Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 230 of 290
Found at i:79515054 original size:30 final size:30
Alignment explanation
Indices: 79515006--79515066 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
79514996 TCCTTAACTC
*
79515006 AAACTTTTGGAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * * *
79515036 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
79515066 A
1 A
79515067 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:79519756 original size:18 final size:20
Alignment explanation
Indices: 79519733--79519776 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
79519723 TATGGGTAGG
*
79519733 CCGTGTGG-TC-GTACACGC
1 CCGTGTGGCTCGGGACACGC
79519751 CCGTGTGGCTCGGGACACGC
1 CCGTGTGGCTCGGGACACGC
79519771 CCGTGT
1 CCGTGT
79519777 CCTCAGCCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.35
19 2 0.09
20 13 0.57
ACGTcount: A:0.09, C:0.34, G:0.36, T:0.20
Consensus pattern (20 bp):
CCGTGTGGCTCGGGACACGC
Found at i:79524470 original size:43 final size:43
Alignment explanation
Indices: 79524409--79524495 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
79524399 ATACTCCTCA
* *
79524409 TTCCTACTATCATTCTCATCGAAATAAGGTTTTAGATGGGTGT
1 TTCCTACTATCATTCTCATCAAAATAAGGTTTTAGACGGGTGT
*
79524452 TTCCTGCTATCATTCTCATCAAAATAAGGTTTTAGACGGGTGT
1 TTCCTACTATCATTCTCATCAAAATAAGGTTTTAGACGGGTGT
79524495 T
1 T
79524496 GTTTACCTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.39
Consensus pattern (43 bp):
TTCCTACTATCATTCTCATCAAAATAAGGTTTTAGACGGGTGT
Found at i:79528918 original size:20 final size:20
Alignment explanation
Indices: 79528893--79528957 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
79528883 TGTCTCATAA
79528893 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
** * * * *
79528913 TCATGAGTTCAAATAACATAAA
1 TCATGAACTC--AGACCACAAC
79528935 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
79528955 TCA
1 TCA
79528958 ATGAGTTCAG
Statistics
Matches: 31, Mismatches: 12, Indels: 4
0.66 0.26 0.09
Matches are distributed among these distances:
20 17 0.55
22 14 0.45
ACGTcount: A:0.43, C:0.28, G:0.09, T:0.20
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:79537774 original size:11 final size:11
Alignment explanation
Indices: 79537758--79537784 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
79537748 TTATATGATA
79537758 TATTATTATTT
1 TATTATTATTT
79537769 TATTATTATTT
1 TATTATTATTT
79537780 TATTA
1 TATTA
79537785 GTATATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
TATTATTATTT
Found at i:79537780 original size:33 final size:34
Alignment explanation
Indices: 79537725--79537793 Score: 81
Period size: 33 Copynumber: 2.1 Consensus size: 34
79537715 AATTAGTAGT
79537725 TATTAATATTTTAATTTGATTTT-TTA-TATGATA
1 TATTAATATTTTAATTTGATTTTATTAGTAT-ATA
* *
79537758 TATTATTATTTT-ATTATTATTTTATTAGTATATA
1 TATTAATATTTTAATT-TGATTTTATTAGTATATA
79537792 TA
1 TA
79537794 AAGAAAGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
32 3 0.10
33 17 0.55
34 8 0.26
35 3 0.10
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (34 bp):
TATTAATATTTTAATTTGATTTTATTAGTATATA
Found at i:79545244 original size:188 final size:188
Alignment explanation
Indices: 79544943--79545318 Score: 626
Period size: 188 Copynumber: 2.0 Consensus size: 188
79544933 AATACCGCAG
79544943 GGGCATTAGTGAGCCCAAACGGCATCACTAAGAACTCGTAGTGACCATATCTCGTTCTGAAAGCA
1 GGGCATTAGTGAGCCCAAACGGCATCACTAAGAACTCGTAGTGACCATATCTCGTTCTGAAAGCA
79545008 GTTTTGGGTATATCCGAATCCCGAATTCGCAACTGATAATAACCCGATCTCAAATCTATCTTTGA
66 GTTTTGGGTATATCCGAATCCCGAATTCGCAACTGATAATAACCCGATCTCAAATCTATCTTTGA
*
79545073 AAACACTAAGGCTCCCTTTAGTTGATCAAACAAATCATCAATACGCGGTAACGGATAT
131 AAACACTAAGGCTCCCTTCAGTTGATCAAACAAATCATCAATACGCGGTAACGGATAT
*
79545131 GGGCATTAGTGAGCCCAAACGGCATCACTAAGAACTCGTAGTGACCATATCTCGTTCTGAAGGCA
1 GGGCATTAGTGAGCCCAAACGGCATCACTAAGAACTCGTAGTGACCATATCTCGTTCTGAAAGCA
* * * * *
79545196 GTTTTGGGTATGTCCGAATCTCGAATTCGCAACTGCTAATAGCCCGATCTCAAATCTATTTTTGA
66 GTTTTGGGTATATCCGAATCCCGAATTCGCAACTGATAATAACCCGATCTCAAATCTATCTTTGA
* * * * * * *
79545261 GAACACTGAGGCTCCCTTCAGTTGGTCGAACAAATCATCGATTCGTGGTAACGGATAT
131 AAACACTAAGGCTCCCTTCAGTTGATCAAACAAATCATCAATACGCGGTAACGGATAT
79545319 TTGTTCTTTA
Statistics
Matches: 174, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
188 174 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (188 bp):
GGGCATTAGTGAGCCCAAACGGCATCACTAAGAACTCGTAGTGACCATATCTCGTTCTGAAAGCA
GTTTTGGGTATATCCGAATCCCGAATTCGCAACTGATAATAACCCGATCTCAAATCTATCTTTGA
AAACACTAAGGCTCCCTTCAGTTGATCAAACAAATCATCAATACGCGGTAACGGATAT
Found at i:79548987 original size:79 final size:81
Alignment explanation
Indices: 79548885--79549069 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
79548875 GCTCCTCGTT
* *
79548885 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
* *
79548947 CGGATTTAGTAAC-TCGCA
63 CGGATATAGTAACTTAGCA
**
79548965 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
79549029 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
79549045 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79549070 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 5 0.05
79 53 0.58
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:79549069 original size:40 final size:40
Alignment explanation
Indices: 79548885--79549069 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
79548875 GCTCCTCGTT
* * *
79548885 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* *
79548925 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
79548965 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACT-TCGCA
* * *
79549004 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
79549045 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79549070 CATCATTCAA
Statistics
Matches: 124, Mismatches: 11, Indels: 20
0.80 0.07 0.13
Matches are distributed among these distances:
38 3 0.02
39 30 0.24
40 76 0.61
41 14 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:79550040 original size:37 final size:37
Alignment explanation
Indices: 79549990--79550064 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
79549980 TAGACCATGG
79549990 GCTAGGTAGAACTCAAGCTAACAACAAAAATATGCAT
1 GCTAGGTAGAACTCAAGCTAACAACAAAAATATGCAT
*
79550027 GCTAGGTAGAACTCAAGCTAACAACTAAAATATGCAT
1 GCTAGGTAGAACTCAAGCTAACAACAAAAATATGCAT
79550064 G
1 G
79550065 TATCTCATGG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.20
Consensus pattern (37 bp):
GCTAGGTAGAACTCAAGCTAACAACAAAAATATGCAT
Found at i:79552267 original size:19 final size:19
Alignment explanation
Indices: 79552243--79552290 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
79552233 TTTTGGACTT
*
79552243 AATGGGCCGAAAACGGGCC
1 AATGGGCCAAAAACGGGCC
*
79552262 AATGGGCCAAAAATGGGCC
1 AATGGGCCAAAAACGGGCC
79552281 AATGGGCCAA
1 AATGGGCCAA
79552291 TGGGCCCACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.35, C:0.23, G:0.33, T:0.08
Consensus pattern (19 bp):
AATGGGCCAAAAACGGGCC
Found at i:79552270 original size:8 final size:8
Alignment explanation
Indices: 79552257--79552296 Score: 53
Period size: 8 Copynumber: 4.6 Consensus size: 8
79552247 GGCCGAAAAC
79552257 GGGCCAAT
1 GGGCCAAT
79552265 GGGCCAAAAAT
1 GGGCC---AAT
79552276 GGGCCAAT
1 GGGCCAAT
79552284 GGGCCAAT
1 GGGCCAAT
79552292 GGGCC
1 GGGCC
79552297 CACTTTGGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 21 0.72
11 8 0.28
ACGTcount: A:0.28, C:0.25, G:0.38, T:0.10
Consensus pattern (8 bp):
GGGCCAAT
Found at i:79555412 original size:109 final size:110
Alignment explanation
Indices: 79555221--79555440 Score: 388
Period size: 109 Copynumber: 2.0 Consensus size: 110
79555211 GGTCGCTGGC
* *
79555221 TGTGCGCTCAAAGGAGACTGTGAGTGGGGTATCTGTACTAATTCCTTTGGGTCACTCGGTTAGGG
1 TGTGCGCTCAAAGGAGACCGTGAGTGGGGTATCTGTACTAAGTCCTTTGGGTCACTCGGTTAGGG
79555286 TAGATAAACTGTATAGAGAT-TGCCTATAGAAACTCAAGGAAAAG
66 TAGATAAACTGTATAGAGATGTGCCTATAGAAACTCAAGGAAAAG
**
79555330 TGTGCGCTCTGAGGAGACCGTGAGTGGGGTATCTGTACTAAGTCCTTTGGGTCACTCGGTTAGGG
1 TGTGCGCTCAAAGGAGACCGTGAGTGGGGTATCTGTACTAAGTCCTTTGGGTCACTCGGTTAGGG
*
79555395 TAGATAAATTGTATAGAGATGTGCCTATAGAAACTCAAGGAAAAG
66 TAGATAAACTGTATAGAGATGTGCCTATAGAAACTCAAGGAAAAG
79555440 T
1 T
79555441 TTTCTCTAGA
Statistics
Matches: 105, Mismatches: 5, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
109 80 0.76
110 25 0.24
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (110 bp):
TGTGCGCTCAAAGGAGACCGTGAGTGGGGTATCTGTACTAAGTCCTTTGGGTCACTCGGTTAGGG
TAGATAAACTGTATAGAGATGTGCCTATAGAAACTCAAGGAAAAG
Found at i:79559536 original size:19 final size:19
Alignment explanation
Indices: 79559512--79559557 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
79559502 TTTTGGGCTT
79559512 AATGGGCCGAAAACGGGCC
1 AATGGGCCGAAAACGGGCC
* *
79559531 AATGGGTCGAAAATGGGCC
1 AATGGGCCGAAAACGGGCC
79559550 AATGGGCC
1 AATGGGCC
79559558 AATGGGCCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.30, C:0.22, G:0.37, T:0.11
Consensus pattern (19 bp):
AATGGGCCGAAAACGGGCC
Found at i:79559936 original size:33 final size:32
Alignment explanation
Indices: 79559887--79559950 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
79559877 CTCGCTGCAA
* *
79559887 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
*
79559920 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
79559951 GTGACTTCGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:79573567 original size:39 final size:40
Alignment explanation
Indices: 79573464--79573648 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
79573454 TTGAATGATG
* * *
79573464 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
79573503 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
79573544 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
79573583 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
79573622 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
79573649 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:79573601 original size:79 final size:81
Alignment explanation
Indices: 79573464--79573648 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
79573454 TTGAATGATG
* *
79573464 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
79573528 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
79573543 TTCCGGGCTAAG-CCTGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
79573605 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
79573623 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79573649 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:79573670 original size:79 final size:79
Alignment explanation
Indices: 79573517--79573681 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
79573507 GGACTAAGAT
* * * **
79573517 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCTGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
