Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 232 of 290
Found at i:80191323 original size:32 final size:32
Alignment explanation
Indices: 80191273--80191337 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
80191263 ATCCGAAACC
* * *
80191273 TTTTGCTTTCTTCGATCTAGTTCCGTAGTTGG
1 TTTTACTTTCCTCAATCTAGTTCCGTAGTTGG
80191305 TTTTACTTTCCTCAATCTAGTTCCGTAGTTGG
1 TTTTACTTTCCTCAATCTAGTTCCGTAGTTGG
80191337 T
1 T
80191338 CTTTTCAGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.12, C:0.20, G:0.18, T:0.49
Consensus pattern (32 bp):
TTTTACTTTCCTCAATCTAGTTCCGTAGTTGG
Found at i:80195901 original size:23 final size:23
Alignment explanation
Indices: 80195798--80195912 Score: 99
Period size: 23 Copynumber: 5.0 Consensus size: 23
80195788 TACCGATATA
* *
80195798 TCAGCCCAAAAGAGCTTACTGTTT
1 TCAGCTCAATAGAGCTTACTG-TT
* * * *
80195822 TTAGCTCATTGGAGCTTACCGTT
1 TCAGCTCAATAGAGCTTACTGTT
* *
80195845 TTAGCTCGTATA-AGCTTACTG-T
1 TCAGCTC-AATAGAGCTTACTGTT
**
80195867 TCAGCTTGATAGAGCTTACTGTT
1 TCAGCTCAATAGAGCTTACTGTT
*
80195890 TCAGCTCAATAGAGCTTATTGTT
1 TCAGCTCAATAGAGCTTACTGTT
80195913 CATCAACTTA
Statistics
Matches: 72, Mismatches: 16, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
21 3 0.04
22 15 0.21
23 38 0.53
24 16 0.22
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.37
Consensus pattern (23 bp):
TCAGCTCAATAGAGCTTACTGTT
Found at i:80196508 original size:36 final size:36
Alignment explanation
Indices: 80196461--80196581 Score: 242
Period size: 36 Copynumber: 3.4 Consensus size: 36
80196451 ATATTAAGAC
80196461 TTTGGCTTATTTTTGTGTATAAGTTAAGCCATGTGA
1 TTTGGCTTATTTTTGTGTATAAGTTAAGCCATGTGA
80196497 TTTGGCTTATTTTTGTGTATAAGTTAAGCCATGTGA
1 TTTGGCTTATTTTTGTGTATAAGTTAAGCCATGTGA
80196533 TTTGGCTTATTTTTGTGTATAAGTTAAGCCATGTGA
1 TTTGGCTTATTTTTGTGTATAAGTTAAGCCATGTGA
80196569 TTTGGCTTATTTT
1 TTTGGCTTATTTT
80196582 GATGTTATGT
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 85 1.00
ACGTcount: A:0.21, C:0.08, G:0.21, T:0.50
Consensus pattern (36 bp):
TTTGGCTTATTTTTGTGTATAAGTTAAGCCATGTGA
Found at i:80201330 original size:19 final size:19
Alignment explanation
Indices: 80201306--80201345 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
80201296 GTTCTACTCA
80201306 TTCTTATATATGTGAAACC
1 TTCTTATATATGTGAAACC
80201325 TTCTTATATATGTGAAACC
1 TTCTTATATATGTGAAACC
80201344 TT
1 TT
80201346 AGCATCTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (19 bp):
TTCTTATATATGTGAAACC
Found at i:80206614 original size:40 final size:40
Alignment explanation
Indices: 80206559--80206774 Score: 319
Period size: 40 Copynumber: 5.4 Consensus size: 40
80206549 GATGATAACG
80206559 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
80206599 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
* *
80206639 GGGCTAAGTCCCGAAGACATTTGGGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* **
80206679 GGGTTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* **
80206719 GGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
80206759 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
80206775 TACTTGGTTT
Statistics
Matches: 159, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 15 0.09
40 143 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:80219094 original size:27 final size:27
Alignment explanation
Indices: 80219056--80219274 Score: 348
Period size: 27 Copynumber: 8.1 Consensus size: 27
80219046 GTCGTTATTG
*
80219056 GACCGTAATACCCCTGTATGGTAAAAT
1 GACCGTAATACCCCTGTAGGGTAAAAT
80219083 GACCGTAATACCCCTGTAGGGTAAAAT
1 GACCGTAATACCCCTGTAGGGTAAAAT
* *
80219110 GATCGTGATACCCCTGTAGGGTAAAAT
1 GACCGTAATACCCCTGTAGGGTAAAAT
* * *
80219137 GATCGTGATACCCCTATAGGGTAAAAT
1 GACCGTAATACCCCTGTAGGGTAAAAT
*
80219164 GACCGTAATGCCCCTGTAGGGTAAAAT
1 GACCGTAATACCCCTGTAGGGTAAAAT
*
80219191 GACCGTAATGCCCCTGTAGGGTAAAAT
1 GACCGTAATACCCCTGTAGGGTAAAAT
*
80219218 GACCGTAATGCCCCTGTAGGGTAAAAT
1 GACCGTAATACCCCTGTAGGGTAAAAT
*
80219245 GACCGTAATACCCCTGTAAGGTAAAAT
1 GACCGTAATACCCCTGTAGGGTAAAAT
80219272 GAC
1 GAC
80219275 GATTGTGCCC
Statistics
Matches: 182, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 182 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23
Consensus pattern (27 bp):
GACCGTAATACCCCTGTAGGGTAAAAT
Found at i:80236193 original size:45 final size:45
Alignment explanation
Indices: 80236142--80236474 Score: 173
Period size: 45 Copynumber: 7.5 Consensus size: 45
80236132 TGGTGGCTTA
80236142 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTC
1 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTC
* * * * **** *
80236187 GATCTGCTTCATTGCAATTTCAGGGAA-ACAAGA-TCTAAAAT-TTG
1 AATCTGCTTCACTGCAACTTCA-GGAAGCCAAGATTC-GCCGTCTTC
** * * * * * * * ** * *
80236231 AGCCTACTCCACTACAACTTTAGGGAG-CTAGGTT-GGTGGCTTA
1 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTC
80236274 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTC
1 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTC
* * **** *
80236319 AATCTGCTTCACTGCAATTTCAGGGAA-ACAAGA-TCTAAAAT-TTG
1 AATCTGCTTCACTGCAACTTCA-GGAAGCCAAGATTC-GCCGTCTTC
** * * * * * * * ** * *
80236363 AGCCTACTCCACTACAACTTTAGGGAG-CTAGGTT-GGTGGCTTA
1 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTC
80236406 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTC
1 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTC
*
80236451 AATCTGCCTCACTGCAACTTCAGG
1 AATCTGCTTCACTGCAACTTCAGG
80236475 GAAACAAGAT
Statistics
Matches: 197, Mismatches: 77, Indels: 28
0.65 0.25 0.09
Matches are distributed among these distances:
43 56 0.28
44 48 0.24
45 85 0.43
46 8 0.04
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (45 bp):
AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTC
Found at i:80236313 original size:132 final size:132
Alignment explanation
Indices: 80236076--80236486 Score: 777
Period size: 132 Copynumber: 3.1 Consensus size: 132
80236066 CGACAACTTT
*
80236076 AGGGAAACAAGATCTAAAATTTTAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTT
1 AGGGAAACAAGATCTAAAATTTGAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTT
* *
80236141 AAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCGATCTGCTTCATTGCAATT
66 AAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCAATCTGCTTCACTGCAATT
80236206 TC
131 TC
80236208 AGGGAAACAAGATCTAAAATTTGAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTT
1 AGGGAAACAAGATCTAAAATTTGAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTT
80236273 AAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCAATCTGCTTCACTGCAATT
66 AAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCAATCTGCTTCACTGCAATT
80236338 TC
131 TC
80236340 AGGGAAACAAGATCTAAAATTTGAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTT
1 AGGGAAACAAGATCTAAAATTTGAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTT
* *
80236405 AAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCAATCTGCCTCACTGCAACT
66 AAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCAATCTGCTTCACTGCAATT
80236470 TC
131 TC
80236472 AGGGAAACAAGATCT
1 AGGGAAACAAGATCT
80236487 GTAGGATTTG
Statistics
Matches: 274, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 274 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (132 bp):
AGGGAAACAAGATCTAAAATTTGAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTT
AAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGCCGTCTTCAATCTGCTTCACTGCAATT
TC
Found at i:80239420 original size:27 final size:27
Alignment explanation
Indices: 80239390--80239652 Score: 278
Period size: 27 Copynumber: 9.7 Consensus size: 27
80239380 TTAGTTTACC
80239390 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
80239417 AAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
80239444 AAATCACCAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
80239471 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
80239498 AAATTACCAAAATACCCTTTGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
80239525 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
80239552 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
80239579 AAATTACCAAAATACCCCT-GTAGGGTA
1 AAATTACCAAAATACCCCTGGT-TTGTA
* * **
80239606 GAATTACCGAAATACCCCT-GTAGGGTA
1 AAATTACCAAAATACCCCTGGT-TTGTA
* *
80239633 GAATTACCGAAATACCCCTG
1 AAATTACCAAAATACCCCTG
80239653 TAGGATAGAA
Statistics
Matches: 212, Mismatches: 22, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
26 2 0.01
27 210 0.99
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:80239455 original size:54 final size:54
Alignment explanation
Indices: 80239390--80239595 Score: 322
Period size: 54 Copynumber: 3.8 Consensus size: 54
80239380 TTAGTTTACC
* *
80239390 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
80239444 AAATCACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
80239498 AAATTACCAAAATACCCTTTGTTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
80239552 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
80239596 CTGTAGGGTA
Statistics
Matches: 137, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 137 1.00
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:80239527 original size:81 final size:81
Alignment explanation
Indices: 80239390--80239595 Score: 322
Period size: 81 Copynumber: 2.5 Consensus size: 81
80239380 TTAGTTTACC
* *
80239390 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAA
80239455 ATACCCTTGGTTTATA
66 ATACCCTTGGTTTATA
* ** * * * *
80239471 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTTGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAA
*
80239536 ATACCCTTTGTTTATA
66 ATACCCTTGGTTTATA
80239552 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
80239596 CTGTAGGGTA
Statistics
Matches: 112, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 112 1.00
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATCACCAAA
ATACCCTTGGTTTATA
Found at i:80239611 original size:81 final size:80
Alignment explanation
Indices: 80239390--80239622 Score: 313
Period size: 81 Copynumber: 2.9 Consensus size: 80
80239380 TTAGTTTACC
* * * *
80239390 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTT-GTTTGTAAAATTACCAAA
80239455 ATACCCTTGGTTTATA
65 ATACCCTTGGTTTATA
* ** *
80239471 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTTGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-TTGTTTGTAAAATTACCAAA
*
80239536 ATACCCTTTGTTTATA
65 ATACCCTTGGTTTATA
* ** * *
80239552 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGT-TTGTAAAATTACCAAA
80239617 ATACCC
65 ATACCC
80239623 CTGTAGGGTA
Statistics
Matches: 132, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
80 3 0.02
81 127 0.96
82 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGTTTGTAAAATTACCAAAA
TACCCTTGGTTTATA
Found at i:80239653 original size:27 final size:27
Alignment explanation
Indices: 80239553--80240334 Score: 848
Period size: 27 Copynumber: 29.3 Consensus size: 27
80239543 TTGTTTATAA
* ** *
80239553 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
*
