Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 23 of 290
Found at i:7620657 original size:46 final size:46
Alignment explanation
Indices: 7620604--7620779 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
7620594 TATTTGGGCA
*
7620604 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
7620650 TCCGAACTCGTTGAGTTGAGTCCGAGTT---TGA-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--ATG
* * *
7620695 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
*
7620743 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7620780 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 1 0.01
43 7 0.06
45 3 0.03
46 62 0.56
47 26 0.24
48 2 0.02
50 8 0.07
51 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:7620759 original size:93 final size:93
Alignment explanation
Indices: 7620600--7620770 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
7620590 AGGATATTTG
* *
7620600 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAG
7620665 TTGAGTCCGAGTTTGAGAGATGTAACTA
66 TTGAGTCCGAGTTTGAGAGATGTAACTA
* * *
7620693 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG-CTCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CGAACTCGTTGA
7620757 GTTGAGTCCGAGTT
65 GTTGAGTCCGAGTT
7620771 CACTTATGGG
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTTGAGAGATGTAACTA
Found at i:7628236 original size:43 final size:43
Alignment explanation
Indices: 7628189--7628328 Score: 162
Period size: 43 Copynumber: 3.3 Consensus size: 43
7628179 ATCCTGGATG
*
7628189 TGGTCTTACATGTAAATCAATATCGATGCCGATGTCCCAGACA
1 TGGTCTTACACGTAAATCAATATCGATGCCGATGTCCCAGACA
* *
7628232 TGGTCCTATACG-AAATCAGATA-CGATGCCGATGTCCCAGACA
1 TGGTCTTACACGTAAATCA-ATATCGATGCCGATGTCCCAGACA
* * *
7628274 TGGTCTTATACGTAAATCTCAAT-T-GAGGCCTATGTCCCAGACA
1 TGGTCTTACACGTAAA--TCAATATCGATGCCGATGTCCCAGACA
*
7628317 CGGTCTTACACG
1 TGGTCTTACACG
7628329 ATGTCTCAGA
Statistics
Matches: 84, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
42 37 0.44
43 42 0.50
44 2 0.02
45 3 0.04
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (43 bp):
TGGTCTTACACGTAAATCAATATCGATGCCGATGTCCCAGACA
Found at i:7628259 original size:42 final size:43
Alignment explanation
Indices: 7628200--7628321 Score: 153
Period size: 42 Copynumber: 2.9 Consensus size: 43
7628190 GGTCTTACAT
7628200 GTAAATCAATATCGATGCCGATGTCCCAGACATGGTCCTATAC
1 GTAAATCAATATCGATGCCGATGTCCCAGACATGGTCCTATAC
*
7628243 G-AAATCAGATA-CGATGCCGATGTCCCAGACATGGTCTTATAC
1 GTAAATCA-ATATCGATGCCGATGTCCCAGACATGGTCCTATAC
* * *
7628285 GTAAATCTCAAT-T-GAGGCCTATGTCCCAGACACGGTC
1 GTAAA--TCAATATCGATGCCGATGTCCCAGACATGGTC
7628322 TTACACGATG
Statistics
Matches: 70, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
42 37 0.53
43 28 0.40
44 2 0.03
45 3 0.04
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (43 bp):
GTAAATCAATATCGATGCCGATGTCCCAGACATGGTCCTATAC
Found at i:7629421 original size:29 final size:29
Alignment explanation
Indices: 7629303--7629449 Score: 104
Period size: 29 Copynumber: 5.1 Consensus size: 29
7629293 ACATACATGC
* *
7629303 ATATGGCCCACTT-GGCCC-AATCTCATTT
1 ATATGGCCCA-TTAGGCCCAAATCACCTTT
* * ** *
7629331 ATATGGTCCATCAGGCCCATTTCACAC-TC
1 ATATGGCCCATTAGGCCCAAATCAC-CTTT
* * * ** *
7629360 ATATGGCTCATCAGGCCCAATTCATATTC
1 ATATGGCCCATTAGGCCCAAATCACCTTT
7629389 ATATGGCCCATTAGGCCCAAATCACCTTT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
* * *
7629418 ATATGGACCGTTAGGCCCAAATTACC-TT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
7629446 ATAT
1 ATAT
7629450 TCATGCTCAC
Statistics
Matches: 94, Mismatches: 21, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
27 1 0.01
28 20 0.21
29 73 0.78
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACCTTT
Found at i:7630324 original size:26 final size:26
Alignment explanation
Indices: 7630294--7630348 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
7630284 TCAGCTAAGC
7630294 GAAACAAAGAAAATTATGTAGAGAAA
1 GAAACAAAGAAAATTATGTAGAGAAA
7630320 GAAACAAAGAAAATTATGTAGAGAAA
1 GAAACAAAGAAAATTATGTAGAGAAA
7630346 GAA
1 GAA
7630349 TAGAAATCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.62, C:0.04, G:0.20, T:0.15
Consensus pattern (26 bp):
GAAACAAAGAAAATTATGTAGAGAAA
Found at i:7634598 original size:44 final size:44
Alignment explanation
Indices: 7634549--7634632 Score: 123
Period size: 44 Copynumber: 1.9 Consensus size: 44
7634539 CCAAAACATG
* * *
7634549 TGTCATACATATCACGAACTCAGACACAACTCAATGAGTTTGGA
1 TGTCATACATATCACGAACTCAAACACAACACAATAAGTTTGGA
* *
7634593 TGTCATATATATCATGAACTCAAACACAACACAATAAGTT
1 TGTCATACATATCACGAACTCAAACACAACACAATAAGTT
7634633 CAGATTACAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.26
Consensus pattern (44 bp):
TGTCATACATATCACGAACTCAAACACAACACAATAAGTTTGGA
Found at i:7640637 original size:23 final size:22
Alignment explanation
Indices: 7640599--7640658 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 22
7640589 GATTATATGA
7640599 TAATTAACTTTAATTAATTAGTT
1 TAATTAACTTTAATT-ATTAGTT
**
7640622 TAATTAAGCTTT-ATTATTCTTT
1 TAATTAA-CTTTAATTATTAGTT
7640644 TAATTAACTATTAAT
1 TAATTAACT-TTAAT
7640659 CACACTTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
21 2 0.06
22 14 0.44
23 12 0.38
24 4 0.12
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.53
Consensus pattern (22 bp):
TAATTAACTTTAATTATTAGTT
Found at i:7647804 original size:79 final size:81
Alignment explanation
Indices: 7647668--7647850 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
7647658 TCGAATGATG
* *
7647668 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
7647732 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
7647747 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
7647809 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
7647827 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
7647851 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:7647866 original size:40 final size:40
Alignment explanation
Indices: 7647669--7647852 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
7647659 CGAATGATGT
* * * *
7647669 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
7647709 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
7647749 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
7647787 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
7647828 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
7647853 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:7647874 original size:79 final size:79
Alignment explanation
Indices: 7647721--7647885 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
7647711 GGACTAAGAT
* **
7647721 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
7647786 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
7647800 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
7647863 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
7647879 CCGAAGG
1 CCGAAGG
7647886 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:7655862 original size:40 final size:40
Alignment explanation
Indices: 7655778--7655962 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
7655768 TCGAATGATG
* *
7655778 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAT
*
7655817 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAT
* * *
7655858 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
7655897 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
* *
7655936 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
7655963 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT
Found at i:7655914 original size:79 final size:81
Alignment explanation
Indices: 7655778--7655960 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
7655768 TCGAATGATG
* *
7655778 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
7655842 TGTGCAAGTTACTA-A
66 TGTGCAAGTTACTATA
* * * **
7655857 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
7655919 TTTGTGCGAGTTACTATA
64 TTTGTGCAAGTTACTATA
* *
7655937 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
7655961 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCAAGTTACTATA
Found at i:7655984 original size:79 final size:79
Alignment explanation
Indices: 7655831--7655995 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
7655821 GGACTAAGAT
* **
7655831 CCGAAGGCATTTGTGCAAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
7655896 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
7655910 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCAAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
7655973 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
7655989 CCGAAGG
1 CCGAAGG
7655996 TATGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:7659834 original size:19 final size:19
Alignment explanation
Indices: 7659797--7659834 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7659787 ACCTGTTAGA
*
7659797 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
7659816 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
7659835 TAAATTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:7665261 original size:24 final size:24
Alignment explanation
Indices: 7665191--7665263 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
7665181 TTTGAAAGCC
* *
7665191 CGCACACATAGTGCTCTTACTTAT-T
1 CGCACACATAGTGCT-ATA-TTTTCT
* *
7665216 CGCACACATAGTGCAATGTTTTCT
1 CGCACACATAGTGCTATATTTTCT
*
7665240 CGCACACATAGTGCTGTATTTTCT
1 CGCACACATAGTGCTATATTTTCT
7665264 TACCTTTAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
23 3 0.08
24 23 0.57
25 14 0.35
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (24 bp):
CGCACACATAGTGCTATATTTTCT
Found at i:7687134 original size:96 final size:96
Alignment explanation
Indices: 7686970--7687161 Score: 375
Period size: 96 Copynumber: 2.0 Consensus size: 96
7686960 ATCATAATAC