79573582 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
79573596 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
79573659 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
79573675 CCGAAGG
1 CCGAAGG
79573682 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:79576089 original size:6 final size:6
Alignment explanation
Indices: 79576071--79576269 Score: 104
Period size: 6 Copynumber: 32.3 Consensus size: 6
79576061 AACAAACATT
* * *
79576071 ATCAGA A-CTAGA ATCAGA ATTAGA ATCAGA ATCAAA ATTAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * *
79576119 ATTAG- GTGACAGA ATCAGA ATCAGA ATTAGT ATCAGGTA A-CCGA ATCAAA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * *
79576169 ACCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * * *
79576220 A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-GAGA ATCAAA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
79576268 AT
1 AT
79576270 GTGAATGCAA
Statistics
Matches: 142, Mismatches: 34, Indels: 34
0.68 0.16 0.16
Matches are distributed among these distances:
5 10 0.07
6 114 0.80
7 13 0.09
8 5 0.04
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:79576135 original size:31 final size:31
Alignment explanation
Indices: 79576097--79576269 Score: 265
Period size: 31 Copynumber: 5.6 Consensus size: 31
79576087 GAATTAGAAT
* * * *
79576097 CAGAATCAAAATTAGAATCAGAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
* *
79576128 CAGAATCAGAATCAGAATTAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
* *
79576159 CCGAATCAAAACCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
79576190 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
79576221 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
79576252 GAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
79576270 GTGAATGCAA
Statistics
Matches: 129, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 129 1.00
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:79576195 original size:19 final size:19
Alignment explanation
Indices: 79576171--79576228 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
79576161 GAATCAAAAC
79576171 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
79576190 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
79576202 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
79576221 CAGAATCA
1 CAGAATCA
79576229 AAATCAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:79576492 original size:71 final size:67
Alignment explanation
Indices: 79576415--79576556 Score: 167
Period size: 71 Copynumber: 2.1 Consensus size: 67
79576405 TCACCAGATA
* * * * *
79576415 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATACA-GT---GAAGCCACCAGATTCCAGCGA
*
79576480 GGCTTC
62 GGCTAC
* * *
79576486 CAGATATTGTGACGAAGTCACCAGAATAGATATATACAGTGAGGCCACCAGATTCCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATACAGTGAAGCCACCAGATTCCAGCGAGGCT
79576551 AC
66 AC
79576553 CAGA
1 CAGA
79576557 ACGCTTCCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 28 0.45
70 2 0.03
71 32 0.52
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATACAGTGAAGCCACCAGATTCCAGCGAGGCT
AC
Found at i:79576805 original size:27 final size:27
Alignment explanation
Indices: 79576775--79576834 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
79576765 ACACCCTAGG
* *
79576775 GGTAAAATGGTAATTTTATAAATCGAA
1 GGTAAAAAGGTAATTCTATAAATCGAA
*
79576802 GGTAAAAAGGTAATTCTATAAATCGAG
1 GGTAAAAAGGTAATTCTATAAATCGAA
79576829 GGTAAA
1 GGTAAA
79576835 TGTAACGCCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.45, C:0.05, G:0.22, T:0.28
Consensus pattern (27 bp):
GGTAAAAAGGTAATTCTATAAATCGAA
Found at i:79578252 original size:93 final size:93
Alignment explanation
Indices: 79578144--79578317 Score: 287
Period size: 93 Copynumber: 1.9 Consensus size: 93
79578134 GCCCATAAGT
* *
79578144 GAACTTGGACTCAACTCAACGAGCTCAGG-CGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTTGGACTCAACTCAACGAGCTC-GGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
79578208 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
79578237 GAACTTGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTTGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
79578302 CGAGTTTGGATGCCTA
66 CGAGCTCGGATGCCTA
79578318 AATATCCCAG
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTTGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:79578307 original size:46 final size:46
Alignment explanation
Indices: 79578136--79578305 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 46
79578126 TGTAACTCGC
* * *
79578136 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCAGG-CGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACGCTAGCAT
* *
79578182 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTAGCAT
* *** * * *
79578228 ACATCTCTCGAACTTGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTAGCAT
79578275 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
79578306 TTTGGATGCC
Statistics
Matches: 101, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
45 2 0.02
46 64 0.63
47 35 0.35
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTAGCAT
Found at i:79578330 original size:46 final size:46
Alignment explanation
Indices: 79578187--79578330 Score: 125
Period size: 46 Copynumber: 3.1 Consensus size: 46
79578177 TGCATCCATA
* * *
79578187 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--AACATCCC
* * ** *
79578235 --TCGAACTTGGACTCAACTCAACGAGTTCGGACG-CT-CGCATCCATA
1 AGT-GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAAACATCC--C
* *
79578280 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAAACATCCC
79578326 AGTGA
1 AGTGA
79578331 CATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
43 4 0.05
46 36 0.48
47 31 0.41
48 4 0.05
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAAACATCCC
Found at i:79579642 original size:27 final size:27
Alignment explanation
Indices: 79579604--79580073 Score: 652
Period size: 27 Copynumber: 17.4 Consensus size: 27
79579594 GGATATTATA
*
79579604 GTAAAACAGTAATTTTGTAAATCGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
*
79579631 GTAAAATAGTAATTTTTTAAATCGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
* * * * *
79579658 GTAAAACATTAATTCTGTCAATTGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
* * *
79579685 GTAAAATAGTAATTCTATCAATCGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
* * * *
79579712 GTAAAACAGTAATTCTGTCAATTGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
*
79579739 GTAAAATAGTAATTCTGTAAATCGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
*
79579766 GTAAAATAGTAATTTTGTAAATTGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
*
79579793 GTAAAATAGTAATTCTGTAAATCGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
*
79579820 GTAAAATAGTAATTTTGTAAATTGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
*
79579847 GTAAAATAGTAATTCTGTAAATCGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
*
79579874 GTAAAATAGTAATTTTGTAAATTGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
*
79579901 GTAAAATAGTAATTCTGTAAATCGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
*
79579928 GTAAAATAGTAATTTTGTAAATTGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
* * *
79579955 GTAAAACAGTAATTTTATAAATTGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
* * *
79579982 GTAAAACAGTAATTCTATAAATCGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
**
79580009 GTAAAACGGTAATTTTGTAAATCGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
**
79580036 GTAAAACGGTAATTTTGTAAATCGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
79580063 GTAAAATAGTA
1 GTAAAATAGTA
79580074 GTTCTATAAA
Statistics
Matches: 402, Mismatches: 41, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 402 1.00
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (27 bp):
GTAAAATAGTAATTTTGTAAATCGAGG
Found at i:79580269 original size:17 final size:18
Alignment explanation
Indices: 79580249--79580294 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
79580239 AACTTATCCA
79580249 ATTGGGCCCATA-GGCCC
1 ATTGGGCCCATATGGCCC
*
79580266 ATTGGGCCCACATGGCCC
1 ATTGGGCCCATATGGCCC
* *
79580284 TTTCGGCCCAT
1 ATTGGGCCCAT
79580295 CGCGACCCGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.15, C:0.37, G:0.26, T:0.22
Consensus pattern (18 bp):
ATTGGGCCCATATGGCCC
Found at i:79584270 original size:48 final size:48
Alignment explanation
Indices: 79584215--79584310 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
79584205 TGTTGTGTCC
79584215 TTGAGTTCCAAGGTAATTGGAAAAAGTATTTACCATTCGTAGAATTTA
1 TTGAGTTCCAAGGTAATTGGAAAAAGTATTTACCATTCGTAGAATTTA
79584263 TTGAGTTCCAAGGTAATTGGAAAAAGTATTTACCATTCGTAGAATTTA
1 TTGAGTTCCAAGGTAATTGGAAAAAGTATTTACCATTCGTAGAATTTA
79584311 CCTACAACAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (48 bp):
TTGAGTTCCAAGGTAATTGGAAAAAGTATTTACCATTCGTAGAATTTA
Found at i:79590307 original size:39 final size:39
Alignment explanation
Indices: 79590249--79590358 Score: 193
Period size: 39 Copynumber: 2.8 Consensus size: 39
79590239 GATGTGTATT
*
79590249 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATC
1 CGGACTTAGGGTCCACAGGCTATGTGCTGGAATTATATC
79590288 CGGACTTAGGGTCCACAGGCTATGTGCTGGAATTATATC
1 CGGACTTAGGGTCCACAGGCTATGTGCTGGAATTATATC
* *
79590327 CGGACTTAAGGTCCACAGGCTACGTGCTGGAA
1 CGGACTTAGGGTCCACAGGCTATGTGCTGGAA
79590359 ATATGTCCAG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (39 bp):
CGGACTTAGGGTCCACAGGCTATGTGCTGGAATTATATC
Found at i:79590401 original size:78 final size:77
Alignment explanation
Indices: 79590249--79590406 Score: 167
Period size: 78 Copynumber: 2.0 Consensus size: 77
79590239 GATGTGTATT
* * * * * ** *
79590249 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCACAGGCTATGTG
1 CGGACTTAAGGTCCACAGGCTACGTGCTGGAAATATATCCAGACTTAAAGTCCACAGGCTATGAG
*
79590314 CTGGAATTATATC
66 CTAGAATTATA-C
* *
79590327 CGGACTTAAGGTCCACAGGCTACGTGCTGGAAATATGTCCAGAC-TAAAGTCCCGCAGGCT-TCG
1 CGGACTTAAGGTCCACAGGCTACGTGCTGGAAATATATCCAGACTTAAAGT-CCACAGGCTAT-G
*
79590390 AGCTAGCATTATAC
64 AGCTAGAATTATAC
79590404 CGG
1 CGG
79590407 GTTTAAATTC
Statistics
Matches: 66, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
77 9 0.14
78 57 0.86
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (77 bp):
CGGACTTAAGGTCCACAGGCTACGTGCTGGAAATATATCCAGACTTAAAGTCCACAGGCTATGAG
CTAGAATTATAC
Found at i:79591599 original size:50 final size:50
Alignment explanation
Indices: 79591397--79591600 Score: 223
Period size: 50 Copynumber: 4.1 Consensus size: 50
79591387 GGGGTGTTAC
* *
79591397 ACCAGATTATTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGT
1 ACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGT
* * * * * * *
79591447 ACTC-GATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGACTACTACGTGT
1 AC-CAGATTG-TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGT
* * ** *
79591498 ATCAGATGGTTAGGT-TAAGTGTGTAGTACTAAGTGCACGCTACTATGTGT
1 ACCAGATTGTTAGGTCGCA-TGTGTAGTACTAAGTGCAGGCTACTATGTGT
* *
79591548 ACCAGATTGTTAGGTCGTATGTGTAGTACTAAGTACAGGCTACTATGTGT
1 ACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGT
79591598 ACC
1 ACC
79591601 GAAGAGCTTC
Statistics
Matches: 124, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
50 83 0.67
51 41 0.33
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
ACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGT
Found at i:79594700 original size:43 final size:43
Alignment explanation
Indices: 79594636--79594806 Score: 236
Period size: 43 Copynumber: 4.0 Consensus size: 43
79594626 TCTTAACTCA
* * **
79594636 TTCACCGGAATT-TTGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * *
79594678 TTCACCGGCATTATAGCCTGCTAGGCCCGAGGCTCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * *
79594721 CTCACTGGCATTATAGCCTGCTAGGCCCCAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
79594764 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAATATCA
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCG-ATATCA
79594807 CATTTCGATA
Statistics
Matches: 111, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 11 0.10
43 94 0.85
44 6 0.05
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:79598103 original size:68 final size:68
Alignment explanation
Indices: 79597992--79598126 Score: 243
Period size: 68 Copynumber: 2.0 Consensus size: 68
79597982 CTTAACACAT
*
79597992 CCATATAACTAAAAATTCTAAGTTTAAACACAATACAACATTTTAGCACCATGGCCAAATACTTC
1 CCATATAACTAAAAATTCTAAGTTTAAACACAAAACAACATTTTAGCACCATGGCCAAATACTTC
79598057 ATG
66 ATG
* *
79598060 CCATATAACTAAAAATTCTAAGTTTAAACACAAAACAAGATTTTAGCACCATGGCCGAATACTTC
1 CCATATAACTAAAAATTCTAAGTTTAAACACAAAACAACATTTTAGCACCATGGCCAAATACTTC
79598125 AT
66 AT
79598127 AAAGTTGTTA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.27
Consensus pattern (68 bp):
CCATATAACTAAAAATTCTAAGTTTAAACACAAAACAACATTTTAGCACCATGGCCAAATACTTC
ATG
Found at i:79600478 original size:20 final size:18
Alignment explanation
Indices: 79600455--79600498 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
79600445 ATAGAGAGTT
*
79600455 ACACGGGCGTGTCCAGAGCC
1 ACACGGGCGTGT-AAGA-CC
*
79600475 ACACGGGTGTGTAAGACC
1 ACACGGGCGTGTAAGACC
79600493 ACACGG
1 ACACGG
79600499 CCTACCCACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.36
19 3 0.14
20 11 0.50
ACGTcount: A:0.25, C:0.30, G:0.34, T:0.11
Consensus pattern (18 bp):
ACACGGGCGTGTAAGACC
Found at i:79603073 original size:47 final size:47
Alignment explanation
Indices: 79602975--79603102 Score: 150
Period size: 47 Copynumber: 2.7 Consensus size: 47
79602965 AATCGATAAG
* ** * * * *
79602975 TACCTATACCATGGTCTGTAGCCAAATTAAGATAACTTATCCTAGAG
1 TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCTAGAA
*
79603022 TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCCTCTCT-GAA
1 TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATC-CTAGAA
* *
79603069 TACCTACACCATGGCCCATAGCCAAACCAAGGTA
1 TACCTATACCATGGCCCATAGCCAAATCAAGGTA
79603103 TTATTCTCTC
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
47 68 0.97
48 2 0.03
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (47 bp):
TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCTAGAA
Found at i:79607147 original size:64 final size:64
Alignment explanation
Indices: 79607046--79607174 Score: 240
Period size: 64 Copynumber: 2.0 Consensus size: 64
79607036 TTTAGGGATG
*
79607046 AAGATAATAGAAAAGATGATAATTTTTTTAATAATTTGTCATCTTTTATTTTTAGTGATTTTCA
1 AAGATAATAGAAAAGATGATAATTTTTTTAATAATTTGTCATCTTTTAATTTTAGTGATTTTCA
*
79607110 AAGATAATAGAAAAGATGATAATTTTTTTAATTATTTGTCATCTTTTAATTTTAGTGATTTTCA
1 AAGATAATAGAAAAGATGATAATTTTTTTAATAATTTGTCATCTTTTAATTTTAGTGATTTTCA
79607174 A
1 A
79607175 TTTAGTCCTT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.36, C:0.05, G:0.11, T:0.48
Consensus pattern (64 bp):
AAGATAATAGAAAAGATGATAATTTTTTTAATAATTTGTCATCTTTTAATTTTAGTGATTTTCA
Found at i:79609067 original size:24 final size:25
Alignment explanation
Indices: 79609040--79609089 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
79609030 TAGAAAATGA
*
79609040 AGAAAAATG-GAAGGGAA-TGAAGAG
1 AGAAAAATGAG-AGAGAAGTGAAGAG
79609064 AGAAAAATGAGAGAGAAGTGAAGAG
1 AGAAAAATGAGAGAGAAGTGAAGAG
79609089 A
1 A
79609090 TGAGAAGGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.56, C:0.00, G:0.36, T:0.08
Consensus pattern (25 bp):
AGAAAAATGAGAGAGAAGTGAAGAG
Found at i:79612060 original size:31 final size:30
Alignment explanation
Indices: 79612010--79612092 Score: 123
Period size: 31 Copynumber: 2.7 Consensus size: 30
79612000 TCAGTCTCAA
*
79612010 CATAT-ACTGGGCTAAGCCTTTTCATTATT
1 CATATCACTGGGCGAAGCCTTTTCATTATT
79612039 CATATCACTGGGTCGAAGCCTTTTCATTATT
1 CATATCACTGGG-CGAAGCCTTTTCATTATT
*
79612070 TATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGG-CGAAGCCTTT
79612093 ACTGTAAACG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
29 5 0.10
30 6 0.12
31 38 0.78
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (30 bp):
CATATCACTGGGCGAAGCCTTTTCATTATT
Found at i:79612341 original size:25 final size:25
Alignment explanation
Indices: 79612313--79612407 Score: 172
Period size: 25 Copynumber: 3.8 Consensus size: 25
79612303 CTCTTTTAAT
*
79612313 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
79612338 AACTGGGGCAAAGCCCTTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
79612363 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
79612388 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
79612408 GTACTTCCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:79612467 original size:10 final size:10
Alignment explanation
Indices: 79612454--79612492 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
79612444 ATATATGAAT
79612454 ATATCATGGC
1 ATATCATGGC
79612464 ATATCATGTGC
1 ATATCATG-GC
79612475 ATATCATGGC
1 ATATCATGGC
79612485 ATATCATG
1 ATATCATG
79612493 TACAAAACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:79612480 original size:21 final size:21
Alignment explanation
Indices: 79612454--79612493 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
79612444 ATATATGAAT
79612454 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
79612475 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
79612494 ACAAAACAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:79612560 original size:25 final size:25
Alignment explanation
Indices: 79612532--79612582 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
79612522 ATAACATATC
* *
79612532 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCAAAATGGTCATTTTCA
*
79612557 CCTAGGGGCAAAATGGTTATTTTCA
1 CCTAGGGGCAAAATGGTCATTTTCA
79612582 C
1 C
79612583 ATTATAAGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTCA
Found at i:79622605 original size:39 final size:40
Alignment explanation
Indices: 79622401--79622623 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
79622391 TTGAATGCTG
* * * * * *
79622401 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
79622441 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
79622481 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
79622521 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
79622561 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
79622600 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
79622624 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:79622643 original size:79 final size:80
Alignment explanation
Indices: 79622476--79622658 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
79622466 GTGCGAGATA
* * *
79622476 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
79622541 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
79622556 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
79622620 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
79622635 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
79622659 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:79628904 original size:50 final size:49
Alignment explanation
Indices: 79628737--79628917 Score: 188
Period size: 50 Copynumber: 3.6 Consensus size: 49
79628727 ATTGTGAATA
* * *
79628737 CACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTACCATACT-GTTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-A-TGGTTAGGT
* * * * *
79628787 CACATGTGTAGTACTAAGTGCAGGCTGCT--GTGCATACTCAATGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTG--TA-TCAATG-GTTAGGT
* *
79628838 CACGTGTGTAGTACTAAGTGCATGCTACTACGTGTATCAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-ATGGTTAGGT
79628888 CACGTGTGTAGTACTAAGTGCAGGCTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTA
79628918 TGCCTATCAG
Statistics
Matches: 107, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
48 3 0.03
49 1 0.01
50 64 0.60
51 36 0.34
53 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (49 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAATGGTTAGGT
Found at i:79628936 original size:101 final size:101
Alignment explanation
Indices: 79628737--79628920 Score: 271
Period size: 101 Copynumber: 1.8 Consensus size: 101
79628727 ATTGTGAATA
* *
79628737 CACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCACATGTGTAGTACT
1 CACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTGAAGTCACATGTGTAGTACT
* *
79628802 AAGTGCAGGCTGCTGTGCATACTCAATGACTTCGAT
66 AAGTGCAGGCTACTATGCATACTCAATGACTTCGAT
* * * * *
79628838 CACGTGTGTAGTACTAAGTGCATGCTACTACGTGTATCAGA-TGGTGAGGTCACGTGTGTAGTAC
1 CACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTGAAGTCACATGTGTAGTAC
79628902 TAAGTGCAGGCTACTATGC
65 TAAGTGCAGGCTACTATGC
79628921 CTATCAGATA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 1 0.01
101 72 0.99
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (101 bp):
CACGTGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTGAAGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCATACTCAATGACTTCGAT
Found at i:79629047 original size:27 final size:26
Alignment explanation
Indices: 79629017--79629068 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
79629007 GGGAAAATCG
79629017 ATAAAGTGGTACTATGTG-AAAGTTATT
1 ATAAAGTGG-A-TATGTGCAAAGTTATT
* *
79629044 ATAAGGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAAGTTAT
79629069 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 6 0.27
26 8 0.36
27 8 0.36
ACGTcount: A:0.37, C:0.04, G:0.23, T:0.37
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAAGTTATT
Found at i:79640397 original size:52 final size:52
Alignment explanation
Indices: 79640335--79641170 Score: 1654
Period size: 52 Copynumber: 16.1 Consensus size: 52
79640325 TGGTACAAAT