80239580 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
80239607 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
80239634 AATTACCGAAATACCCCTGTA--G--G
1 AATTACCGAAATACCCCTGTAGGGTAG
*
80239657 -A-TA--G-AATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
80239679 AATTACCGAAATACCCTTGTA-GG--G
1 AATTACCGAAATACCCCTGTAGGGTAG
*
80239703 ---TA--G-AATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
80239724 AATTACAGAAATACCCTTCTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
80239751 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
80239778 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
80239805 AATTACCGAAATACCCTTGTAGAATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
80239832 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
80239859 AATTATCGAAATACCCCTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
80239886 AGTTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
80239913 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
80239940 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
80239967 AATTACTTAAAATTACCAAAATACCCCTGTAGGGTAG
1 AATTAC---------CG-AAATACCCCTGTAGGGTAG
* * *
80240004 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
80240031 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
80240058 AATTACCGAAATACCCCTATAGAATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
80240085 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
80240112 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
80240139 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
80240166 AGTTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * * * *
80240193 AATTACTAAAATACTCCTATATGTTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
80240220 AATTATCTATATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
80240247 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
80240274 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
80240301 AATTACC-AAGATACCCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
80240328 AATTACC
1 AATTACC
80240335 ATTTTGCCCC
Statistics
Matches: 646, Mismatches: 79, Indels: 60
0.82 0.10 0.08
Matches are distributed among these distances:
18 22 0.03
19 4 0.01
20 1 0.00
21 5 0.01
22 1 0.00
23 2 0.00
24 4 0.01
25 1 0.00
26 8 0.01
27 572 0.89
36 1 0.00
37 25 0.04
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:80239711 original size:18 final size:18
Alignment explanation
Indices: 80239688--80239726 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
80239678 AAATTACCGA
* *
80239688 AATACCCTTGTAGGGTAG
1 AATACCCCTATAGGGTAG
80239706 AATACCCCTATAGGGTAG
1 AATACCCCTATAGGGTAG
80239724 AAT
1 AAT
80239727 TACAGAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (18 bp):
AATACCCCTATAGGGTAG
Found at i:80239990 original size:37 final size:37
Alignment explanation
Indices: 80239940--80240010 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
80239930 TGTAGGGTAG
*
80239940 AATTACCGAAATACCCCTGTAGGGTAGAATTACTTAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACTTAA
80239977 AATTACCAAAATACCCCTGTAGGGTAGAATTACT
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACT
80240011 GAAATACCCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (37 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTACTTAA
Found at i:80240049 original size:91 final size:91
Alignment explanation
Indices: 80239894--80240063 Score: 304
Period size: 91 Copynumber: 1.9 Consensus size: 91
80239884 ATAGTTATTG
*
80239894 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
80239959 TAGGGTAGAATTACTTAAAATTACCA
66 TAGGGTAGAATTACTTAAAATTACCA
* * *
80239985 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTATAGGGTAGAATTACTGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
80240050 TAGGGTAGAATTAC
66 TAGGGTAGAATTAC
80240064 CGAAATACCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 75 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (91 bp):
AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
TAGGGTAGAATTACTTAAAATTACCA
Found at i:80240695 original size:22 final size:22
Alignment explanation
Indices: 80240662--80240720 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
80240652 CACGTTATCG
80240662 ATGGC-TCTGTGCCAACCTAAAT
1 ATGGCTTC-GTGCCAACCTAAAT
* * * *
80240684 ATGGCTTCGTGCCATCTTGACT
1 ATGGCTTCGTGCCAACCTAAAT
80240706 ATGGCTTCGTGCCAA
1 ATGGCTTCGTGCCAA
80240721 ACATATTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTCGTGCCAACCTAAAT
Found at i:80240917 original size:27 final size:27
Alignment explanation
Indices: 80240887--80240944 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
80240877 TAAGTAGCTT
* *
80240887 TGCCAC-ATTATCTGATTCTGGTGGCTA
1 TGCCACAAATATCTG-TTCTGGAGGCTA
*
80240914 TGCCACAAATATCTGTTCTGGAGGCTT
1 TGCCACAAATATCTGTTCTGGAGGCTA
80240941 TGCC
1 TGCC
80240945 TCAACTTACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGGAGGCTA
Found at i:80241118 original size:6 final size:6
Alignment explanation
Indices: 80241087--80241180 Score: 95
Period size: 6 Copynumber: 15.3 Consensus size: 6
80241077 TTGCATTCAC
* *
80241087 ATTCTG ATTTTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
80241136 ATTCTG ATTCTG -TCACTTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG A-TTCTG AT
80241181 AATGTTTCTT
Statistics
Matches: 74, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
5 5 0.07
6 60 0.81
7 6 0.08
8 3 0.04
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:80254207 original size:21 final size:21
Alignment explanation
Indices: 80254183--80254252 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
80254173 CTGCCATCGT
* * *
80254183 TGCTGCCTCTTCCTCCCTTGC
1 TGCTGCCGCTGCCTCCCTCGC
*
80254204 TGCTACCGCTGCCTCCCTCGC
1 TGCTGCCGCTGCCTCCCTCGC
* **
80254225 TGTTGCCGCTGCCTCCCTCTT
1 TGCTGCCGCTGCCTCCCTCGC
80254246 TGCTGCC
1 TGCTGCC
80254253 TCCGCTCTAA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.01, C:0.47, G:0.19, T:0.33
Consensus pattern (21 bp):
TGCTGCCGCTGCCTCCCTCGC
Found at i:80259803 original size:9 final size:9
Alignment explanation
Indices: 80259786--80259922 Score: 184
Period size: 9 Copynumber: 15.2 Consensus size: 9
80259776 TATTTATGTA
80259786 TTATGTAAG
1 TTATGTAAG
*
80259795 TTCTGTAAG
1 TTATGTAAG
*
80259804 TTTTGTAAG
1 TTATGTAAG
*
80259813 TTATGTGAG
1 TTATGTAAG
80259822 TTATGTAAG
1 TTATGTAAG
80259831 TTATGTAAG
1 TTATGTAAG
*
80259840 TTATATAAG
1 TTATGTAAG
*
80259849 TTATGTGAG
1 TTATGTAAG
*
80259858 TTATGTGAG
1 TTATGTAAG
80259867 TTATGTAAG
1 TTATGTAAG
80259876 TTATGTAAG
1 TTATGTAAG
* *
80259885 TTATATGAG
1 TTATGTAAG
80259894 TTATGTAAG
1 TTATGTAAG
* *
80259903 TTATATGAG
1 TTATGTAAG
80259912 TTATGTAAG
1 TTATGTAAG
80259921 TT
1 TT
80259923 CAAGCATATA
Statistics
Matches: 111, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 111 1.00
ACGTcount: A:0.30, C:0.01, G:0.23, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:80260290 original size:47 final size:47
Alignment explanation
Indices: 80260226--80260359 Score: 203
Period size: 39 Copynumber: 3.0 Consensus size: 47
80260216 ATTTATAAAA
*
80260226 ATTATATTAATTTAATAATATTTAAATAAATTAATCCAAATTATATT
1 ATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATT
80260273 ATTATATTAATTAAATAATATTTAAATAAATTAATCC-----A-A--
1 ATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATT
80260312 ATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATT
1 ATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATT
80260359 A
1 A
80260360 ATTAAAATAA
Statistics
Matches: 78, Mismatches: 1, Indels: 16
0.82 0.01 0.17
Matches are distributed among these distances:
39 37 0.47
41 1 0.01
42 1 0.01
44 1 0.01
45 1 0.01
47 37 0.47
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.44
Consensus pattern (47 bp):
ATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATT
Found at i:80260320 original size:15 final size:14
Alignment explanation
Indices: 80260273--80260361 Score: 50
Period size: 14 Copynumber: 6.8 Consensus size: 14
80260263 AAATTATATT
*
80260273 ATTATATTAATTAA
1 ATTATATTAATCAA
*
80260287 ATAATATT--T-AA
1 ATTATATTAATCAA
*
80260298 A-TAAATTAATCCAA
1 ATTATATTAAT-CAA
*
80260312 ATTATATTAATTAA
1 ATTATATTAATCAA
*
80260326 ATAATATT--T-AA
1 ATTATATTAATCAA
*
80260337 A-TAAATTAATCCAA
1 ATTATATTAAT-CAA
80260351 ATTATATTAAT
1 ATTATATTAAT
80260362 TAAAATAAGA
Statistics
Matches: 56, Mismatches: 9, Indels: 19
0.67 0.11 0.23
Matches are distributed among these distances:
10 8 0.14
11 6 0.11
12 4 0.07
14 22 0.39
15 16 0.29
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (14 bp):
ATTATATTAATCAA
Found at i:80260325 original size:19 final size:19
Alignment explanation
Indices: 80260301--80260364 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
80260291 TATTTAAATA
80260301 AATTAATCCAAATTATATT
1 AATTAATCCAAATTATATT
* *
80260320 AATTAAAT--AATATTTAAATA
1 AATT-AATCCAA-A-TTATATT
80260340 AATTAATCCAAATTATATT
1 AATTAATCCAAATTATATT
80260359 AATTAA
1 AATTAA
80260365 AATAAGATTG
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
18 2 0.06
19 19 0.53
20 13 0.36
21 2 0.06
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTAATCCAAATTATATT
Found at i:80260612 original size:24 final size:24
Alignment explanation
Indices: 80260580--80260626 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
80260570 TTAACTTAAA
*
80260580 TGATAAAACGGACGATAATATTTG
1 TGATAAAACGGACGAGAATATTTG
80260604 TGATAAAACGGACGAGAATATTT
1 TGATAAAACGGACGAGAATATTT
80260627 CAATAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (24 bp):
TGATAAAACGGACGAGAATATTTG
Found at i:80264653 original size:28 final size:27
Alignment explanation
Indices: 80264601--80264653 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
80264591 GGTCTCTCTA
*
80264601 ATATATTTAAATTTTAGATTTATTTGC
1 ATATATTTAAATTTTAGATTCATTTGC
*
80264628 ATATACTTTAATTTTTA-ATATCATTT
1 ATATA-TTTAAATTTTAGAT-TCATTT
80264654 AGTCTATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.57
Consensus pattern (27 bp):
ATATATTTAAATTTTAGATTCATTTGC
Found at i:80264937 original size:21 final size:21
Alignment explanation
Indices: 80264908--80264963 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
80264898 ACTGTCTATA
**
80264908 ATTTAAGGTTTTATGGTTTTGG
1 ATTT-AGGTTTTATGGTTTAAG
80264930 ATTTAGGTTTTATGGTTTAAG
1 ATTTAGGTTTTATGGTTTAAG
*
80264951 ATTTAGGGTTTAT
1 ATTTAGGTTTTAT
80264964 AATTTAGGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
21 27 0.87
22 4 0.13
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.54
Consensus pattern (21 bp):
ATTTAGGTTTTATGGTTTAAG
Found at i:80264969 original size:21 final size:21
Alignment explanation
Indices: 80264929--80264969 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
80264919 TATGGTTTTG
* **
80264929 GATTTAGGTTTTATGGTTTAA
1 GATTTAGGGTTTATAATTTAA
80264950 GATTTAGGGTTTATAATTTA
1 GATTTAGGGTTTATAATTTA
80264970 GGCCAGTCTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (21 bp):
GATTTAGGGTTTATAATTTAA
Found at i:80265068 original size:29 final size:29