7686970 CTATGCAACTGTGTTTAATGAGATGAAATGTATACAAATGTATATGTATGTAGAGATGAAATTGT
1 CTATGCAACTGTGTTTAATGAGATGAAATGTATACAAATGTATATGTATGTAGAGATGAAATTGT
7687035 CGAATGTAAAAAGGCAGTGAAGCGTATAGAG
66 CGAATGTAAAAAGGCAGTGAAGCGTATAGAG
*
7687066 CTATGCAATTGTGTTTAATGAGATGAAATGTATACAAATGTATATGTATGTAGAGATGAAATTGT
1 CTATGCAACTGTGTTTAATGAGATGAAATGTATACAAATGTATATGTATGTAGAGATGAAATTGT
7687131 CGAATGTAAAAAGGCAGTGAAGCGTATAGAG
66 CGAATGTAAAAAGGCAGTGAAGCGTATAGAG
7687162 TGGTTGGTTT
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 95 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (96 bp):
CTATGCAACTGTGTTTAATGAGATGAAATGTATACAAATGTATATGTATGTAGAGATGAAATTGT
CGAATGTAAAAAGGCAGTGAAGCGTATAGAG
Found at i:7687251 original size:29 final size:29
Alignment explanation
Indices: 7687216--7687289 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
7687206 GTTGTGAGAT
* *
7687216 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
7687245 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
7687274 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
7687290 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:7689470 original size:40 final size:40
Alignment explanation
Indices: 7689405--7689518 Score: 104
Period size: 40 Copynumber: 2.8 Consensus size: 40
7689395 ACTATGTTTG
* **
7689405 GCACTTAGTGTGCGTTTCGAGATAGCTTTTGCTATATATA
1 GCACTTAGTGTGCGGTTCGAGATAGCTTCGGCTATATATA
* * *
7689445 GCACTTAGTGTGCGAGTTGGA-ATAGCTTCGGCTATATGTG
1 GCACTTAGTGTGCG-GTTCGAGATAGCTTCGGCTATATATA
** * * *
7689485 GCACCAAGTGTACGATATTGAGATAGCTTCGGCT
1 GCACTTAGTGTGCGGT-TCGAGATAGCTTCGGCT
7689519 TGATGTGATG
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.02
40 43 0.72
41 16 0.27
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (40 bp):
GCACTTAGTGTGCGGTTCGAGATAGCTTCGGCTATATATA
Found at i:7696900 original size:38 final size:38
Alignment explanation
Indices: 7696830--7696935 Score: 110
Period size: 38 Copynumber: 2.8 Consensus size: 38
7696820 CTTTATCATG
* * **
7696830 TATTCAATTCAATCAATAACATTAGATATGCTTAAC-CTA
1 TATTCAGTTCAA-CAATAACAGTAGGCATGCTTAACAC-A
*
7696869 TATT-AGGTTCAA-AATTAATAGTAGGCATGCTTAACACA
1 TATTCA-GTTCAACAA-TAACAGTAGGCATGCTTAACACA
7696907 TATTCAGTTCAACAATAACAGTAGGCATG
1 TATTCAGTTCAACAATAACAGTAGGCATG
7696936 TTGAACAAGT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
37 2 0.04
38 41 0.73
39 13 0.23
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (38 bp):
TATTCAGTTCAACAATAACAGTAGGCATGCTTAACACA
Found at i:7697624 original size:21 final size:21
Alignment explanation
Indices: 7697600--7697647 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
7697590 GATTGATTTC
*
7697600 AAGATTTGTCAAG-ATTAGCAA
1 AAGATTTGGCAAGAATT-GCAA
*
7697621 AAGATTTGGCAAGAATTGTAA
1 AAGATTTGGCAAGAATTGCAA
7697642 AAGATT
1 AAGATT
7697648 GAGTAGTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.44, C:0.06, G:0.21, T:0.29
Consensus pattern (21 bp):
AAGATTTGGCAAGAATTGCAA
Found at i:7697878 original size:17 final size:17
Alignment explanation
Indices: 7697860--7697892 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7697850 AGAGGAAAGA
7697860 AAAGAAAAAAGA-GAAG
1 AAAGAAAAAAGATGAAG
*
7697876 AAATAAAAAAGATGAAG
1 AAAGAAAAAAGATGAAG
7697893 TGAAGTCTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.73, C:0.00, G:0.21, T:0.06
Consensus pattern (17 bp):
AAAGAAAAAAGATGAAG
Found at i:7703010 original size:30 final size:30
Alignment explanation
Indices: 7702976--7703037 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
7702966 AATGTTACTA
7702976 CTACCATGTTTTTAAACCAAAACTGGAAAT
1 CTACCATGTTTTTAAACCAAAACTGGAAAT
7703006 CTACCATGTTTTTAAACCAAAACTGGAAAT
1 CTACCATGTTTTTAAACCAAAACTGGAAAT
7703036 CT
1 CT
7703038 TATCAATTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (30 bp):
CTACCATGTTTTTAAACCAAAACTGGAAAT
Found at i:7705444 original size:21 final size:21
Alignment explanation
Indices: 7705404--7705446 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
7705394 CAATTTGATT
7705404 ATTCTAAAATAATTATAAAAA
1 ATTCTAAAATAATTATAAAAA
7705425 ATTC-AAAATAATCT-TAAAAA
1 ATTCTAAAATAAT-TATAAAAA
7705445 AT
1 AT
7705447 ATATAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (21 bp):
ATTCTAAAATAATTATAAAAA
Found at i:7711007 original size:19 final size:19
Alignment explanation
Indices: 7710983--7711019 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
7710973 CACTCCCGCG
7710983 AACCTCACATCTTATGGCA
1 AACCTCACATCTTATGGCA
7711002 AACCTCACATCTTATGGC
1 AACCTCACATCTTATGGC
7711020 GGGATTACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.30, C:0.32, G:0.11, T:0.27
Consensus pattern (19 bp):
AACCTCACATCTTATGGCA
Found at i:7720993 original size:19 final size:19
Alignment explanation
Indices: 7720969--7721005 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7720959 TGTTGTTCTC
7720969 TAACACACATATTCATGCT
1 TAACACACATATTCATGCT
*
7720988 TAACACACATATTGATGC
1 TAACACACATATTCATGC
7721006 ATTGATTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.30
Consensus pattern (19 bp):
TAACACACATATTCATGCT
Found at i:7723431 original size:96 final size:96
Alignment explanation
Indices: 7723266--7723444 Score: 261
Period size: 96 Copynumber: 1.9 Consensus size: 96
7723256 GGGTGAATTA
* *
7723266 CCGATGCCATGTTCCAAACATGGTATTACACTGGCTCACATGTCGAGACCGAGACCATGTCCCAG
1 CCGATGCCATGTCCCAAACATGGTATTACACTGGCTCACATATCGAGACCGAGACCATGTCCCAG
7723331 ACATGGTCTTACACTAGCTCTCATTTCAATG
66 ACATGGTCTTACACTAGCTCTCATTTCAATG
* * * * **
7723362 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGGCGATG-CCATGTCCCA
1 CCGATGCCATGTCCCAAACATGGTATTACACTGGCTCACATATCGAGACCGA-GACCATGTCCCA
*
7723426 TACATGGTCTTACACTAGC
65 GACATGGTCTTACACTAGC
7723445 ACACATATCA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 72 0.99
97 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (96 bp):
CCGATGCCATGTCCCAAACATGGTATTACACTGGCTCACATATCGAGACCGAGACCATGTCCCAG
ACATGGTCTTACACTAGCTCTCATTTCAATG
Found at i:7723452 original size:48 final size:48
Alignment explanation
Indices: 7723266--7723453 Score: 209
Period size: 48 Copynumber: 3.9 Consensus size: 48
7723256 GGGTGAATTA
* * * * * * *
7723266 CCGATGCCATGTTCCAAACATGGTATTACACTGGCTCACATGTCGAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGTGG
* * *
7723314 CCGA-GACCATGTCCCAGACATGGTCTTACACTAGCTCTCATTTCAAT-G
1 CCGATG-CCATGTCCCAGACATGGTCTTACACTAGCTCACATATC-GTGG
* *
7723362 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGTGG
* * *
7723410 GCGATGCCATGTCCCATACATGGTCTTACACTAGCACACATATC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC
7723454 ACCCAAAGGT
Statistics
Matches: 119, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
47 2 0.02
48 116 0.97
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGTGG
Found at i:7735084 original size:26 final size:26
Alignment explanation
Indices: 7735030--7735084 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
7735020 ATTTTTCTTG
* *
7735030 AAATTTTACCGAGGGTAAAATCGTTA
1 AAATTTTACCGAGAGTAAAATCGTCA
* *
7735056 AAATTTTACCGCGAGTAAAATTGTCA
1 AAATTTTACCGAGAGTAAAATCGTCA
7735082 AAA
1 AAA
7735085 AATTTAACGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (26 bp):
AAATTTTACCGAGAGTAAAATCGTCA
Found at i:7737692 original size:87 final size:88
Alignment explanation
Indices: 7737520--7737698 Score: 324
Period size: 87 Copynumber: 2.0 Consensus size: 88
7737510 GTAAAGGTAA
* *
7737520 AGGTAAAGGTAATTCGAGATAGCTTGAAAGCAGCCTCTGTTCGAAAAAAAGTCTTATGCTGATTT
1 AGGTAAAGGTAATTCGAGATAGCTTGAAAGCAACCTCTGTTAGAAAAAAAGTCTTATGCTGATTT
7737585 GAAGAGAAAGGAAATAGAATTTC
66 GAAGAGAAAGGAAATAGAATTTC
*
7737608 AGGTAAAGGTAATTCGAGATAGCTTGAAAGCAACCTCTGTTAG-ACAAAAGTCTTATGCTGATTT
1 AGGTAAAGGTAATTCGAGATAGCTTGAAAGCAACCTCTGTTAGAAAAAAAGTCTTATGCTGATTT
7737672 GAAGAGAAAGGAAATAGAATTTC
66 GAAGAGAAAGGAAATAGAATTTC
7737695 AGGT
1 AGGT
7737699 TGGTGACAAG
Statistics
Matches: 88, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
87 47 0.53
88 41 0.47
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (88 bp):
AGGTAAAGGTAATTCGAGATAGCTTGAAAGCAACCTCTGTTAGAAAAAAAGTCTTATGCTGATTT
GAAGAGAAAGGAAATAGAATTTC
Found at i:7740233 original size:27 final size:27
Alignment explanation
Indices: 7739945--7740232 Score: 371
Period size: 27 Copynumber: 10.7 Consensus size: 27
7739935 TTTGGTTTAC
7739945 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* * * * *
7739972 AAAATTACTAGAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
* *
7739999 AAAATCACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
7740026 AAAATTACCAAAATACCCTTAGTTTAC
1 AAAATTACCAAAATACCCCTAGTTTGT
*
7740053 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
** * * *
7740080 AAAATTACTTAAATACCCTTTGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
7740107 -AAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
7740133 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
7740160 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
7740187 AAAATTACCAAAATACCCCTAATTTTGT
1 AAAATTACCAAAATACCCCT-AGTTTGT
* *
7740215 GAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
7740233 TTGACCTGTA
Statistics
Matches: 223, Mismatches: 36, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
26 21 0.09
27 180 0.81
28 22 0.10
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:7740246 original size:27 final size:27
Alignment explanation
Indices: 7739945--7740293 Score: 332
Period size: 27 Copynumber: 12.9 Consensus size: 27
7739935 TTTGGTTTAC
7739945 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
* * * * *
7739972 AAAATTACTAGAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
7739999 AAAATCACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* **
7740026 AAAATTACCAAAATA-CCCTTAGTTTAC
1 AAAATTACCAAAATACCCCTGA-TTTGT
*
7740053 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
** * *
7740080 AAAATTACTTAAATACCCTTTG-TTTAT
