAGCACATGCTATATGTATCTTTTAGCTTTGTTTATTTGAGTCTCACTC--TTTTTTTAAC
79235662 ATAATTTTACTTTC
64 ATAATTTTACTTTC
79235676 TTTATTTGAT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
82 49 0.67
85 24 0.33
ACGTcount: A:0.25, C:0.14, G:0.09, T:0.52
Consensus pattern (83 bp):
ATGTAAGCACATGCTATATGTATCTTTTAGCTTTGTTTATTTGAGTCTCACTCTTTTTTTAACAT
AATTTTACTTTCAAATAA
Found at i:79236120 original size:20 final size:20
Alignment explanation
Indices: 79236082--79236120 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
79236072 TGATTCTTTA
**
79236082 ACTCGACTCGAAATTTTTTG
1 ACTCGACTCGAAAAATTTTG
*
79236102 ACTCGATTCGAAAAATTTT
1 ACTCGACTCGAAAAATTTT
79236121 CAAATTGAGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (20 bp):
ACTCGACTCGAAAAATTTTG
Found at i:79249861 original size:14 final size:14
Alignment explanation
Indices: 79249837--79249878 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
79249827 AATCTTCAGG
79249837 TATATTTTATTATAT
1 TATA-TTTATTATAT
*
79249852 TTTATTTATTATAT
1 TATATTTATTATAT
*
79249866 TATATCTATTATA
1 TATATTTATTATA
79249879 ATTGGAAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 21 0.88
15 3 0.12
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (14 bp):
TATATTTATTATAT
Found at i:79249866 original size:9 final size:10
Alignment explanation
Indices: 79249837--79249870 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
79249827 AATCTTCAGG
79249837 TATATTTTAT
1 TATATTTTAT
79249847 TATATTTTAT
1 TATATTTTAT
*
79249857 T-TATTATAT
1 TATATTTTAT
79249866 TATAT
1 TATAT
79249871 CTATTATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TATATTTTAT
Found at i:79253109 original size:46 final size:46
Alignment explanation
Indices: 79253042--79253216 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
79253032 TGTAACCCGC
*
79253042 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
79253088 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * *
79253138 --TTCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
79253181 CCATAAGTGAACTCGGACTCAATTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
79253217 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 60 0.57
47 27 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:79253161 original size:93 final size:93
Alignment explanation
Indices: 79253049--79253220 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
79253039 CGCCCATAAG
* *
79253049 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
79253114 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* * *
79253142 CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAATTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
79253207 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
79253221 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:79258269 original size:45 final size:44
Alignment explanation
Indices: 79258202--79258291 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 44
79258192 AATCTCGAGT
*
79258202 TCCCTACACTGGCTGCAGAAGTATTCTGAGATTTAGGACCCACA
1 TCCCTACACTGGCTGCAAAAGTATTCTGAGATTTAGGACCCACA
79258246 TNCCCTACACTGGCTGCAAAAGTATTCTGAGATTTAGGACCCACA
1 T-CCCTACACTGGCTGCAAAAGTATTCTGAGATTTAGGACCCACA
79258291 T
1 T
79258292 TTTGCTTCTT
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 1 0.02
45 43 0.98
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (44 bp):
TCCCTACACTGGCTGCAAAAGTATTCTGAGATTTAGGACCCACA
Found at i:79266264 original size:42 final size:42
Alignment explanation
Indices: 79266154--79266308 Score: 195
Period size: 42 Copynumber: 3.7 Consensus size: 42
79266144 TACCACATCA
* * * * *
79266154 ATGCCATATCCTAGATATGGTCTTAAATGAGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
79266196 ATGCCTATAGCCCAGCTATGGTCTTACACGAAATATCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
*
79266239 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATAAT-G
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT-ATCG
*
79266281 ATGCCATATCCCAGTTATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
79266309 ATAGTCTCGG
Statistics
Matches: 98, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
42 62 0.63
43 36 0.37
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:79266284 original size:85 final size:84
Alignment explanation
Indices: 79266154--79266308 Score: 213
Period size: 85 Copynumber: 1.8 Consensus size: 84
79266144 TACCACATCA
* ** * *
79266154 ATGCCATATCCTAGATATGGTCTTAAATGAGATCTCGTATCGATGCCTATAGCCCAGCTATGGTC
1 ATGCCATATCCCAGATATGGTCTTAAACAAAATCTCATATCGATGCC-ATAGCCCAGCTATGGTC
79266219 TTACACGAAATATCATATCG
65 TTACACGAAATATCATATCG
* * *
79266239 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATAAT-GATGCCATATCCCAGTTATGGTC
1 ATGCCATATCCCAGATATGGTCTTAAACAAAATCTCAT-ATCGATGCCATAGCCCAGCTATGGTC
79266303 TTACAC
65 TTACAC
79266309 ATAGTCTCGG
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
84 21 0.34
85 38 0.62
86 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (84 bp):
ATGCCATATCCCAGATATGGTCTTAAACAAAATCTCATATCGATGCCATAGCCCAGCTATGGTCT
TACACGAAATATCATATCG
Found at i:79269699 original size:37 final size:37
Alignment explanation
Indices: 79269658--79269733 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
79269648 TGGATCAACA
79269658 TGGATACAATCACCTGAAACAATATATCCCAAAAATT
1 TGGATACAATCACCTGAAACAATATATCCCAAAAATT
* *
79269695 TGGATACCATCACCTGAAACAATATGTCCCAAAAATT
1 TGGATACAATCACCTGAAACAATATATCCCAAAAATT
79269732 TG
1 TG
79269734 ACTTCTCGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.42, C:0.22, G:0.11, T:0.25
Consensus pattern (37 bp):
TGGATACAATCACCTGAAACAATATATCCCAAAAATT
Found at i:79271454 original size:182 final size:182
Alignment explanation
Indices: 79271140--79271476 Score: 620
Period size: 182 Copynumber: 1.9 Consensus size: 182
79271130 ATAACAAGAA
*
79271140 TTGTAACACCCTGAATTTGGGCCTAGAAGTTTCAGGCCTTGAGCATTACAGCAGTTGAAGGTAGC
1 TTGTAACACCATGAATTTGGGCCTAGAAGTTTCAGGCCTTGAGCATTACAGCAGTTGAAGGTAGC
*
79271205 TTATAATATTTTGTTGTGCGTGTAAATTTCGCTAATGAAGGCTTGTTTTAGTGGTTAAGTGTGCT
66 TTATAATATTTTGTTGTGCGTGTAAATTTCGCTAATGAAGGCTTGTTTTAGTGGTTAAGTATGCT
*
79271270 GAGAAGTGTTGGAAAAGTCTTGGGTAGTAGGTAAGCTTTAAGGGAGGTAGAG
131 GAGAAGTGTTAGAAAAGTCTTGGGTAGTAGGTAAGCTTTAAGGGAGGTAGAG
*
79271322 TTGTAACACTATGAATTTGGGCCTAGAAGTTTCAGGCCTTGAGCATTACAGCAGTTGAAGGTAGC
1 TTGTAACACCATGAATTTGGGCCTAGAAGTTTCAGGCCTTGAGCATTACAGCAGTTGAAGGTAGC
*
79271387 TTATAATATTTTGTTGTGCGTGTAAATTTCGCTAATGAAGGCTTGTTTTAGTGTTTAAGTATGCT
66 TTATAATATTTTGTTGTGCGTGTAAATTTCGCTAATGAAGGCTTGTTTTAGTGGTTAAGTATGCT
*
79271452 GAGAAGTGTTAGAGAAGTCTTGGGT
131 GAGAAGTGTTAGAAAAGTCTTGGGT
79271477 TCAAATCTGG
Statistics
Matches: 149, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
182 149 1.00
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (182 bp):
TTGTAACACCATGAATTTGGGCCTAGAAGTTTCAGGCCTTGAGCATTACAGCAGTTGAAGGTAGC
TTATAATATTTTGTTGTGCGTGTAAATTTCGCTAATGAAGGCTTGTTTTAGTGGTTAAGTATGCT
GAGAAGTGTTAGAAAAGTCTTGGGTAGTAGGTAAGCTTTAAGGGAGGTAGAG
Found at i:79272841 original size:26 final size:27
Alignment explanation
Indices: 79272812--79272871 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
79272802 CCACATATAT
*
79272812 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * * *
79272838 ATATTTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
79272865 ATATCTG
1 ATATCTG
79272872 GAAGCCTCGC
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:79275560 original size:31 final size:32
Alignment explanation
Indices: 79275522--79275583 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
79275512 CTCGCTGCAA
* *
79275522 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
79275553 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
79275584 GTGACTTCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:79281009 original size:46 final size:46
Alignment explanation
Indices: 79280959--79281084 Score: 218
Period size: 46 Copynumber: 2.7 Consensus size: 46
79280949 TGGTTGAGCA
*
79280959 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
79281005 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
79281051 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
79281085 GGGGCGGGTT
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
45 2 0.03
46 75 0.97
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:79288546 original size:46 final size:46
Alignment explanation
Indices: 79288496--79288671 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
79288486 TGGTTGAGCA
79288496 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
79288542 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
79288587 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
79288635 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79288672 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:79288652 original size:93 final size:93
Alignment explanation
Indices: 79288493--79288664 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
79288483 GGATGGTTGA
* *