Alignment explanation
Indices: 80265013--80265068 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
80265003 GATTTAGGAA
*
80265013 TCTATATTTAAGGGTTTAAGGGTTTAGTG
1 TCTATATTTAAGGGTTTAAGGGCTTAGTG
* *
80265042 TCTATAGTTT-AGGGTTTTATGGCTTAG
1 TCTATA-TTTAAGGGTTTAAGGGCTTAG
80265069 GATTCAAGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 20 0.87
30 3 0.13
ACGTcount: A:0.21, C:0.05, G:0.27, T:0.46
Consensus pattern (29 bp):
TCTATATTTAAGGGTTTAAGGGCTTAGTG
Found at i:80265387 original size:10 final size:10
Alignment explanation
Indices: 80265372--80265398 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
80265362 AGACCTTATT
80265372 TAATTTGTTA
1 TAATTTGTTA
80265382 TAATTTGTTA
1 TAATTTGTTA
80265392 TAATTTG
1 TAATTTG
80265399 GTCCTATCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (10 bp):
TAATTTGTTA
Found at i:80265970 original size:151 final size:151
Alignment explanation
Indices: 80265694--80266147 Score: 551
Period size: 153 Copynumber: 3.0 Consensus size: 151
80265684 CGTTTTCCAT
* *
80265694 AAAGCGCCGCTAATGCCACTGAAGCTCAAAGAAAAACGACGTCGTT-TGTTTAATCTTTTAGCGG
1 AAAGCGCCGCTAATGCCACTGAAGCT---A-AAAAACAACGTCGTTCTCTTTAATCTTTTAGCGG
* ** *
80265758 CTTTTTTTTAAAAGCGCCGCTATAGA-TCAACTATAGCGGCGCTTTCTTAAAAACGCCGCTAATG
62 CATTTTTAAAAAAGCGCCGCTATAGATTGAACTATAGCGGCGCTTTCTTAAAAACGCCGCTAATG
80265822 TTGGATCTATTGCGGCATTTTTAGG
127 TTGGATCTATTGCGGCATTTTTAGG
* * * *
80265847 -AAGCGCTGCTAATGCCACTGAAGCTAAATAAACAACGTTGTTCTCTTTAATCTTTTAGCGTCGT
1 AAAGCGCCGCTAATGCCACTGAAGCTAAA-AAACAACGTCGTTCTCTTTAATCTTTTAGCGGCAT
* *
80265911 TTTTAAAAAAGCGCCGATATAGATTGACCTATAGCGGCGCTTTCTTAAAAACGCCGCTAATGTTG
65 TTTTAAAAAAGCGCCGCTATAGATTGAACTATAGCGGCGCTTTCTTAAAAACGCCGCTAATGTTG
** *
80265976 GATCTATTGCGGTGTTTTTTGG
130 GATCTATTGCGGCATTTTTAGG
* *
80265998 AAAGCTCCGCTAATGCCACTGAAGCTAAAAAA-AACGTCACCGTTCTCTTTAATCTTTTAGTGGC
1 AAAGCGCCGCTAATGCCACTGAAGCTAAAAAACAACGT---CGTTCTCTTTAATCTTTTAGCGGC
* * * * *
80266062 ATTTTTAAAAATGCGTCGCTATA-AGTTGATCTATAGCGGCGCTTTCTCAAAAACGTCGCTAATG
63 ATTTTTAAAAAAGCGCCGCTATAGA-TTGAACTATAGCGGCGCTTTCTTAAAAACGCCGCTAATG
* **
80266126 CTCTATCT-TTAGCGGCATTTTT
127 TTGGATCTATT-GCGGCATTTTT
80266148 TAACAAAAGC
Statistics
Matches: 261, Mismatches: 31, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
148 2 0.01
149 12 0.05
150 43 0.16
151 61 0.23
152 53 0.20
153 90 0.34
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (151 bp):
AAAGCGCCGCTAATGCCACTGAAGCTAAAAAACAACGTCGTTCTCTTTAATCTTTTAGCGGCATT
TTTAAAAAAGCGCCGCTATAGATTGAACTATAGCGGCGCTTTCTTAAAAACGCCGCTAATGTTGG
ATCTATTGCGGCATTTTTAGG
Found at i:80267016 original size:15 final size:15
Alignment explanation
Indices: 80266984--80267012 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
80266974 ATATTTTGTG
80266984 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
80266999 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
80267013 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:80276632 original size:17 final size:18
Alignment explanation
Indices: 80276610--80276647 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
80276600 ATTCTATTGC
80276610 ATTTTATTTT-TGTTTTT
1 ATTTTATTTTATGTTTTT
*
80276627 ATTTTATTTTATTTTTTT
1 ATTTTATTTTATGTTTTT
80276645 ATT
1 ATT
80276648 ACTAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.82
Consensus pattern (18 bp):
ATTTTATTTTATGTTTTT
Found at i:80279847 original size:5 final size:5
Alignment explanation
Indices: 80279837--80279894 Score: 57
Period size: 5 Copynumber: 11.2 Consensus size: 5
80279827 AATCACCCCA
*
80279837 ATTTT ATTTT ATTTT ATTTT A-TTT ATTTTT AATTTTT ATATT A-TTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT A-TTTT -A-TTTT ATTTT ATTTT
80279883 ATTCTT ATTTT A
1 ATT-TT ATTTT A
80279895 CTAATTAATT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
4 7 0.15
5 24 0.52
6 9 0.20
7 6 0.13
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (5 bp):
ATTTT
Found at i:80279880 original size:22 final size:21
Alignment explanation
Indices: 80279839--80279893 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 21
80279829 TCACCCCAAT
*
80279839 TTTATT-TTA-TTTTATTTTA
1 TTTATTCTTATTTTTATATTA
*
80279858 TTTATTTTTAATTTTTATATTA
1 TTTATTCTT-ATTTTTATATTA
80279880 TTTATTCTTATTTT
1 TTTATTCTTATTTT
80279894 ACTAATTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.19
20 2 0.06
21 6 0.19
22 17 0.55
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTATTCTTATTTTTATATTA
Found at i:80279901 original size:22 final size:20
Alignment explanation
Indices: 80279839--80279901 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 20
80279829 TCACCCCAAT
*
80279839 TTTATTTTATTTTAT-TTTA
1 TTTATTTTATTTTATAATTA
80279858 TTTATTTTTAATTTT-TATATTA
1 TTTA-TTTT-ATTTTATA-ATTA
80279880 TTTATTCTTATTTTACTAATTA
1 TTTATT-TTATTTTA-TAATTA
80279902 ATTAATTAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
19 4 0.11
20 5 0.14
21 12 0.33
22 13 0.36
23 2 0.06
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTATTTTATTTTATAATTA
Found at i:80279978 original size:14 final size:14
Alignment explanation
Indices: 80279952--80279992 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
80279942 ATTTTTAAAA
*
80279952 TATTTTTATTTTTAT
1 TATTTTTA-TTTTAC
80279967 TATTTTTATTTTAC
1 TATTTTTATTTTAC
*
80279981 TATTTCTATTTT
1 TATTTTTATTTT
80279993 TTTCTATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 16 0.67
15 8 0.33
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.76
Consensus pattern (14 bp):
TATTTTTATTTTAC
Found at i:80279984 original size:23 final size:24
Alignment explanation
Indices: 80279958--80280002 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
80279948 AAAATATTTT
*
80279958 TATTTTTATTATTTT-TATTTTAC
1 TATTTCTATTATTTTCTATTTTAC
*
80279981 TATTTCTATTTTTTTCTATTTT
1 TATTTCTATTATTTTCTATTTT
80280003 TTTTTTCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.76
Consensus pattern (24 bp):
TATTTCTATTATTTTCTATTTTAC
Found at i:80279990 original size:29 final size:30
Alignment explanation
Indices: 80279952--80280008 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
80279942 ATTTTTAAAA
*
80279952 TATTTTTATTTTTAT-TATTTTTATTTTAC
1 TATTTCTATTTTTATCTATTTTTATTTTAC
* *
80279981 TATTTCTATTTTTTTCTATTTTTTTTTT
1 TATTTCTATTTTTATCTATTTTTATTTT
80280009 CATTTTTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (30 bp):
TATTTCTATTTTTATCTATTTTTATTTTAC
Found at i:80280006 original size:14 final size:14
Alignment explanation
Indices: 80279952--80280016 Score: 55
Period size: 13 Copynumber: 4.6 Consensus size: 14
80279942 ATTTTTAAAA
80279952 TATTTTTATTTTTAT-
1 TATTTTT-TTTTT-TC
* *
80279967 TATTTTTATTTTAC
1 TATTTTTTTTTTTC
80279981 TATTTCTATTTTTTTC
1 TATTT-T-TTTTTTTC
80279997 TA-TTTTTTTTTTC
1 TATTTTTTTTTTTC
80280010 -ATTTTTT
1 TATTTTTT
80280017 ACTATTATCA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
12 1 0.02
13 13 0.31
14 10 0.24
15 10 0.24
16 8 0.19
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.78
Consensus pattern (14 bp):
TATTTTTTTTTTTC
Found at i:80280016 original size:12 final size:13
Alignment explanation
Indices: 80279952--80280016 Score: 51
Period size: 15 Copynumber: 4.6 Consensus size: 13
80279942 ATTTTTAAAA
*
80279952 TATTTTTATTTTTAT
1 TATTTTT-TTTTT-C
*
80279967 TATTTTTATTTTAC
1 TATTTTT-TTTTTC
80279981 TATTTCTATTTTTTTC
1 TA-TT-T-TTTTTTTC
80279997 TATTTTTTTTTTC
1 TATTTTTTTTTTC
80280010 -ATTTTTT
1 TATTTTTT
80280017 ACTATTATCA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
12 7 0.16
13 8 0.18
14 3 0.07
15 16 0.36
16 8 0.18
17 2 0.05
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.78
Consensus pattern (13 bp):
TATTTTTTTTTTC
Found at i:80289412 original size:27 final size:27
Alignment explanation
Indices: 80289369--80289465 Score: 88
Period size: 27 Copynumber: 3.6 Consensus size: 27
80289359 TATGAATGGA
**
80289369 AATTAGCACTTCAGTGCTCTCTTTTCT
1 AATTAGCACTTTGGTGCTCTCTTTTCT
*
80289396 AATTAGCACTTTGGTGCTCACTGTTT-T
1 AATTAGCACTTTGGTGCTCTCT-TTTCT
* * * **
80289423 GATTAGCATTTTGGTGCTTTCCGTTCT
1 AATTAGCACTTTGGTGCTCTCTTTTCT
* *
80289450 GACTAGCACTTTGGTG
1 AATTAGCACTTTGGTG
80289466 TTTTTTGACT
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 2 0.04
27 52 0.91
28 3 0.05
ACGTcount: A:0.16, C:0.21, G:0.20, T:0.43
Consensus pattern (27 bp):
AATTAGCACTTTGGTGCTCTCTTTTCT
Found at i:80289500 original size:22 final size:22
Alignment explanation
Indices: 80289447--80289501 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
80289437 TGCTTTCCGT
* *
80289447 TCTGACTAGCACTTTGGTGTTT
1 TCTGACTAGCACTTCGGTGTTG
*
80289469 TTTGACTAGCACTTCGGTGTTG
1 TCTGACTAGCACTTCGGTGTTG
*
80289491 TCTGAATAGCA
1 TCTGACTAGCA
80289502 TTATGGTGCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.40
Consensus pattern (22 bp):
TCTGACTAGCACTTCGGTGTTG
Found at i:80291946 original size:783 final size:783
Alignment explanation
Indices: 80290441--80292006 Score: 3024
Period size: 783 Copynumber: 2.0 Consensus size: 783
80290431 AGAGTAGAAA
80290441 GGGTTTGGTTAGGCTTAAGATGTAACGCCCCCACGCCCGAAACCGTTGCCGGAGTCGAGCTTGAG
1 GGGTTTGGTTAGGCTTAAGATGTAACGCCCCCACGCCCGAAACCGTTGCCGGAGTCGAGCTTGAG
80290506 GGGTTACCTGTAACATCCCAAACCCGGCCCCAAATGTTATGGCCGAATCTGATGTGCCACATTGA
66 GGGTTACCTGTAACATCCCAAACCCGGCCCCAAATGTTATGGCCGAATCTGATGTGCCACATTGA
80290571 AGTTAAAAATCCATGTTTCGTTTTAGTGCTTTAAAAACCAACTTTTGTTAAGCTCACAAAGTGAA
131 AGTTAAAAATCCATGTTTCGTTTTAGTGCTTTAAAAACCAACTTTTGTTAAGCTCACAAAGTGAA
80290636 TGGGAGCTAGGCATCAGGTAGGAATCCGTAACAGAGGAGGTGAGCCATGAAGGCTGCTTAAGTAC
196 TGGGAGCTAGGCATCAGGTAGGAATCCGTAACAGAGGAGGTGAGCCATGAAGGCTGCTTAAGTAC
*
80290701 CAAGCTCTTCTAATGGATCCAATCCTAGACATGGCCACAACCATTGCCACACTTGGTTAAATCGA
261 CAAGCTCTTCTAATGGATCCAATCCTAGACATGCCCACAACCATTGCCACACTTGGTTAAATCGA
*
80290766 GTTGTAATTTATTTAAGTTGAAATCTTTGATAAATCAGATAATTGTGGCGTGGTGTTATTTTGAA
326 GTTGTAATTTATTTAAGTTGAAATCTTTGATAAATCAGATAATCGTGGCGTGGTGTTATTTTGAA
*
80290831 AACAATTATCATTTTGAAAACACGTCCTAAGTTTAGCCCATTTATTAACAAACAGATTAAAGTTA
391 AACAATTATCATTTTGAAAACACGTCCTAAGTCTAGCCCATTTATTAACAAACAGATTAAAGTTA
80290896 TTAAAAATAAAATAATCCCAGAAAAATAATTAAAATGGCCTTATTACAACCCAAAACCAAACAAT
456 TTAAAAATAAAATAATCCCAGAAAAATAATTAAAATGGCCTTATTACAACCCAAAACCAAACAAT
*
80290961 AATATTAATAAGATAAAACTTATAAAGAAATAAATCAGCTACTTATTGCAATTCAAAGAAACAGA
521 AATATTAATAAGATAAAACTTATAAAGAAATAAATCAGCTACTTATTGCAATTAAAAGAAACAGA
*
80291026 AACAGTAGTGTGGCCATCTCCGAGTCCCTCGCAGCTCCAAACCATCTAAGCTTAGGGATTACTTG
586 AACAGTAGTGTGGCCATCTCCGAGTCCCTCGCAGCTCCAAACCATCTAAGCTTAGGGATTACCTG
80291091 CACAATTAGAAACGGGGTGAGTTTAAGAAAACTCAATGTGTAATCCCAATAACAAACAAACAGTG
651 CACAATTAGAAACGGGGTGAGTTTAAGAAAACTCAATGTGTAATCCCAATAACAAACAAACAGTG
* *
80291156 AAAACACAGTATTAGTACAATCTGGGTCAAAGCCCTATTTAGTCTTGACATATACTGGGCCGAAG
716 AAAACACAGTATCAGTACAATCTGGGCCAAAGCCCTATTTAGTCTTGACATATACTGGGCCGAAG
80291221 CCT
781 CCT
80291224 GGGTTTGGTTAGGCTTAAGATGTAACGCCCCCACGCCCGAAACCGTTGCCGGAGTCGAGCTTGAG
1 GGGTTTGGTTAGGCTTAAGATGTAACGCCCCCACGCCCGAAACCGTTGCCGGAGTCGAGCTTGAG
80291289 GGGTTACCTGTAACATCCCAAACCCGGCCCCAAATGTTATGGCCGAATCTGATGTGCCACATTGA