1 AAAATTACCAAAATACCC-CTGATTTGT
7740107 -AAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
*
7740133 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
7740160 AAAATTATCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
*
7740187 AAAATTACCAAAATACCCCTAATTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
* * * **
7740215 GAAATTACTAAAATACCCTTGACCTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*** * *
7740242 AAAATTATTGAAATACCCTTGACTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
7740269 GAAATTACCAAAGTACCCCTGATTT
1 AAAATTACCAAAATACCCCTGATTT
7740294 ACAGAATTAC
Statistics
Matches: 263, Mismatches: 49, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
25 1 0.00
26 23 0.09
27 209 0.79
28 30 0.11
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:7740361 original size:27 final size:27
Alignment explanation
Indices: 7740331--7740544 Score: 243
Period size: 27 Copynumber: 7.9 Consensus size: 27
7740321 ACAAAATTAT
*
7740331 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
7740358 CGAAATACCCTTATAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
7740385 CGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAAATAC
* * *
7740412 TGAAATACCCCTGAAGGGTAGAATTTAC
1 CGAAATACCCCTGTAGGGTAGAA-ATAC
** *
7740440 TAAAATACCCCTGTAGGGTTGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
*
7740467 CGAAATACCCTTGTAGGGTA-AAATTAC
1 CGAAATACCCCTGTAGGGTAGAAA-TAC
* *
7740494 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* * *
7740521 CGAGATACCCTTGTGGGGTA-AAAT
1 CGAAATACCCCTGTAGGGTAGAAAT
7740545 TACCATTTAC
Statistics
Matches: 160, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
26 6 0.04
27 129 0.81
28 25 0.16
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAAATAC
Found at i:7740474 original size:82 final size:82
Alignment explanation
Indices: 7740323--7740518 Score: 277
Period size: 82 Copynumber: 2.4 Consensus size: 82
7740313 CTCGATTTAC
* * * * *
7740323 AAAATTATCGAAATACCCTTGTAGGGTAGAA-ATACCGAAATACCCTTATAGGGTAGAAATACCG
1 AAAATTATTGAAATACCCCTGTAGGGTAGAATTTACCAAAATACCCCTATAGGGTAGAAATACCG
7740387 AAATACCCCTGTAGGGT
66 AAATACCCCTGTAGGGT
* * * * *
7740404 AGAATTATTGAAATACCCCTGAAGGGTAGAATTTACTAAAATACCCCTGTAGGGTTGAAATACCG
1 AAAATTATTGAAATACCCCTGTAGGGTAGAATTTACCAAAATACCCCTATAGGGTAGAAATACCG
*
7740469 AAATACCCTTGTAGGGT
66 AAATACCCCTGTAGGGT
*
7740486 AAAATTACTGAAATACCCCTGTAGGGTAGAATT
1 AAAATTATTGAAATACCCCTGTAGGGTAGAATT
7740519 ACCGAGATAC
Statistics
Matches: 100, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
81 27 0.27
82 73 0.73
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (82 bp):
AAAATTATTGAAATACCCCTGTAGGGTAGAATTTACCAAAATACCCCTATAGGGTAGAAATACCG
AAATACCCCTGTAGGGT
Found at i:7740529 original size:109 final size:109
Alignment explanation
Indices: 7740333--7740530 Score: 317
Period size: 109 Copynumber: 1.8 Consensus size: 109
7740323 AAAATTATCG
*
7740333 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTG
**
7740398 TAGGGTAGAATTATTGAAATACCCCTGAAGGGTAGAATTTACTA
66 TAGGGTAGAATTACCGAAATACCCCTGAAGGGTAGAATTTACTA
* * *
7740442 AAATACCCCTGTAGGGTTGAAATACCGAAATACCCTTGTAGGGTA-AAATTACTGAAATACCCCT
1 AAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTATAGGGTAGAAA-TACCGAAATACCCCT
*
7740506 GTAGGGTAGAATTACCGAGATACCC
65 GTAGGGTAGAATTACCGAAATACCC
7740531 TTGTGGGGTA
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
108 3 0.04
109 78 0.96
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (109 bp):
AAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTG
TAGGGTAGAATTACCGAAATACCCCTGAAGGGTAGAATTTACTA
Found at i:7740533 original size:54 final size:54
Alignment explanation
Indices: 7740323--7740547 Score: 283
Period size: 54 Copynumber: 4.1 Consensus size: 54
7740313 CTCGATTTAC
* *
7740323 AAAATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTATAGGGT
1 AAAATTACT-GAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
* * ** * *
7740377 AGAAA-TACCGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTGAAGGGT
1 A-AAATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
* * *
7740431 AGAATTTACTAAAATACCCCTGTAGGGTTGAAATACCGAAATACCCTTGTAGGGT
1 A-AAATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
* * *
7740486 AAAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
7740540 AAAATTAC
1 AAAATTAC
7740548 CATTTACCCC
Statistics
Matches: 145, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
54 100 0.69
55 45 0.31
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (54 bp):
AAAATTACTGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
Found at i:7740836 original size:27 final size:26
Alignment explanation
Indices: 7740792--7740843 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
7740782 CTCGCTGCAA
*
7740792 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
7740819 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
7740844 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:7740911 original size:69 final size:67
Alignment explanation
Indices: 7740773--7740912 Score: 181
Period size: 69 Copynumber: 2.1 Consensus size: 67
7740763 GAGGAAGTGT
* * * * *
7740773 TCTGGCAACCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAACCTCACTGCAATCTGGTGGCCTCGCCAAATATATCTGTTCTGGTGACCTAGCCACAA
7740838 TA
66 TA
* * * *
7740840 TCTGGCAGCCTCACTGCAATTTGGTGGCTTCGCCATAAATATATCTGTTCTGGTGGCCTAGCCAC
1 TCTGGCAACCTCACTGCAATCTGGTGGCCTCGCC--AAATATATCTGTTCTGGTGACCTAGCCAC
7740905 AATA
64 AATA
7740909 TCTG
1 TCTG
7740913 CATCTGGTGA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
67 30 0.48
69 32 0.52
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.31
Consensus pattern (67 bp):
TCTGGCAACCTCACTGCAATCTGGTGGCCTCGCCAAATATATCTGTTCTGGTGACCTAGCCACAA
TA
Found at i:7741068 original size:6 final size:6
Alignment explanation
Indices: 7741058--7741968 Score: 885
Period size: 6 Copynumber: 148.3 Consensus size: 6
7741048 TTACATTCAC
* * * *
7741058 ATTCTG GTTCTG ATTCTG -TTACCTG ATACCG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
7741108 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
*
7741157 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * *
7741206 GTTCTG ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* *
7741255 ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
7741304 ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
7741353 ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
7741402 -TTACCTA ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG ATTCTG -TTACCTA
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
7741452 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* *
7741501 ATTCTG GTTCTG ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * *
7741550 GTTCTG ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* *
7741599 ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
7741648 ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
7741697 ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
7741746 -TTACCTA ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG ATTCTG -TTACCTA
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
7741796 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* *
7741845 ATTCTG GTTCTG ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * *
7741894 ATTCTG ATTTTG ATTCTG -TCACCTG ATTTTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
7741943 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
7741969 AATGTTTCTT
Statistics
Matches: 752, Mismatches: 88, Indels: 130
0.78 0.09 0.13
Matches are distributed among these distances:
5 42 0.06
6 625 0.83
7 45 0.06
8 40 0.05
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:7741136 original size:43 final size:43
Alignment explanation
Indices: 7741065--7741947 Score: 1627
Period size: 43 Copynumber: 20.7 Consensus size: 43
7741055 CACATTCTGG
* *
7741065 TTCTGATTCT-GTTACCTGATACCGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTT--CTGATTCTGATTCTGATTCTGTTACCTAA
7741109 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
*
7741152 TTCTGATTCTGATTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741195 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741238 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741281 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741324 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741367 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741410 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741453 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741496 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741539 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741582 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741625 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741668 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741711 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741754 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741797 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
7741840 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
* * *
7741883 TTCTGA------TTCTGATTCTGATTTTGATTCTGTCACCTGA
1 TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
* *
7741920 TTTTGATTCTGATTCTGATTCTGATTCT
1 TTCTGATTCTGGTTCTGATTCTGATTCT
7741948 CATTTTGATT
Statistics
Matches: 823, Mismatches: 9, Indels: 15
0.97 0.01 0.02
Matches are distributed among these distances:
37 33 0.04
43 777 0.94
44 10 0.01
45 3 0.00
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.49
Consensus pattern (43 bp):
TTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTAA
Found at i:7745431 original size:20 final size:20
Alignment explanation
Indices: 7745403--7745446 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