79640335 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79640387 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79640439 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79640491 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79640543 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79640595 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79640647 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79640699 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79640751 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79640803 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79640855 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79640907 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79640959 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79641011 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79641063 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
79641115 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79641167 TGAT
1 TGAT
79641171 GGGCATTTCA
Statistics
Matches: 782, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 782 1.00
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.35
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:79642857 original size:27 final size:27
Alignment explanation
Indices: 79642791--79642930 Score: 180
Period size: 27 Copynumber: 5.2 Consensus size: 27
79642781 AGGAAGCGTC
* *
79642791 CTGGTGGCTATGCCACA-ATTATCTATT
1 CTGGTGGCTCTGCCACATA-TATCTGTT
79642818 -TGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
* * *
79642844 CTGGTGGCTATGCCACGAT-TGTCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGTT
79642871 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
79642898 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTGT-T
79642925 CTGGTG
1 CTGGTG
79642931 ACTTCGTGAA
Statistics
Matches: 100, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
26 32 0.32
27 66 0.66
28 2 0.02
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGTT
Found at i:79642887 original size:54 final size:53
Alignment explanation
Indices: 79642791--79642930 Score: 210
Period size: 54 Copynumber: 2.6 Consensus size: 53
79642781 AGGAAGCGTC
*
79642791 CTGGTGGCTATGCCACAATTATCT-ATTTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
79642844 CTGGTGGCTATGCCACGATTGTCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
79642898 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
79642931 ACTTCGTGAA
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 28 0.35
54 51 0.65
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:79643067 original size:26 final size:27
Alignment explanation
Indices: 79643028--79643113 Score: 106
Period size: 26 Copynumber: 3.2 Consensus size: 27
79643018 AGGAAGCGTC
*
79643028 CTGGTGGCTATGCCACAATTATCTATT
1 CTGGTGGCTCTGCCACAATTATCTATT
*
79643055 -TGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTATT
*
79643081 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTAT-T
79643108 CTGGTG
1 CTGGTG
79643114 ACTTCGTCAC
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
25 2 0.04
26 28 0.53
27 22 0.42
28 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTATT
Found at i:79643093 original size:27 final size:26
Alignment explanation
Indices: 79643028--79643131 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 26
79643018 AGGAAGCGTC
* *
79643028 CTGGTGGCTATGCCACAATTATCTATT
1 CTGGTGGCTCTGCCACAA-TATCTGTT
79643055 -TGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGTT
79643081 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGT-T
* *
79643108 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
79643132 GCAGCCTCGC
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
26 31 0.45
27 38 0.55
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGTT
Found at i:79643723 original size:16 final size:16
Alignment explanation
Indices: 79643702--79643733 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
79643692 AATGGGTTTA
*
79643702 CAAAAACAAAGATTTT
1 CAAAAACAAAAATTTT
79643718 CAAAAACAAAAATTTT
1 CAAAAACAAAAATTTT
79643734 ATAAAGAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.12, G:0.03, T:0.25
Consensus pattern (16 bp):
CAAAAACAAAAATTTT
Found at i:79646520 original size:23 final size:22
Alignment explanation
Indices: 79646490--79646557 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 22
79646480 AGGGAAGTGT
79646490 CTGACATGCCAGTAAGTGAAAG
1 CTGACATGCCAGTAAGTGAAAG
*
79646512 CTG--A-G-CATGT-AGGGAAATG
1 CTGACATGCCA-GTAAGTGAAA-G
*
79646531 TCTGACATGCCAGCAAGTGAAAG
1 -CTGACATGCCAGTAAGTGAAAG
79646554 CTGA
1 CTGA
79646558 GCATCAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 16
0.65 0.06 0.30
Matches are distributed among these distances:
18 8 0.23
19 4 0.11
20 4 0.11
22 8 0.23
23 3 0.09
24 8 0.23
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (22 bp):
CTGACATGCCAGTAAGTGAAAG
Found at i:79646536 original size:42 final size:42
Alignment explanation
Indices: 79646477--79646561 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
79646467 TAACAGAGTT
* *
79646477 TGTAGGGAAGTGTCTGACATGCCAGTAAGTGAAAGCTGAGCA
1 TGTAGGGAAATGTCTGACATGCCAGCAAGTGAAAGCTGAGCA
79646519 TGTAGGGAAATGTCTGACATGCCAGCAAGTGAAAGCTGAGCA
1 TGTAGGGAAATGTCTGACATGCCAGCAAGTGAAAGCTGAGCA
79646561 T
1 T
79646562 CAATTACCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (42 bp):
TGTAGGGAAATGTCTGACATGCCAGCAAGTGAAAGCTGAGCA
Found at i:79648108 original size:52 final size:52
Alignment explanation
Indices: 79648030--79648865 Score: 1654
Period size: 52 Copynumber: 16.1 Consensus size: 52
79648020 TGGTACAAAT
79648030 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648082 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648134 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648186 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648238 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648290 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648342 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648394 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648446 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648498 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648550 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648602 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648654 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648706 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648758 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
79648810 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
79648862 TGAT
1 TGAT
79648866 GGGCATTTCA
Statistics
Matches: 782, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 782 1.00
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.35
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:79650527 original size:27 final size:27
Alignment explanation
Indices: 79650485--79650598 Score: 115
Period size: 27 Copynumber: 4.2 Consensus size: 27
79650475 AGGAAGCGTC
79650485 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* * * *
79650512 CTGGTGGCTCTACCAC-ATATATTTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
* *
79650539 CTGGTGGTTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* * *
79650566 CCGGTGGCTCTGCCACAA-TATCTGTTT
1 CTGGTGGCTATGCCACAATTATCTG-AT
79650593 CTGGTG
1 CTGGTG
79650599 ACTTCGTCAC
Statistics
Matches: 69, Mismatches: 15, Indels: 6
0.77 0.17 0.07
Matches are distributed among these distances:
26 8 0.12
27 59 0.86
28 2 0.03
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:79650572 original size:54 final size:54
Alignment explanation
Indices: 79650485--79650598 Score: 167
Period size: 54 Copynumber: 2.1 Consensus size: 54
79650475 AGGAAGCGTC
* *
79650485 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATTTG-TT
1 CTGGTGGCTATGCCACAATTATCTGATCCGGTGGCTCTACCACA-ATATCTGTTT
* * *
79650539 CTGGTGGTTATGCCACGATTATCTGATCCGGTGGCTCTGCCACAATATCTGTTT
1 CTGGTGGCTATGCCACAATTATCTGATCCGGTGGCTCTACCACAATATCTGTTT
79650593 CTGGTG
1 CTGGTG
79650599 ACTTCGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 6 0.11
54 48 0.89
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCCGGTGGCTCTACCACAATATCTGTTT
Found at i:79653052 original size:29 final size:28
Alignment explanation
Indices: 79653000--79653054 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
79652990 AACAGATGAG
*
79653000 AGAAGGAAAAAAAAGAATAGAAAATAGA
1 AGAAGGAAAAAAAAGAATACAAAATAGA
*
79653028 AGAAGGAAAAAAAATGAATCCAAAATA
1 AGAAGGAAAAAAAA-GAATACAAAATA
79653055 TATGGCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 14 0.58
29 10 0.42
ACGTcount: A:0.69, C:0.04, G:0.18, T:0.09
Consensus pattern (28 bp):
AGAAGGAAAAAAAAGAATACAAAATAGA
Found at i:79653976 original size:12 final size:12
Alignment explanation
Indices: 79653961--79653985 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79653951 TATTTTCCTA
79653961 TATAATAATAAT
1 TATAATAATAAT
79653973 TATAATAATAAT
1 TATAATAATAAT
79653985 T
1 T
79653986 TTATAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TATAATAATAAT
Found at i:79655953 original size:56 final size:54
Alignment explanation
Indices: 79655866--79656014 Score: 158
Period size: 56 Copynumber: 2.7 Consensus size: 54
79655856 CATGATATAT
* * * *
79655866 GCTAGGTCCAGGAGCTTGTGTAGCCCCGTTGAGAGGCAT-GTAATTATGTGGTACAC
1 GCTAGGTTCAGGAGCTTATGTAGCCCTGTTGAGAGGCATGGT-A--ATGTGATACAC
* * *
79655922 GCTAGGTTCGGGAGCTTATGTAGCCCTGTTGAGAGGCATGGTAATGTGATGCAT
1 GCTAGGTTCAGGAGCTTATGTAGCCCTGTTGAGAGGCATGGTAATGTGATACAC
*
79655976 GCTAGG-TCTGGATGCTCATATGTAGCCCTGTTGAGAGGC
1 GCTAGGTTCAGGA-GCT--TATGTAGCCCTGTTGAGAGGC
79656015 GTGCTATGTC
Statistics
Matches: 81, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
53 5 0.06
54 17 0.21
56 57 0.70
57 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.28
Consensus pattern (54 bp):
GCTAGGTTCAGGAGCTTATGTAGCCCTGTTGAGAGGCATGGTAATGTGATACAC
Found at i:79667582 original size:37 final size:37
Alignment explanation
Indices: 79667532--79667610 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
79667522 TTATTACGAA
* *
79667532 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
79667569 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
79667606 GTCTT
1 GTCTT
79667611 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:79667807 original size:47 final size:47
Alignment explanation
Indices: 79667729--79668069 Score: 583
Period size: 47 Copynumber: 7.2 Consensus size: 47
79667719 CCCTTCGGGA
* * * * * *
79667729 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79667776 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79667823 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79667870 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79667917 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79667964 CTTATCACATATACATACCCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