79288493 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79288558 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
79288586 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79288651 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
79288665 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79292079 original size:47 final size:49
Alignment explanation
Indices: 79292005--79292321 Score: 236
Period size: 47 Copynumber: 6.7 Consensus size: 49
79291995 CACTAATGCT
* *
79292005 GATGGCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATC-AAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACATCGAAGCC
* * *
79292052 GATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCGAAATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-ACATCGAAGCC
* * * * * * *
79292101 GACGCCATGTCCTAGACATAGTCATACACTAGCTC-TCACATATCTG-TGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAC--ATC-GAAGCC
* * *
79292151 GATGCCATGTCCCAGACATGGTCTTACACTGACACAT--C-TCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACATCGAAGCC
* * * * *
79292197 GATGCC-CGTCCTAGACAT-GTCTTACACTAGCT-TTCGTC-TC-AATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-ACATCGAA-GCC
* **
79292243 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCA-CATCGAAGCC
*
79292291 GATG-CATGTCCTAGACAT-GTCTTACACTGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC
79292322 ACACAAATAA
Statistics
Matches: 213, Mismatches: 38, Indels: 39
0.73 0.13 0.13
Matches are distributed among these distances:
43 1 0.00
44 11 0.05
45 12 0.06
46 38 0.18
47 55 0.26
48 26 0.12
49 35 0.16
50 33 0.15
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACATCGAAGCC
Found at i:79292178 original size:99 final size:95
Alignment explanation
Indices: 79292005--79292318 Score: 331
Period size: 94 Copynumber: 3.3 Consensus size: 95
79291995 CACTAATGCT
* * *
79292005 GATGGCATGTCCCAGACATGGTCTTACACTGGC-T-CATCCATCAA-GTCGATGCCATGTCCCAG
1 GATGCCATGTCCTAGACAT-GTCTTACACTAGCTTACAT--ATCAATGTCGATGCCATGTCCCAG
79292067 ACATGGTCTTACACTGACTATCGAAATCGAGGCC
63 ACATGGTCTTACACTGACTATC-AAATCGAGGCC
* * **
79292101 GACGCCATGTCCTAGACATAGTCATACACTAGCTCTCACATATCTGTGTCGATGCCATGTCCCAG
1 GATGCCATGTCCTAGACAT-GTCTTACACTAGCT-T-ACATATCAATGTCGATGCCATGTCCCAG
**
79292166 ACATGGTCTTACACTGAC-A-CATCTCGTA-GCC
63 ACATGGTCTTACACTGACTATCAAATCG-AGGCC
* * * * *
79292197 GATGCC-CGTCCTAGACATGTCTTACACTAGCTTTCGTCTCAATGCCGATGCCATGTCCCAGACA
1 GATGCCATGTCCTAGACATGTCTTACACTAGCTTACATATCAATGTCGATGCCATGTCCCAGACA
* * *
79292261 TGGTCTTACACTGGCTCTCATAAT-GTGGCC
66 TGGTCTTACACTGACTATCA-AATCGAGGCC
79292291 GATG-CATGTCCTAGACATGTCTTACACT
1 GATGCCATGTCCTAGACATGTCTTACACT
79292319 GGCACACAAA
Statistics
Matches: 182, Mismatches: 25, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
92 39 0.21
93 2 0.01
94 44 0.24
95 12 0.07
96 39 0.21
97 2 0.01
98 5 0.03
99 36 0.20
100 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (95 bp):
GATGCCATGTCCTAGACATGTCTTACACTAGCTTACATATCAATGTCGATGCCATGTCCCAGACA
TGGTCTTACACTGACTATCAAATCGAGGCC
Found at i:79294281 original size:42 final size:42
Alignment explanation
Indices: 79294169--79294323 Score: 204
Period size: 42 Copynumber: 3.7 Consensus size: 42
79294159 TACCACACCA
* * **
79294169 ATGCCATATCCAAGATTTGGTCTTACATGGGATCTCATATCG
1 ATGCCATATCCAAGATATGGTCTTACACGAAATCTCATATCG
* * *
79294211 ATGCCTATAGCCAAGCTATGGTCTTACACGAAATATCATATCG
1 ATGCC-ATATCCAAGATATGGTCTTACACGAAATCTCATATCG
*
79294254 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAAT-G
1 ATGCCATATCCAAGATATGGTCTTACACGAAATCTCAT-ATCG
*
79294296 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCAAGATATGGTCTTACAC
79294324 ATAGTCTCTA
Statistics
Matches: 100, Mismatches: 11, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
42 63 0.63
43 37 0.37
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCAAGATATGGTCTTACACGAAATCTCATATCG
Found at i:79294299 original size:85 final size:84
Alignment explanation
Indices: 79294169--79294323 Score: 213
Period size: 85 Copynumber: 1.8 Consensus size: 84
79294159 TACCACACCA
* * ** *
79294169 ATGCCATATCCAAGATTTGGTCTTACATGGGATCTCATATCGATGCCTATAGCCAAGCTATGGTC
1 ATGCCATATCCAAGATATGGTCTTACACGAAATCTCATATCGATGCC-ATAGCCAAGATATGGTC
79294234 TTACACGAAATATCATATCG
65 TTACACGAAATATCATATCG
* * *
79294254 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATAAT-GATGCCATATCCCAGATATGGTC
1 ATGCCATATCCAAGATATGGTCTTACACGAAATCTCAT-ATCGATGCCATAGCCAAGATATGGTC
79294318 TTACAC
65 TTACAC
79294324 ATAGTCTCTA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
84 20 0.33
85 39 0.64
86 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (84 bp):
ATGCCATATCCAAGATATGGTCTTACACGAAATCTCATATCGATGCCATAGCCAAGATATGGTCT
TACACGAAATATCATATCG
Found at i:79300755 original size:18 final size:18
Alignment explanation
Indices: 79300723--79300761 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
79300713 ATTTATTCAA
79300723 TTTAACAAAATTTACACAT
1 TTTAACAAAATTTACA-AT
*
79300742 TTTATCAAAA-TTACAAT
1 TTTAACAAAATTTACAAT
79300759 TTT
1 TTT
79300762 CCCCTATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 5 0.26
19 9 0.47
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.44
Consensus pattern (18 bp):
TTTAACAAAATTTACAAT
Found at i:79305607 original size:64 final size:64
Alignment explanation
Indices: 79305506--79305637 Score: 248
Period size: 64 Copynumber: 2.1 Consensus size: 64
79305496 ACATGGTTGT
*
79305506 ATTTTGATGTTTAATGGAGGAATATGAATGTTTGATGTGTGATAAACATCTTTTACTAAGTAAG
1 ATTTTGATGTTTAATGGAGGAATATGAATGTTTGATGTGTGATAAACATCTTTTACAAAGTAAG
79305570 ATTTTGATGTTTAATGGAGGAATATGAATGTTTGATGTGTGATAAACATCTTTTACAAAGTAAG
1 ATTTTGATGTTTAATGGAGGAATATGAATGTTTGATGTGTGATAAACATCTTTTACAAAGTAAG
79305634 -TTTT
1 ATTTT
79305638 AGTGAAAATA
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
63 4 0.06
64 63 0.94
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.42
Consensus pattern (64 bp):
ATTTTGATGTTTAATGGAGGAATATGAATGTTTGATGTGTGATAAACATCTTTTACAAAGTAAG
Found at i:79308135 original size:40 final size:41
Alignment explanation
Indices: 79307958--79308135 Score: 208
Period size: 40 Copynumber: 4.5 Consensus size: 41
79307948 AAACCAAGTA
* * *
79307958 CCTTCGGGATTTAG-CCGG-ATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAATATAG-TAACTAGCACAAATG
*
79307997 CCTTCGGGACTTAGCCC-GATTATAGTAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGAATATAGTAACT-AGCACAAATG
** *
79308037 CCTTCGGGACCAAGCCCGG-ATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTAGCACAAATG
*
79308077 CCTTCGGGACTTAGCCCGGAAT-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATATAGTAACTAGCACAAATG
*
79308117 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
79308136 TTATCATCCG
Statistics
Matches: 119, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
39 15 0.13
40 101 0.85
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGAATATAGTAACTAGCACAAATG
Found at i:79314617 original size:42 final size:40
Alignment explanation
Indices: 79314531--79314694 Score: 148
Period size: 42 Copynumber: 3.9 Consensus size: 40
79314521 TTAGGGTTAC
* * *
79314531 TGAGATTATGTGTAAGACCATATCTGGGATATGACATCAGTA
1 TGAGATT-CGTGTAAGACCATATCTGGGATATGGCATGA-TA
*
79314573 TGAGACTTCGTATAAGACCATATCTGGGATATGGCAATGATA
1 TGAGA-TTCGTGTAAGACCATATCTGGGATATGGC-ATGATA
* * * *
79314615 TGAGATTTTGTGTATGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGA-TTCGTGTAAGACCATATCTGGGATA-TGGCAT-GATA
** * *
79314658 CAAGATTACATGTAAGACCATATCTGGGACATGGCAT
1 TGAGATT-CGTGTAAGACCATATCTGGGATATGGCAT
79314695 TGGTATAGTC
Statistics
Matches: 99, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
42 66 0.67
43 33 0.33
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (40 bp):
TGAGATTCGTGTAAGACCATATCTGGGATATGGCATGATA
Found at i:79314765 original size:12 final size:12
Alignment explanation
Indices: 79314748--79314782 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
79314738 TTCCAAGTGG
79314748 TTCAACGGGTAA
1 TTCAACGGGTAA
*
79314760 TTCAACGGATAA
1 TTCAACGGGTAA
*
79314772 TTGAACGGGTA
1 TTCAACGGGTA
79314783 TGTCAAAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (12 bp):
TTCAACGGGTAA
Found at i:79316596 original size:13 final size:13
Alignment explanation
Indices: 79316578--79316607 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
79316568 TCACTTGGAC
79316578 ATATGGCTTAGAA
1 ATATGGCTTAGAA
79316591 ATATGGCTTAGAA
1 ATATGGCTTAGAA
79316604 ATAT
1 ATAT
79316608 TGGACCACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (13 bp):
ATATGGCTTAGAA
Found at i:79318072 original size:15 final size:15
Alignment explanation
Indices: 79318040--79318068 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
79318030 ATTTTTTGTG
79318040 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
79318055 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
79318069 ATTTTTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:79319223 original size:45 final size:45
Alignment explanation
Indices: 79319159--79319271 Score: 154
Period size: 45 Copynumber: 2.5 Consensus size: 45
