Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 233 of 290
Found at i:80543398 original size:27 final size:27
Alignment explanation
Indices: 80543365--80543614 Score: 143
Period size: 27 Copynumber: 9.2 Consensus size: 27
80543355 TTGGTAAATC
*
80543365 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
** * *
80543392 TGTAAACTAATGGTATTTTTA-TAATTTT
1 TACAAACTAAGGGTA-TTTCAGTAA-TTT
* * *
80543420 TAGAAAGTTAAGGGTAATTCTA-TAATTGT
1 TACAAA-CTAAGGGTATTTC-AGTAATT-T
* **
80543449 GTA-AATC-AAGGGTATTTTGGTAATTT
1 -TACAAACTAAGGGTATTTCAGTAATTT
* *
80543475 TACAAATTGAGGGTATTTCAGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
* * *
80543502 CACAAAC-CAGTGGTATTTCGGTAATTT
1 TACAAACTAAG-GGTATTTCAGTAATTT
* **
80543529 TACAAACTAGGGGTATTTTGGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
* ** *
80543556 TACAAACTAGGGGTATTTTGGTAATTC
1 TACAAACTAAGGGTATTTCAGTAATTT
** *
80543583 TATCTTA-TAGGGGTATTTCAGTAATTT
1 TA-CAAACTAAGGGTATTTCAGTAATTT
*
80543610 CACAA
1 TACAA
80543615 TCGAGGGTAA
Statistics
Matches: 173, Mismatches: 38, Indels: 25
0.73 0.16 0.11
Matches are distributed among these distances:
25 2 0.01
26 6 0.03
27 131 0.76
28 18 0.10
29 14 0.08
30 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
TACAAACTAAGGGTATTTCAGTAATTT
Found at i:80543517 original size:54 final size:54
Alignment explanation
Indices: 80543458--80543614 Score: 183
Period size: 54 Copynumber: 2.9 Consensus size: 54
80543448 TGTAAATCAA
80543458 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAG
* * * ** * *
80543512 TGGTATTTCGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCAGTAATTTCACAAACCAG
* ** *
80543566 GGGTATTTTGGTAATTCTATCTTATAG-GGGTATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTA-CAAATTGAGGGTATTTCAGTAATTTCACAA
80543615 TCGAGGGTAA
Statistics
Matches: 83, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
53 1 0.01
54 80 0.96
55 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAG
Found at i:80543647 original size:27 final size:27
Alignment explanation
Indices: 80543613--80543715 Score: 152
Period size: 27 Copynumber: 3.8 Consensus size: 27
80543603 GTAATTTCAC
80543613 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
80543640 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
80543667 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
80543694 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAACGGTAATT
80543716 CTACAAATCG
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.40, C:0.06, G:0.24, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:80543687 original size:54 final size:54
Alignment explanation
Indices: 80543613--80543813 Score: 172
Period size: 54 Copynumber: 3.9 Consensus size: 54
80543603 GTAATTTCAC
* * * *
80543613 AATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTA
* **
80543667 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTA
* * *** * *
80543721 AATCGAGAGCATTTCAGTAATT-TGGTAAA-C-----T-AAA--GT-ATTTTATA
1 AATCGAGGGTAAAACAGTAATTCT-ATAAATCGAGGGTAAAATGGTAATTTTGTA
* *
80543765 AATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATT
80543814 CTACAAATCG
Statistics
Matches: 112, Mismatches: 23, Indels: 24
0.70 0.14 0.15
Matches are distributed among these distances:
44 25 0.22
45 4 0.04
47 3 0.03
48 1 0.01
50 1 0.01
51 3 0.03
53 4 0.04
54 71 0.63
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTA
Found at i:80543716 original size:27 final size:27
Alignment explanation
Indices: 80543613--80543727 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 27
80543603 GTAATTTCAC
* *
80543613 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
80543640 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
80543667 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
80543694 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
80543721 AATCGAG
1 AATCGAG
80543728 AGCATTTCAG
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:80543791 original size:27 final size:27
Alignment explanation
Indices: 80543761--80543825 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
80543751 TAAAGTATTT
*
80543761 TATAAATCGAGGGTGAAACGGTAATTC
1 TATAAATCGAGGGTAAAACGGTAATTC
*
80543788 TATAAATCGAGGGTAAAATGGTAATTC
1 TATAAATCGAGGGTAAAACGGTAATTC
*