7745393 TACCTACTTG
*
7745403 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
7745423 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
7745443 CAAC
1 CAAC
7745447 TTAAATATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:7751265 original size:38 final size:40
Alignment explanation
Indices: 7751182--7751268 Score: 106
Period size: 38 Copynumber: 2.2 Consensus size: 40
7751172 CAAATCCAAT
* * *
7751182 CACCACCACAAAGCATGCGGGACTTTAAGCCCGGATGTAA
1 CACCAGCACAAAGCATGCAGGACTTTAAGCCCGGATATAA
* * *
7751222 TACCAGCACAAAGCCTTCAGGAC-TT-AGCCCGGATATAA
1 CACCAGCACAAAGCATGCAGGACTTTAAGCCCGGATATAA
7751260 CACCAGCAC
1 CACCAGCAC
7751269 TGTTGTAGGC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
38 20 0.50
39 2 0.05
40 18 0.45
ACGTcount: A:0.33, C:0.32, G:0.20, T:0.15
Consensus pattern (40 bp):
CACCAGCACAAAGCATGCAGGACTTTAAGCCCGGATATAA
Found at i:7751507 original size:18 final size:18
Alignment explanation
Indices: 7751484--7751537 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
7751474 CCACCACCAA
7751484 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
7751502 CTCCACCA-CCA-A----
1 CTCCACTAGCCACACTTG
7751514 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
7751532 CTCCAC
1 CTCCAC
7751538 CACCTACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 7 0.25
13 3 0.11
14 1 0.04
16 1 0.04
17 3 0.11
18 13 0.46
ACGTcount: A:0.24, C:0.50, G:0.07, T:0.19
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:7751510 original size:30 final size:30
Alignment explanation
Indices: 7751474--7751572 Score: 180
Period size: 30 Copynumber: 3.3 Consensus size: 30
7751464 CTAGCGTTTG
7751474 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
7751504 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
7751534 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
7751564 CCACCACCA
1 CCACCACCA
7751573 CTTGTACCTA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.26, C:0.51, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:7752144 original size:23 final size:25
Alignment explanation
Indices: 7752051--7752182 Score: 84
Period size: 23 Copynumber: 5.6 Consensus size: 25
7752041 TTTGTTTTGT
* *
7752051 TATTAT-TATATTTC-TTAATATTA
1 TATTATGTATATATCATTAATACTA
* *
7752074 TATTATATATATATTCTTTTAATAC--
1 TATTATGTATATA-TC-ATTAATACTA
* * *
7752099 -ATTAGGTATAT-TC-TAAATTCTA
1 TATTATGTATATATCATTAATACTA
*
7752121 TATTACGTATATAT-ATT-ATACTA
1 TATTATGTATATATCATTAATACTA
* *
7752144 TTTTATGTATATATCTTTAATACTA
1 TATTATGTATATATCATTAATACTA
*
7752169 TATTATTTATATAT
1 TATTATGTATATAT
7752183 TTTTTTTCTA
Statistics
Matches: 84, Mismatches: 14, Indels: 20
0.71 0.12 0.17
Matches are distributed among these distances:
20 5 0.06
22 2 0.02
23 33 0.39
24 18 0.21
25 20 0.24
27 6 0.07
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.55
Consensus pattern (25 bp):
TATTATGTATATATCATTAATACTA
Found at i:7752156 original size:25 final size:25
Alignment explanation
Indices: 7752118--7752260 Score: 80
Period size: 25 Copynumber: 5.7 Consensus size: 25
7752108 ATTCTAAATT
*
7752118 CTATATTACGTATATATA-TT-ATA
1 CTATATTATGTATATATATTTAATA
* *
7752141 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATATTTAATA
* * *
7752166 CTATATTATTTATATATTTTTTTTCTACATG
1 CTATATTATGTATATA----TATT-TA-ATA
* *
7752197 TTATCTTATGTATATAT-TTTAAT-
1 CTATATTATGTATATATATTTAATA
* * * *
7752220 -TATATTATGTATGTATTTTTTACA
1 CTATATTATGTATATATATTTAATA
*
7752244 CTATATTATGTACATAT
1 CTATATTATGTATATAT
7752261 TTTTTTTATA
Statistics
Matches: 93, Mismatches: 16, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
22 14 0.15
23 19 0.20
24 4 0.04
25 33 0.35
26 2 0.02
27 1 0.01
29 3 0.03
30 2 0.02
31 15 0.16
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (25 bp):
CTATATTATGTATATATATTTAATA
Found at i:7752216 original size:27 final size:28
Alignment explanation
Indices: 7752145--7752252 Score: 86
Period size: 27 Copynumber: 4.0 Consensus size: 28
7752135 ATTATACTAT
7752145 TTTATGTATATATCTTTAATACTATATTA
1 TTTATGTATATAT-TTTAATACTATATTA
* * ** *
7752174 TTTATATAT-TTTTTTTCTAC-ATGTTA
1 TTTATGTATATATTTTAATACTATATTA
7752200 TCTTATGTATATATTTTAAT--TATATTA
1 T-TTATGTATATATTTTAATACTATATTA
* *
7752227 TGTATGTAT-T-TTTT-ACACTATATTA
1 TTTATGTATATATTTTAATACTATATTA
7752252 T
1 T
7752253 GTACATATTT
Statistics
Matches: 62, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
23 1 0.02
24 4 0.06
25 9 0.15
26 13 0.21
27 19 0.31
28 8 0.13
29 8 0.13
ACGTcount: A:0.30, C:0.06, G:0.05, T:0.59
Consensus pattern (28 bp):
TTTATGTATATATTTTAATACTATATTA
Found at i:7755423 original size:45 final size:46
Alignment explanation
Indices: 7755341--7755514 Score: 208
Period size: 47 Copynumber: 3.7 Consensus size: 46
7755331 TTAGGATTCT
* *
7755341 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTG-ATATATGTGATAAGGCCTAATGGCCG
7755388 ATGTGATGAATGTGAAAGTG-TATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGATATATGTGATAAGGCCTAATGGCCG
* * * * *
7755433 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTG-ATATATGTGATAAGGCCTAATGGCCG
* * *
7755480 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTG-ATATATGTGATAAG
7755515 TCCCGAAGGG
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
45 44 0.39
46 1 0.01
47 67 0.60
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.27
Consensus pattern (46 bp):
ATGTGATGAATGTGAAAGTGATATATGTGATAAGGCCTAATGGCCG
Found at i:7755440 original size:92 final size:93
Alignment explanation
Indices: 7755341--7755514 Score: 226
Period size: 92 Copynumber: 1.9 Consensus size: 93
7755331 TTAGGATTCT
* * * * *
7755341 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGCATATATGAGACAAGGCCGAATGGCCAACGTGATGAATGTGAAA
7755405 GTGTAT-ATGTGATAAGGCCTAATGGCCG
65 GTGTATAATGTGATAAGGCCTAATGGCCG
* * * * *
7755433 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGCATATATGAGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAG
7755498 TGTATAAATGTGATAAG
66 TGTAT-AATGTGATAAG
7755515 TCCCGAAGGG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
91 1 0.01
92 58 0.84
94 10 0.14
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.27
Consensus pattern (93 bp):
ATGTGATGAATGTGAAAGTGCATATATGAGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAG
TGTATAATGTGATAAGGCCTAATGGCCG
Found at i:7755472 original size:39 final size:42
Alignment explanation
Indices: 7755383--7755472 Score: 105
Period size: 45 Copynumber: 2.1 Consensus size: 42
7755373 AAGGCCTAAT
* * *
7755383 GGCCGATGTGATGAATGTGAAAGTGTATATGTGATAAGGCCTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGAT-A-GAC-AAG
7755428 GGCCGATGTGATGAATGTGAAAGTGTATATATG-T-GAC-AG
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGATAGACAAG
7755467 GGCCGA
1 GGCCGA
7755473 GTGGCCAACG
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
39 7 0.17
41 2 0.05
44 1 0.02
45 32 0.76
ACGTcount: A:0.30, C:0.10, G:0.33, T:0.27
Consensus pattern (42 bp):
GGCCGATGTGATGAATGTGAAAGTGTATATATGATAGACAAG
Found at i:7755689 original size:37 final size:37
Alignment explanation
Indices: 7755633--7755711 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
7755623 CCGAGCTCTA
* * *
7755633 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
7755670 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
7755707 AAGAC
1 AAGAC
7755712 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:7768406 original size:14 final size:14
Alignment explanation
Indices: 7768387--7768431 Score: 74
Period size: 14 Copynumber: 3.3 Consensus size: 14
7768377 CGCCGAGGTA
7768387 TTTTTAATTTCTGT
1 TTTTTAATTTCTGT
7768401 TTTTTAATTTCTG-
1 TTTTTAATTTCTGT
*
7768414 CTTTTAATTTCTGT
1 TTTTTAATTTCTGT
7768428 TTTT
1 TTTT
7768432 CAAAAATCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 12 0.43
14 16 0.57
ACGTcount: A:0.13, C:0.09, G:0.07, T:0.71
Consensus pattern (14 bp):
TTTTTAATTTCTGT
Found at i:7768431 original size:13 final size:13
Alignment explanation
Indices: 7768387--7768431 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
7768377 CGCCGAGGTA
7768387 TTTTTAATTTCTG
1 TTTTTAATTTCTG
7768400 TTTTTTAATTTCTG
1 -TTTTTAATTTCTG
*
7768414 CTTTTAATTTCTG
1 TTTTTAATTTCTG
7768427 TTTTT
1 TTTTT
7768432 CAAAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
13 16 0.55
14 13 0.45
ACGTcount: A:0.13, C:0.09, G:0.07, T:0.71
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:7768496 original size:100 final size:98
Alignment explanation
Indices: 7768319--7768682 Score: 398
Period size: 100 Copynumber: 3.8 Consensus size: 98
7768309 CCGTTTTTCC
* * * *
7768319 AATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACGCCGAG
1 AATTT-TGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* *
7768384 GTATTTTTAATTTCTGTTTTTTAATTTCTGCTTTT
65 GTATTTTCAATTTCT-TTTTTTAATTTATGCTTTT
* * *
7768419 AATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
1 AATTT-TGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* * **
7768484 GTATTTTCAATTTCTTTTTTTGAATTTTTTCCTTACA
65 GTATTTTCAATTTCTTTTTTT-AA-TTTATGCTT-TT
* *
7768521 AATTTTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACATGCTGAGG
1 AATTTTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
7768584 TATTTTCAAGTTT-TTTTTTTAATTTATG-TTTCT
66 TATTTTCAA-TTTCTTTTTTTAATTTATGCTTT-T
*
7768617 AA-----------AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
*
7768671 TAATTTCAATTT
66 TATTTTCAATTT
7768683 TTGTTTGTCA
Statistics
Matches: 233, Mismatches: 24, Indels: 28
0.82 0.08 0.10
Matches are distributed among these distances:
86 3 0.01
87 55 0.24
96 4 0.02
97 4 0.02
98 2 0.01
99 68 0.29
100 78 0.33
101 14 0.06
102 5 0.02
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.39
Consensus pattern (98 bp):
AATTTTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TATTTTCAATTTCTTTTTTTAATTTATGCTTTT
Found at i:7768811 original size:75 final size:75