79319149 CAGGATTTTG
* * * *
79319159 ATATGCGTTTTCGTGTAAGACCGCATTTGGGACGTTGGCATCTAT
1 ATATGTGTTTTCGTGTAAGACCACATCTGGGACGTTGGCATCAAT
*
79319204 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAAT
1 ATATGTGTTTTCGTGTAAGACCACATCTGGGACGTTGGCATCAAT
* * *
79319249 ATATGTATTTTTGTGTAAAACCA
1 ATATGTGTTTTCGTGTAAGACCA
79319272 TGTTTGGTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 60 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACATCTGGGACGTTGGCATCAAT
Found at i:79319287 original size:45 final size:45
Alignment explanation
Indices: 79319166--79319299 Score: 151
Period size: 45 Copynumber: 3.0 Consensus size: 45
79319156 TTGATATGCG
* * * * *
79319166 TTTTCGTGTAAGACCGCATTTGGGACGTTGGCATCTATATATGTG
1 TTTTCGTGTAAAACCACGTTTGGGACGTTGGCATCAATATATGTA
* *
79319211 TTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAATATATGTA
1 TTTTCGTGTAAAACCACGTTTGGGACGTTGGCATCAATATATGTA
* * * * * *
79319256 TTTTTGTGTAAAACCATGTTTGGTACATTGGCATCGATCTATGT
1 TTTTCGTGTAAAACCACGTTTGGGACGTTGGCATCAATATATGT
79319300 GGTTATGTGT
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 76 1.00
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.38
Consensus pattern (45 bp):
TTTTCGTGTAAAACCACGTTTGGGACGTTGGCATCAATATATGTA
Found at i:79319309 original size:45 final size:44
Alignment explanation
Indices: 79319159--79319311 Score: 144
Period size: 45 Copynumber: 3.4 Consensus size: 44
79319149 CAGGATTTTG
* * * * *
79319159 ATATGCGTTTTCGTGTAAGACCGCATTTGGGACGTTGGCATCTAT
1 ATATGTGTTTT-GTGTAAAACCACGTTTGGGACGTTGGCATCAAT
* *
79319204 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAAT
1 ATATGTGTTTT-GTGTAAAACCACGTTTGGGACGTTGGCATCAAT
* * * * *
79319249 ATATGTATTTTTGTGTAAAACCATGTTTGGTACATTGGCATCGAT
1 ATATGT-GTTTTGTGTAAAACCACGTTTGGGACGTTGGCATCAAT
* *
79319294 CTATGTGGTTATGTGTAA
1 ATATGT-GTTTTGTGTAA
79319312 GACGATGTCT
Statistics
Matches: 91, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
45 87 0.96
46 4 0.04
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.38
Consensus pattern (44 bp):
ATATGTGTTTTGTGTAAAACCACGTTTGGGACGTTGGCATCAAT
Found at i:79327050 original size:45 final size:45
Alignment explanation
Indices: 79326997--79327230 Score: 306
Period size: 45 Copynumber: 5.2 Consensus size: 45
79326987 ATGTGAGTTT
* *
79326997 GTGTAAGACCATGTCTGGGACGTTGACATCGATATATGTGTTTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTTTTC
* * *
79327042 GTGCAAGACCACGTCTGGGACGTTGGCATTGATATATGTATTTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTTTTC
* *
79327087 GTGTAAGACCACGTCTGGGACGTTGGCATCGATAAATATGTTTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTTTTC
* * * * *
79327132 GTGTAAGACCACATCTAGGACGTTGGCATCAATATATTTGTTTTT
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTTTTC
* * * * **
79327177 GTGTAAGACCACATCTGGGACGTTGGTATCGATCTATGTGGTAAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTTTTC
79327222 GTGTAAGAC
1 GTGTAAGAC
79327231 TGGGACATCA
Statistics
Matches: 164, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 164 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (45 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTGTTTTC
Found at i:79330065 original size:27 final size:26
Alignment explanation
Indices: 79330027--79330078 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
79330017 CTCGCTGCAA
*
79330027 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
79330054 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
79330079 GTAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:79333044 original size:39 final size:40
Alignment explanation
Indices: 79332840--79333062 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
79332830 TTGAATGCTG
* * * * * *
79332840 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
79332880 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
79332920 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
79332960 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
79333000 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
79333039 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
79333063 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:79333082 original size:79 final size:80
Alignment explanation
Indices: 79332915--79333097 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
79332905 GTGCGAGATA
* * *
79332915 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
79332980 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
79332995 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
79333059 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
79333074 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
79333098 TACATGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:79335642 original size:19 final size:19
Alignment explanation
Indices: 79335614--79335651 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
79335604 CTTAGAATTT
*
79335614 TTTTTTTCAAAACAGGGGA
1 TTTTTCTCAAAACAGGGGA
*
79335633 TTTTTCTCAAAAGAGGGGA
1 TTTTTCTCAAAACAGGGGA
79335652 CACACTCTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.34
Consensus pattern (19 bp):
TTTTTCTCAAAACAGGGGA
Found at i:79337615 original size:21 final size:20
Alignment explanation
Indices: 79337585--79337623 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
79337575 TAAAACTTGT
79337585 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
79337605 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
79337624 CAAAACAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:79337707 original size:10 final size:10
Alignment explanation
Indices: 79337692--79337717 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
79337682 TAGTCCCTGG
79337692 CTAGCTGGAC
1 CTAGCTGGAC
79337702 CTAGCTGGAC
1 CTAGCTGGAC
79337712 CTAGCT
1 CTAGCT
79337718 TTCAAAGTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.31, G:0.27, T:0.23
Consensus pattern (10 bp):
CTAGCTGGAC
Found at i:79342407 original size:27 final size:27
Alignment explanation
Indices: 79342357--79342501 Score: 182
Period size: 27 Copynumber: 5.4 Consensus size: 27
79342347 AGGGCAAAAT
* * * * *
79342357 GGTAATTTTACCCCACAAGAGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
79342384 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
79342411 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
79342438 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
79342465 AATAATTCTACCCTACATGGGTATTTA
1 GGTAATTCTACCCTACAGGGGTATTTC
79342492 GGTAATTCTA
1 GGTAATTCTA
79342502 TAACTTATCC
Statistics
Matches: 101, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:79344740 original size:51 final size:50
Alignment explanation
Indices: 79344663--79344763 Score: 141
Period size: 51 Copynumber: 2.0 Consensus size: 50
79344653 TATCTGTTTT
*
79344663 CCTGCTAATATGATGCTTTTACCTTTCGATGAATTTG-TCATAATTCTGGG
1 CCTGCTAATATGATGCTCTTACCTTTCGATGAATTTGAT-ATAATTCTGGG
* * *
79344713 NCCTGCTGATCTGATGCTCTTATCTTTCGATGAATTTGATATAATTCTGGG
1 -CCTGCTAATATGATGCTCTTACCTTTCGATGAATTTGATATAATTCTGGG
79344764 AATGGATTGG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 44 0.98
52 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (50 bp):
CCTGCTAATATGATGCTCTTACCTTTCGATGAATTTGATATAATTCTGGG
Found at i:79349148 original size:42 final size:43
Alignment explanation
Indices: 79349094--79349204 Score: 104
Period size: 43 Copynumber: 2.6 Consensus size: 43
79349084 GATTTATGTA
* * * *
79349094 TAAGACCATGTCTGAGACATTGGCATC-GTATCTG-ATTTCTTG
1 TAAGACCCTGTCTGAGACATTGGCATCAATAT-TGAATTACATG
**
79349136 TAAGACCCTGTCT-AGGACAGAGGCATCAATATTGAATTACATG
1 TAAGACCCTGTCTGA-GACATTGGCATCAATATTGAATTACATG
*
79349179 TAAGACCAC-GTCTGAGACGTTGGCAT
1 TAAGACC-CTGTCTGAGACATTGGCAT
79349205 TGTACTTGTT
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
41 1 0.02
42 24 0.44
43 28 0.51
44 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (43 bp):
TAAGACCCTGTCTGAGACATTGGCATCAATATTGAATTACATG
Found at i:79356432 original size:4 final size:4
Alignment explanation
Indices: 79356423--79356472 Score: 82
Period size: 4 Copynumber: 12.5 Consensus size: 4
79356413 ATCGCTATAA
* *
79356423 ATGT ATGT ATGT ATGC ATGT ATGC ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
79356471 AT
1 AT
79356473 TATTATTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.26, C:0.04, G:0.24, T:0.46
Consensus pattern (4 bp):
ATGT
Found at i:79368729 original size:21 final size:21
Alignment explanation
Indices: 79368705--79368770 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 21
79368695 TTTAATAAAA
*
79368705 TTCATATTCAATTGAATCAAT
1 TTCATATTCAATTCAATCAAT
* * * * *
79368726 TTCACATT-TATTTAATAAAA
1 TTCATATTCAATTCAATCAAT
79368746 TTCATATTCAATTCAATCAAT
1 TTCATATTCAATTCAATCAAT
79368767 TTCA
1 TTCA
79368771 CATTTTAGGC
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
20 15 0.44
21 19 0.56
ACGTcount: A:0.39, C:0.15, G:0.02, T:0.44
Consensus pattern (21 bp):
TTCATATTCAATTCAATCAAT
Found at i:79368739 original size:41 final size:41