66 GGGTTACCTGTAACATCCCAAACCCGGCCCCAAATGTTATGGCCGAATCTGATGTGCCACATTGA
80291354 AGTTAAAAATCCATGTTTCGTTTTAGTGCTTTAAAAACCAACTTTTGTTAAGCTCACAAAGTGAA
131 AGTTAAAAATCCATGTTTCGTTTTAGTGCTTTAAAAACCAACTTTTGTTAAGCTCACAAAGTGAA
80291419 TGGGAGCTAGGCATCAGGTAGGAATCCGTAACAGAGGAGGTGAGCCATGAAGGCTGCTTAAGTAC
196 TGGGAGCTAGGCATCAGGTAGGAATCCGTAACAGAGGAGGTGAGCCATGAAGGCTGCTTAAGTAC
80291484 CAAGCTCTTCTAATGGATCCAATCCTAGACATGCCCACAACCATTGCCACACTTGGTTAAATCGA
261 CAAGCTCTTCTAATGGATCCAATCCTAGACATGCCCACAACCATTGCCACACTTGGTTAAATCGA
*
80291549 GTTGTAATTTATTTAAGTTGAAATCTTTGATAAATCGGATAATCGTGGCGTGGTGTTATTTTGAA
326 GTTGTAATTTATTTAAGTTGAAATCTTTGATAAATCAGATAATCGTGGCGTGGTGTTATTTTGAA
80291614 AACAATTATCATTTTGAAAACACGTCCTAAGTCTAGCCCATTTATTAACAAACAGATTAAAGTTA
391 AACAATTATCATTTTGAAAACACGTCCTAAGTCTAGCCCATTTATTAACAAACAGATTAAAGTTA
80291679 TTAAAAATAAAATAATCCCAGAAAAATAATTAAAATGGCCTTATTACAACCCAAAACCAAACAAT
456 TTAAAAATAAAATAATCCCAGAAAAATAATTAAAATGGCCTTATTACAACCCAAAACCAAACAAT
*
80291744 AATATTAATAAGATAAAACTTATAAAGAAATAAATCGGCTACTTATTGCAATTAAAAGAAACAGA
521 AATATTAATAAGATAAAACTTATAAAGAAATAAATCAGCTACTTATTGCAATTAAAAGAAACAGA
80291809 AACAGTAGTGTGGCCATCTCCGAGTCCCTCGCAGCTCCAAACCATCTAAGCTTAGGGATTACCTG
586 AACAGTAGTGTGGCCATCTCCGAGTCCCTCGCAGCTCCAAACCATCTAAGCTTAGGGATTACCTG
* * *
80291874 CACAGTTAGAAACGGGGTGAGTTTACGAAAACTCAGTGTGTAATCCCAATAACAAACAAACAGTG
651 CACAATTAGAAACGGGGTGAGTTTAAGAAAACTCAATGTGTAATCCCAATAACAAACAAACAGTG
80291939 AAAACACAGTATCAGTACAATCTGGGCCAAAGCCCTATTTAGTCTTGACATATACTGGGCCGAAG
716 AAAACACAGTATCAGTACAATCTGGGCCAAAGCCCTATTTAGTCTTGACATATACTGGGCCGAAG
80292004 CCT
781 CCT
80292007 TTCGTTTAAC
Statistics
Matches: 771, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
783 771 1.00
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (783 bp):
GGGTTTGGTTAGGCTTAAGATGTAACGCCCCCACGCCCGAAACCGTTGCCGGAGTCGAGCTTGAG
GGGTTACCTGTAACATCCCAAACCCGGCCCCAAATGTTATGGCCGAATCTGATGTGCCACATTGA
AGTTAAAAATCCATGTTTCGTTTTAGTGCTTTAAAAACCAACTTTTGTTAAGCTCACAAAGTGAA
TGGGAGCTAGGCATCAGGTAGGAATCCGTAACAGAGGAGGTGAGCCATGAAGGCTGCTTAAGTAC
CAAGCTCTTCTAATGGATCCAATCCTAGACATGCCCACAACCATTGCCACACTTGGTTAAATCGA
GTTGTAATTTATTTAAGTTGAAATCTTTGATAAATCAGATAATCGTGGCGTGGTGTTATTTTGAA
AACAATTATCATTTTGAAAACACGTCCTAAGTCTAGCCCATTTATTAACAAACAGATTAAAGTTA
TTAAAAATAAAATAATCCCAGAAAAATAATTAAAATGGCCTTATTACAACCCAAAACCAAACAAT
AATATTAATAAGATAAAACTTATAAAGAAATAAATCAGCTACTTATTGCAATTAAAAGAAACAGA
AACAGTAGTGTGGCCATCTCCGAGTCCCTCGCAGCTCCAAACCATCTAAGCTTAGGGATTACCTG
CACAATTAGAAACGGGGTGAGTTTAAGAAAACTCAATGTGTAATCCCAATAACAAACAAACAGTG
AAAACACAGTATCAGTACAATCTGGGCCAAAGCCCTATTTAGTCTTGACATATACTGGGCCGAAG
CCT
Found at i:80292139 original size:42 final size:42
Alignment explanation
Indices: 80292092--80292183 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
80292082 TGGCCCTTAG
* ** *
80292092 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
80292134 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
80292176 GCCCATTT
1 GCCCATTT
80292184 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:80292373 original size:26 final size:26
Alignment explanation
Indices: 80292328--80292477 Score: 257
Period size: 26 Copynumber: 5.8 Consensus size: 26
80292318 CCTCTTTAAT
80292328 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
80292353 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
80292379 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
80292405 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
80292431 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
80292457 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
80292478 GCACTTCCTC
Statistics
Matches: 116, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 10 0.09
26 106 0.91
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:80292401 original size:52 final size:52
Alignment explanation
Indices: 80292328--80292477 Score: 293
Period size: 52 Copynumber: 2.9 Consensus size: 52
80292318 CCTCTTTAAT
80292328 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
80292379 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
80292431 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
80292478 GCACTTCCTC
Statistics
Matches: 98, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
51 10 0.10
52 88 0.90
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:80293427 original size:27 final size:27
Alignment explanation
Indices: 80293397--80293599 Score: 147
Period size: 27 Copynumber: 7.4 Consensus size: 27
80293387 GTACATCTAC
* *
80293397 AAACCAAAGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
*
80293424 AAACCAATGGTATTTCTA-TAATTTTTAT
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
* * * * *
80293452 AAAGTCAAGGGTATTTCTGTAACTATGT
1 AAA-CCAAGGGTATTTCAGTAATTTTAT
* * ** *
80293480 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
*** * * *
80293507 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
** *
80293534 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
80293561 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
*
80293588 AAATCAAGGGTA
1 AAACCAAGGGTA
80293600 AAATAGTAAT
Statistics
Matches: 143, Mismatches: 29, Indels: 8
0.79 0.16 0.04
Matches are distributed among these distances:
27 114 0.80
28 15 0.10
29 14 0.10
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:80293606 original size:27 final size:27
Alignment explanation
Indices: 80293577--80293780 Score: 239
Period size: 27 Copynumber: 7.6 Consensus size: 27
80293567 AGGGTATTTT
* *
80293577 AGTAATTTTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCAAGGGTAAAAC
80293604 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
80293631 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
80293658 GGTAATTCTGTAAATTAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * * *
80293685 GGTAATTCTATAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* * **
80293712 -GATAATTATATAAATCGGGGGTAAAAC
1 AG-TAATTCTGTAAATCAAGGGTAAAAC
* *
80293739 AGTAATTATGTAAATCAGGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
*
80293766 GGTAATTCTGTAAAT
1 AGTAATTCTGTAAAT
80293781 AGGGGGTACT
Statistics
Matches: 156, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 154 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCAAGGGTAAAAC
Found at i:80293610 original size:54 final size:54
Alignment explanation
Indices: 80293394--80293599 Score: 198
Period size: 54 Copynumber: 3.8 Consensus size: 54
80293384 TTGGTACATC
* *
80293394 TACAAACCAAAGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTA-TAATTTT
1 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTT-TAGTAA-TTT
* * * * * * * *
80293449 TATAAAGTCAAGGGTATTTCTGTAACTATGTAAATCAGGGGTATTTTGGTAATTT
1 TACAAA-CCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTTAGTAATTT
*** * *** *
80293504 TACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTTAGTAATTT
* *
80293558 TACAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTA
1 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTA
80293600 AAATAGTAAT
Statistics
Matches: 119, Mismatches: 30, Indels: 5
0.77 0.19 0.03
Matches are distributed among these distances:
54 71 0.60
55 14 0.12
56 34 0.29
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (54 bp):
TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTTAGTAATTT
Found at i:80293636 original size:81 final size:80
Alignment explanation
Indices: 80293577--80293780 Score: 282
Period size: 81 Copynumber: 2.5 Consensus size: 80
80293567 AGGGTATTTT
* ** *
80293577 AGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTAT
1 AGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAC-GTAATTATAT
80293642 AAATCGAGGGTAAAAC
65 AAATCGAGGGTAAAAC
* * * * * *
80293658 GGTAATTCTGTAAATTAAGGGTAAAACGGTAATTCTATAAGTCGAGGGTAAAACGATAATTATAT
1 AGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG-TAATTATAT
*
80293723 AAATCGGGGGTAAAAC
65 AAATCGAGGGTAAAAC
*
80293739 AGTAATTATGTAAATCAGGGGTAAAACGGTAATTCTGTAAAT
1 AGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTGTAAAT
80293781 AGGGGGTACT
Statistics
Matches: 106, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 1 0.01
81 105 0.99
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.28
Consensus pattern (80 bp):
AGTAATTATGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGTAATTATATA
AATCGAGGGTAAAAC
Found at i:80293815 original size:27 final size:27
Alignment explanation
Indices: 80293794--80293883 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
80293784 GGGTACTTTG
*
80293794 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* *
80293821 ATAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
80293848 GTATTTTTACAAA-CTGAGGGTATTTCG
1 GTAATTTTACAAATC-GAAGGTATTTCA
80293875 GTAATTTTA
1 GTAATTTTA
80293884 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:80296071 original size:93 final size:93
Alignment explanation
Indices: 80295964--80296134 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80295954 GCCCCTAAGT
* *
80295964 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80296029 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
80296057 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80296122 CGAGTTCGGATGC
66 CGAGTTCGGATGC
80296135 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:80296131 original size:46 final size:46
Alignment explanation
Indices: 80295959--80296131 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
80295949 AACCCGCCCC
* * *
80295959 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
80296005 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
80296053 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
80296098 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80296132 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:80296588 original size:30 final size:30
Alignment explanation
Indices: 80296554--80296613 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
80296544 ATTTAATACG
80296554 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
80296584 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
80296614 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:80298011 original size:46 final size:46
Alignment explanation
Indices: 80297867--80298038 Score: 211
Period size: 46 Copynumber: 3.7 Consensus size: 46
80297857 TGTGTGAGGT
* * **
80297867 AGTGTAAGACATATCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGAGAGCC
* * * * * *
80297913 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTAAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGATGAGAGCC
*
80297961 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCAAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATG-AGAGCC
80298007 AGTGTAAGACATGTCTGGGACATGCATCGGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC
80298039 ATGAAATCTG
Statistics
Matches: 105, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
46 56 0.53
47 25 0.24
48 24 0.23
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGAGAGCC
Found at i:80304585 original size:20 final size:20
Alignment explanation
Indices: 80304560--80304604 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
80304550 ATAAAGTGCA
80304560 AAAGTCCTAATTTGATAGCT
1 AAAGTCCTAATTTGATAGCT
80304580 AAAGTCCTAATTTGATAGCT
1 AAAGTCCTAATTTGATAGCT
80304600 AAAGT
1 AAAGT
80304605 TATCAAATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (20 bp):
AAAGTCCTAATTTGATAGCT
Found at i:80305269 original size:30 final size:30
Alignment explanation
Indices: 80305224--80305299 Score: 100
Period size: 30 Copynumber: 2.6 Consensus size: 30
80305214 GCTTAGAGGT
* *
80305224 AAAA-TGGTCATTTTGCAAAAGTCTAGGGG
1 AAAATTGGTTATTTTGCAAAAGTCCAGGGG
***
80305253 CGTATTGGTTATTTTGCAAAAGTCCAGGGG
1 AAAATTGGTTATTTTGCAAAAGTCCAGGGG
80305283 AAAATTGGTTATTTTGC
1 AAAATTGGTTATTTTGC
80305300 CCAACTATGA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
29 1 0.03
30 37 0.97
ACGTcount: A:0.29, C:0.11, G:0.26, T:0.34
Consensus pattern (30 bp):
AAAATTGGTTATTTTGCAAAAGTCCAGGGG
Found at i:80305793 original size:46 final size:46
Alignment explanation
Indices: 80305637--80305859 Score: 188
Period size: 46 Copynumber: 4.8 Consensus size: 46
80305627 TCACTTGTGT
* * **
80305637 GAGCTAGTGTAAGACATGTCTGGGATATGCATCGGCCA-CATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CATCAAGATGA
* ** *
80305683 GAGCCAGTGTAAGACCATGCCTGGGACATGGCA-CTGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC-GGCATCAAGATGA
* * * * *
80305731 GTGCTAATGTAAGACATGTCTGGGACATGCATCGACCTCAAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGATG-A
* *
80305778 -AGCCAGTGTAAGACATGTCTGGGACATGCATCTGCTATGAA-AT--
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ATCAAGATGA
*
80305821 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
80305860 CCTTACCTCA
Statistics
Matches: 141, Mismatches: 26, Indels: 21
0.75 0.14 0.11
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 62 0.44
47 33 0.23
48 19 0.13
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGATGA
Found at i:80317488 original size:39 final size:39
Alignment explanation
Indices: 80317434--80317511 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
80317424 TGTCAAGGTT
80317434 GTTTAAAAGTATAATTAGGCCATGTTAAATTCCATTGAA
1 GTTTAAAAGTATAATTAGGCCATGTTAAATTCCATTGAA
80317473 GTTTAAAAGTATAATTAGGCCATGTTAAATTCCATTGAA
1 GTTTAAAAGTATAATTAGGCCATGTTAAATTCCATTGAA
80317512 CTCTCTAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (39 bp):
GTTTAAAAGTATAATTAGGCCATGTTAAATTCCATTGAA
Found at i:80320184 original size:27 final size:27
Alignment explanation
Indices: 80320154--80320206 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
80320144 AGCATAATCA
*
80320154 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGCATTACGG
* * *
80320181 TCATTTTGCCCTATAGGGGCATTACG
1 TCATTTTACCATACAGGGGCATTACG
80320207 ATTTTTTTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.34
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGCATTACGG
Found at i:80326101 original size:20 final size:20
Alignment explanation
Indices: 80326064--80326102 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
80326054 CTGCAATATG
* *
80326064 AAAATTTTTAAATTTTTCCT
1 AAAATTTCTAAATGTTTCCT
*
80326084 AAAATTTCTATATGTTTCC
1 AAAATTTCTAAATGTTTCC
80326103 AATTTAGTCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.03, T:0.51
Consensus pattern (20 bp):
AAAATTTCTAAATGTTTCCT
Found at i:80332595 original size:40 final size:41
Alignment explanation
Indices: 80332542--80332635 Score: 95
Period size: 40 Copynumber: 2.3 Consensus size: 41
80332532 TTTTACATAT
* * *
80332542 CTATATCCGTATAAACA-TTTCACAAAAGCACTT-CATATAA
1 CTATTTCCATATAAACAGATTCACAAAAGCA-TTCCATATAA
* * * *
80332582 CTATTTCCATAT-AACAGATTCATAAAATCATTCCATGTAT
1 CTATTTCCATATAAACAGATTCACAAAAGCATTCCATATAA
80332622 CTATTTCCATATAA
1 CTATTTCCATATAA
80332636 CCGATTTATA
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
39 6 0.14
40 37 0.84
41 1 0.02
ACGTcount: A:0.39, C:0.21, G:0.04, T:0.35
Consensus pattern (41 bp):
CTATTTCCATATAAACAGATTCACAAAAGCATTCCATATAA
Found at i:80334071 original size:93 final size:93
Alignment explanation
Indices: 80333959--80334130 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
80333949 GCCCATAAGT
* * *
80333959 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
80334024 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
80334052 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAG
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
80334117 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
80334131 CAAACATTCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:80334126 original size:46 final size:46
Alignment explanation
Indices: 80333951--80334126 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
80333941 TGTAACCCGC
* *
80333951 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
80333997 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
80334043 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
80334090 CCATAAGTGAACTCAGACTCAACTCAGCGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
80334127 TGCCCAAACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:80346924 original size:50 final size:50
Alignment explanation
Indices: 80346849--80347241 Score: 380
Period size: 50 Copynumber: 7.8 Consensus size: 50
80346839 ACCGAAGCTC
* * *
80346849 TCTGGTACGCATAGTAGCCAGCACTTAGTACTACATATGTGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * *
80346899 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * *
80346949 TCTGATACACACAGTAGCCTGCA-TTAGTACTACACATGTGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * * * * *
80346999 TCGGGTA-ACATAATAGCCTACACTTGGTACTACACACGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * ** * * * *
80347048 TCTGATATATGTAGTAGCCTACACTTAGTACTACACATGTGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* *
80347099 TCTGGTACACATAATAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * *
80347149 TATAGTACACGTAGTAGCCTACACTTAGTACTACACACT-TGACTTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACA-TGTGACCTAACAA
* ** *
80347198 CCGTATTAGACACATAGTAGCCTGCACATAGTACTACACATGTG
1 TC-TGGT--ACACATAGTAGCCTGCACTTAGTACTACACATGTG
80347242 TTCTCACAAT
Statistics
Matches: 278, Mismatches: 56, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
49 41 0.15
50 165 0.59
51 42 0.15
52 30 0.11
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:80347044 original size:99 final size:101
Alignment explanation
Indices: 80346860--80347185 Score: 437
Period size: 99 Copynumber: 3.3 Consensus size: 101
80346850 CTGGTACGCA
* * * * * *
80346860 TAGTAGCC-AGCACTTAGTACTACATATGTGACCTAA-CAATCTGGTACACGTAGTAGCCTGCAC
1 TAGTAGCCTA-CACTTAGTACTACACATGTGATCGAAGCTATCTGGTACACATAATAGCCTGCAC
*
80346923 TTAGTACTACACACGTGACCTAACCATCTGATACACA
65 TTAGTACTACACACGTGACCTAACCATCTGATACACG
* * * *
80346960 CAGTAGCCTGCA-TTAGTACTACACATGTGATCGAAGCTATCGGGTA-ACATAATAGCCTACACT
1 TAGTAGCCTACACTTAGTACTACACATGTGATCGAAGCTATCTGGTACACATAATAGCCTGCACT
* * *
80347023 TGGTACTACACACGTGACCTAACCATCTGATATATG
66 TAGTACTACACACGTGACCTAACCATCTGATACACG
80347059 TAGTAGCCTACACTTAGTACTACACATGTGATCGAAGCTATCTGGTACACATAATAGCCTGCACT
1 TAGTAGCCTACACTTAGTACTACACATGTGATCGAAGCTATCTGGTACACATAATAGCCTGCACT
* * * *
80347124 TAGTACTACACATGCGACCTAACAATAT-AGTACACG
66 TAGTACTACACACGTGACCTAACCATCTGA-TACACG
80347160 TAGTAGCCTACACTTAGTACTACACA
1 TAGTAGCCTACACTTAGTACTACACA
80347186 CTTGACTTAA
Statistics
Matches: 196, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
99 76 0.39
100 51 0.26
101 69 0.35
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTACACTTAGTACTACACATGTGATCGAAGCTATCTGGTACACATAATAGCCTGCACT
TAGTACTACACACGTGACCTAACCATCTGATACACG
Found at i:80347251 original size:102 final size:101
Alignment explanation
Indices: 80346860--80347239 Score: 310
Period size: 99 Copynumber: 3.8 Consensus size: 101
80346850 CTGGTACGCA
* *** * * * *
80346860 TAGTAGCC-AGCACTTAGTACTACATATGTGACCTAA-CAATCTGGTACACGTAGTAGCCTGCAC
1 TAGTAGCCTA-CACTTAGTACTACACATGTGATAAAACCTATCTAGTACACATAATAGCCTGCAC
* * * * * *
80346923 TTAGTACTACACACGTGACCTAACCATCT-GATACACA
65 ATAGTACTACACATGCGACCTAACAATATAG-TACACG
* * ** * ** * *
80346960 CAGTAGCCTGCA-TTAGTACTACACATGTGATCGAAGCTATCGGGTA-ACATAATAGCCTACACT
1 TAGTAGCCTACACTTAGTACTACACATGTGATAAAACCTATCTAGTACACATAATAGCCTGCACA
* * * * * * *
80347023 TGGTACTACACACGTGACCTAACCATCT-GATATATG
66 TAGTACTACACATGCGACCTAACAATATAG-TACACG
** * * *
80347059 TAGTAGCCTACACTTAGTACTACACATGTGATCGAAGCTATCTGGTACACATAATAGCCTGCACT
1 TAGTAGCCTACACTTAGTACTACACATGTGATAAAACCTATCTAGTACACATAATAGCCTGCACA
80347124 TAGTACTACACATGCGACCTAACAATATAGTACACG
66 TAGTACTACACATGCGACCTAACAATATAGTACACG
*
80347160 TAGTAGCCTACACTTAGTACTACACACT-TGACTTAAAACCGTAT-TAG-ACACATAGTAGCCTG
1 TAGTAGCCTACACTTAGTACTACACA-TGTGA--TAAAACC-TATCTAGTACACATAATAGCCTG
80347222 CACATAGTACTACACATG
62 CACATAGTACTACACATG
80347240 TGTTCTCACA
Statistics
Matches: 240, Mismatches: 31, Indels: 16
0.84 0.11 0.06
Matches are distributed among these distances:
99 76 0.32
100 50 0.21
101 72 0.30
102 33 0.14
103 6 0.03
104 3 0.01
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTACACTTAGTACTACACATGTGATAAAACCTATCTAGTACACATAATAGCCTGCACA
TAGTACTACACATGCGACCTAACAATATAGTACACG
Found at i:80349144 original size:25 final size:24
Alignment explanation
Indices: 80349078--80349144 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
80349068 CTATCTGGAG
* *
80349078 CTTCCTAATATAGTTCTTTGTGAA
1 CTTCCCAATATAGTTCTTTGTCAA
*
80349102 CTTCCCGATATAGTTCTTTGTCAA
1 CTTCCCAATATAGTTCTTTGTCAA
*
80349126 CTTCCCAATTATAGCTCTT
1 CTTCCCAA-TATAGTTCTT
80349145 ATGAGCTTCC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 28 0.76
25 9 0.24
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.43
Consensus pattern (24 bp):
CTTCCCAATATAGTTCTTTGTCAA
Found at i:80350670 original size:42 final size:42
Alignment explanation
Indices: 80350611--80350719 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 42
80350601 TACAGGGATT
*
80350611 TTCACAAGGCCTGGTACACGCCCGTGTACCTGGCCCGTGTCC
1 TTCACAAGGCCTAGTACACGCCCGTGTACCTGGCCCGTGTCC
* * **
80350653 TTCACACGGCCTAGTACACGCCAGTGTACCTGGCTTGTGTCC
1 TTCACAAGGCCTAGTACACGCCCGTGTACCTGGCCCGTGTCC
* *
80350695 TTCACATGGCC-A-TGCACGCCCGTGT
1 TTCACAAGGCCTAGTACACGCCCGTGT
80350720 TCTAGCCCAT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
40 11 0.19
41 1 0.02
42 47 0.80
ACGTcount: A:0.16, C:0.36, G:0.25, T:0.24
Consensus pattern (42 bp):
TTCACAAGGCCTAGTACACGCCCGTGTACCTGGCCCGTGTCC
Found at i:80351832 original size:46 final size:44
Alignment explanation
Indices: 80351733--80351951 Score: 174
Period size: 46 Copynumber: 4.7 Consensus size: 44
80351723 GTCTTGTGTT
* *
80351733 GATGCCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG-C--TCGTCTC-AAGGCC
* *
80351781 AATGCATGTCCCAAACATGTCTTACACTAGCTTACGTCTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-T-CGTCTCAAGGCC
* * *
80351827 GATGCATGTCCCGGACATGTATTACACTAGCACTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAG--CTCGTCTCAAGGCC