Alignment explanation
Indices: 7768599--7769209 Score: 785
Period size: 73 Copynumber: 8.3 Consensus size: 75
7768589 TCAAGTTTTT
* * * * *
7768599 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
7768663 CGCTGAGGTA
66 CGTTGAGGTA
* * * * *
7768673 ATTTCAATTTTTGTTTGTC--AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
7768736 CGTTGAGGTA
66 CGTTGAGGTA
* * *
7768746 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTAAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
7768811 CGCTGAGGTA
66 CGTTGAGGTA
* * *
7768821 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
7768884 CGTTGAGGTA
66 CGTTGAGGTA
** * * *
7768894 TTTTCAATTTCTGCCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
7768959 CGTTGAGGTG
66 CGTTGAGGTA
* * *
7768969 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAATTGAACCTCAAG--A
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
7769032 CGTTGAGGTA
66 CGTTGAGGTA
* * * *
7769042 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
7769105 CGTTGAGGTA
66 CGTTGAGGTA
* * *
7769115 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAG--
1 TTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
* * *
7769178 ATGCTGAGGTG
65 ACGTTGAGGTA
* *
7769189 TTTTCCATTTCTGTTCTTCAA
1 TTTTCAATTTCTGTTTTTCAA
7769210 TTTCTGTGTT
Statistics
Matches: 466, Mismatches: 61, Indels: 21
0.85 0.11 0.04
Matches are distributed among these distances:
71 37 0.08
73 182 0.39
74 38 0.08
75 171 0.37
76 38 0.08
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (75 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
CGTTGAGGTA
Found at i:7768885 original size:148 final size:147
Alignment explanation
Indices: 7768599--7769209 Score: 775
Period size: 148 Copynumber: 4.1 Consensus size: 147
7768589 TCAAGTTTTT
* * * * *
7768599 TTTTTAATTTATGTTTCT-AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * * *
7768663 CGCTGAGGTAATTTCAATTTTTGTTTGTC-AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGC
66 CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
7768727 CTCAAGACACGTTGAGGTA
131 CTCAAG--ACGTTGAGGTA
* * *
7768746 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTAAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* *
7768811 CGCTGAGGTAATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
7768875 CTCAAGACACGTTGAGGTA
131 CTCAAG--ACGTTGAGGTA
** * * *
7768894 TTTTCAATTTCTGCCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* ** * * *
7768959 CGTTGAGGTGTTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAATTGAA
66 CGCTGAGGTAATTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAA
7769024 CCTCAAGACGTTGAGGTA
130 CCTCAAGACGTTGAGGTA
* * * *
7769042 ATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * *
7769105 CGTTGAGGTATTTTCAATTTCTGTCTT-TCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTG
66 CGCTGAGGTAATTTCAATTTCTGT-TTGTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * *
7769169 AACCTCAAGATGCTGAGGTG
128 AACCTCAAGACGTTGAGGTA
* *
7769189 TTTTCCATTTCTGTTCTTCAA
1 TTTTCAATTTCTGTTTTTCAA
7769210 TTTCTGTGTT
Statistics
Matches: 412, Mismatches: 45, Indels: 12
0.88 0.10 0.03
Matches are distributed among these distances:
146 66 0.16
147 79 0.19
148 229 0.56
150 38 0.09
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (147 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
CGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC
CTCAAGACGTTGAGGTA
Found at i:7769317 original size:15 final size:14
Alignment explanation
Indices: 7769281--7769313 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7769271 CACTGAGGTA
7769281 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
7769295 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
7769309 TTTTC
1 TTTTC
7769314 CAAAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:7769437 original size:181 final size:177
Alignment explanation
Indices: 7769115--7769658 Score: 530
Period size: 181 Copynumber: 3.0 Consensus size: 177
7769105 CGTTGAGGTA
* * * * *
7769115 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AG
1 TTTTCAATTTATG-CTTTC-CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* * * * *
7769178 ATGCTGAGGTGTTTTCCATTTCTGTTCTTCAATTTCTGTGTTTCAAAAAAAATCAGCTCATATTG
64 ATGCTGAGGTATTTTCAATTTCTATTTTTCAATTT-TGT-TTTC-AAAAAAATCAACTCATATTG
* *
7769243 CGAGTGATGAGTTGAGCCTTGACTCACACACTGAGGTATTTTCAAATTCTGT
126 CGAGAGGTGAGTTGAGCCTTGACTCACACACTGAGGTATTTTCAAATTCTGT
* * *
7769295 TTTTCAAATTT-TGTTTTTCCAAAAAATAAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGGAC
1 TTTTC-AATTTATG-CTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* * *
7769359 ACGCTGAGATATTTTCAATTTCTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTG
64 ATGCTGAGGTATTTTCAATTTC-TATTTTTCAATTT-TGTTT-TCAAAAAAATCAACTCATATTG
* * * * *
7769424 CGAGAGGTGAGTTGAGCCTCAGA-TCACACGCCGAGGTATTTTCAATTGATTTTTT
126 CGAGAGGTGAGTTGAGCCT-TGACTCACACACTGAGGTATTTTCAA---ATTCTGT
* *
7769479 TTCTTCAATTTATGCTTTGC-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCA
1 TT-TTCAATTTATGCTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--A
* * * ** *
7769543 CATACCGAGGCATTTTCAAAATCTATTTTACAAATTTTGTTTT---AAAAATCAACTCATATTGC
63 CATGCTGAGGTATTTTCAATTTCTATTTTTC-AATTTTGTTTTCAAAAAAATCAACTCATATTGC
* * ** * *
7769605 GAGAAGTGAGTTGAGCCTTGGCTCAC-GTCTGAGCTATTTTCAATTTCTGT
127 GAGAGGTGAGTTGAGCCTTGACTCACACACTGAGGTATTTTCAAATTCTGT
7769655 TTTT
1 TTTT
7769659 AATGCCTAAT
Statistics
Matches: 303, Mismatches: 46, Indels: 35
0.79 0.12 0.09
Matches are distributed among these distances:
175 2 0.01
176 6 0.02
179 50 0.17
180 52 0.17
181 82 0.27
182 18 0.06
183 39 0.13
184 27 0.09
185 27 0.09
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (177 bp):
TTTTCAATTTATGCTTTCCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAT
GCTGAGGTATTTTCAATTTCTATTTTTCAATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGA
GGTGAGTTGAGCCTTGACTCACACACTGAGGTATTTTCAAATTCTGT
Found at i:7769526 original size:93 final size:88
Alignment explanation
Indices: 7769224--7769622 Score: 387
Period size: 90 Copynumber: 4.4 Consensus size: 88
7769214 TGTGTTTCAA
* * * * *
7769224 AAAAAATCAGCTCATATTGCGAGTGATGAGTTGAGCCT-TGACTCACACACTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-TCACACACCGAGGTATTTTCAA
* * *
7769288 ATTCTGTTTTTCAAATTTTGTTTTTCC
65 ATTTTTTTTTTC-AATTTTG--TTTGC
* * * * * * *
7769315 AAAAAATAAACTCATATTGCGAGAGGTGAGTTCAGCCTCAG--GACACGCTGAGATATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACCGAGGTATTTTCAAA
7769378 TTCTTTTTTTTCAATTTATGTTTGTC
66 TT-TTTTTTTTCAATTT-TGTTTG-C
*
7769404 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACCGAGGTATTTTCAA
7769469 TTGATTTTTTTTCTTCAATTTATGCTTTGC
65 ---ATTTTTTTT-TTCAATTT-TG-TTTGC
* * * *
7769499 -AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTCACATACCGAGGCATTTTCAAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACCGAGGTATTTTCAAA
* * * *
7769563 ATCTATTTTACAAATTTTGTTT--
66 TTTTTTTTTTC-AATTTTGTTTGC
* *
7769585 TAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
7769623 TGGCTCACGT
Statistics
Matches: 264, Mismatches: 30, Indels: 32
0.81 0.09 0.10
Matches are distributed among these distances:
87 35 0.13
88 6 0.02
89 30 0.11
90 59 0.22
91 33 0.12
92 19 0.07
93 58 0.22
94 6 0.02
95 14 0.05
96 4 0.02
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (88 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACCGAGGTATTTTCAAA
TTTTTTTTTTCAATTTTGTTTGC
Found at i:7770376 original size:30 final size:30
Alignment explanation
Indices: 7770340--7770468 Score: 213
Period size: 30 Copynumber: 4.3 Consensus size: 30
7770330 CTAGCCTTTG
*
7770340 CCACCACCAACTCCACTAGCCACACTTGTT
1 CCACCACCAACTCCACTAGCCACACTTGCT
7770370 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
**
7770400 CCACCACTTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
7770430 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
7770460 CCACCACCA
1 CCACCACCA
7770469 CTTGTACCTA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 93 1.00
ACGTcount: A:0.26, C:0.49, G:0.06, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:7770403 original size:18 final size:18
Alignment explanation
Indices: 7770380--7770433 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
7770370 CCACCACCAA
7770380 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
7770398 CT-C-C-A--C-CACTTA
1 CTCCACTAGCCACACTTG
7770410 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
7770428 CTCCAC
1 CTCCAC
7770434 CACCTACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 7 0.25
13 2 0.07
14 1 0.04
15 2 0.07
16 1 0.04
17 2 0.07
18 13 0.46
ACGTcount: A:0.22, C:0.48, G:0.07, T:0.22
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:7771127 original size:22 final size:23
Alignment explanation
Indices: 7771097--7771163 Score: 73
Period size: 25 Copynumber: 2.9 Consensus size: 23
7771087 TTTCTACATG
*
7771097 TTATCTTATGTATATATTTTA-A
1 TTATATTATGTATATATTTTACA
*
7771119 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTACA
* *
7771144 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
7771164 TTTATATCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 11 0.30
23 6 0.16
24 8 0.22
25 12 0.32
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:7771174 original size:27 final size:25
Alignment explanation
Indices: 7771108--7771179 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 25
7771098 TATCTTATGT
* *
7771108 ATATATTTTAAT-TATATTATGTAT
1 ATATTTTTTAATCTATATTATGTAC
*
7771132 GTATTTTTTACA-CTATATTATGTAC
1 ATATTTTTTA-ATCTATATTATGTAC
*
7771157 ATATTTTTTTATATCTATTTTAT
1 ATA-TTTTTTA-ATCTATATTAT
7771180 ACATATGTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
24 8 0.21
25 14 0.37
26 8 0.21
27 8 0.21
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.60