79668013 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79668060 CTTATCACAT
1 CTTATCACAT
79668070 TTCTCATTTT
Statistics
Matches: 280, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 234 0.84
49 46 0.16
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79681025 original size:47 final size:47
Alignment explanation
Indices: 79680909--79681086 Score: 157
Period size: 47 Copynumber: 3.8 Consensus size: 47
79680899 ATAATCTCAC
*
79680909 CCATAATGAACTCGGAACGCAACTCAACGAGCTCAGG-TG-TTCACAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTC-GGATGCTTCACAT
* * * *
79680955 TCATAATTAACTCGGAACACAACTCAACGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCACAT
* * * * *
79681001 CCATAGGTGAACTCGGAACGCAACTCAATGAGTTCAGATGCCTCATAAT
1 CCATA-ATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCA-CAT
* * * * * *
79681050 TC-TCACGAACTAGGACCACAACTCAACGAGTTCGGAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGAT
79681087 CTCCATTTCC
Statistics
Matches: 104, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
45 2 0.02
46 39 0.38
47 59 0.57
48 1 0.01
49 3 0.03
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (47 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCACAT
Found at i:79681086 original size:94 final size:93
Alignment explanation
Indices: 79680915--79681086 Score: 229
Period size: 94 Copynumber: 1.8 Consensus size: 93
79680905 TCACCCATAA
* * * ** *
79680915 TGAACTCGGAACGCAACTCAACGAGCTCAGGTGTTCACATTCATAATTAACTCGGAACACAACTC
1 TGAACTCGGAACGCAACTCAACGAGCTCAGATGCTCAAATTCATAACGAACTAGGAACACAACTC
79680980 AACGAGTTCGGATGCTTGCATCCATAGG
66 AACGAGTTCGGATGCTTGCATCCATAGG
* * * *
79681008 TGAACTCGGAACGCAACTCAATGAGTTCAGATGCCTCATAATTC-TCACGAACTAGGACCACAAC
1 TGAACTCGGAACGCAACTCAACGAGCTCAGATG-CTCA-AATTCATAACGAACTAGGAACACAAC
79681072 TCAACGAGTTCGGAT
64 TCAACGAGTTCGGAT
79681087 CTCCATTTCC
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
93 30 0.45
94 33 0.49
95 4 0.06
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (93 bp):
TGAACTCGGAACGCAACTCAACGAGCTCAGATGCTCAAATTCATAACGAACTAGGAACACAACTC
AACGAGTTCGGATGCTTGCATCCATAGG
Found at i:79682561 original size:9 final size:9
Alignment explanation
Indices: 79682539--79682630 Score: 53
Period size: 9 Copynumber: 9.9 Consensus size: 9
79682529 CTAATTAATT
79682539 TAATAATATGG
1 TAATAATA--G
79682550 TAATAATAG
1 TAATAATAG
* *
79682559 TAATAGTGG
1 TAATAATAG
*
79682568 TAATAATAC
1 TAATAATAG
*
79682577 TAATAATAT
1 TAATAATAG
*
79682586 TAATAACA-
1 TAATAATAG
*
79682594 -AATTGAAATAA
1 TAA-T--AATAG
*
79682605 CAATAATAG
1 TAATAATAG
*
79682614 TAATAATAC
1 TAATAATAG
79682623 TAATAATA
1 TAATAATA
79682631 TTTACCATTT
Statistics
Matches: 65, Mismatches: 11, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
7 2 0.03
8 1 0.02
9 48 0.74
10 3 0.05
11 9 0.14
12 2 0.03
ACGTcount: A:0.54, C:0.04, G:0.09, T:0.33
Consensus pattern (9 bp):
TAATAATAG
Found at i:79682570 original size:18 final size:17
Alignment explanation
Indices: 79682542--79682581 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
79682532 ATTAATTTAA
*
79682542 TAATATGGTAATAATAG
1 TAATATGGTAATAATAC
79682559 TAATAGTGGTAATAATAC
1 TAATA-TGGTAATAATAC
79682577 TAATA
1 TAATA
79682582 ATATTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.47, C:0.03, G:0.15, T:0.35
Consensus pattern (17 bp):
TAATATGGTAATAATAC
Found at i:79682989 original size:9 final size:9
Alignment explanation
Indices: 79682967--79683019 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
79682957 CTAATTAATT
79682967 TAATAATATGG
1 TAATAATA--G
79682978 TAATAATAG
1 TAATAATAG
* *
79682987 TAATAGTGG
1 TAATAATAG
*
79682996 TAATAATAC
1 TAATAATAG
*
79683005 TAATAATAT
1 TAATAATAG
79683014 TAATAA
1 TAATAA
79683020 CAAATTGAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
9 28 0.78
11 8 0.22
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (9 bp):
TAATAATAG
Found at i:79682998 original size:18 final size:17
Alignment explanation
Indices: 79682970--79683009 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
79682960 ATTAATTTAA
*
79682970 TAATATGGTAATAATAG
1 TAATATGGTAATAATAC
79682987 TAATAGTGGTAATAATAC
1 TAATA-TGGTAATAATAC
79683005 TAATA
1 TAATA
79683010 ATATTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.47, C:0.03, G:0.15, T:0.35
Consensus pattern (17 bp):
TAATATGGTAATAATAC
Found at i:79682998 original size:428 final size:428
Alignment explanation
Indices: 79682201--79683048 Score: 1696
Period size: 428 Copynumber: 2.0 Consensus size: 428
79682191 CAAAATAGGC
79682201 TATTTACCATTTAAGGACCCCCATTTTCAAAAACCATTACTCACAAGTACTTAGTACCTTTGTAA
1 TATTTACCATTTAAGGACCCCCATTTTCAAAAACCATTACTCACAAGTACTTAGTACCTTTGTAA
79682266 ACTAGAATACACATTTTGCAACTTTTACAATTTAGTCCTTTTGACTAAATTGAGTGCCCGAACGT
66 ACTAGAATACACATTTTGCAACTTTTACAATTTAGTCCTTTTGACTAAATTGAGTGCCCGAACGT
79682331 CAAAATTTTTGAACGAGGTTTTTGCAAAATTATTCCATAAAATCGTAGACCATAAAAACATAATA
131 CAAAATTTTTGAACGAGGTTTTTGCAAAATTATTCCATAAAATCGTAGACCATAAAAACATAATA
79682396 AAAATAAAATTTTCTTCATCGGATTTGTGGCCCCAAAACCACTGTTCCAACTAGGCCCAAAATCG
196 AAAATAAAATTTTCTTCATCGGATTTGTGGCCCCAAAACCACTGTTCCAACTAGGCCCAAAATCG
79682461 GGATATTACAGAATTTATATATAAAAATAATAGGTAAATAAACAAACGAATAAATACCAAGTATT
261 GGATATTACAGAATTTATATATAAAAATAATAGGTAAATAAACAAACGAATAAATACCAAGTATT
79682526 TAGCTAATTAATTTAATAATATGGTAATAATAGTAATAGTGGTAATAATACTAATAATATTAATA
326 TAGCTAATTAATTTAATAATATGGTAATAATAGTAATAGTGGTAATAATACTAATAATATTAATA
79682591 ACAAATTGAAATAACAATAATAGTAATAATACTAATAA
391 ACAAATTGAAATAACAATAATAGTAATAATACTAATAA
79682629 TATTTACCATTTAAGGACCCCCATTTTCAAAAACCATTACTCACAAGTACTTAGTACCTTTGTAA
1 TATTTACCATTTAAGGACCCCCATTTTCAAAAACCATTACTCACAAGTACTTAGTACCTTTGTAA
79682694 ACTAGAATACACATTTTGCAACTTTTACAATTTAGTCCTTTTGACTAAATTGAGTGCCCGAACGT
66 ACTAGAATACACATTTTGCAACTTTTACAATTTAGTCCTTTTGACTAAATTGAGTGCCCGAACGT
79682759 CAAAATTTTTGAACGAGGTTTTTGCAAAATTATTCCATAAAATCGTAGACCATAAAAACATAATA
131 CAAAATTTTTGAACGAGGTTTTTGCAAAATTATTCCATAAAATCGTAGACCATAAAAACATAATA
79682824 AAAATAAAATTTTCTTCATCGGATTTGTGGCCCCAAAACCACTGTTCCAACTAGGCCCAAAATCG
196 AAAATAAAATTTTCTTCATCGGATTTGTGGCCCCAAAACCACTGTTCCAACTAGGCCCAAAATCG
79682889 GGATATTACAGAATTTATATATAAAAATAATAGGTAAATAAACAAACGAATAAATACCAAGTATT
261 GGATATTACAGAATTTATATATAAAAATAATAGGTAAATAAACAAACGAATAAATACCAAGTATT
79682954 TAGCTAATTAATTTAATAATATGGTAATAATAGTAATAGTGGTAATAATACTAATAATATTAATA
326 TAGCTAATTAATTTAATAATATGGTAATAATAGTAATAGTGGTAATAATACTAATAATATTAATA
79683019 ACAAATTGAAATAACAATAATAGTAATAAT
391 ACAAATTGAAATAACAATAATAGTAATAAT
79683049 GGAAATAATA
Statistics
Matches: 420, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
428 420 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (428 bp):
TATTTACCATTTAAGGACCCCCATTTTCAAAAACCATTACTCACAAGTACTTAGTACCTTTGTAA
ACTAGAATACACATTTTGCAACTTTTACAATTTAGTCCTTTTGACTAAATTGAGTGCCCGAACGT
CAAAATTTTTGAACGAGGTTTTTGCAAAATTATTCCATAAAATCGTAGACCATAAAAACATAATA
AAAATAAAATTTTCTTCATCGGATTTGTGGCCCCAAAACCACTGTTCCAACTAGGCCCAAAATCG
GGATATTACAGAATTTATATATAAAAATAATAGGTAAATAAACAAACGAATAAATACCAAGTATT
TAGCTAATTAATTTAATAATATGGTAATAATAGTAATAGTGGTAATAATACTAATAATATTAATA
ACAAATTGAAATAACAATAATAGTAATAATACTAATAA
Found at i:79685180 original size:3 final size:3
Alignment explanation
Indices: 79685172--79685203 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
79685162 CATTTAACCC
79685172 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
79685204 ACAACTAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:79686068 original size:54 final size:53
Alignment explanation
Indices: 79686009--79686111 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 53
79685999 TAATGCCTTT
*
79686009 AAAGAACTAAATCAAATTCATAAATCTATGATTATCTTCCTT-ATGGAAACATTA
1 AAAGAACTAAATCAAATTAATAAATCTATGATTATC-T-CTTCATGGAAACATTA
** * *
79686063 AAAGAACTAAATTTAATTAATAAGTTTATGATTATCTCTTCATGGAAAC
1 AAAGAACTAAATCAAATTAATAAATCTATGATTATCTCTTCATGGAAAC
79686112 CAAACTGAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
52 3 0.07
53 9 0.21
54 31 0.72
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.35
Consensus pattern (53 bp):
AAAGAACTAAATCAAATTAATAAATCTATGATTATCTCTTCATGGAAACATTA
Found at i:79689592 original size:47 final size:47
Alignment explanation
Indices: 79689523--79689742 Score: 220
Period size: 47 Copynumber: 4.7 Consensus size: 47
79689513 TTATAATGCT
* *
79689523 GATGCCATGTCCCAAACATGGTCTTACACT-AGCTCATACGTCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTCATACTTCAAGTC
* *
79689570 GATGCCATGTCCCAGACATGGTCTTACACTGACT-TTAACATATC-CGTGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCAT-AC-T-TCAAGT-C
* ** *
79689619 TGATGCCATGTCCCAGACATGGTCTTACACTGACACAT-CTTGTAGCC
1 -GATGCCATGTCCCAGACATGGTCTTACACTGACTCATACTTCAAGTC
* **
79689666 GATG-CATGTCCCAGACAT-GTCTTACACT-AGCTCTTGTTTCAATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTCATACTTCAA-GTC
79689712 GATGCCATGTCCCAGACATGGTCTTACACTG
1 GATGCCATGTCCCAGACATGGTCTTACACTG
79689743 GTCTCGTAAT
Statistics
Matches: 144, Mismatches: 15, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
43 1 0.01
44 13 0.09
45 17 0.12
46 11 0.08
47 49 0.34
48 15 0.10
49 4 0.03
50 33 0.23
51 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCATACTTCAAGTC
Found at i:79691036 original size:44 final size:44
Alignment explanation
Indices: 79690973--79691060 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
79690963 CACTATTCTG
79690973 ACTAAGCCCAAAATCAGGTTGTTACAATCTTTATTTTGTGTTTT
1 ACTAAGCCCAAAATCAGGTTGTTACAATCTTTATTTTGTGTTTT
79691017 ACTAAGCCCAAAATCAGGTTGTTACAATCTTTATTTTGTGTTTT
1 ACTAAGCCCAAAATCAGGTTGTTACAATCTTTATTTTGTGTTTT
79691061 CTGTCTTAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (44 bp):
ACTAAGCCCAAAATCAGGTTGTTACAATCTTTATTTTGTGTTTT
Found at i:79695825 original size:11 final size:11
Alignment explanation
Indices: 79695811--79695836 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
79695801 TGAAATGTCT
79695811 TAAAATGCCAC
1 TAAAATGCCAC
79695822 TAAAATGCCAC
1 TAAAATGCCAC
79695833 TAAA
1 TAAA
79695837 CGTAAGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.23, G:0.08, T:0.19
Consensus pattern (11 bp):
TAAAATGCCAC
Found at i:79696837 original size:14 final size:14
Alignment explanation
Indices: 79696803--79696829 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
79696793 AACAGATTTA
79696803 ACTATACTAAAATG
1 ACTATACTAAAATG
79696817 ACTATACTAAAAT
1 ACTATACTAAAAT
79696830 TATCATACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.04, T:0.30
Consensus pattern (14 bp):
ACTATACTAAAATG
Found at i:79700837 original size:48 final size:48
Alignment explanation
Indices: 79700781--79701096 Score: 284
Period size: 48 Copynumber: 6.6 Consensus size: 48
79700771 GATGATATAT
* * *
79700781 GTGTAAGACCATGTTTGGAACATGGCATCAGCAATGTTATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCAATGATATGAGAGCCA
* * * * * * *
79700829 GTGTAAGACTATGT-TCAGAACATGACATC-GAAAATGTTATAAGAGCCA
1 GTGTAAGACCATGTCT-GGGACATGGCATCAG-CAATGATATGAGAGCCA
* * *
79700877 GTGTAAGACCATGTTTGGAACATGGCATC-GACAATGTTATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAG-CAATGATATGAGAGCCA
* ** * * * *
79700925 GAGTAAGACCATGTCTGGGACATGGCATGGGCATTGAGACGAGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCAATGATATGAGAGCCA
* * * *
79700973 GTGTAAGACCATGTCTGGGACATGGCAACAGC-CTCGACAT-TGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCAAT-GATATGAGAGCCA
* * * * *
79701020 GTGTAAGACCATGTCTGGGACATGGCATTAGC-CTCGACATGTGAGACA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCAAT-GATATGAGAGCCA
79701068 GTGTAAGACCATGTCTGGGACATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
79701097 GATAATTTAC
Statistics
Matches: 230, Mismatches: 32, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
47 46 0.20
48 182 0.79
49 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAGCAATGATATGAGAGCCA
Found at i:79701044 original size:95 final size:95
Alignment explanation
Indices: 79700919--79701094 Score: 264
Period size: 95 Copynumber: 1.9 Consensus size: 95
79700909 AATGTTATGA
* * *
79700919 GAGCCAGAGTAAGACCATGTCTGGGACATGGCATGGGCATTGAGACGAGAG-CTAGTGTAAGACC
1 GAGCCAGAGTAAGACCATGTCTGGGACATGGCATGAGCATCGACACGAGAGAC-AGTGTAAGACC
79700983 ATGTCTGGGACATGGCAACAGCCTCGACATT
65 ATGTCTGGGACATGGCAACAGCCTCGACATT
* * * * *
79701014 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTAGCCTCGACATGTGAGACAGTGTAAGACCA
1 GAGCCAGAGTAAGACCATGTCTGGGACATGGCATGAGCATCGACACGAGAGACAGTGTAAGACCA
79701079 TGTCTGGGACATGGCA
66 TGTCTGGGACATGGCA
79701095 TCGATAATTT
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
95 71 0.99
96 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.31, T:0.20
Consensus pattern (95 bp):
GAGCCAGAGTAAGACCATGTCTGGGACATGGCATGAGCATCGACACGAGAGACAGTGTAAGACCA
TGTCTGGGACATGGCAACAGCCTCGACATT
Found at i:79702102 original size:40 final size:40
Alignment explanation
Indices: 79702053--79702260 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
79702043 CAGAATTTAA
* *
79702053 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
79702093 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
79702133 CCGGATTTAGTAACTCGCTCCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
79702172 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
79702212 CCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
79702253 CCGGATAT
1 CCGGATAT
79702261 CATTCGAATA
Statistics
Matches: 144, Mismatches: 17, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.22
40 79 0.55
41 28 0.19
42 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:79702185 original size:79 final size:79
Alignment explanation
Indices: 79702049--79702257 Score: 255
Period size: 79 Copynumber: 2.6 Consensus size: 79
79702039 CCTTCAGAAT
* *
79702049 TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAC
1 TTAACCGGATATAG-TACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC
79702113 AAATGCCTTCGGGA-C
65 AAATGCCTTC-GGATC
* *
79702128 TTAACCCGGATTTAGTAACTCGCTCCAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
1 TTAA-CCGGATATAGT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
79702191 CAAATGCCTTCGGATC
64 CAAATGCCTTCGGATC
* * * *
79702207 TTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 TTA-ACCGGATATAGT-AC-TCGCTCAAATGCCTTCGGGACTTAGCCCGGA
79702258 TATCATTCGA
Statistics
Matches: 112, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 53 0.47
80 45 0.40
81 11 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
TTAACCGGATATAGTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACA
AATGCCTTCGGATC
Found at i:79708140 original size:37 final size:37
Alignment explanation
Indices: 79708090--79708168 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
79708080 TTATTACGAA
* *
79708090 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
79708127 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
79708164 GTCTT
1 GTCTT
79708169 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:79708397 original size:47 final size:47
Alignment explanation
Indices: 79708286--79709119 Score: 1596
Period size: 47 Copynumber: 17.7 Consensus size: 47
79708276 GCCCTTCGGG
* *
79708286 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTGTCAC--ATATATAC
*
79708336 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
* *
79708383 ACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79708430 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79708477 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79708524 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79708571 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79708618 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79708665 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79708712 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79708759 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79708806 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79708853 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79708900 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79708947 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79708994 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79709041 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
79709088 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
79709120 ATACTATCAT
Statistics
Matches: 780, Mismatches: 4, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
47 742 0.95
49 34 0.04
50 4 0.01
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATATAC
Found at i:79715177 original size:79 final size:78
Alignment explanation
Indices: 79715052--79715260 Score: 235
Period size: 79 Copynumber: 2.6 Consensus size: 78
79715042 CCTTCAGAAT
* * *
79715052 TTAACCGGATATAGCTACTCACTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACAC
1 TTAACCGGATATAG-TACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCACAC
79715116 AAATGCCTTCGGGA-C
64 AAATGCCTTC-GGATC
* * *
79715131 TTAACCCGGATTTAGTAACTCGCTCCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCAC
1 TTAA-CCGGATATAGT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACAC
79715195 AAATGCCTTCGGATC
64 AAATGCCTTCGGATC
* * * *
79715210 TTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 TTA-ACCGGATATAGT-AC-TCGCTCAAATGCCTTCGGGACTTAGCCCGGA
79715261 TATCATTCGA
Statistics
Matches: 110, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.03
79 52 0.47
80 44 0.40
81 11 0.10
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
TTAACCGGATATAGTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAA
ATGCCTTCGGATC
Found at i:79715189 original size:39 final size:41
Alignment explanation
Indices: 79715075--79715260 Score: 213
Period size: 40 Copynumber: 4.6 Consensus size: 41
79715065 GCTACTCACT
* * *
79715075 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* * *
79715115 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCT
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
*
79715155 CCAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
* * *
79715194 CAAATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATATAGTAAC-TCGCA
*
79715235 CAAAAGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79715261 TATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 64 0.52
41 23 0.19
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
Found at i:79721519 original size:27 final size:27
Alignment explanation
Indices: 79721481--79721535 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
79721471 CTTTCCATCC
79721481 GCAAACCAACGGTCAGTTGGAAAGAGT
1 GCAAACCAACGGTCAGTTGGAAAGAGT
*
79721508 GCAAACCAACGGTCAGTTGGTAAGAGT
1 GCAAACCAACGGTCAGTTGGAAAGAGT
79721535 G
1 G
79721536 ATTCAGATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.35, C:0.18, G:0.31, T:0.16
Consensus pattern (27 bp):
GCAAACCAACGGTCAGTTGGAAAGAGT
Found at i:79723520 original size:45 final size:45
Alignment explanation
Indices: 79723456--79723548 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
79723446 AATGTGCTAA
79723456 ATTCCTGGTTGAACCTAGGAATGGATTGGATATCCATGCCATTAC
1 ATTCCTGGTTGAACCTAGGAATGGATTGGATATCCATGCCATTAC
79723501 ATTCCTGGTTGAACCTAGGAATGGATTGGATATCCATGCCATTAC
1 ATTCCTGGTTGAACCTAGGAATGGATTGGATATCCATGCCATTAC
79723546 ATT
1 ATT
79723549 TGGATGATAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (45 bp):
ATTCCTGGTTGAACCTAGGAATGGATTGGATATCCATGCCATTAC
Found at i:79723637 original size:48 final size:48
Alignment explanation
Indices: 79723566--79723932 Score: 432
Period size: 48 Copynumber: 7.6 Consensus size: 48
79723556 TATGTGTGCT
* *
79723566 AGTGTAAGACCATGTTTGGAACATGGCACCAGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* *
79723614 AGTGTAAGACTATGTTTGGAACATGGCATCGGCAATGCTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* ** * **
79723662 AGTGTAAGACTATGTTCAGAACATGACATCGAAAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* *
79723710 AGTGTAAAACCATGTTTGGAACATGGCATCTGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
*
79723758 AGTGTAAGTCCATGTTTGGAACATGGCAGT-GGCAATGTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCA-TCGGCAATGTTATGAGAGCC
* * * * * ** * *
79723806 AGAGTAAGACCATGTCTGGGACATGGCATGGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
* * * ** *
79723854 AGTGTAAGACCATGTTTGGGACATGGCATCAGC-CTCGACATGTGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAAT-GTTATGAGAGCC
* *
79723902 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTTTGGAACATGGCATCG
79723933 ATAATTTACC
Statistics
Matches: 275, Mismatches: 41, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
47 2 0.01
48 272 0.99
49 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGAGCC
Found at i:79729589 original size:40 final size:40
Alignment explanation
Indices: 79729543--79729727 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
79729533 CTTGCACAAG
* * *
79729543 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
79729583 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
79729623 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
79729663 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
79729704 GCCTTCGGGACTTAGGCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
79729728 CATTCGAATA
Statistics
Matches: 123, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 93 0.76
41 29 0.24
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:79734664 original size:49 final size:51
Alignment explanation
Indices: 79734592--79734702 Score: 190
Period size: 49 Copynumber: 2.2 Consensus size: 51
79734582 ACTAGTGACT
79734592 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAAGATAGCTTTGGTCA
*