Alignment explanation
Indices: 79368694--79368775 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
79368684 ATTTAACTTA
*
79368694 ATTTAATAAAATTCATATTCAATTGAATCAATTTCACATTT
1 ATTTAATAAAATTCATATTCAATTCAATCAATTTCACATTT
79368735 ATTTAATAAAATTCATATTCAATTCAATCAATTTCACATTT
1 ATTTAATAAAATTCATATTCAATTCAATCAATTTCACATTT
79368776 TAGGCAAAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.41, C:0.13, G:0.01, T:0.44
Consensus pattern (41 bp):
ATTTAATAAAATTCATATTCAATTCAATCAATTTCACATTT
Found at i:79368767 original size:20 final size:20
Alignment explanation
Indices: 79368703--79368767 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
79368693 AATTTAATAA
*
79368703 AATTCATATTCAATTGAATC
1 AATTCATATTCAATTCAATC
* * * *
79368723 AATTTCACATT-TATTTAATAA
1 AA-TTCATATTCAATTCAAT-C
79368744 AATTCATATTCAATTCAATC
1 AATTCATATTCAATTCAATC
79368764 AATT
1 AATT
79368768 TCACATTTTA
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
20 19 0.56
21 15 0.44
ACGTcount: A:0.42, C:0.14, G:0.02, T:0.43
Consensus pattern (20 bp):
AATTCATATTCAATTCAATC
Found at i:79374713 original size:17 final size:18
Alignment explanation
Indices: 79374686--79374719 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
79374676 AATTAAATAT
79374686 ATGCATATTAATTTATTA
1 ATGCATATTAATTTATTA
79374704 ATGC-TATTAATTTATT
1 ATGCATATTAATTTATT
79374720 CAAACAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (18 bp):
ATGCATATTAATTTATTA
Found at i:79379751 original size:19 final size:20
Alignment explanation
Indices: 79379707--79379751 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
79379697 ACCATGGTCA
79379707 TATTTTTAACATGATTTAAT
1 TATTTTTAACATGATTTAAT
79379727 TA-TTTTATA-ATG-TTTAAT
1 TATTTTTA-ACATGATTTAAT
79379745 TATTTTT
1 TATTTTT
79379752 CGACAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 8 0.35
19 12 0.52
20 3 0.13
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (20 bp):
TATTTTTAACATGATTTAAT
Found at i:79407210 original size:148 final size:148
Alignment explanation
Indices: 79406936--79407230 Score: 527
Period size: 148 Copynumber: 2.0 Consensus size: 148
79406926 TATCTCAAGG
79406936 CTCTATCCCTATCATCAGCAATAAGGATAGGATTTTGAGCAAGGTTTGCTCCATTTCCTTGACTC
1 CTCTATCCCTATCATCAGCAATAAGGATAGGATTTTGAGCAAGGTTTGCTCCATTTCCTTGACTC
* * *
79407001 ATATTCTCGAAATTCATTCCTTCAGTCATTCTCTGGTTCGCTTGTCTTCTTATCTGTCGAAAGGT
66 ATATTCTCAAAATTCATTCCTTCAGTCATTCTCTGGTTCGCTTGTCTTCTTAGCTGCCGAAAGGT
79407066 TCATTCTATCTCAGGGTT
131 TCATTCTATCTCAGGGTT
79407084 CTCTATCCCTATCATCAGCAATAAGGATAGGATTTTGAGCAAGGTTTGCTCCATTTCCTTGACTC
1 CTCTATCCCTATCATCAGCAATAAGGATAGGATTTTGAGCAAGGTTTGCTCCATTTCCTTGACTC
* * *
79407149 ATATTCTTAAAATTCATTCCTTCAGTCTTTCTCTGGTTCGCTTGTCTTCTTCGCTGCCGAAAGGT
66 ATATTCTCAAAATTCATTCCTTCAGTCATTCTCTGGTTCGCTTGTCTTCTTAGCTGCCGAAAGGT
*
79407214 TCGTTCTATCTCAGGGT
131 TCATTCTATCTCAGGGT
79407231 CTTCAAGGAG
Statistics
Matches: 140, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
148 140 1.00
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (148 bp):
CTCTATCCCTATCATCAGCAATAAGGATAGGATTTTGAGCAAGGTTTGCTCCATTTCCTTGACTC
ATATTCTCAAAATTCATTCCTTCAGTCATTCTCTGGTTCGCTTGTCTTCTTAGCTGCCGAAAGGT
TCATTCTATCTCAGGGTT
Found at i:79414512 original size:24 final size:24
Alignment explanation
Indices: 79414485--79414543 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
79414475 CCTATTTATG
*
79414485 TAAGGGTTTGCATACTAGATCACA
1 TAAGGGTTTGCATACTAAATCACA
*
79414509 TAAGGGTTCGCATACTAAATCACA
1 TAAGGGTTTGCATACTAAATCACA
*
79414533 TAAGGTTTTGC
1 TAAGGGTTTGC
79414544 TTAAAGGTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (24 bp):
TAAGGGTTTGCATACTAAATCACA
Found at i:79414604 original size:130 final size:129
Alignment explanation
Indices: 79414365--79414622 Score: 318
Period size: 130 Copynumber: 2.0 Consensus size: 129
79414355 TACAATGTTC
* * * *
79414365 GCATACTAGATCACAGAAGGCTTTGCGTACTAAATTACATAAGGTTTACATGAAGGTTCACATAT
1 GCATACTAGATCACAGAAGGCTTCGCATACTAAATCACATAAGGTTTACATAAAGGTTCACATAT
* * * *
79414430 CAGCTACAGTTCATCTATCAATTTATAGCAGAGTTCGTATGTATACCTATTTATGTAAGGGTTT
66 CAGCTACAATTCACCTATCAATTTATAACAGAGTTCGTATGTATACATATTTATGTAAGGGTTT
* * * * **
79414494 GCATACTAGATCACATAAGGGTTCGCATACTAAATCACATAAGGTTTTGCTTAAAGGTTCGTATA
1 GCATACTAGATCACAGAAGGCTTCGCATACTAAATCACATAAGG-TTTACATAAAGGTTCACATA
* * * * ** *
79414559 TCGGCTACAATTCACCTATTAATTTATAATAGATTTTTTATGTATACATGTTTATGTAAGGGTT
65 TCAGCTACAATTCACCTATCAATTTATAACAGAGTTCGTATGTATACATATTTATGTAAGGGTT
79414623 CTGATGAAAT
Statistics
Matches: 107, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
129 39 0.36
130 68 0.64
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (129 bp):
GCATACTAGATCACAGAAGGCTTCGCATACTAAATCACATAAGGTTTACATAAAGGTTCACATAT
CAGCTACAATTCACCTATCAATTTATAACAGAGTTCGTATGTATACATATTTATGTAAGGGTTT
Found at i:79420593 original size:9 final size:8
Alignment explanation
Indices: 79420579--79420612 Score: 50
Period size: 9 Copynumber: 4.0 Consensus size: 8
79420569 TTAGCTTATA
79420579 ATTCATTC
1 ATTCATTC
79420587 TATTCATTC
1 -ATTCATTC
79420596 ATTCTATTC
1 ATTC-ATTC
79420605 ATTCATTC
1 ATTCATTC
79420613 TATTTTGAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.53
Consensus pattern (8 bp):
ATTCATTC
Found at i:79420595 original size:4 final size:4
Alignment explanation
Indices: 79420579--79420612 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
79420569 TTAGCTTATA
79420579 ATTC ATTC TATTC ATTC ATTC TATTC ATTC ATTC
1 ATTC ATTC -ATTC ATTC ATTC -ATTC ATTC ATTC
79420613 TATTTTGAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.53
Consensus pattern (4 bp):
ATTC
Found at i:79420597 original size:13 final size:13
Alignment explanation
Indices: 79420579--79420616 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
79420569 TTAGCTTATA
79420579 ATTCATTCTATTC
1 ATTCATTCTATTC
79420592 ATTCATTCTATTC
1 ATTCATTCTATTC
79420605 ATTCATTCTATT
1 ATTCATTCTATT
79420617 TTGAGGTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.24, C:0.21, G:0.00, T:0.55
Consensus pattern (13 bp):
ATTCATTCTATTC
Found at i:79422865 original size:47 final size:45
Alignment explanation
Indices: 79422794--79423248 Score: 357
Period size: 47 Copynumber: 9.7 Consensus size: 45
79422784 TGATTTGTGC
*
79422794 GCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGAGA
* *
79422840 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCCAGACGA-A
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CATATGAGA
* *
79422887 GGCTAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGA
1 -GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGAGA
* *
79422934 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCCAGACGA-A
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CATATGAGA
* * * *
79422981 GGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATAAGA
1 -GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGAGA
* * * *
79423028 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACATATGAGA
* * * * *
79423076 GCTAGAGTAAGACATGTCTAGGACATGCATCAGCCTCGATA-GAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATATGAG--A
* * * * * *
79423123 GCCAGTGTAAGACGTGTCTGGGACATGCATCGACTA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATATG-AGA
* * *
79423167 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G-GC-CACATATGAGA
* *
79423215 GCCAATGTAAGACCATGTTTGGGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
79423249 ACAATTTACC
Statistics
Matches: 326, Mismatches: 53, Indels: 57
0.75 0.12 0.13
Matches are distributed among these distances:
44 29 0.09
45 11 0.03
46 63 0.19
47 122 0.37
48 74 0.23
49 22 0.07
50 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATATGAGA
Found at i:79422958 original size:94 final size:93
Alignment explanation
Indices: 79422797--79423248 Score: 587
Period size: 94 Copynumber: 4.8 Consensus size: 93
79422787 TTTGTGCGCC
* *
79422797 AGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
79422862 GACATGGCATCGGCATCCAGACGAAG-GCT
66 GACATGGCATCGGCAT-CAGA-GAAGTGCT
* *
79422891 AGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
79422956 GACATGGCATCGGCATCCAGACGAAG-GCT
66 GACATGGCATCGGCAT-CAGA-GAAGTGCT
* * *
79422985 AGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATAAGAGCCAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
79423050 GACATGGCATCGGCA-CAGAGATGAGTGCT
66 GACATGGCATCGGCATCAGAGA--AGTGCT
* * * *
79423079 AGAGTAAGACATGTCTAGGACATGCATCAGCCTCGA-TA-GAGATAGCCAGTGTAAGA-CGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAG--AGCCAGTGTAAGACCATGTC
* * **
79423141 TGGGACAT-GCATCGAC-TAAGAGTTGTGCT
63 TGGGACATGGCATCGGCATCAGAGAAGTGCT
* * *
79423170 AGTGTAAGACATGTCTGGGACATGCATCAGCACGCATATATGAGAGCCAATGTAAGACCATGTTT
1 AGTGTAAGACATGTCTGGGACATGCATCAGC-CACAT-TATGAGAGCCAGTGTAAGACCATGTCT
79423235 GGGACATGGCATCG
64 GGGACATGGCATCG
79423249 ACAATTTACC
Statistics
Matches: 323, Mismatches: 22, Indels: 26
0.87 0.06 0.07
Matches are distributed among these distances:
91 37 0.11
92 18 0.06
93 29 0.09
94 225 0.70
95 14 0.04