* * * * *
80351873 GATGCCGTGTCCTAGACATGGTCTTACACTGGCTC-TCATAATATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCGTC-TCA-A-GGCC
80351921 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
80351952 CCTCAATAAC
Statistics
Matches: 140, Mismatches: 21, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
45 4 0.03
46 77 0.55
47 39 0.28
48 20 0.14
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCGTCTCAAGGCC
Found at i:80352345 original size:30 final size:30
Alignment explanation
Indices: 80352288--80352345 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
80352278 CAATTCACAT
* * *
80352288 TTTTGGTAAAATGACCATTTAGCCCCTAGA
1 TTTTGATAAAATGACAATTTAGACCCTAGA
80352318 TTTTGATAAAATGACAAATTTA-ACCCTA
1 TTTTGATAAAATGAC-AATTTAGACCCTA
80352346 AGCCTGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.34
Consensus pattern (30 bp):
TTTTGATAAAATGACAATTTAGACCCTAGA
Found at i:80359150 original size:40 final size:40
Alignment explanation
Indices: 80359095--80359197 Score: 138
Period size: 40 Copynumber: 2.6 Consensus size: 40
80359085 NNNNNNNNNN
*
80359095 CTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TG
1 CTATATCCGGGCTAAGTCCCGAAGGCATTCATGCGAGTTG
* **
80359134 ACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 -CTATATCCGGGCTAAGTCCCGAAGGCATTCATGCGAGTTG
*
80359175 CTATATCC-GGCTAAATCCCGAAG
1 CTATATCCGGGCTAAGTCCCGAAG
80359198 ATACTTGGGT
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 13 0.23
40 41 0.73
41 2 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (40 bp):
CTATATCCGGGCTAAGTCCCGAAGGCATTCATGCGAGTTG
Found at i:80362689 original size:52 final size:52
Alignment explanation
Indices: 80362611--80362716 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
80362601 AAACATAATG
* *
80362611 TAAGATTATATCAAAAACATCATTCATTCTCAAATCATGAACTCACCAAACT
1 TAAGATTATATAAAAAACATCATTCATTCTCAAATCATGAACTCACAAAACT
*
80362663 TAAGATTATATAAAAAACGTCATTCATTCTCAAATCATGAACTCACAAAACT
1 TAAGATTATATAAAAAACATCATTCATTCTCAAATCATGAACTCACAAAACT
80362715 TA
1 TA
80362717 CCTTCTCCTT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (52 bp):
TAAGATTATATAAAAAACATCATTCATTCTCAAATCATGAACTCACAAAACT
Found at i:80370593 original size:30 final size:30
Alignment explanation
Indices: 80370555--80370620 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
80370545 GCCTCAAGTA
80370555 GCCAAAGCTAGTGTAAATCGCACACTTAGT
1 GCCAAAGCTAGTGTAAATCGCACACTTAGT
* * *
80370585 GGCAAAGCTAGTTTAAATCGCCCACTTAGT
1 GCCAAAGCTAGTGTAAATCGCACACTTAGT
80370615 GCCAAA
1 GCCAAA
80370621 ACTTCTGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (30 bp):
GCCAAAGCTAGTGTAAATCGCACACTTAGT
Found at i:80387423 original size:56 final size:56
Alignment explanation
Indices: 80387337--80387568 Score: 437
Period size: 56 Copynumber: 4.1 Consensus size: 56
80387327 ACAAGGGATG
80387337 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
80387393 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
80387449 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
80387505 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
80387561 ATGGGCAA
1 ATGGGCAA
80387569 TAAACTAATA
Statistics
Matches: 172, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 172 1.00
ACGTcount: A:0.45, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:80400014 original size:39 final size:39
Alignment explanation
Indices: 80399913--80400424 Score: 859
Period size: 39 Copynumber: 13.1 Consensus size: 39
80399903 TTTAATGATG
* ** *
80399913 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGATACTAAT
* *
80399952 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
80399993 TCCGGGCTAAGCCCGAAGGCATTTGTCCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
80400032 TCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
80400071 TCCGGGTTAAGTCCC-AAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
80400110 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
80400149 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
80400188 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
80400227 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
80400266 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
80400305 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
80400344 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
80400383 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
80400422 TCC
1 TCC
80400425 ATTGTGCATA
Statistics
Matches: 449, Mismatches: 19, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
38 3 0.01
39 402 0.90
40 35 0.08
41 9 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:80408068 original size:40 final size:37
Alignment explanation
Indices: 80408011--80408254 Score: 202
Period size: 40 Copynumber: 6.1 Consensus size: 37
80408001 TTGAATGATG
* * *
80408011 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGT-ACTA-A
80408051 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAG-TACTAA
* * *
80408090 TTCCGGGCTAAGCCCGAAGGCATCTGTGCGAGTTACTAAA
1 -TCCGGACTAAGTCCGAAGGCATTTGTGCGAG-TACT-AA
80408130 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAG-TACT-AA
**
80408170 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAG-TACTA-A
* * * **
80408210 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGTA-CTA-A
80408250 TCCGG
1 TCCGG
80408255 TTAAATTCCG
Statistics
Matches: 177, Mismatches: 18, Indels: 18
0.83 0.08 0.08
Matches are distributed among these distances:
39 37 0.21
40 131 0.74
41 9 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (37 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTACTAA
Found at i:80408143 original size:79 final size:80
Alignment explanation
Indices: 80408011--80408235 Score: 305
Period size: 79 Copynumber: 2.8 Consensus size: 80
80408001 TTGAATGATG
* * * *
80408011 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
*
80408075 TGTGCGAGATACTAAT
65 TGTGCGAGATACTAAA
*
80408091 TCCGGGCTAAG-CCCGAAGGCATCTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
*
80408155 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* * *
80408170 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCAT
80408233 TTG
64 TTG
80408236 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
79 65 0.50
80 63 0.48
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:80408242 original size:80 final size:79
Alignment explanation
Indices: 80408011--80408254 Score: 298
Period size: 80 Copynumber: 3.1 Consensus size: 79
80408001 TTGAATGATG
* * * *
80408011 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGACTAAGATCCGAAGGCATT
*
80408075 TGTGCGAGATACTAAT
65 TGTGCGAG-TACTAAA
*
80408091 TCCGGGCTAAG-CCCGAAGGCATCTGTGCGAGTTACTA-AATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGACTAAGATCCGAAGGCATT
80408154 TGTGCGAGTTACTAAA
65 TGTGCGAG-TACTAAA
* * *
80408170 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT-CCGAAGGCATT
** *
80408234 TGAACGAGTAGCTATA
65 TGTGCGAGTA-CTAAA
80408250 TCCGG
1 TCCGG
80408255 TTAAATTCCG
Statistics
Matches: 144, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 65 0.45
80 76 0.53
81 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGTACTAAA
Found at i:80416150 original size:31 final size:31
Alignment explanation
Indices: 80416115--80416176 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
80416105 TCCAATTTAG
*
80416115 AGTTTCATAGTTAATTTATACCTTTAACTAA
1 AGTTTCATAGTTAATTGATACCTTTAACTAA
80416146 AGTTTCATAGTTAATTGATACCTTTAACTAA
1 AGTTTCATAGTTAATTGATACCTTTAACTAA
80416177 TAGAACTCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (31 bp):
AGTTTCATAGTTAATTGATACCTTTAACTAA
Found at i:80418964 original size:23 final size:23
Alignment explanation
Indices: 80418931--80418976 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
80418921 TAGTTGAGTT
80418931 CGTGGTCAAGCTTGGTCTAGGGA
1 CGTGGTCAAGCTTGGTCTAGGGA
*
80418954 CGTGGTTAAGCTTGGTCTAGGGA
1 CGTGGTCAAGCTTGGTCTAGGGA
80418977 AAGACATGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.17, C:0.15, G:0.39, T:0.28
Consensus pattern (23 bp):
CGTGGTCAAGCTTGGTCTAGGGA
Found at i:80421178 original size:39 final size:39
Alignment explanation
Indices: 80421005--80421181 Score: 201
Period size: 39 Copynumber: 4.5 Consensus size: 39
80420995 ATTCACTTTT
* * * * *
80421005 AAGCATATATCACATTACACATATAATCACATAACATTT
1 AAGCATATATCGCAATACTCATATGATCACATAACATTC
* * * **
80421044 AAGCATATATCACAATACTCATATAATTACATAATGTTC
1 AAGCATATATCGCAATACTCATATGATCACATAACATTC
* * * *
80421083 AAGCACATATTGCAATACTCATATGATTACGTAACATTC
1 AAGCATATATCGCAATACTCATATGATCACATAACATTC
*
80421122 AAGCATATATCGCAATACTCATACGATCACATAACATTC
1 AAGCATATATCGCAATACTCATATGATCACATAACATTC
* *
80421161 AAGCATATGTCGTAATACTCA
1 AAGCATATATCGCAATACTCA
80421182 AAGACATGTT
Statistics
Matches: 118, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 118 1.00
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (39 bp):
AAGCATATATCGCAATACTCATATGATCACATAACATTC
Found at i:80434541 original size:50 final size:50
Alignment explanation
Indices: 80434471--80434658 Score: 205
Period size: 50 Copynumber: 3.7 Consensus size: 50
80434461 TATCATTCGA
* *
80434471 TACACGTAGTGGCCTTCACATAGTACTACACACGTGATCAAACTTTCTGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAACTTTCTGG
* * * *
80434521 TTCACGTAGTAGCCTGCACATAGTACTACACACGTGATTGAAGCTATCTGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGA-TCAAACTTTCTGG
* * * * *** * **
80434572 TACGCGTAGTAGCCTGCACATAGTACTACACATGCGACCTTTCATTCCAG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAACTTTCTGG
* *
80434622 TACATGTAGTAGCCTACACATAGTACTACACACGTGA
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGA
80434659 CCATCACTTT
Statistics
Matches: 113, Mismatches: 24, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
50 70 0.62
51 43 0.38
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (50 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCAAACTTTCTGG
Found at i:80443321 original size:40 final size:40
Alignment explanation
Indices: 80443238--80443540 Score: 378
Period size: 40 Copynumber: 7.6 Consensus size: 40
80443228 TTGAATGCTG
* * * * * *
80443238 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
80443278 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
80443318 TCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
80443358 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
80443398 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
80443438 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTACA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
80443478 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
80443517 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
80443541 TGAACGAGGA
Statistics
Matches: 237, Mismatches: 23, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
39 34 0.14
40 195 0.82
41 8 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:80444971 original size:31 final size:31
Alignment explanation