79734641 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AAGATAGCTTTGGTCA
79734693 CAAGTGTGGT
1 CAAGTGTGGT
79734703 GTGAAGGCCA
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
49 34 0.59
51 7 0.12
52 17 0.29
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAAGATAGCTTTGGTCA
Found at i:79734743 original size:47 final size:47
Alignment explanation
Indices: 79734655--79734749 Score: 113
Period size: 47 Copynumber: 2.0 Consensus size: 47
79734645 TGTGGTACTA
* * ** *
79734655 TGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCACAAGTGTGG
1 TGTGAAGGCCACTTTGTAAAAAAAGATAGCTTTACTCACAAGGGTGG
79734702 TGTGAAGGCCACTTTGTAAAAAAATG-TAGCTTTAACT-ACAAGGGTGG
1 TGTGAAGGCCACTTTGTAAAAAAA-GATAGCTTT-ACTCACAAGGGTGG
79734749 T
1 T
79734750 ACTATGGGCA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
47 39 0.95
48 2 0.05
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (47 bp):
TGTGAAGGCCACTTTGTAAAAAAAGATAGCTTTACTCACAAGGGTGG
Found at i:79738801 original size:26 final size:27
Alignment explanation
Indices: 79738767--79738830 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
79738757 AGCATGGCTG
79738767 CCAGAACAGATAA-TGT-GACAGAGTCA
1 CCAGAACAGATAATTGTCG-CAGAGTCA
*
79738793 CCATAACAGATAATTGTCGCAGAGTCA
1 CCAGAACAGATAATTGTCGCAGAGTCA
79738820 CCAGAACAGAT
1 CCAGAACAGAT
79738831 TTATGTGGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 12 0.35
27 21 0.62
28 1 0.03
ACGTcount: A:0.41, C:0.22, G:0.20, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTCGCAGAGTCA
Found at i:79740339 original size:24 final size:24
Alignment explanation
Indices: 79740311--79740363 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
79740301 CCAACACCGT
*
79740311 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCCAAATCC
* *
79740335 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTAATCAGCTCCCAAATCC
79740359 TCTCC
1 TCTCC
79740364 TGACAGCCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.21, C:0.43, G:0.04, T:0.32
Consensus pattern (24 bp):
TCTCCCTAATCAGCTCCCAAATCC
Found at i:79749733 original size:93 final size:93
Alignment explanation
Indices: 79749574--79750450 Score: 1745
Period size: 93 Copynumber: 9.4 Consensus size: 93
79749564 TGTAACCCGC
79749574 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
79749639 TCAACTCAACGAGTTCGGACATTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
79749667 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
79749732 TCAACTCAACGAGTTCGGACATTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
79749760 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
79749825 TCAACTCAACGAGTTCGGACATTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
79749853 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
79749918 TCAACTCAACGAGTTCGGACATTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
79749946 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
79750011 TCAACTCAACGAGTTCGGACATTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
79750039 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
79750104 TCAACTCAACGAGTTCGGACATTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
79750132 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
79750197 TCAACTCAACGAGTTCGGACATTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
79750225 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
79750290 TCAACTCAACGAGTTCGGACATTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
79750318 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
79750383 TCAACTCAACGAGTTCGGACATTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
*
79750411 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC
79750451 TCAACCATCC
Statistics
Matches: 783, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 783 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCGGAC
TCAACTCAACGAGTTCGGACATTCGCAT
Found at i:79763196 original size:28 final size:28
Alignment explanation
Indices: 79763150--79763216 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
79763140 TGACTGTGGG
79763150 TGTGATTGGGCCTAATGGGCCATATGAA
1 TGTGATTGGGCCTAATGGGCCATATGAA
* **
79763178 TGTGATTGGGGCTGGTGGGCCATATGAA
1 TGTGATTGGGCCTAATGGGCCATATGAA
*
79763206 TGAGATTGGGC
1 TGTGATTGGGC
79763217 TTAAAGGGGC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.21, C:0.12, G:0.39, T:0.28
Consensus pattern (28 bp):
TGTGATTGGGCCTAATGGGCCATATGAA
Found at i:79763708 original size:44 final size:44
Alignment explanation
Indices: 79763645--79763742 Score: 133
Period size: 44 Copynumber: 2.2 Consensus size: 44
79763635 TATTCTGTTT
* * *
79763645 AGGATACATATAGGTTGGGAATTATGGAACGTAGGAAGTATACG
1 AGGATGCATATAGGTTGGGAATTATGGAACGGAGGAAGAATACG
* * *
79763689 AGGATGCATATGGGTTGGGATTTATGGAACGGAGGAAGAATATG
1 AGGATGCATATAGGTTGGGAATTATGGAACGGAGGAAGAATACG
79763733 AGGATCGCAT
1 AGGAT-GCAT
79763743 GGTTATTTGA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 43 0.91
45 4 0.09
ACGTcount: A:0.34, C:0.07, G:0.35, T:0.24
Consensus pattern (44 bp):
AGGATGCATATAGGTTGGGAATTATGGAACGGAGGAAGAATACG
Found at i:79768562 original size:47 final size:46
Alignment explanation
Indices: 79768490--79768626 Score: 157
Period size: 47 Copynumber: 3.0 Consensus size: 46
79768480 GCTCTCTGAT
** * *
79768490 AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATG
1 AGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGA-C
* * *
79768537 GGGAAATGAATAAGACCATGGTTGAATGATACCATGGCAACATGAC
1 AGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
79768583 AGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 AGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
79768627 TCGAAGATAA
Statistics
Matches: 75, Mismatches: 15, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
46 36 0.48
47 39 0.52
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.20
Consensus pattern (46 bp):
AGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:79768607 original size:46 final size:47
Alignment explanation
Indices: 79768486--79768626 Score: 169
Period size: 46 Copynumber: 3.0 Consensus size: 47
79768476 GTTTGCTCTC
* *
79768486 TGAT-AGAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATCAGAAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
** * * *
79768532 TGATGGGGAAATGAATAAGACCATGGTTGAATGATACCATGGCAACA
1 TGATCAGAAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * *
79768579 TGA-CAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATCAGAAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
79768625 TG
1 TG
79768627 TCGAAGATAA
Statistics
Matches: 79, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
46 40 0.51
47 39 0.49
ACGTcount: A:0.40, C:0.13, G:0.26, T:0.21
Consensus pattern (47 bp):
TGATCAGAAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:79774274 original size:28 final size:28
Alignment explanation
Indices: 79774241--79774315 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
79774231 ATTGTAGGAC
*
79774241 TATGAATGCGATTGGGCCTGATAGGCCA
1 TATGAATGAGATTGGGCCTGATAGGCCA
* *
79774269 TATGAATGTGATTGGGGCC-GATGGGCCA
1 TATGAATGAGATT-GGGCCTGATAGGCCA
79774297 TATGAATGAGATTGGGCCT
1 TATGAATGAGATTGGGCCT
79774316 AAAGGGGCCA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
27 5 0.12
28 32 0.76
29 5 0.12
ACGTcount: A:0.24, C:0.15, G:0.35, T:0.27
Consensus pattern (28 bp):
TATGAATGAGATTGGGCCTGATAGGCCA
Found at i:79774806 original size:44 final size:44
Alignment explanation
Indices: 79774743--79774833 Score: 148
Period size: 44 Copynumber: 2.1 Consensus size: 44
79774733 CAGTCTGATT
*
79774743 AGGTTGTATATGGGTTGGGATTTATGGAATAG-AGGAAGAATATG
1 AGGTTGCATATGGGTTGGGATTTATGGAA-AGAAGGAAGAATATG
*
79774787 AGGTTGCATATGGGTTGGGATTTATGGAACGAAGGAAGAATATG
1 AGGTTGCATATGGGTTGGGATTTATGGAAAGAAGGAAGAATATG
79774831 AGG
1 AGG
79774834 ATCGCATGGT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 1 0.02
44 43 0.98
ACGTcount: A:0.32, C:0.02, G:0.37, T:0.29
Consensus pattern (44 bp):
AGGTTGCATATGGGTTGGGATTTATGGAAAGAAGGAAGAATATG
Found at i:79779237 original size:47 final size:47
Alignment explanation
Indices: 79779178--79779305 Score: 166
Period size: 47 Copynumber: 2.7 Consensus size: 47
79779168 GTGCAGATAA
* * * * ** *
79779178 TACCTTAATTTGGCTAGGGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTAATCCGAGAGAAGT
* * *
79779225 TACCTTGATTTGGCTATAGGCCATGGTATAGGTAATCCGGGATAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTAATCCGAGAGAAGT
79779272 TACCTTGATTTGGCTATGGGCCATGGTATAGGTA
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTA
79779306 CTTATCAATT
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTAATCCGAGAGAAGT
Found at i:79783473 original size:49 final size:48
Alignment explanation
Indices: 79783351--79783532 Score: 176
Period size: 49 Copynumber: 3.8 Consensus size: 48
79783341 CTCGAGAGGT
* * *
79783351 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGAT-TTTGATA
* *
79783401 G-CTAGTGTAAGACCATGTATGGGACATGGCGTCGAACTTGATTTTGATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATCG-ACTTGATTTTGATA
* * *
79783450 GTCAGTGTAAGACCATGTCTGGGACATGACATTGACTTGA--TGGAT-
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATTTTGATA
* *
79783495 GATCCAGTATAAGACCATGTCTGGGACATGGAATCGAC
1 G-T-CAGTGTAAGACCATGTCTGGGACATGGCATCGAC
79783533 AATATACCAT
Statistics
Matches: 112, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
45 1 0.01
46 5 0.04
47 30 0.27
48 6 0.05
49 37 0.33
50 33 0.29
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (48 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATTTTGATA
Found at i:79789309 original size:29 final size:29
Alignment explanation
Indices: 79789246--79789313 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
79789236 TAATCAACCG
79789246 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
79789275 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
79789304 CGCACACTTA
1 CGCACACTTA
79789314 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:79789425 original size:174 final size:174
Alignment explanation
Indices: 79789135--79789462 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
79789125 AACTCAAGGT
* *
79789135 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
79789200 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
79789265 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
79789309 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
79789374 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
79789439 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
79789463 TGTACAATTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:79789454 original size:29 final size:30
Alignment explanation
Indices: 79789415--79789493 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
79789405 CTTAATAATC
79789415 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