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATCAGAGAAGTGCT
Found at i:79423051 original size:141 final size:138
Alignment explanation
Indices: 79422794--79423248 Score: 401
Period size: 141 Copynumber: 3.2 Consensus size: 138
79422784 TGATTTGTGC
* * *
79422794 GCCAGTGTAAGA-CATGTCTGGGACAT-GCTTCGGC--CACATTATGAGAGCCAGTGTAAGACCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCACA-GA-GATAGCCAGTGTAAGA-CA
* * * * *
79422855 TGTCTGGGACATGGCATCGGCATCCAGACGAAG-GCTAGTGTAAGACATGTCTGGGACATGCTTC
63 TGTCTGGGACAT-GCATCGAC-T-AAGA-GTAGAGCCAGTGTAAGACATGTCTGGGACATGCATC
79422919 GGCCACATTATGAGA
124 GGCCACATTATGAGA
*
79422934 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC-CAGACGA-AGGCTAGTGTAAGACAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCACAGA-GATA-GCCAGTGTAAGACAT
* ** *
79422997 GTCTGGGACATGCATCAGCCATATTA-TAAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
64 GTCTGGGACATGCATC-GAC-TAAGAGT-AGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
** *
79423061 GG-CACAGAGATGAGT
124 GGCCACA-TTATGAGA
* * * * * * *
79423076 GCTAGAGTAAGA-CATGTCTAGGACAT-GCATCAGCCTCGATAGAGATAGCCAGTGTAAGACGTG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC-ACAGAGATAGCCAGTGTAAGACATG
* * * * *
79423139 TCTGGGACATGCATCGACTAAGAGTTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACG
65 TCTGGGACATGCATCGACTAAGAGTAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CA
79423204 CATATATGAGA
129 CAT-TATGAGA
* *
79423215 GCCAATGTAAGACCATGTTTGGGACATGGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
79423249 ACAATTTACC
Statistics
Matches: 254, Mismatches: 41, Indels: 39
0.76 0.12 0.12
Matches are distributed among these distances:
137 6 0.02
138 13 0.05
139 34 0.13
140 53 0.21
141 99 0.39
142 46 0.18
143 2 0.01
144 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (138 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCACAGAGATAGCCAGTGTAAGACATGT
CTGGGACATGCATCGACTAAGAGTAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA
TTATGAGA
Found at i:79426056 original size:47 final size:47
Alignment explanation
Indices: 79425992--79426253 Score: 270
Period size: 47 Copynumber: 5.6 Consensus size: 47
79425982 ATCCATAAGT
*
79425992 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * * ***
79426039 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAAGT-
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATCTCTC
*
79426085 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * * ***
79426132 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAAGT-
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATCTCTC
*
79426178 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
*
79426225 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
79426254 CATTCGCATC
Statistics
Matches: 171, Mismatches: 30, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
43 2 0.01
44 8 0.05
46 62 0.36
47 89 0.52
49 8 0.05
50 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:79426059 original size:93 final size:93
Alignment explanation
Indices: 79425946--79426302 Score: 653
Period size: 93 Copynumber: 3.8 Consensus size: 93
79425936 GCCCATAGGT
* * *
79425946 GAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
79426010 ATGAGCTCGGATGCCTAGTTACATCTCTC
65 ATGAGCTCGGATGCCTAGTTACATCTCTC
79426039 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79426104 TGAGCTCGGATGCCTAGTTACATCTCTC
66 TGAGCTCGGATGCCTAGTTACATCTCTC
79426132 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79426197 TGAGCTCGGATGCCTAGTTACATCTCTC
66 TGAGCTCGGATGCCTAGTTACATCTCTC
79426225 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
79426290 CGAGTTCGGATGC
66 TGAGCTCGGATGC
79426303 TCAACCATTG
Statistics
Matches: 258, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
92 2 0.01
93 256 0.99
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
TGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:79426299 original size:46 final size:45
Alignment explanation
Indices: 79425938--79426298 Score: 311
Period size: 46 Copynumber: 7.8 Consensus size: 45
79425928 TGTAACCCGC
* * *
79425938 CCATAGGTGAACTCAGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
79425984 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
79426030 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
* *
79426077 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
79426123 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
* *
79426170 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
79426216 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
79426263 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
79426299 ATGCTCAACC
Statistics
Matches: 250, Mismatches: 44, Indels: 42
0.74 0.13 0.12
Matches are distributed among these distances:
43 3 0.01
44 11 0.04
45 2 0.01
46 126 0.50
47 93 0.37
49 12 0.05
50 3 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:79427839 original size:48 final size:47
Alignment explanation
Indices: 79427729--79427997 Score: 371
Period size: 48 Copynumber: 5.6 Consensus size: 47
79427719 ATGAGATTCC
* * * *
79427729 GTGTAAGACCATGTCTGGAACATGGCATCG-GTATCTGAGATATGTACCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGCG-A--TGATATATGTGCCA
* *
79427778 GTGTACGACCATGTCTGGGACATGGCATCGACGATAATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCG-CGATGATATATGTGCCA
*
79427826 GTGTAAGACCATGTCTGGGACATGGAATCG-GTAATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGCG--ATGATATATGTGCCA
79427874 GTGTAAGACCATGTCTGGGACATGGCATCTGCGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATC-GCGATGATATATGTGCCA
*
79427922 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATC-GCGATGATATATGTGCCA
*
79427970 GTGTAAGACCATGTCGGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
79427998 TGGTACTTTA
Statistics
Matches: 201, Mismatches: 13, Indels: 13
0.89 0.06 0.06
Matches are distributed among these distances:
46 1 0.00
48 168 0.84
49 29 0.14
50 2 0.01
51 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGCGATGATATATGTGCCA
Found at i:79427899 original size:96 final size:96
Alignment explanation
Indices: 79427729--79427997 Score: 423
Period size: 96 Copynumber: 2.8 Consensus size: 96
79427719 ATGAGATTCC
* * * * * *
79427729 GTGTAAGACCATGTCTGGAACATGGCATCGGTATCTGAGATATGTACCTGTGTACGACCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTA-ATGATATATGTGCCAGTGTAAGACCATGTCT
79427794 GGGACATGGCATC-GACGATAATATATGTGCCA
65 GGGACATGGCATCTG-CGATAATATATGTGCCA
*
79427826 GTGTAAGACCATGTCTGGGACATGGAATCGGTAATGATATATGTGCCAGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTAATGATATATGTGCCAGTGTAAGACCATGTCTG
*
79427891 GGACATGGCATCTGCGATGATATATGTGCCA
66 GGACATGGCATCTGCGATAATATATGTGCCA
* *
79427922 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCAGTGTAAGACCATGTCGG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTAATGATATATGTGCCAGTGTAAGACCATGTCTG
79427987 GGACATGGCAT
66 GGACATGGCAT
79427998 TGGTACTTTA
Statistics
Matches: 160, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
96 128 0.80
97 32 0.20
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGTAATGATATATGTGCCAGTGTAAGACCATGTCTG
GGACATGGCATCTGCGATAATATATGTGCCA
Found at i:79427990 original size:144 final size:144
Alignment explanation
Indices: 79427729--79427994 Score: 410
Period size: 144 Copynumber: 1.8 Consensus size: 144
79427719 ATGAGATTCC
* *
79427729 GTGTAAGACCATGTCTGGAACATGGCATCGGTATCTGAGATATGTACCTGTGTACGACCATGTCT
1 GTGTAAGACCATGTCTGGAACATGGCATCGGTA-CTGAGATATGTACCAGTGTAAGACCATGTCT
*
79427794 GGGACATGGCATCGACGATAATATATGTGCCAGTGTAAGACCATGTCTGGGACATGGAATCGGTA
65 GGGACATGGCATCGACGATAATATATGTGCCAGTGTAAGACCATGTCGGGGACATGGAATCGGTA
79427859 ATGATATATGTGCCA
130 ATGATATATGTGCCA
* * *
79427874 GTGTAAGACCATGTCTGGGACATGGCATCTGCG-A-TGATATATGTGCCAGTGTAAGACCATGTC
1 GTGTAAGACCATGTCTGGAACATGGCATC-G-GTACTGAGATATGTACCAGTGTAAGACCATGTC
** *
79427937 TGGGACATGGCATCGGTGATGATATATGTGCCAGTGTAAGACCATGTCGGGGACATGG
64 TGGGACATGGCATCGACGATAATATATGTGCCAGTGTAAGACCATGTCGGGGACATGG
79427995 CATTGGTACT
Statistics
Matches: 110, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
144 79 0.72
145 28 0.25
146 2 0.02
147 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (144 bp):
GTGTAAGACCATGTCTGGAACATGGCATCGGTACTGAGATATGTACCAGTGTAAGACCATGTCTG
GGACATGGCATCGACGATAATATATGTGCCAGTGTAAGACCATGTCGGGGACATGGAATCGGTAA
TGATATATGTGCCA
Found at i:79429333 original size:27 final size:26
Alignment explanation
Indices: 79429284--79429344 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
79429274 AGCGAGGCTG
*
79429284 ACAGATATTGTGACGAAGTCACCAAA
1 ACAGATATTGTGACGAAGCCACCAAA
* * * *
79429310 TACAGATATTGTGGCTAGGCCACCAGA
1 -ACAGATATTGTGACGAAGCCACCAAA
79429337 ACAGATAT
1 ACAGATAT
79429345 ATATATGTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (26 bp):
ACAGATATTGTGACGAAGCCACCAAA
Found at i:79430061 original size:26 final size:27
Alignment explanation
Indices: 79430032--79430085 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