Indices: 80444936--80445010 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
80444926 CGTTTACAGT
*
80444936 AAAGGCTTTGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
*
80444967 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
80444998 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
80445011 TAGTAACCGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:80450933 original size:40 final size:40
Alignment explanation
Indices: 80450872--80451118 Score: 327
Period size: 40 Copynumber: 6.2 Consensus size: 40
80450862 CGGAATTTAG
* * * *
80450872 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
80450912 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
80450952 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
80450992 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
80451032 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
80451072 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
80451112 CCGGATA
1 CCGGATA
80451119 TCATTCAAAT
Statistics
Matches: 188, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 182 0.97
41 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:80455034 original size:22 final size:22
Alignment explanation
Indices: 80455006--80455049 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
80454996 GTTCAAATGT
*
80455006 GATTTGTTGCATGCTGAAAACA
1 GATTTGTTACATGCTGAAAACA
80455028 GATTTGTTACATGCTGAAAACA
1 GATTTGTTACATGCTGAAAACA
80455050 TGTATAAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (22 bp):
GATTTGTTACATGCTGAAAACA
Found at i:80456050 original size:30 final size:30
Alignment explanation
Indices: 80456016--80456077 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
80456006 AAGGCATACC
*
80456016 ACACCAATTTCATGCATTATTAAACTTGTT
1 ACACCAATTTCATGCATTAATAAACTTGTT
80456046 ACACCAATTTCATGCATTAATAAACTTGTT
1 ACACCAATTTCATGCATTAATAAACTTGTT
80456076 AC
1 AC
80456078 CATAACTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.37
Consensus pattern (30 bp):
ACACCAATTTCATGCATTAATAAACTTGTT
Found at i:80468129 original size:25 final size:27
Alignment explanation
Indices: 80468094--80468143 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 27
80468084 CAGCTAGTGA
*
80468094 AATTTTAATGT-T-CGAATGTATGCTG
1 AATTTTAATGTGTCCGAATGCATGCTG
*
80468119 AATTTTTATGTGTCCGAATGCATGC
1 AATTTTAATGTGTCCGAATGCATGC
80468144 CAGAATTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 1 0.05
27 10 0.48
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (27 bp):
AATTTTAATGTGTCCGAATGCATGCTG
Found at i:80468143 original size:27 final size:25
Alignment explanation
Indices: 80468094--80468172 Score: 77
Period size: 27 Copynumber: 3.0 Consensus size: 25
80468084 CAGCTAGTGA
*
80468094 AATTTTAATGTTCGAATGTATGCTG
1 AATTTTAATGTTCGAATGCATGCTG
* *
80468119 AATTTTTATGTGTCCGAATGCATGCCAG
1 AATTTTAATGT-T-CGAATGCATG-CTG
* *
80468147 AATTTAACATGTTCAAATGCATGCTG
1 AATTTTA-ATGTTCGAATGCATGCTG
80468173 GAGTGTTTTG
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
25 10 0.23
26 3 0.07
27 18 0.42
28 8 0.19
29 4 0.09
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (25 bp):
AATTTTAATGTTCGAATGCATGCTG
Found at i:80471474 original size:40 final size:40
Alignment explanation
Indices: 80471419--80471532 Score: 185
Period size: 40 Copynumber: 2.9 Consensus size: 40
80471409 CAGTATGTTA
80471419 TATCCGGGCTAAGTCCCGAAAAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAAAGCATTCGTGCTGGTGATG
* *
80471459 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGTTGGTGATG
1 TATCCGGGCTAAGTCCCGAAAAGCATTCGTGCTGGTGATG
* *
80471499 TATCCGGGCTAAGCCCCG-AAGGCATTCGTGCTGG
1 TATCCGGGCTAAGTCCCGAAAAGCATTCGTGCTGG
80471533 GACAAAATCC
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 13 0.19
40 55 0.81
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAAAGCATTCGTGCTGGTGATG
Found at i:80471823 original size:25 final size:24
Alignment explanation
Indices: 80471777--80471826 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
80471767 TGTGTAATAA
*
80471777 CGAATGAATAGGGCATTATGTGTG
1 CGAATGAATAGGGCACTATGTGTG
* *
80471801 CGAATGATTAGAGGCACTGTGTGTG
1 CGAATGAATAG-GGCACTATGTGTG
80471826 C
1 C
80471827 AAATTCTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.26, C:0.12, G:0.34, T:0.28
Consensus pattern (24 bp):
CGAATGAATAGGGCACTATGTGTG
Found at i:80471847 original size:29 final size:28
Alignment explanation
Indices: 80471814--80471912 Score: 83
Period size: 29 Copynumber: 3.5 Consensus size: 28
80471804 ATGATTAGAG
*
80471814 GCACTGTGTGTGCAAATTCTTTTAACCGA
1 GCACTATGTGTGCAAATTC-TTTAACCGA
** **
80471843 GCACTATGTGTGCGAAA-TCGGTAATTGA
1 GCACTATGTGTGC-AAATTCTTTAACCGA
* * * *
80471871 GGCACTGTGTGTGCGAGTTCTTCAACCGA
1 -GCACTATGTGTGCAAATTCTTTAACCGA
80471900 GCACTATGTGTGC
1 GCACTATGTGTGC
80471913 GAGATCGGTC
Statistics
Matches: 53, Mismatches: 14, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
28 18 0.34
29 32 0.60
30 3 0.06
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGCAAATTCTTTAACCGA
Found at i:80471914 original size:57 final size:58
Alignment explanation
Indices: 80471811--80471921 Score: 179
Period size: 57 Copynumber: 1.9 Consensus size: 58
80471801 CGAATGATTA
*
80471811 GAGGCACTGTGTGTGCAAATTCTTTTAACCGAGCACTATGTGTGCGAAATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTCTTTCAACCGAGCACTATGTGTGCGAAATCGGTAATT
* * *
80471869 GAGGCACTGTGTGTGCGAGTTC-TTCAACCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCAAATTCTTTCAACCGAGCACTATGTGTGCGAAATCGGT
80471922 CAGTGGGCAC
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
57 29 0.59
58 20 0.41
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.29
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCAAATTCTTTCAACCGAGCACTATGTGTGCGAAATCGGTAATT
Found at i:80471931 original size:28 final size:28
Alignment explanation
Indices: 80471843--80471939 Score: 79
Period size: 28 Copynumber: 3.4 Consensus size: 28
80471833 TTTTAACCGA
* * *
80471843 GCACTATGTGTGCGAAATCGGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTCACTG-G
* * * * *
80471872 GCACTGTGTGTGCGAGTTC-TTCAACCGA
1 GCACTATGTGTGCGAGATCGGTC-ACTGG
*
80471900 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCACTGG
*
80471928 GCACTAAGTGTG
1 GCACTATGTGTG
80471940 TGAAATGAGA
Statistics
Matches: 51, Mismatches: 15, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
28 31 0.61
29 20 0.39
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCACTGG
Found at i:80485091 original size:49 final size:49
Alignment explanation
Indices: 80485018--80485142 Score: 144
Period size: 49 Copynumber: 2.5 Consensus size: 49
80485008 AGATGCCGAC
* *
80485018 CCATGTCCCTGACATGGTCTTACACTAGCTTTCATATAGCGAG-GTCAATG
1 CCATGTCCCAGACA-GGTCTTACACTAGCTCTCATATAGCG-GTGTCAATG
* * * ** **
80485068 CCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATTGGTGTTGATG
1 CCATGTCCCAGACAGGTCTTACACTAGCTCTCATATAGCGGTGTCAATG
80485117 CCATGTCCCAGACAGGTCTTACACTA
1 CCATGTCCCAGACAGGTCTTACACTA
80485143 ACACACAACA
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
48 1 0.02
49 50 0.79
50 12 0.19
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (49 bp):
CCATGTCCCAGACAGGTCTTACACTAGCTCTCATATAGCGGTGTCAATG
Found at i:80485268 original size:46 final size:46
Alignment explanation
Indices: 80485162--80485328 Score: 174
Period size: 46 Copynumber: 3.6 Consensus size: 46
80485152 AAGCTGACAC
* * * * *
80485162 CATGTCCTAGACAGGTCTTACACTAGCTTGTCTATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCT-TATCTCAACGCTGATG
* *
80485210 CATGTTCCAGACATGTCTTACACTAGCTCTTGTCTCAACGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTTATCTCAACGCTGATG
* * * * * *
80485256 CATGTCCCAGACATGTCTTACACTGGCTCTCATAT-TATGTCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTTATCTCAACG-CTGATG
*
80485302 CATGTCCTAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
80485329 ACACATATCA
Statistics
Matches: 101, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
45 2 0.02
46 73 0.72
47 2 0.02
48 24 0.24
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTTATCTCAACGCTGATG
Found at i:80500800 original size:5 final size:5
Alignment explanation
Indices: 80500790--80500826 Score: 56
Period size: 5 Copynumber: 7.0 Consensus size: 5
80500780 GATATCAACC
80500790 ATAAA ATAAA ATAAA ATAAA ATAAAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA AT--AAA ATAAA ATAAA
80500827 TTTTTATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 25 0.83
7 5 0.17
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:80504099 original size:40 final size:40
Alignment explanation
Indices: 80504016--80504202 Score: 229
Period size: 40 Copynumber: 4.7 Consensus size: 40
80504006 TTCTAACATG
* * *
80504016 AGCCTACGGGTCTTT-AACCCGGATTCCATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAACCCGGATACAATTCCAGCACGA
* *
80504055 AGCCTGCGGGTCTTTAAACCCGGATACAATTCTAGCA-TA
1 AGCCTGCGGGTCTTTAAACCCGGATACAATTCCAGCACGA
* *
80504094 TAGCCTGCGGGTCTTT-AAGCCGAGATACAATTCTAGCACGA
1 -AGCCTGCGGGTCTTTAAACCCG-GATACAATTCCAGCACGA
*
80504135 AGCCTGCGGGTCTTTAAGA-CCGGATACAATTCCAGCACAA
1 AGCCTGCGGGTCTTTAA-ACCCGGATACAATTCCAGCACGA
* *
80504175 AGCCTGTGGGTCTTTAAGCCCGGATACA
1 AGCCTGCGGGTCTTTAAACCCGGATACA
80504203 CACACCAAAT
Statistics
Matches: 130, Mismatches: 11, Indels: 13
0.84 0.07 0.08
Matches are distributed among these distances:
39 20 0.15
40 104 0.80
41 5 0.04
42 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAACCCGGATACAATTCCAGCACGA
Found at i:80504148 original size:80 final size:79
Alignment explanation
Indices: 80504016--80504202 Score: 259
Period size: 80 Copynumber: 2.3 Consensus size: 79
80504006 TTCTAACATG
* * * *
80504016 AGCCTACGGGTCTTTAACCCGGATTCCATTCCAGCACGAAGCCTGCGGGTCTTTAA-ACCCGGAT
1 AGCCTGCGGGTCTTTAAGCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGA-CCGGAT
* * *
80504080 ACAATTCTAGCATAT
65 ACAATTCCAGCACAA
*
80504095 AGCCTGCGGGTCTTTAAGCCGAGATACAATTCTAGCACGAAGCCTGCGGGTCTTTAAGACCGGAT
1 AGCCTGCGGGTCTTTAAGCCG-GATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGACCGGAT
80504160 ACAATTCCAGCACAA
65 ACAATTCCAGCACAA
*
80504175 AGCCTGTGGGTCTTTAAGCCCGGATACA
1 AGCCTGCGGGTCTTTAAG-CCGGATACA
80504203 CACACCAAAT
Statistics
Matches: 96, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
79 19 0.20
80 73 0.76
81 4 0.04
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (79 bp):
AGCCTGCGGGTCTTTAAGCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGACCGGATA
CAATTCCAGCACAA
Found at i:80509808 original size:12 final size:12
Alignment explanation
Indices: 80509791--80509817 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
80509781 ATTCCGAAGT
80509791 ATATATATATAC
1 ATATATATATAC
80509803 ATATATATATAC
1 ATATATATATAC
80509815 ATA
1 ATA
80509818 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:80510330 original size:27 final size:27
Alignment explanation
Indices: 80510299--80510475 Score: 194
Period size: 27 Copynumber: 6.5 Consensus size: 27
80510289 TAAATTGTAC
80510299 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