79789445 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
79789474 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
79789494 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:79796165 original size:41 final size:40
Alignment explanation
Indices: 79796086--79796183 Score: 124
Period size: 41 Copynumber: 2.4 Consensus size: 40
79796076 TCATCTCATG
* *
79796086 TGGCACTTAGTGTACGATTCGACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGAATCGACATAGCTTCGGCTATATA
* * * *
79796126 TGGCACTTAGTGTGTGAGATCGAGATAGCTTCTGTTATATA
1 TGGCACTTAGTGTGCGA-ATCGACATAGCTTCGGCTATATA
*
79796167 AGGCACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
79796184 TTTGAGATAG
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 15 0.31
41 34 0.69
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGAATCGACATAGCTTCGGCTATATA
Found at i:79796205 original size:40 final size:39
Alignment explanation
Indices: 79796087--79796206 Score: 109
Period size: 41 Copynumber: 3.0 Consensus size: 39
79796077 CATCTCATGT
* * *
79796087 GGCACTTAGTGTACGATTCGACATAG-CTTCGGCTATATAT
1 GGCACTTAGTGTGCGATTCGAGATAGTCTT--GCTATATAA
* * *
79796127 GGCACTTAGTGTGTGAGATCGAGATAG-CTTCTGTTATATAA
1 GGCACTTAGTGTGCGA-TTCGAGATAGTC-T-TGCTATATAA
*
79796168 GGCACTTAGTGTGCGATTTGAGATAGATCTTGCTATATA
1 GGCACTTAGTGTGCGATTCGAGATAG-TCTTGCTATATA
79796207 CTACACTTAA
Statistics
Matches: 65, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
40 30 0.46
41 32 0.49
42 2 0.03
43 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (39 bp):
GGCACTTAGTGTGCGATTCGAGATAGTCTTGCTATATAA
Found at i:79796468 original size:17 final size:17
Alignment explanation
Indices: 79796446--79796487 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
79796436 ATATTATATG
79796446 AGCTTACTAAGCTATAA
1 AGCTTACTAAGCTATAA
*
79796463 AGCTTACTAATCTATAA
1 AGCTTACTAAGCTATAA
79796480 AGCTTACT
1 AGCTTACT
79796488 TTATTTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (17 bp):
AGCTTACTAAGCTATAA
Found at i:79803700 original size:40 final size:40
Alignment explanation
Indices: 79803653--79803760 Score: 162
Period size: 40 Copynumber: 2.7 Consensus size: 40
79803643 CGACATCAAA
79803653 TCAGCTATATATGGCACTTAGTGTGCGATTCAACAAAGCT
1 TCAGCTATATATGGCACTTAGTGTGCGATTCAACAAAGCT
* ** * *
79803693 TCGGCTATATATGGCACTTAGTGTGCGATTTGAGAGAGCT
1 TCAGCTATATATGGCACTTAGTGTGCGATTCAACAAAGCT
*
79803733 TCAGCTATATATTGCACTTAGTGTGCGA
1 TCAGCTATATATGGCACTTAGTGTGCGA
79803761 GATATCAAGT
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (40 bp):
TCAGCTATATATGGCACTTAGTGTGCGATTCAACAAAGCT
Found at i:79808270 original size:30 final size:30
Alignment explanation
Indices: 79808236--79808304 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
79808226 ACGGGGTAAG
* *
79808236 CCGTGTGTCACACACAGCCTAGACCCATGC
1 CCGTGTGTCACACACAGCCTAAACCCACGC
79808266 CCGTGTGTCACACACAGCCTAAACCCACGC
1 CCGTGTGTCACACACAGCCTAAACCCACGC
79808296 CCGTGTGTC
1 CCGTGTGTC
79808305 TACCCGTGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.22, C:0.41, G:0.20, T:0.17
Consensus pattern (30 bp):
CCGTGTGTCACACACAGCCTAAACCCACGC
Found at i:79813288 original size:51 final size:51
Alignment explanation
Indices: 79813160--79814162 Score: 1766
Period size: 51 Copynumber: 19.8 Consensus size: 51
79813150 TATTGTGAGG
* * * * *
79813160 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC--AT-ATTGTTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACT-TCGA
* *
79813209 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813260 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813311 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813362 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813413 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813464 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813515 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813566 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813617 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813668 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813719 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813770 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813821 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813872 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813923 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
79813974 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
* * * ** * *
79814025 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT-GGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
* * * * *
79814075 TCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-GG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
* *
79814124 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
79814163 AGAAACCTTC
Statistics
Matches: 924, Mismatches: 26, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
49 71 0.08
50 44 0.05
51 807 0.87
52 2 0.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
Found at i:79816884 original size:15 final size:15
Alignment explanation
Indices: 79816866--79816898 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
79816856 TGGATTTACG
79816866 TATCATGGATTTCTT
1 TATCATGGATTTCTT
*
79816881 TATCTTGGATTTCTT
1 TATCATGGATTTCTT
79816896 TAT
1 TAT
79816899 TCTTGCTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (15 bp):
TATCATGGATTTCTT
Found at i:79818981 original size:30 final size:29
Alignment explanation
Indices: 79818945--79819003 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
79818935 TTCCCGAGCC
79818945 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATT-TGCAAAAGTT
*
79818975 TAGGGGCAAAATGGTAATTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTTGCAAAAGTT
79819004 CGTATGATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 9 0.33
30 17 0.63
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.27
Consensus pattern (29 bp):
TAGGGGCAAAATGGTAATTTGCAAAAGTT
Found at i:79820344 original size:50 final size:50
Alignment explanation
Indices: 79819499--79820332 Score: 1668
Period size: 50 Copynumber: 16.7 Consensus size: 50
79819489 AGCTATTGTG
79819499 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79819549 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79819599 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79819649 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79819699 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79819749 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79819799 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79819849 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79819899 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79819949 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79819999 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79820049 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79820099 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79820149 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79820199 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79820249 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
79820299 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
79820333 TGCATACCAG
Statistics
Matches: 784, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 784 1.00
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
Found at i:79825008 original size:16 final size:16
Alignment explanation
Indices: 79824987--79825022 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
79824977 GGCAAATCCC
*
79824987 GAAATGCCGGAAAGCT
1 GAAATGCCGAAAAGCT
*
79825003 GAAATGCTGAAAAGCT
1 GAAATGCCGAAAAGCT
79825019 GAAA
1 GAAA
79825023 GTTTGGCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.14, G:0.28, T:0.14
Consensus pattern (16 bp):
GAAATGCCGAAAAGCT
Found at i:79825276 original size:28 final size:28
Alignment explanation
Indices: 79825236--79825337 Score: 150
Period size: 28 Copynumber: 3.6 Consensus size: 28
79825226 ATTGCATGAC
* * *
79825236 TATGAGTGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCCGATGGGCCA
* *
79825264 TATGAAAGTGATTGAGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCCGATGGGCCA
79825292 TATGAATGTGATTGGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCCGATGGGCCA
*
79825320 TATGAATGAGATTGGGCC
1 TATGAATGTGATTGGGCC
79825338 TAAAGGGGGC
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.24, C:0.17, G:0.35, T:0.25
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCCGATGGGCCA
Found at i:79830009 original size:17 final size:18
Alignment explanation
Indices: 79829976--79830009 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79829966 TTGAAAGAAG
79829976 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
79829994 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
79830010 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:79840007 original size:27 final size:27
Alignment explanation
Indices: 79839977--79840038 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
79839967 CCCTAGATTA
79839977 TAAAATGACT-GTAATGCCACTGTAGGG
1 TAAAATGACTCGTAATGCC-CTGTAGGG
*
79840004 TAAAATGA-TCGTGATGCCCTGTAGGG
1 TAAAATGACTCGTAATGCCCTGTAGGG
*
79840030 TCAAATGAC
1 TAAAATGAC
79840039 GATTATGCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 16 0.52
27 15 0.48
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (27 bp):
TAAAATGACTCGTAATGCCCTGTAGGG
Found at i:79840163 original size:27 final size:27
Alignment explanation
Indices: 79840119--79840230 Score: 154
Period size: 27 Copynumber: 4.2 Consensus size: 27
79840109 ATGGAGGAAG
** *
79840119 TACTG-TACTGGTTACTATGCCACATT
1 TACTGATACTGGTGGCTATGCCACAAT
*
79840145 TACTGTTACTGGTGGCTATGCCACAAT
1 TACTGATACTGGTGGCTATGCCACAAT
*
79840172 TACTGATACTGGTGGCTTTGCCACAAT
1 TACTGATACTGGTGGCTATGCCACAAT
* *
79840199 TACTGATACTGGTGGCTTTGCCACATT
1 TACTGATACTGGTGGCTATGCCACAAT
79840226 TACTG
1 TACTG
79840231 TTTCTAGTAG
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
26 5 0.06
27 74 0.94
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (27 bp):
TACTGATACTGGTGGCTATGCCACAAT
Found at i:79840418 original size:33 final size:32
Alignment explanation
Indices: 79840381--79840481 Score: 86
Period size: 33 Copynumber: 3.2 Consensus size: 32
79840371 TAATTGCATT
* * *
79840381 ACACTGTACTAATACTGCATTGGGCTTAGGCCC
1 ACACTGTACT-ATACTGAATAGGGCTAAGGCCC
*
79840414 ACAC--TA-T-TACTGTATAGGGCTAAGGCCC
1 ACACTGTACTATACTGAATAGGGCTAAGGCCC
*
79840442 AGACTGTACTGATACTGAATAGGGCTCAA-GCCC
1 ACACTGTACT-ATACTGAATAGGGCT-AAGGCCC
*
79840475 AGACTGT
1 ACACTGT
79840482 TATTGATCTG
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
28 21 0.37
30 3 0.05
31 3 0.05
33 28 0.49
34 2 0.04
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (32 bp):
ACACTGTACTATACTGAATAGGGCTAAGGCCC
Done.