79430022 TCACACAAGT
*
79430032 TAGTCATTTATGCA-CG-AGGGGCAAAA
1 TAGTCATTTA-ACACCGTAGGGGCAAAA
79430058 TAGTCATTTAACACCGTAGGGGCAAAA
1 TAGTCATTTAACACCGTAGGGGCAAAA
79430085 T
1 T
79430086 GGTAATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 2 0.08
26 12 0.48
27 11 0.44
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (27 bp):
TAGTCATTTAACACCGTAGGGGCAAAA
Found at i:79430116 original size:27 final size:27
Alignment explanation
Indices: 79430086--79430285 Score: 256
Period size: 27 Copynumber: 7.4 Consensus size: 27
79430076 GGGGCAAAAT
* * * *
79430086 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
79430113 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
79430140 GACATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
79430167 GGCAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
79430194 GGTAATTCTACCCTCCAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
79430221 AATAATTCAACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
79430248 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
79430275 GGTAATTCTAC
1 GGTAATTCTAC
79430286 AACTTATCCA
Statistics
Matches: 150, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 150 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:79432790 original size:40 final size:41
Alignment explanation
Indices: 79432653--79432836 Score: 173
Period size: 40 Copynumber: 4.6 Consensus size: 41
79432643 ACTTGAAATC
* * *
79432653 TCGCACACTAAGTGCCAATACATAGACGAAGCTATTAT--AA
1 TCGCACACTAAGTGCC-ATATATAGCCGAAGCTATTCTCGAA
* * * *
79432693 TTTCGTACACTAAGTGCCTTACATAGCTGAAGCTA-TCTCG-A
1 --TCGCACACTAAGTGCCATATATAGCCGAAGCTATTCTCGAA
* * *
79432734 TCTCACACAAAGTGTCATATATAGCCGAAGCTATTC-CGAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATTCTCGAA
* * *
79432774 TCGCACACTAAGTGTCATATATAGCCGAAACT-TTCTTGAA
1 TCGCACACTAAGTGCCATATATAGCCGAAGCTATTCTCGAA
*
79432814 TCGTACACTAAGTGCCATATATA
1 TCGCACACTAAGTGCCATATATA
79432837 TATCCAAATT
Statistics
Matches: 119, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 31 0.26
40 58 0.49
41 15 0.13
42 15 0.13
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (41 bp):
TCGCACACTAAGTGCCATATATAGCCGAAGCTATTCTCGAA
Found at i:79434607 original size:150 final size:150
Alignment explanation
Indices: 79434336--79434635 Score: 600
Period size: 150 Copynumber: 2.0 Consensus size: 150
79434326 CTCGTATGCA
79434336 TCACATAACTACCTTATGATTTAGTGCAAATCAAGCTCACATATAAACTTGGAGTACATACCTGT
1 TCACATAACTACCTTATGATTTAGTGCAAATCAAGCTCACATATAAACTTGGAGTACATACCTGT
79434401 TTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTTACCCGGACATAATC
66 TTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTTACCCGGACATAATC
79434466 TCCACACGAAGTTATCGGGT
131 TCCACACGAAGTTATCGGGT
79434486 TCACATAACTACCTTATGATTTAGTGCAAATCAAGCTCACATATAAACTTGGAGTACATACCTGT
1 TCACATAACTACCTTATGATTTAGTGCAAATCAAGCTCACATATAAACTTGGAGTACATACCTGT
79434551 TTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTTACCCGGACATAATC
66 TTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTTACCCGGACATAATC
79434616 TCCACACGAAGTTATCGGGT
131 TCCACACGAAGTTATCGGGT
79434636 CTTACCCGGA
Statistics
Matches: 150, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
150 150 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (150 bp):
TCACATAACTACCTTATGATTTAGTGCAAATCAAGCTCACATATAAACTTGGAGTACATACCTGT
TTAACCTTTCGCATTGAATATATTTATAAGCAATTCTTATTACGAAGTCTTACCCGGACATAATC
TCCACACGAAGTTATCGGGT
Found at i:79434647 original size:37 final size:37
Alignment explanation
Indices: 79434597--79434675 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
79434587 TTATTACGAA
* *
79434597 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
79434634 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
79434671 GTCTT
1 GTCTT
79434676 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:79434872 original size:47 final size:47
Alignment explanation
Indices: 79434794--79435050 Score: 397
Period size: 47 Copynumber: 5.5 Consensus size: 47
79434784 CCCTTCGGGA
* * * * * * * * *
79434794 CTTATCACATTTATGCGCTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * * *
79434841 CCTGTCACATATATACTCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
79434888 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
79434935 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
79434982 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
79435029 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
79435051 TTGGCTGAAT
Statistics
Matches: 196, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 196 1.00
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:79448694 original size:27 final size:27
Alignment explanation
Indices: 79448662--79448843 Score: 228
Period size: 27 Copynumber: 6.7 Consensus size: 27
79448652 TACATCACAT
*
79448662 AGGGCAAAACAGTCATCTTACCATATA
1 AGGGCAAAACAGTCATTTTACCATATA
* *
79448689 AGGGCAAAATAATCATTTTACCACTA-A
1 AGGGCAAAACAGTCATTTTACCA-TATA
79448716 A-GGCAAAACAGTCATTTTACCATATA
1 AGGGCAAAACAGTCATTTTACCATATA
* *
79448742 AGGGGCAAAATAGTCATCTTACCATATA
1 A-GGGCAAAACAGTCATTTTACCATATA
* *
79448770 AGGGCAAAATAGTCATTTTACCAAATA
1 AGGGCAAAACAGTCATTTTACCATATA
79448797 AGGGCAAAACAGTCATTTTACCACT-TA
1 AGGGCAAAACAGTCATTTTACCA-TATA
*
79448824 AGGG-AGAAATAGTCATTTTA
1 AGGGCA-AAACAGTCATTTTA
79448844 TCAATTAGGG
Statistics
Matches: 137, Mismatches: 12, Indels: 12
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.01
26 22 0.16
27 87 0.64
28 26 0.19
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (27 bp):
AGGGCAAAACAGTCATTTTACCATATA
Found at i:79448834 original size:81 final size:80
Alignment explanation
Indices: 79448662--79448839 Score: 261
Period size: 81 Copynumber: 2.2 Consensus size: 80
79448652 TACATCACAT
* * *
79448662 AGGGCAAAACAGTCATCTTACCATATAAGGGCAAAATAATCATTTTACCACTAAAGGCAAAACAG
1 AGGGGAAAATAGTCATCTTACCATATAAGGGCAAAATAATCATTTTACCAATAAAGGCAAAACAG
79448727 TCATTTTACCATATA
66 TCATTTTACCATATA
* *
79448742 AGGGGCAAAATAGTCATCTTACCATATAAGGGCAAAATAGTCATTTTACCAAATAAGGGCAAAAC
1 AGGGG-AAAATAGTCATCTTACCATATAAGGGCAAAATAATCATTTTACC-AATAAAGGCAAAAC
79448807 AGTCATTTTACCACT-TA
64 AGTCATTTTACCA-TATA
79448824 A-GGGAGAAATAGTCAT
1 AGGGGA-AAATAGTCAT
79448840 TTTATCAATT
Statistics
Matches: 89, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
80 5 0.06
81 55 0.62
82 28 0.31
83 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.25
Consensus pattern (80 bp):
AGGGGAAAATAGTCATCTTACCATATAAGGGCAAAATAATCATTTTACCAATAAAGGCAAAACAG
TCATTTTACCATATA
Found at i:79458479 original size:16 final size:16
Alignment explanation
Indices: 79458447--79458479 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
79458437 TACACAAATC
*
79458447 AAAGAATTATTAGAAA
1 AAAGAATTAATAGAAA
79458463 AAAG-ATTAATAGAAA
1 AAAGAATTAATAGAAA
79458478 AA
1 AA
79458480 CTAATAACCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.67, C:0.00, G:0.12, T:0.21
Consensus pattern (16 bp):
AAAGAATTAATAGAAA
Found at i:79460226 original size:31 final size:31
Alignment explanation
Indices: 79460180--79460294 Score: 205
Period size: 31 Copynumber: 3.7 Consensus size: 31
79460170 TTAGTCTTGA
*
79460180 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
79460210 CATATCACTGGTCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
79460241 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
79460272 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
79460295 ACTGTAAACG
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.06
31 76 0.94
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:79460582 original size:26 final size:26
Alignment explanation
Indices: 79460515--79460585 Score: 101
Period size: 25 Copynumber: 2.8 Consensus size: 26
79460505 CTCTTTTAAT
*
79460515 AACTCGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTCTGATA
79460540 AACTGGGGCAAAGCCCTTTTC-GATA
1 AACTGGGGCAAAGCCCTTTTCTGATA
*
79460565 AACTGGGGCAGAGCCCCTTTT
1 AACTGGGGCAAAG-CCCTTTT
79460586 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
25 31 0.74
26 11 0.26
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTTCTGATA
Found at i:79462548 original size:40 final size:40
Alignment explanation
Indices: 79462454--79462588 Score: 157
Period size: 40 Copynumber: 3.4 Consensus size: 40
79462444 TATTCGAATG
* *
79462454 ATATCTGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
79462495 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
79462535 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
79462575 ATATCCGGGCTAAG
1 ATATCCGGGCTAAG
79462589 TATAAATGCC
Statistics
Matches: 79, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 49 0.62
41 28 0.35
42 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:79464380 original size:29 final size:27
Alignment explanation
Indices: 79464314--79464434 Score: 104
Period size: 27 Copynumber: 4.4 Consensus size: 27
79464304 ATCTACAAAC
*
79464314 CAAGGGTATTTC-AGTAA-TTTTGTAAAC
1 CAAGGGTATTTCTA-TAATTTTTG-AAAT
*