80543815 TACAAATCGAG
1 TATAAATCGAG
80543826 AGCATTTCAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (27 bp):
TATAAATCGAGGGTAAAACGGTAATTC
Found at i:80543828 original size:98 final size:98
Alignment explanation
Indices: 80543659--80543857 Score: 371
Period size: 98 Copynumber: 2.0 Consensus size: 98
80543649 TAAAATGGTA
*
80543659 ATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAAT
1 ATTTTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAAT
80543724 CGAGAGCATTTCAGTAATTTGGTAAACTAAAGT
66 CGAGAGCATTTCAGTAATTTGGTAAACTAAAGT
* *
80543757 ATTTTATAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAAT
1 ATTTTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAAT
80543822 CGAGAGCATTTCAGTAATTTGGTAAACTAAAGT
66 CGAGAGCATTTCAGTAATTTGGTAAACTAAAGT
80543855 ATT
1 ATT
80543858 CTAAACAGAA
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 98 1.00
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (98 bp):
ATTTTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAAT
CGAGAGCATTTCAGTAATTTGGTAAACTAAAGT
Found at i:80544995 original size:25 final size:25
Alignment explanation
Indices: 80544967--80545033 Score: 134
Period size: 25 Copynumber: 2.7 Consensus size: 25
80544957 TTATTAAACA
80544967 AATGACCAAAATGCCCTTAAGGTCT
1 AATGACCAAAATGCCCTTAAGGTCT
80544992 AATGACCAAAATGCCCTTAAGGTCT
1 AATGACCAAAATGCCCTTAAGGTCT
80545017 AATGACCAAAATGCCCT
1 AATGACCAAAATGCCCT
80545034 AAAGCCTTTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.22
Consensus pattern (25 bp):
AATGACCAAAATGCCCTTAAGGTCT
Found at i:80546472 original size:75 final size:75
Alignment explanation
Indices: 80546387--80546537 Score: 284
Period size: 75 Copynumber: 2.0 Consensus size: 75
80546377 GGTTTTTTTT
*
80546387 TTTTTTAAATTCTAGCTTGTTTTAGGTTAATCATCATGTTTCTTACTTAGGCCATGTTAAAATTT
1 TTTTTTAAATTATAGCTTGTTTTAGGTTAATCATCATGTTTCTTACTTAGGCCATGTTAAAATTT
80546452 TGGATCTGGG
66 TGGATCTGGG
80546462 TTTTTTAAATTATAGCTTGTTTTAGGTTAATCATCATGTTTCTTACTTAGGCCATGTTAAAATTT
1 TTTTTTAAATTATAGCTTGTTTTAGGTTAATCATCATGTTTCTTACTTAGGCCATGTTAAAATTT
*
80546527 TGGATTTGGG
66 TGGATCTGGG
80546537 T
1 T
80546538 GGTGAATAGA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.23, C:0.11, G:0.17, T:0.49
Consensus pattern (75 bp):
TTTTTTAAATTATAGCTTGTTTTAGGTTAATCATCATGTTTCTTACTTAGGCCATGTTAAAATTT
TGGATCTGGG
Found at i:80547907 original size:40 final size:40
Alignment explanation
Indices: 80547852--80547938 Score: 138
Period size: 40 Copynumber: 2.2 Consensus size: 40
80547842 ATTTGATGTG
*
80547852 TATCCAGGCTTAAAGACCCGCAGGCTATAAGCTGGAATTA
1 TATCCAGGCTTAAAGACCCACAGGCTATAAGCTGGAATTA
* *
80547892 TATCCGGGCTTAAAGACCCACAGGCTATATGCTGGAATTA
1 TATCCAGGCTTAAAGACCCACAGGCTATAAGCTGGAATTA
*
80547932 TACCCAG
1 TATCCAG
80547939 AAGGTCCGCA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (40 bp):
TATCCAGGCTTAAAGACCCACAGGCTATAAGCTGGAATTA
Found at i:80547960 original size:35 final size:37
Alignment explanation
Indices: 80547912--80548002 Score: 114
Period size: 39 Copynumber: 2.5 Consensus size: 37
80547902 TAAAGACCCA
*
80547912 CAGGCTATATGCTGGAATTAT-ACC-CAGAAGGTCCG
1 CAGGCTATGTGCTGGAATTATAACCGCAGAAGGTCCG
*
80547947 CAGGCTATGTGCTGGAATTATAACCGGACTGAAGGTCCG
1 CAGGCTATGTGCTGGAATTATAACC-G-CAGAAGGTCCG
* *
80547986 CAGGCTACGCGCTGGAA
1 CAGGCTATGTGCTGGAA
80548003 ATATGTCCGG
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
35 20 0.42
36 3 0.06
39 25 0.52
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (37 bp):
CAGGCTATGTGCTGGAATTATAACCGCAGAAGGTCCG
Found at i:80547989 original size:39 final size:38
Alignment explanation
Indices: 80547869--80547992 Score: 128
Period size: 35 Copynumber: 3.3 Consensus size: 38
80547859 GCTTAAAGAC
* * * **
80547869 CCGCAGGCTATAAGCTGGAATTATATCCGGGCTTAAAGAC
1 CCGCAGGCTATATGCTGGAATTATAACC-GGC-TGAAGGT
* *
80547909 CCACAGGCTATATGCTGGAATTAT-ACC--CAGAAGGT
1 CCGCAGGCTATATGCTGGAATTATAACCGGCTGAAGGT
*
80547944 CCGCAGGCTATGTGCTGGAATTATAACCGGACTGAAGGT
1 CCGCAGGCTATATGCTGGAATTATAACCGG-CTGAAGGT
80547983 CCGCAGGCTA
1 CCGCAGGCTA
80547993 CGCGCTGGAA
Statistics
Matches: 70, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
35 25 0.36
36 4 0.06
39 19 0.27
40 22 0.31
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (38 bp):