Consensus pattern (25 bp):
ATATTTTTTAATCTATATTATGTAC
Found at i:7771254 original size:25 final size:24
Alignment explanation
Indices: 7771226--7771281 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
7771216 GTTATATTTT
*
7771226 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
7771251 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
7771274 CACTATTA
1 CACTATTA
7771282 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:7772168 original size:39 final size:39
Alignment explanation
Indices: 7772114--7772264 Score: 257
Period size: 39 Copynumber: 3.9 Consensus size: 39
7772104 GGTTTTGACA
*
7772114 AGCACGAATGCCTTCGGGACTTAGCCCGGGTATAACACC
1 AGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACC
*
7772153 AGCACGAATGCCTTCGGGACTTAGCCCGGATATAACAGC
1 AGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACC
*
7772192 AGCACGAATGCCTTCGGGACTTAGCCTGGATATAACACC
1 AGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACC
* *
7772231 AGTACGAATGCCTTCGGGACTTAGCCCGAATATA
1 AGCACGAATGCCTTCGGGACTTAGCCCGGATATA
7772265 TATCTCACAC
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 105 1.00
ACGTcount: A:0.28, C:0.28, G:0.25, T:0.20
Consensus pattern (39 bp):
AGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACC
Found at i:7775119 original size:42 final size:42
Alignment explanation
Indices: 7775072--7775153 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
7775062 AGAAAATGAA
7775072 TGTTGGGTGTTAAATAAACAACTTTTTCTAAGTGGATTTCGG
1 TGTTGGGTGTTAAATAAACAACTTTTTCTAAGTGGATTTCGG
*
7775114 TGTTGGGTGTTAAATAAACGACTTTTTCTAAGTGGATTTC
1 TGTTGGGTGTTAAATAAACAACTTTTTCTAAGTGGATTTC
7775154 AGTGAAAATG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.26, C:0.10, G:0.23, T:0.41
Consensus pattern (42 bp):
TGTTGGGTGTTAAATAAACAACTTTTTCTAAGTGGATTTCGG
Found at i:7775169 original size:42 final size:42
Alignment explanation
Indices: 7775079--7775169 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 42
7775069 GAATGTTGGG
* ****
7775079 TGTTAAATAAACAACTTTTTCTAAGTGGATTTCGGTGTTGGG
1 TGTTAAATAAACAACTTTTTCTAAGTGGATTTCAGTGTAAAA
*
7775121 TGTTAAATAAACGACTTTTTCTAAGTGGATTTCAGTG-AAAA
1 TGTTAAATAAACAACTTTTTCTAAGTGGATTTCAGTGTAAAA
7775162 TGCTTAAA
1 TG-TTAAA
7775170 ATGACCGTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 2 0.05
42 40 0.95
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (42 bp):
TGTTAAATAAACAACTTTTTCTAAGTGGATTTCAGTGTAAAA
Found at i:7794528 original size:56 final size:56
Alignment explanation
Indices: 7794442--7794673 Score: 464
Period size: 56 Copynumber: 4.1 Consensus size: 56
7794432 TATTAGTTTA
7794442 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
7794498 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
7794554 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
7794610 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
7794666 TTGCCCAT
1 TTGCCCAT
7794674 CATCCCTTGT
Statistics
Matches: 176, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 176 1.00
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:7794913 original size:16 final size:16
Alignment explanation
Indices: 7794894--7794924 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7794884 ATAATTATCA
7794894 CATTCAATTAATTTGT
1 CATTCAATTAATTTGT
7794910 CATTCAATTAATTTG
1 CATTCAATTAATTTG
7794925 GTGACTCGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.06, T:0.48
Consensus pattern (16 bp):
CATTCAATTAATTTGT
Found at i:7796400 original size:46 final size:46
Alignment explanation
Indices: 7796333--7796499 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 46
7796323 CGCCCCTAAG
* *
7796333 TGAACTCAGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCATAAA
* * * * *
7796379 TGAACTCGGACTCAACTCAACGAGTTCGTATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGCTCG---GGC-ATTTGCATCCATAAA
* * * *
7796426 CGAACTCGGACTCAACTCAACGAGCTTGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCATAAA
*
7796472 TGAACTCGGACTCAACTC-ACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGCTCGG
7796500 ATGCTCAACC
Statistics
Matches: 96, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 9 0.09
46 43 0.45
47 26 0.27
48 1 0.01
49 3 0.03
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCATAAA
Found at i:7796444 original size:93 final size:92
Alignment explanation
Indices: 7796334--7796503 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 92
7796324 GCCCCTAAGT
* *
7796334 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTC-A
*
7796399 CGAGTTCGTATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
7796427 GAACTCGGACTCAACTCAACGAGCTTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAC
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAC
7796492 GAGTTCGGATGC
66 GAGTTCGGATGC
7796504 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 13 0.18
93 58 0.82
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (92 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:7803989 original size:93 final size:93
Alignment explanation
Indices: 7803872--7804042 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
7803862 ACCCCTAAGT
* * * *
7803872 GAACTTGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAATGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
7803937 CGAGTTCAGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * *
7803965 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
*
7804030 CGAGTTCGGATGC
66 CGAGTTCAGATGC
7804043 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:7804026 original size:46 final size:46
Alignment explanation
Indices: 7803867--7804039 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
7803857 AAGCCACCCC
* * * * *
7803867 TAAGTGAACTTGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* * * * * *
7803913 TAAATGAACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTC-G--GAC-ATTTGCATCCA
* *
7803961 TCA-CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
*
7804006 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
7804040 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 2 0.02
46 55 0.55
47 25 0.25
48 2 0.02
49 3 0.03
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:7820584 original size:22 final size:22
Alignment explanation
Indices: 7820559--7820605 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
7820549 CACACGAGCT
* * *
7820559 TGTCCCTGTGTCCACACGGGTG
1 TGTCCCTGCGTCCACAAGGGCG
7820581 TGTCCCTGCGTCCACAAGGGCG
1 TGTCCCTGCGTCCACAAGGGCG
7820603 TGT
1 TGT
7820606 GACCCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.11, C:0.32, G:0.32, T:0.26
Consensus pattern (22 bp):
TGTCCCTGCGTCCACAAGGGCG
Found at i:7820611 original size:24 final size:22
Alignment explanation
Indices: 7820562--7820611 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
7820552 ACGAGCTTGT
* *
7820562 CCCTGTGTCCACACGGGTGTGT
1 CCCTGCGTCCACACGGGTGTGA
*
7820584 CCCTGCGTCCACAAGGGCGTGTGA
1 CCCTGCGTCCAC-ACGG-GTGTGA
7820608 CCCT
1 CCCT
7820612 ATTTCATGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 11 0.48
23 3 0.13
24 9 0.39
ACGTcount: A:0.12, C:0.36, G:0.30, T:0.22
Consensus pattern (22 bp):
CCCTGCGTCCACACGGGTGTGA
Found at i:7823764 original size:18 final size:18
Alignment explanation
Indices: 7823725--7823766 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
7823715 AATAAATTGA
*
7823725 AAAATTAAATATTAAAAT
1 AAAATTAAATATTAAAAG
*
7823743 AAAATTAAA-ATTTAAGAG
1 AAAATTAAATA-TTAAAAG
7823761 AAAATT
1 AAAATT
7823767 CAGTCTTACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (18 bp):
AAAATTAAATATTAAAAG
Found at i:7824304 original size:6 final size:6
Alignment explanation
Indices: 7824293--7824317 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7824283 CAATAAAAAA
7824293 AATTCT AATTCT AATTCT AATTCT A
1 AATTCT AATTCT AATTCT AATTCT A
7824318 CTCAAAGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (6 bp):
AATTCT
Found at i:7824381 original size:17 final size:18
Alignment explanation
Indices: 7824350--7824385 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
7824340 AATCAAATAT
7824350 ATGCATATTAATTTATTA
1 ATGCATATTAATTTATTA
*
7824368 ATGC-TATTACTTTATTA
1 ATGCATATTAATTTATTA
7824385 A
1 A
7824386 ACCAAGATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAATTTATTA
Found at i:7835509 original size:19 final size:17
Alignment explanation
Indices: 7835472--7835506 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7835462 GAAAAGAGTA
*
7835472 AACAAACACTAATAGAG
1 AACAAACACTAAGAGAG
*
7835489 AACAAACACTAAGGGAG
1 AACAAACACTAAGAGAG
7835506 A
1 A
7835507 GAAATCGGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.09
Consensus pattern (17 bp):
AACAAACACTAAGAGAG
Found at i:7848418 original size:22 final size:22
Alignment explanation
Indices: 7848403--7848453 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
7848393 ATCAAGCTAT
* *
7848403 CATCAATGGAAAATCATGAATA
1 CATCAACGGAAAATCAAGAATA
*
7848425 CATCAACGGAAAATCATGAATA
1 CATCAACGGAAAATCAAGAATA
7848447 CATCAAC
1 CATCAAC
7848454 AAATTCAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.49, C:0.20, G:0.12, T:0.20
Consensus pattern (22 bp):
CATCAACGGAAAATCAAGAATA
Found at i:7857975 original size:41 final size:43
Alignment explanation
Indices: 7857918--7858035 Score: 159
Period size: 43 Copynumber: 2.8 Consensus size: 43
7857908 TGTTTTCAGT
** * *
7857918 TATCGATGCCTCTGTCCAAGACAGGGTCTTACACG-AATCATA
1 TATCGATGCCAATGTCCCAGACATGGTCTTACACGTAATCATA
* *
7857960 TA-CGATGCCAATGTCCCAGAGATGGTCTTACACGTAATCTTA
1 TATCGATGCCAATGTCCCAGACATGGTCTTACACGTAATCATA
*
7858002 TATTGATGCCAATGTCCCAGACATGGTCTTACAC
1 TATCGATGCCAATGTCCCAGACATGGTCTTACAC
7858036 AAAATCACAT
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
41 27 0.41
42 10 0.15
43 29 0.44
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (43 bp):