80510326 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
80510352 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
80510380 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
80510408 AGCACTAAGTGTACGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
80510435 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
80510462 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
80510476 AGACTCAATA
Statistics
Matches: 126, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:80510413 original size:82 final size:81
Alignment explanation
Indices: 80510300--80510455 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
80510290 AAATTGTACA
* * *
80510300 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTA-GCACTAAGTG
80510364 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
80510381 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTACGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTAGCACTAAGTG
*
80510446 TGCGAGTTGA
65 TGCGAATTGA
80510456 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:80510467 original size:82 final size:81
Alignment explanation
Indices: 80510296--80510475 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 81
80510286 GATTAAATTG
* * *
80510296 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGATGCACTAA
80510361 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
80510377 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTACGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTACGAAATGAATACGAT-GCACT
* **
80510441 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
80510459 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
80510476 AGACTCAATA
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:80512789 original size:21 final size:21
Alignment explanation
Indices: 80512763--80512805 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
80512753 CGATCGGGGT
80512763 ACCATCAGCTAAAGGTTAAGG
1 ACCATCAGCTAAAGGTTAAGG
*
80512784 ACCATCAGCTAAAGGTTCAGG
1 ACCATCAGCTAAAGGTTAAGG
80512805 A
1 A
80512806 AGTTGATGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (21 bp):
ACCATCAGCTAAAGGTTAAGG
Found at i:80519627 original size:27 final size:27
Alignment explanation
Indices: 80519597--80519650 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
80519587 ATATATAATT
*
80519597 ATTATAAAATAAT-TAAATTTTACTTAA
1 ATTAT-AAATAATGTAAATTTTAATTAA
* *
80519624 ATTATTAATATTGTAAATTTTAATTAA
1 ATTATAAATAATGTAAATTTTAATTAA
80519651 TTTTATAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (27 bp):
ATTATAAATAATGTAAATTTTAATTAA
Found at i:80523421 original size:23 final size:23
Alignment explanation
Indices: 80523388--80523434 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
80523378 TAGGCCCTAT
80523388 TTCGAGATGTTACATTCTTTCCC
1 TTCGAGATGTTACATTCTTTCCC
*
80523411 TTCGAGCTGTTACATTCTTTCCC
1 TTCGAGATGTTACATTCTTTCCC
80523434 T
1 T
80523435 ATTCCTTTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.15, C:0.28, G:0.13, T:0.45
Consensus pattern (23 bp):
TTCGAGATGTTACATTCTTTCCC
Found at i:80524761 original size:48 final size:48
Alignment explanation
Indices: 80524684--80524801 Score: 157
Period size: 48 Copynumber: 2.5 Consensus size: 48
80524674 ACCACGATTA
* *
80524684 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGAT
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAT
* * *
80524732 ATGATAGCCAGTGTAAGACCATGTTTGGGATATGGCATCGGCATTGAT
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAT
* *
80524780 ATG-TGTGCTAGTGTAAGACCAT
1 ATGAT-AGCCAGTGTAAGACCAT
80524802 ATTGGGATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
47 1 0.02
48 61 0.98
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (48 bp):
ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAT
Found at i:80524830 original size:47 final size:48
Alignment explanation
Indices: 80524693--80524859 Score: 144
Period size: 48 Copynumber: 3.5 Consensus size: 48
80524683 AATGAGAGCC
* * * * * * *
80524693 AGTGTAAGACCATGTCTGGGACATGGCATCAGCGTTGATA--TGATAGCC
1 AGTGTAAGACCATAT-TGGGATATAGCATCGGCATCGATATGTGAT-GCT
* * *
80524741 AGTGTAAGACCATGTTTGGGATATGGCATCGGCATTGATATGTG-TGCT
1 AGTGTAAGACCAT-ATTGGGATATAGCATCGGCATCGATATGTGATGCT
* * **
80524789 AGTGTAAGACCATATTGGGATATAGCATCGGCCTCGGTATGTGATTTT
1 AGTGTAAGACCATATTGGGATATAGCATCGGCATCGATATGTGATGCT
80524837 A-TGTAAGACCATATCTGGGATAT
1 AGTGTAAGACCATAT-TGGGATAT
80524860 GACGTTAATA
Statistics
Matches: 102, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
47 38 0.37
48 60 0.59
49 2 0.02
50 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (48 bp):
AGTGTAAGACCATATTGGGATATAGCATCGGCATCGATATGTGATGCT
Found at i:80532689 original size:79 final size:81
Alignment explanation
Indices: 80532543--80532727 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
80532533 TTGAATGATG
* * * *
80532543 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCAAAAGCAAT
80532607 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
80532622 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCAAAAGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCAAAAGCA
*
80532684 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
80532702 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80532728 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.62
80 33 0.37
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCAAAAGCAAT
TGTGCGAGATACTATA
Found at i:80532741 original size:40 final size:40
Alignment explanation
Indices: 80532544--80532727 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
80532534 TGAATGATGT
* * * *
80532544 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
80532584 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
80532624 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * * *
80532662 TCCGGGTTAAGTCCCAAAAGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80532703 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
80532728 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
39 35 0.29
40 75 0.62
41 10 0.08
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:80538886 original size:88 final size:88
Alignment explanation
Indices: 80538737--80538912 Score: 343
Period size: 88 Copynumber: 2.0 Consensus size: 88
80538727 GCGAAACAAA
*
80538737 GGGGTTCCGTTAGTTAAGGTGTTATGGCTCAAACACGGGATCGAGGAAGCTACTTGGGAAACCGA
1 GGGGTTCCGTTAGTGAAGGTGTTATGGCTCAAACACGGGATCGAGGAAGCTACTTGGGAAACCGA
80538802 GAGCTCGATGAAAGAACGATACC
66 GAGCTCGATGAAAGAACGATACC
80538825 GGGGTTCCGTTAGTGAAGGTGTTATGGCTCAAACACGGGATCGAGGAAGCTACTTGGGAAACCGA
1 GGGGTTCCGTTAGTGAAGGTGTTATGGCTCAAACACGGGATCGAGGAAGCTACTTGGGAAACCGA
80538890 GAGCTCGATGAAAGAACGATACC
66 GAGCTCGATGAAAGAACGATACC
80538913 TAAACCTATT
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.30, C:0.18, G:0.32, T:0.20
Consensus pattern (88 bp):
GGGGTTCCGTTAGTGAAGGTGTTATGGCTCAAACACGGGATCGAGGAAGCTACTTGGGAAACCGA
GAGCTCGATGAAAGAACGATACC
Found at i:80540750 original size:79 final size:81
Alignment explanation
Indices: 80540614--80540798 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
80540604 TTGAATGATG
*
80540614 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
80540678 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
80540693 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
80540755 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
80540773 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80540799 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:80540812 original size:40 final size:40
Alignment explanation
Indices: 80540615--80540798 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
80540605 TGAATGATGT
* * * *
80540615 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
80540655 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
80540695 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80540733 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80540774 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
80540799 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:80540820 original size:79 final size:79
Alignment explanation
Indices: 80540667--80540831 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
80540657 GGACTAAGAT
* **
80540667 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
80540732 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
80540746 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
80540809 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
80540825 CCGAAGG
1 CCGAAGG
80540832 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:80542369 original size:51 final size:52
Alignment explanation
Indices: 80542307--80542426 Score: 190
Period size: 52 Copynumber: 2.3 Consensus size: 52
80542297 TTTTAATAAT
* * *
80542307 TGGGGCA-AAGCCCTTTTTGGTAAATTGGGGCA-AAGCCCTTTTCAATAAAC
1 TGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTCTCAATAAAC
*
80542357 TGGGTCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTCTCAATAAAC
1 TGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTCTCAATAAAC
80542409 TGGGGCATAAGCCCTTTT
1 TGGGGCATAAGCCCTTTT
80542427 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
50 6 0.10
51 23 0.37
52 34 0.54
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (52 bp):
TGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTCTCAATAAAC
Found at i:80542373 original size:26 final size:26
Alignment explanation
Indices: 80542291--80542426 Score: 154
Period size: 26 Copynumber: 5.3 Consensus size: 26
80542281 CTGGAGGCCT
*
80542291 AGCCTCTTTT-AAT-AATTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
*** *
80542315 AGCCCTTTTTGGTAAATTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
80542340 AGCCCTTTTCAATAAACTGGGTCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
80542366 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
80542392 AGCCCTTCTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
80542418 AGCCCTTTT
1 AGCCCTTTT
80542427 GCACTTCCTC
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 30 0.32
26 55 0.58
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:80542501 original size:20 final size:20
Alignment explanation
Indices: 80542476--80542542 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
80542466 TTATGAATAC
80542476 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
80542496 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
80542516 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
80542536 ATCATGT
1 ATCATGT
80542543 ATATCATATC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:80543280 original size:27 final size:27
Alignment explanation
Indices: 80543250--80543314 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
80543240 GGGCATATTC
80543250 GTCATTTTACCATACAAGGG-TATTACA
1 GTCATTTTACCATACAAGGGCT-TTACA
* * * *
80543277 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACA
*
80543304 GTCTTTTTACC
1 GTCATTTTACC
80543315 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACA
Done.