79464341 CAATGGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCTATAATTTTT-GAAA-T
*
79464370 CAAGGGTATTTCTATAATTTTTTAAAT
1 CAAGGGTATTTCTATAATTTTTGAAAT
* * **
79464397 CAGGGGTATTT-TGGTAATTTTACAAAT
1 CAAGGGTATTTCT-ATAATTTTTGAAAT
*
79464424 TAAGGGTATTT
1 CAAGGGTATTT
79464435 TGGTAATTTC
Statistics
Matches: 79, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.01
27 45 0.57
28 11 0.14
29 22 0.28
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.43
Consensus pattern (27 bp):
CAAGGGTATTTCTATAATTTTTGAAAT
Found at i:79464414 original size:27 final size:26
Alignment explanation
Indices: 79464389--79464549 Score: 148
Period size: 27 Copynumber: 6.1 Consensus size: 26
79464379 TTCTATAATT
*
79464389 TTTTA-AATCAGGGGTATTTTGGTAA
1 TTTTACAAACAGGGGTATTTTGGTAA
* *
79464414 TTTTACAAATTAAGGGTATTTTGGTAA
1 TTTTACAAA-CAGGGGTATTTTGGTAA
* * * *
79464441 TTTCACAAACCAGTGGT-TTTCGATAA
1 TTTTACAAA-CAGGGGTATTTTGGTAA
79464467 TTTTACAAACTAGGGGTATTTTGGTAA
1 TTTTACAAAC-AGGGGTATTTTGGTAA
79464494 TTTTACAAACTA-GGGTATTTTGGTAA
1 TTTTACAAAC-AGGGGTATTTTGGTAA
* ** **
79464520 TTCTATCCTACAGGGGTATTTCAGTAA
1 TTTTA-CAAACAGGGGTATTTTGGTAA
79464547 TTT
1 TTT
79464550 CATAATTGAG
Statistics
Matches: 110, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
25 6 0.05
26 41 0.37
27 63 0.57
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (26 bp):
TTTTACAAACAGGGGTATTTTGGTAA
Found at i:79464415 original size:56 final size:54
Alignment explanation
Indices: 79464307--79464497 Score: 140
Period size: 56 Copynumber: 3.5 Consensus size: 54
79464297 TTGATAAATC
* *
79464307 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAA-TTT
* * * * *
79464362 TAGAAAGTCAAGGGTATTTCTA-TAATTTTTTAAATCAGGGGTATTT-TGGTAATTT
1 TACAAA-TCAAGGGTATTTC-AGTAATTTTGTAAACCAAGGGTATTTCT-ATAATTT
* ** *** *
79464417 TACAAATTAAGGGTATTTTGGTAATTTCACAAACC-AGTGGT-TTTCGATAATTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAG-GGTATTTCTATAATTT
* **
79464470 TACAAA-CTAGGGGTATTTTGGTAATTTT
1 TACAAATC-AAGGGTATTTCAGTAATTTT
79464498 ACAAACTAGG
Statistics
Matches: 108, Mismatches: 21, Indels: 16
0.74 0.14 0.11
Matches are distributed among these distances:
53 34 0.31
54 24 0.22
55 14 0.13
56 35 0.32
57 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.41
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAATTT
Found at i:79464521 original size:53 final size:53
Alignment explanation
Indices: 79464400--79464521 Score: 174
Period size: 53 Copynumber: 2.3 Consensus size: 53
79464390 TTTAAATCAG
*
79464400 GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTCACAAACCA
* * * * *
79464453 GTGGT-TTTCGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTA
1 G-GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTCACAAACCA
79464506 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
79464522 CTATCCTACA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
52 3 0.05
53 53 0.90
54 3 0.05
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTCACAAACCA
Found at i:79464535 original size:53 final size:53
Alignment explanation
Indices: 79464411--79464551 Score: 142
Period size: 53 Copynumber: 2.7 Consensus size: 53
79464401 GGTATTTTGG
* * *
79464411 TAATTTTACAAATTAAGGGTATTTTGGTAATTTCACAAACCAGTGGTTTTCGA
1 TAATTCTACAAACTAGGGGTATTTTGGTAATTTCACAAACCAGTGGTTTTCGA
* * * * *
79464464 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG-GGTATTTTGG
1 TAATTCTACAAACTAGGGGTATTTTGGTAATTTCACAAACCAGTGGT-TTTCGA
** **
79464517 TAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCA
1 TAATTCTA-CAAACTAGGGGTATTTTGGTAATTTCA
79464552 TAATTGAGGG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
52 3 0.04
53 68 0.92
54 3 0.04
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.40
Consensus pattern (53 bp):
TAATTCTACAAACTAGGGGTATTTTGGTAATTTCACAAACCAGTGGTTTTCGA
Found at i:79464548 original size:80 final size:81
Alignment explanation
Indices: 79464373--79464549 Score: 206
Period size: 80 Copynumber: 2.2 Consensus size: 81
79464363 AGAAAGTCAA
** *
79464373 GGGTATTTCTA-TAATTTTTTAAATCAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTG
1 GGGTATTTC-AGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTG
79464437 GTAATTTCACAAACCAG
65 GTAATTTCACAAACCAG
*
79464454 TGGT-TTTC-GATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACT-AGGGTATTTT
1 GGGTATTTCAG-TAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTT
**
79464515 GGTAA-TTCTATCCTA-CAG
64 GGTAATTTC-A-CAAACCAG
79464533 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
79464550 CATAATTGAG
Statistics
Matches: 82, Mismatches: 7, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
78 3 0.04
79 23 0.28
80 52 0.63
81 4 0.05
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
TAATTTCACAAACCAG
Found at i:79464583 original size:27 final size:27
Alignment explanation
Indices: 79464557--79464750 Score: 235
Period size: 27 Copynumber: 7.2 Consensus size: 27
79464547 TTTCATAATT
* * *
79464557 GAGGGTAAAACGGCAATTTTGTAAATT
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
79464584 GAGGGTAAAATGGTAATTTTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
79464611 TAGGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
79464638 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
79464665 GAGGGTAAAACGATAATTTTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* * *
79464692 GAGGGTGAAACGATAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* **
79464719 GAGGGTAAAATGGTAATTCTACAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
79464746 GAGGG
1 GAGGG
79464751 CATTTCAGTA
Statistics
Matches: 149, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 149 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.29
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTCTGTAAATC
Found at i:79464670 original size:81 final size:81
Alignment explanation
Indices: 79464557--79464750 Score: 271
Period size: 81 Copynumber: 2.4 Consensus size: 81
79464547 TTTCATAATT
* * * * * * * * *
79464557 GAGGGTAAAACGGCAATTTTGTAAATTGAGGGTAAAATGGTAATTTTGTAAATCTAGGGTAAAAT
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAAC
* *
79464622 GGTAATTCTGTAAATC
66 GATAATTCTATAAATC
*
79464638 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTGAAAC
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAAC
79464703 GATAATTCTATAAATC
66 GATAATTCTATAAATC
*
79464719 GAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGG
79464751 CATTTCAGTA
Statistics
Matches: 100, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 100 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.29
Consensus pattern (81 bp):
GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAAC
GATAATTCTATAAATC
Found at i:79468097 original size:15 final size:15
Alignment explanation
Indices: 79468077--79468112 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
79468067 GTACAAACAA
79468077 AAAGATGATAAATGC
1 AAAGATGATAAATGC
*
79468092 AAAGATGCTAAATGC
1 AAAGATGATAAATGC
79468107 AAAGAT
1 AAAGAT
79468113 ATGTGGAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.53, C:0.08, G:0.19, T:0.19
Consensus pattern (15 bp):
AAAGATGATAAATGC
Found at i:79471726 original size:15 final size:16
Alignment explanation
Indices: 79471702--79471736 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
79471692 ATACAAAAAT
*
79471702 AAAAGAATTATTAGAA
1 AAAAGAATTAATAGAA
79471718 AAAAG-ATTAATAGAA
1 AAAAGAATTAATAGAA
79471733 AAAA
1 AAAA
79471737 CTAATAGCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.69, C:0.00, G:0.11, T:0.20
Consensus pattern (16 bp):
AAAAGAATTAATAGAA
Found at i:79476241 original size:29 final size:29
Alignment explanation
Indices: 79476165--79476231 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
79476155 TGGGTCGAAC
*
79476165 GGGCCATATAAATGTGATTTAGGCCTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
* * *
79476194 GGGCCATTTACAGGTGATTTGGGCCTAAT
1 GGGCCATATAAATGTGATTTGGGCCTAAT
79476223 GGGCCATAT
1 GGGCCATAT
79476232 GAATACGATT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (29 bp):
GGGCCATATAAATGTGATTTGGGCCTAAT
Found at i:79491636 original size:23 final size:23
Alignment explanation
Indices: 79491606--79491650 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
79491596 TTCAAAAATC
79491606 GACCTTAAGAGCGGTTATCACCT
1 GACCTTAAGAGCGGTTATCACCT
*
79491629 GACCTTAAGAGTGGTTATCACC
1 GACCTTAAGAGCGGTTATCACC
79491651 AAATACGGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (23 bp):
GACCTTAAGAGCGGTTATCACCT
Found at i:79495979 original size:28 final size:28
Alignment explanation
Indices: 79495918--79496796 Score: 1579
Period size: 28 Copynumber: 31.5 Consensus size: 28
79495908 ATATTGAGCC
* * *
79495918 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
* *