TATCGATGCCAATGTCCCAGACATGGTCTTACACGTAATCATA
Found at i:7859685 original size:40 final size:40
Alignment explanation
Indices: 7859631--7859719 Score: 142
Period size: 40 Copynumber: 2.2 Consensus size: 40
7859621 TGGGTACCTG
* *
7859631 TCAGCTTGTGTGAGCAGCCCGTGTAGTTACGTCTTGACTA
1 TCAGCTTGTATGAGCAGCCCGTGTAGTTACATCTTGACTA
* *
7859671 TCATCTTGTATGAGCAGCCCGTGTAGTTACATCTTGACTG
1 TCAGCTTGTATGAGCAGCCCGTGTAGTTACATCTTGACTA
7859711 TCAGCTTGT
1 TCAGCTTGT
7859720 TTGAACAGGC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.18, C:0.22, G:0.25, T:0.35
Consensus pattern (40 bp):
TCAGCTTGTATGAGCAGCCCGTGTAGTTACATCTTGACTA
Found at i:7860979 original size:21 final size:21
Alignment explanation
Indices: 7860920--7860968 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
7860910 TTACTTCAAG
7860920 GAAGCTGATTGATCCATCTCA
1 GAAGCTGATTGATCCATCTCA
*
7860941 GAAGCCGATTGATCCATCTCA
1 GAAGCTGATTGATCCATCTCA
7860962 GAAGCTG
1 GAAGCTG
7860969 GATTCATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (21 bp):
GAAGCTGATTGATCCATCTCA
Found at i:7864297 original size:17 final size:17
Alignment explanation
Indices: 7864275--7864311 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
7864265 GAAGCACACG
7864275 AGTCGTTCTCAAGCACC
1 AGTCGTTCTCAAGCACC
7864292 AGTCGTTCTCAAGCACC
1 AGTCGTTCTCAAGCACC
7864309 AGT
1 AGT
7864312 AGAGCACCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (17 bp):
AGTCGTTCTCAAGCACC
Found at i:7864616 original size:51 final size:51
Alignment explanation
Indices: 7864556--7864657 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 51
7864546 GATTGATAGT
* *
7864556 AGGAATGAGGAGTATAAACTCCTCAAACCACCATGATCATTCAAC-GGAGAG
1 AGGAATGAGGAGTATAAACTCCTAAAACCACCATGACCATTC-ACTGGAGAG
* *
7864607 AGGAATGAGGAGTATAAACTTCTAAAACCACTATGACCATTCACTGGAGAG
1 AGGAATGAGGAGTATAAACTCCTAAAACCACCATGACCATTCACTGGAGAG
7864658 GTAAGTCGAG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 2 0.04
51 44 0.96
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.20
Consensus pattern (51 bp):
AGGAATGAGGAGTATAAACTCCTAAAACCACCATGACCATTCACTGGAGAG
Found at i:7864995 original size:54 final size:55
Alignment explanation
Indices: 7864910--7865035 Score: 173
Period size: 54 Copynumber: 2.3 Consensus size: 55
7864900 CGAGCCTACC
* *
7864910 AAAACAACACGGGCGTGCGACACGCCTGTGTGGAAGAACCATGGGCGAACC-GTT
1 AAAACAACACGGGCGTGCGACACGCCCGTGTGGAACAACCATGGGCGAACCTGTT
* * * *
7864964 AAAACAACACGGGCGTTCGACACGCCCGTGTGGAACAGCCGTGGTCGAACCTGTT
1 AAAACAACACGGGCGTGCGACACGCCCGTGTGGAACAACCATGGGCGAACCTGTT
**
7865019 AAATTAACACGGGCGTG
1 AAAACAACACGGGCGTG
7865036 GGGGTTTCAC
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
54 45 0.73
55 17 0.27
ACGTcount: A:0.29, C:0.26, G:0.30, T:0.15
Consensus pattern (55 bp):
AAAACAACACGGGCGTGCGACACGCCCGTGTGGAACAACCATGGGCGAACCTGTT
Found at i:7865094 original size:13 final size:13
Alignment explanation
Indices: 7865076--7865100 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7865066 AATGAAGCTA
7865076 GACACGGCCGTGC
1 GACACGGCCGTGC
7865089 GACACGGCCGTG
1 GACACGGCCGTG
7865101 TGAACCCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.08
Consensus pattern (13 bp):
GACACGGCCGTGC
Found at i:7865431 original size:61 final size:61
Alignment explanation
Indices: 7865356--7865477 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
7865346 GCTCAATCTC
7865356 TTTCCCCTAGCATTTGTTTACTCCTTTCACTTCTATTTTACTTATTTCTAATGCTTATTAT
1 TTTCCCCTAGCATTTGTTTACTCCTTTCACTTCTATTTTACTTATTTCTAATGCTTATTAT
*
7865417 TTTCCCTTAGCATTTGTTTACTCCTTTCACTTCTATTTTACTTATTTCTAATGCTTATTAT
1 TTTCCCCTAGCATTTGTTTACTCCTTTCACTTCTATTTTACTTATTTCTAATGCTTATTAT
7865478 CAACATAAAC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.18, C:0.22, G:0.05, T:0.55
Consensus pattern (61 bp):
TTTCCCCTAGCATTTGTTTACTCCTTTCACTTCTATTTTACTTATTTCTAATGCTTATTAT
Found at i:7873395 original size:43 final size:44
Alignment explanation
Indices: 7873294--7873401 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 44
7873284 GGTTACCAAG
* * *
7873294 ATGTGATTGCATGTAAGACCATGTCTGGGACATTAGCATCGTTA
1 ATGTGATTACATGTAAGACCATGTCTGGGACAATAGCATCGATA
*** * *
7873338 AT-TGATTTTGTGTAAGACCCTGTCTGGGACAATGGCATCGAT-
1 ATGTGATTACATGTAAGACCATGTCTGGGACAATAGCATCGATA
*
7873380 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
7873402 ATCTAGGAGA
Statistics
Matches: 51, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
42 2 0.04
43 47 0.92
44 2 0.04
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACAATAGCATCGATA
Found at i:7877079 original size:28 final size:27
Alignment explanation
Indices: 7877047--7877112 Score: 64
Period size: 28 Copynumber: 2.4 Consensus size: 27
7877037 TTGGAGGAAG
*
7877047 TACTG-TATTAGTGGCTTTGCCACGTAAT
1 TACTGCTATTAGTGGCTTTGCAACGT--T
* *
7877075 TACTGCT-CTGGTGGCTTTGCAACGTT
1 TACTGCTATTAGTGGCTTTGCAACGTT
*
7877101 TACTGTTATTAG
1 TACTGCTATTAG
7877113 CAGCACTACT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
26 7 0.23
27 2 0.07
28 20 0.67
29 1 0.03
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.41
Consensus pattern (27 bp):
TACTGCTATTAGTGGCTTTGCAACGTT
Found at i:7877656 original size:68 final size:68
Alignment explanation
Indices: 7877578--7877706 Score: 179
Period size: 68 Copynumber: 1.9 Consensus size: 68
7877568 TAGGAAAATG
* *
7877578 TGAGTTTTCAAAAAAATAACTATTTTCAAGGAAAGCACACATTTTGAAA-TTCAAGGTTTTTGGA
1 TGAGTATTCAAAAAAATAACTATTTTCAAGGAAAACACACATTTT-AAACTTCAAGGTTTTTGGA
7877642 AAGA
65 AAGA
* * * * *
7877646 TGAGTATTCAAAATAATAATTGTTTTCAAGGAAAATACGCATTTTAAACTTCAAGGTTTTT
1 TGAGTATTCAAAAAAATAACTATTTTCAAGGAAAACACACATTTTAAACTTCAAGGTTTTT
7877707 TTTAAAAAGC
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
67 3 0.06
68 50 0.94
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.36
Consensus pattern (68 bp):
TGAGTATTCAAAAAAATAACTATTTTCAAGGAAAACACACATTTTAAACTTCAAGGTTTTTGGAA
AGA
Found at i:7888615 original size:29 final size:30
Alignment explanation
Indices: 7888583--7888641 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 30
7888573 TAAAATAAAG
7888583 GTTAATAAAATAAGAAAACATAATA-TTTT
1 GTTAATAAAATAAGAAAACATAATAGTTTT
*
7888612 GTTAATAAAATAAGTAAACATAATAGTTTT
1 GTTAATAAAATAAGAAAACATAATAGTTTT
7888642 CTTCCCTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.36
Consensus pattern (30 bp):
GTTAATAAAATAAGAAAACATAATAGTTTT
Found at i:7889499 original size:19 final size:20
Alignment explanation
Indices: 7889467--7889510 Score: 81
Period size: 19 Copynumber: 2.2 Consensus size: 20
7889457 CAGAAAATGA
7889467 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
7889487 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATGATTTACT
7889506 TTTCT
1 TTTCT
7889511 AGTGTTTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.25, C:0.11, G:0.14, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:7889613 original size:14 final size:14
Alignment explanation
Indices: 7889594--7889627 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
7889584 TGTTTTTACA
7889594 TATATTAATAAATG
1 TATATTAATAAATG
*
7889608 TATATTAATAAATT
1 TATATTAATAAATG
7889622 TATATT
1 TATATT
7889628 TTAAATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (14 bp):
TATATTAATAAATG
Found at i:7890913 original size:32 final size:32
Alignment explanation
Indices: 7890867--7890946 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 32
7890857 TGTTAATCAT
*
7890867 TTCAATATCCAACAAGCTT-AAAACATAATAAA
1 TTCAATATCCAACAA-ATTCAAAACATAATAAA
** * *
7890899 TTCAATATGTAACAAATTCAAGACATAATAAT
1 TTCAATATCCAACAAATTCAAAACATAATAAA
*
7890931 TTCAAAATCCAACAAA
1 TTCAATATCCAACAAA
7890947 CTAAATTTTC
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 2 0.05
32 37 0.95
ACGTcount: A:0.53, C:0.17, G:0.04, T:0.26
Consensus pattern (32 bp):
TTCAATATCCAACAAATTCAAAACATAATAAA
Found at i:7892572 original size:16 final size:16
Alignment explanation
Indices: 7892551--7892581 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7892541 TGAAAATCTA
7892551 AAATTTTATGGACAAG
1 AAATTTTATGGACAAG
7892567 AAATTTTATGGACAA
1 AAATTTTATGGACAA
7892582 AATTGGAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.32
Consensus pattern (16 bp):
AAATTTTATGGACAAG
Found at i:7893753 original size:23 final size:23
Alignment explanation
Indices: 7893727--7893775 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
7893717 ATTTTTAAGA
7893727 AATATTTTGAAGTTTTTTATTTT
1 AATATTTTGAAGTTTTTTATTTT
7893750 AATATTTTGAAGTTTTTTATTTT
1 AATATTTTGAAGTTTTTTATTTT
7893773 AAT
1 AAT
7893776 TCCCCTTCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (23 bp):
AATATTTTGAAGTTTTTTATTTT
Found at i:7895264 original size:52 final size:52
Alignment explanation
Indices: 7895203--7895303 Score: 157
Period size: 52 Copynumber: 1.9 Consensus size: 52
7895193 AACAAAAGGG
** *
7895203 TATTAAACAGTATCTAGGGAATTGCCAAAATTACCTTTTAAAAAGTGGAGGA
1 TATTAAACAGTATCTACAGAATTGCCAAAATTACCTGTTAAAAAGTGGAGGA
* *
7895255 TATTCAACAGTATTTACAGAATTGCCAAAATTACCTGTTAAAAAGTGGA
1 TATTAAACAGTATCTACAGAATTGCCAAAATTACCTGTTAAAAAGTGGA
7895304 CTAGTAAAGA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.30
Consensus pattern (52 bp):
TATTAAACAGTATCTACAGAATTGCCAAAATTACCTGTTAAAAAGTGGAGGA
Found at i:7897119 original size:35 final size:35
Alignment explanation
Indices: 7897070--7897188 Score: 150
Period size: 35 Copynumber: 3.4 Consensus size: 35
7897060 ATGTGAAACA
* *
7897070 TAGGTATGGAATTTCTCATACCGAATGGTGACATG
1 TAGGTATGGTATTTCTCATACCGAATGGTGAAATG
* * * *
7897105 TAGGTATGGCATTTCCCATACCGAGTGGTGAAACG
1 TAGGTATGGTATTTCTCATACCGAATGGTGAAATG
* *
7897140 TAGGTATGGTATTT-TCCATACTGAATTGTGAAATG
1 TAGGTATGGTATTTCT-CATACCGAATGGTGAAATG
7897175 TAGGTATGGTATTT
1 TAGGTATGGTATTT
7897189 TAATGAGGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
35 72 1.00
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (35 bp):