79495945 CGCACACTTAGTTCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79495973 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496001 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496029 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496057 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496085 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496113 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496141 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496169 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496197 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496225 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496253 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496281 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496309 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496337 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496365 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496393 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496421 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496449 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496477 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496505 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496533 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496561 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496589 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496617 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496645 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
79496673 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
** * *
79496701 CGCACACTTAGTGCCGCATGGTC-AATT
1 CGCACACTTAGTGCTACATAGTCAAACT
* **
79496728 CGCACACTTAGTGC-ATCATATTC-ATTT
1 CGCACACTTAGTGCTA-CATAGTCAAACT
* *
79496755 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAGTCAAACT
*
79496782 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
79496797 GTACAATTTA
Statistics
Matches: 831, Mismatches: 17, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
27 79 0.10
28 752 0.90
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Found at i:79497369 original size:104 final size:103
Alignment explanation
Indices: 79497120--79497370 Score: 258
Period size: 104 Copynumber: 2.4 Consensus size: 103
79497110 GGTTCTTGAG
* * * *
79497120 CTTAAATAATACAAATAAGAGTATTCAATATTTAACCCAATAACATGAATTTATTTATCACATCC
1 CTTAAATAACACAAATAACAGTATCCAATACTTAACCCAATAACATGAATTTATTTATCACATCC
** *
79497185 GGCAATCACACATCATTAAATTTTCAAACCAAGCTTGA
66 GGCAATCACACATCATTAAATTTTCAAACCAAAATTCA
* * * * *
79497223 GCTTAAATAATACAAATAAGAGTATTCAATATTTAACCCAATAACATGAATTTA-TT-TCACATT
1 -CTTAAATAACACAAATAACAGTATCCAATACTTAACCCAATAACATGAATTTATTTATCACATC
* *
79497286 CGGCAATCACATATCATTGAATTTTCAAACCAAAATGTCA
65 CGGCAATCACACATCATTAAATTTTCAAACCAAAAT-TCA
* * * *
79497326 -TTATATGACCACATATACACA-TATCCATATACTTAAGCTCAATAA
1 CTTAAAT-AACACAAATA-ACAGTATCCA-ATACTTAA-CCCAATAA
79497371 TTATAATGTA
Statistics
Matches: 128, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
101 5 0.04
102 50 0.39
103 13 0.10
104 60 0.47
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (103 bp):
CTTAAATAACACAAATAACAGTATCCAATACTTAACCCAATAACATGAATTTATTTATCACATCC
GGCAATCACACATCATTAAATTTTCAAACCAAAATTCA
Found at i:79500067 original size:27 final size:27
Alignment explanation
Indices: 79500011--79500340 Score: 491
Period size: 27 Copynumber: 12.3 Consensus size: 27
79500001 GGGGCAAAAT
* * * *
79500011 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
79500037 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
79500064 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
79500091 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
79500118 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
79500145 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
79500172 AATAATTCAACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
79500199 GGTAATTCTACCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
79500226 GGTAATTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
79500253 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
79500280 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
79500307 AGTAATTCTACCGTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
79500334 GGTAATT
1 GGTAATT
79500341 TCACAAATTA
Statistics
Matches: 277, Mismatches: 26, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
26 14 0.05
27 263 0.95
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:79500432 original size:54 final size:53
Alignment explanation
Indices: 79500324--79500502 Score: 128
Period size: 54 Copynumber: 3.3 Consensus size: 53
79500314 CTACCGTACA
** * ** * ***
79500324 AGGGTATTTCGGTAATTTCACAAATTAAGGGTATTTTGGTAATTTTATTGATCG
1 AGGGTATTTTAGTAATTTTACAAATCGAGCGTA-TTTGGTAATTTTACAAATCG
*
79500378 AGGGTATTTTAGTAATTTTGCAAA-CTGAGCGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTTAGTAATTTTACAAATC-GAGCGTATTT-GGTAATTTTACAAATCG
*** ** * * * *
79500432 AATATATTTGGGTAATTTTATAAATCGGGGGTACTTTGGTAATTTTACAACT-G
1 AGGGTATTTTAGTAATTTTACAAATCGAGCGTA-TTTGGTAATTTTACAAATCG
*
79500485 GGGGTATTTTAGTAATTT
1 AGGGTATTTTAGTAATTT
79500503 GGTAAACTAA
Statistics
Matches: 95, Mismatches: 26, Indels: 9
0.73 0.20 0.07
Matches are distributed among these distances:
53 16 0.17
54 75 0.79
55 4 0.04
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTACAAATCGAGCGTATTTGGTAATTTTACAAATCG
Found at i:79500440 original size:81 final size:81
Alignment explanation
Indices: 79500327--79500477 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
79500317 CCGTACAAGG
* * * ** *
79500327 GTATTTCGGTAATTTCACAAATTAAGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTAGTA
1 GTATTTCGGTAATTTCACAAATGAAGGATATTTGGGTAATTTTATAAATCGAGGGTACTTTAGTA
79500392 ATTTTGCAAACTGAGC
66 ATTTTGCAAACTGAGC
* * * *
79500408 GTATTTCGGTAATTTTACAAATCGAA-TATATTTGGGTAATTTTATAAATCGGGGGTACTTTGGT
1 GTATTTCGGTAATTTCACAAAT-GAAGGATATTTGGGTAATTTTATAAATCGAGGGTACTTTAGT
79500472 AATTTT
65 AATTTT
79500478 ACAACTGGGG
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
81 57 0.97
82 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (81 bp):
GTATTTCGGTAATTTCACAAATGAAGGATATTTGGGTAATTTTATAAATCGAGGGTACTTTAGTA
ATTTTGCAAACTGAGC
Found at i:79500472 original size:27 final size:26
Alignment explanation
Indices: 79500442--79500502 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
79500432 AATATATTTG
*
79500442 GGTAATTTTATAAATCGGGGGTACTTT
1 GGTAATTTTACAAAT-GGGGGTACTTT
* *
79500469 GGTAATTTTACAACTGGGGGTATTTT
1 GGTAATTTTACAAATGGGGGTACTTT
*
79500495 AGTAATTT
1 GGTAATTT
79500503 GGTAAACTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 17 0.57
27 13 0.43
ACGTcount: A:0.26, C:0.07, G:0.25, T:0.43
Consensus pattern (26 bp):
GGTAATTTTACAAATGGGGGTACTTT
Found at i:79500499 original size:26 final size:26
Alignment explanation
Indices: 79500325--79500502 Score: 115
Period size: 27 Copynumber: 6.7 Consensus size: 26
79500315 TACCGTACAA
* * **
79500325 GGGTATTTCGGTAATTTCACAAATTAA
1 GGGTATTTTGGTAATTTTACAAA-TGG
*** *
79500352 GGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTACAAAT-GG
* * *
79500379 GGGTATTTTAGTAATTTTGCAAACTGA
1 GGGTATTTTGGTAATTTTACAAA-TGG
* * *
79500406 GCGTATTTCGGTAATTTTACAAAT-C
1 GGGTATTTTGGTAATTTTACAAATGG
** *
79500431 GAATATATTTGGGTAATTTTATAAATCGG
1 GGGTAT-TTT-GGTAATTTTACAAAT-GG
* *
79500460 GGGTACTTTGGTAATTTTACAACTGG
1 GGGTATTTTGGTAATTTTACAAATGG
*
79500486 GGGTATTTTAGTAATTT
1 GGGTATTTTGGTAATTT
79500503 GGTAAACTAA
Statistics
Matches: 117, Mismatches: 28, Indels: 13
0.74 0.18 0.08
Matches are distributed among these distances:
25 4 0.03
26 21 0.18
27 85 0.73
28 4 0.03
29 3 0.03
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAATGG
Found at i:79509684 original size:13 final size:13
Alignment explanation
Indices: 79509666--79509692 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79509656 AGAACTTCCA
79509666 TACTGATGCCGTT
1 TACTGATGCCGTT
79509679 TACTGATGCCGTT
1 TACTGATGCCGTT
79509692 T
1 T
79509693 GTTTCTATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.41
Consensus pattern (13 bp):
TACTGATGCCGTT
Found at i:79511137 original size:28 final size:28
Alignment explanation
Indices: 79511071--79511332 Score: 384
Period size: 28 Copynumber: 9.4 Consensus size: 28
79511061 ATATTAAGTC
* * *
79511071 CGCACACTCAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
79511098 CGCACACCTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
79511126 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
79511154 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
79511182 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
79511210 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
79511238 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
79511266 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAATCAAACT
* * * *
79511293 CGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAA-TCAAACT
79511322 CGCACACTTAG
1 CGCACACTTAG
79511333 CGCCAATCTC
Statistics
Matches: 215, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
27 41 0.19
28 161 0.75
29 13 0.06
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Done.