TAGGTATGGTATTTCTCATACCGAATGGTGAAATG
Found at i:7905144 original size:18 final size:18
Alignment explanation
Indices: 7905116--7905159 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
7905106 AACAACGCCA
7905116 TGTTA-ATTTGTGT-TCTG
1 TGTTATATTTGTGTCT-TG
7905133 TGTTATATTTGTGTCTTG
1 TGTTATATTTGTGTCTTG
7905151 TGTTATATT
1 TGTTATATT
7905160 GTTAACAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.20
18 19 0.76
19 1 0.04
ACGTcount: A:0.14, C:0.05, G:0.20, T:0.61
Consensus pattern (18 bp):
TGTTATATTTGTGTCTTG
Found at i:7907195 original size:19 final size:19
Alignment explanation
Indices: 7907171--7907208 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7907161 TTTAATATTG
*
7907171 AATTTAATGTAATATTTAT
1 AATTTAATCTAATATTTAT
7907190 AATTTAATCTAATATTTAT
1 AATTTAATCTAATATTTAT
7907209 CAAGATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (19 bp):
AATTTAATCTAATATTTAT
Found at i:7913347 original size:22 final size:21
Alignment explanation
Indices: 7913293--7913348 Score: 94
Period size: 21 Copynumber: 2.6 Consensus size: 21
7913283 TCTGTAATTA
7913293 TTCATTTCGAACTCATATTTT
1 TTCATTTCGAACTCATATTTT
7913314 TTCATTTCGAACTCATATTTT
1 TTCATTTCGAACTCATATTTT
*
7913335 TTCATATCAGAACT
1 TTCATTTC-GAACT
7913349 TTGCCCGTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 28 0.85
22 5 0.15
ACGTcount: A:0.27, C:0.20, G:0.05, T:0.48
Consensus pattern (21 bp):
TTCATTTCGAACTCATATTTT
Found at i:7913534 original size:25 final size:25
Alignment explanation
Indices: 7913506--7913577 Score: 99
Period size: 25 Copynumber: 2.9 Consensus size: 25
7913496 TACGAGTTGT
** *
7913506 ATATCGGGAAGCTTTTGCGAGCCAA
1 ATATCGGGAAGCTCATGAGAGCCAA
7913531 ATATCGGGAAGCTCATGAGAGCCAA
1 ATATCGGGAAGCTCATGAGAGCCAA
* *
7913556 GTATCGGGAAGCTCAAGAGAGC
1 ATATCGGGAAGCTCATGAGAGC
7913578 TGTGGTGTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.32, C:0.19, G:0.31, T:0.18
Consensus pattern (25 bp):
ATATCGGGAAGCTCATGAGAGCCAA
Found at i:7916295 original size:17 final size:17
Alignment explanation
Indices: 7916273--7916305 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7916263 CTCTGCCTTT
7916273 CTTTTTCCTTTT-TTTTC
1 CTTTTT-CTTTTGTTTTC
7916290 CTTTTTCTTTTGTTTT
1 CTTTTTCTTTTGTTTT
7916306 TTTTTTCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (17 bp):
CTTTTTCTTTTGTTTTC
Found at i:7919853 original size:26 final size:27
Alignment explanation
Indices: 7919803--7919853 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
7919793 GAGCTAAAAT
*
7919803 TTAATTTATTTAAAAAATTCGATTCAA
1 TTAATTTATTTAAAAAATCCGATTCAA
* *
7919830 TTAATTT-TTTCAAAAATCCTATTC
1 TTAATTTATTTAAAAAATCCGATTC
7919854 TAAGCGATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 14 0.67
27 7 0.33
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (27 bp):
TTAATTTATTTAAAAAATCCGATTCAA
Found at i:7922731 original size:22 final size:21
Alignment explanation
Indices: 7922683--7922731 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 21
7922673 TATTTAAGCT
* *
7922683 ATTTAAAAAATTAAAATTTTA
1 ATTTAAAAAAATAAAATTATA
*
7922704 AATTAATAAAAATAAAATTATA
1 ATTTAA-AAAAATAAAATTATA
*
7922726 CTTTAA
1 ATTTAA
7922732 CTCTTAAAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (21 bp):
ATTTAAAAAAATAAAATTATA
Found at i:7926471 original size:22 final size:23
Alignment explanation
Indices: 7926407--7926505 Score: 73
Period size: 22 Copynumber: 4.5 Consensus size: 23
7926397 CACAAAAAGT
* *
7926407 AACACTAAAATAGCATCA-AAAC
1 AACACAAAAAAAGCATCACAAAC
* * * *
7926429 ATCACCAAACAA-CAT-AAAAAC
1 AACACAAAAAAAGCATCACAAAC
7926450 AACACAAAAAATAGCA-C-CAAAC
1 AACACAAAAAA-AGCATCACAAAC
* *
7926472 GACACAAAAAAAGCATCACCAAC
1 AACACAAAAAAAGCATCACAAAC
*
7926495 AACACCAAAAA
1 AACACAAAAAA
7926506 CCTGCAAAAT
Statistics
Matches: 59, Mismatches: 12, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
20 1 0.02
21 19 0.32
22 24 0.41
23 15 0.25
ACGTcount: A:0.62, C:0.27, G:0.04, T:0.07
Consensus pattern (23 bp):
AACACAAAAAAAGCATCACAAAC
Found at i:7926835 original size:20 final size:19
Alignment explanation
Indices: 7926807--7926845 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
7926797 GCATCCAATC
7926807 ATCAAAGCAAACAACGGCT
1 ATCAAAGCAAACAACGGCT
*
7926826 NATCATAGCAAACAACGGCT
1 -ATCAAAGCAAACAACGGCT
7926846 TGAACCGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.26, G:0.15, T:0.13
Consensus pattern (19 bp):
ATCAAAGCAAACAACGGCT
Found at i:7926928 original size:18 final size:19
Alignment explanation
Indices: 7926902--7926938 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
7926892 TCTTACCCAT
7926902 GCTAAAGTCGAT-TTGGAA
1 GCTAAAGTCGATGTTGGAA
*
7926920 GCTACAGTCGATGTTGGAA
1 GCTAAAGTCGATGTTGGAA
7926939 TTGCCAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.27
Consensus pattern (19 bp):
GCTAAAGTCGATGTTGGAA
Found at i:7930958 original size:56 final size:56
Alignment explanation
Indices: 7930891--7931122 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
7930881 TATTAGTTTA
* *
7930891 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
7930947 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
7931003 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
7931059 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
7931115 TTGCCCAT
1 TTGCCCAT
7931123 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:7932915 original size:10 final size:10
Alignment explanation
Indices: 7932863--7932922 Score: 52
Period size: 10 Copynumber: 6.1 Consensus size: 10
7932853 ATCTCATATA
*
7932863 TATTTTTAAT
1 TATTTATAAT
* *
7932873 TGTTTATGAT
1 TATTTATAAT
7932883 TA--TATAAT
1 TATTTATAAT
* *
7932891 TTTTTATACAA
1 TATTTATA-AT
7932902 TATTTATAAT
1 TATTTATAAT
7932912 TATTTATAAT
1 TATTTATAAT
7932922 T
1 T
7932923 TAACCATATA
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
8 6 0.16
10 24 0.63
11 8 0.21
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (10 bp):
TATTTATAAT
Found at i:7948186 original size:15 final size:15
Alignment explanation
Indices: 7948166--7948199 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
7948156 CTGTAATGTG
7948166 ATCTCACTCGATTCA
1 ATCTCACTCGATTCA
7948181 ATCTCACTCGATTCA
1 ATCTCACTCGATTCA
7948196 ATCT
1 ATCT
7948200 TTTTATTTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.32, G:0.06, T:0.35
Consensus pattern (15 bp):
ATCTCACTCGATTCA
Found at i:7962858 original size:21 final size:22
Alignment explanation
Indices: 7962832--7962878 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
7962822 CTCTGCTCAA
*
7962832 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
7962853 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
7962875 ACTC
1 ACTC
7962879 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:7972007 original size:19 final size:19
Alignment explanation
Indices: 7971963--7972009 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
7971953 CTTAACTGAG
7971963 ACTAATTTTTATTCTTCAT
1 ACTAATTTTTATTCTTCAT
* *
7971982 ATTTAATTTTATATT-TTTAT
1 A-CTAATTTT-TATTCTTCAT
7972002 ACTAATTT
1 ACTAATTT
7972010 CACTTTAAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 7 0.30
20 12 0.52
21 4 0.17
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.62
Consensus pattern (19 bp):
ACTAATTTTTATTCTTCAT
Found at i:7982945 original size:10 final size:10
Alignment explanation
Indices: 7982930--7982954 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7982920 CTAACTCTAA
7982930 AAATTAAAAT
1 AAATTAAAAT
7982940 AAATTAAAAT
1 AAATTAAAAT
7982950 AAATT
1 AAATT
7982955 TATTTTTAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
AAATTAAAAT
Found at i:7983209 original size:23 final size:23
Alignment explanation
Indices: 7983169--7983212 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
7983159 TAATTAAACC
7983169 TAAAATATTAATAATTAAAATTA
1 TAAAATATTAATAATTAAAATTA
* * *
7983192 TAAAATTTTTATATTTAAAAT
1 TAAAATATTAATAATTAAAAT
7983213 CAAATTAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TAAAATATTAATAATTAAAATTA
Found at i:7987360 original size:21 final size:21
Alignment explanation
Indices: 7987334--7987382 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
7987324 CAGAAACAGT
* *
7987334 TATACCGGAGGATCATCGATG
1 TATACCGGACGATCATCGACG
*
7987355 TATACCGGTCGATCATCGACG
1 TATACCGGACGATCATCGACG
7987376 TATACCG
1 TATACCG
7987383 ATCATCAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (21 bp):
TATACCGGACGATCATCGACG
Found at i:7991852 original size:7 final size:7
Alignment explanation
Indices: 7991840--7991869 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
7991830 ACTCACCGTA
7991840 TGGAAAG
1 TGGAAAG
*
7991847 TGGAAAA
1 TGGAAAG
7991854 TGGAAAG
1 TGGAAAG
7991861 TGGAAAG
1 TGGAAAG
7991868 TG
1 TG
7991870 TGTGTTTCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.40, T:0.17
Consensus pattern (7 bp):
TGGAAAG
Found at i:7997919 original size:14 final size:14
Alignment explanation
Indices: 7997900--7997929 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7997890 TCAATACTAA
7997900 TGGCAAACAACTTT
1 TGGCAAACAACTTT
*
7997914 TGGCAAACCACTTT
1 TGGCAAACAACTTT
7997928 TG
1 TG
7997930 TTGAATTGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (14 bp):
TGGCAAACAACTTT
Found at i:7998729 original size:16 final size:16
Alignment explanation
Indices: 7998666--7998730 Score: 55
Period size: 15 Copynumber: 4.1 Consensus size: 16
7998656 TCAATTCAAA
7998666 TAATTT-TA-TTAAAT
1 TAATTTATATTTAAAT
* *
7998680 GAATTTATATGATAAAT
1 TAATTTATAT-TTAAAT
* *
7998697 AAATTTTAAATTT-AAT
1 TAA-TTTATATTTAAAT
7998713 TAATTTATATTTAAAT
1 TAATTTATATTTAAAT
7998729 TA
1 TA
7998731 TTATGTTTGA
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
14 5 0.13
15 10 0.26
16 10 0.26
17 8 0.21
18 6 0.15
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (16 bp):
TAATTTATATTTAAAT
Done.