CCGCAGGCTATATGCTGGAATTATAACCGGCTGAAGGT
Found at i:80555806 original size:40 final size:40
Alignment explanation
Indices: 80555751--80555882 Score: 176
Period size: 40 Copynumber: 3.3 Consensus size: 40
80555741 ATTTGATGTG
*
80555751 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCGGACTTAAAGACCCGCAGGCTATATGCTGGAATTA
* *
80555791 TATCCGGGCTTAAAGACCCACAGGCTATATGCTGGAATTA
1 TATCCGGACTTAAAGACCCGCAGGCTATATGCTGGAATTA
* ** * *
80555831 TACCCGGACTT-AAGGTCCGCAGGCTATGTGCTGAAATTA
1 TATCCGGACTTAAAGACCCGCAGGCTATATGCTGGAATTA
*
80555870 TAACCGGACTTAA
1 TATCCGGACTTAA
80555883 GGTCCGTAGG
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 33 0.40
40 49 0.60
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (40 bp):
TATCCGGACTTAAAGACCCGCAGGCTATATGCTGGAATTA
Found at i:80555869 original size:39 final size:39
Alignment explanation
Indices: 80555768--80555895 Score: 166
Period size: 39 Copynumber: 3.3 Consensus size: 39
80555758 GCTTAAAGAC
* * **
80555768 CCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGAC
1 CCGCAGGCTATATGCTGGAATTATAACCGGACTT-AAGGT
* *
80555808 CCACAGGCTATATGCTGGAATTATACCCGGACTTAAGGT
1 CCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGT
* *
80555847 CCGCAGGCTATGTGCTGAAATTATAACCGGACTTAAGGT
1 CCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGT
*
80555886 CCGTAGGCTA
1 CCGCAGGCTA
80555896 CGCGTTGGAA
Statistics
Matches: 78, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 47 0.60
40 31 0.40
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (39 bp):
CCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGT
Found at i:80565404 original size:39 final size:40
Alignment explanation
Indices: 80565200--80565422 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
80565190 TTGAATGCTG
* * * * *
80565200 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
80565240 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
80565280 TCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
80565320 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
80565360 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
80565399 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
80565423 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 35 0.22
40 117 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:80565442 original size:79 final size:80
Alignment explanation
Indices: 80565275--80565457 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
80565265 GTGCGAGATA
* * *
80565275 CTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
80565340 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
80565355 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
80565419 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
80565434 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
80565458 TACGTGAATT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:80570145 original size:22 final size:19
Alignment explanation
Indices: 80570120--80570161 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
80570110 TGATAATCAT
80570120 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
80570142 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
80570161 T
1 T
80570162 CAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:80571848 original size:13 final size:13
Alignment explanation
Indices: 80571830--80571856 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80571820 TTCTACAATA
80571830 ATGAGTTGAAGAG
1 ATGAGTTGAAGAG
80571843 ATGAGTTGAAGAG
1 ATGAGTTGAAGAG
80571856 A
1 A
80571857 GCGAGGATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.37, T:0.22
Consensus pattern (13 bp):
ATGAGTTGAAGAG
Found at i:80583659 original size:52 final size:52
Alignment explanation
Indices: 80583581--80583683 Score: 188
Period size: 52 Copynumber: 2.0 Consensus size: 52
80583571 GTGTTTAATT
*
80583581 TGGCTTTAAGGACTAAATCGTGTAAAGTGCGAAAGTTGCATTGTAATAGCTG
1 TGGCTTTAAGGACTAAATCGTGTAAAGTGCGAAAGTTGCATTCTAATAGCTG
*
80583633 TGGCTTTAAGGACTAAATCGTGTAAAGTGCGAAAGTTTCATTCTAATAGCT
1 TGGCTTTAAGGACTAAATCGTGTAAAGTGCGAAAGTTGCATTCTAATAGCT
80583684 AAAGGTATTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (52 bp):
TGGCTTTAAGGACTAAATCGTGTAAAGTGCGAAAGTTGCATTCTAATAGCTG
Found at i:80585823 original size:40 final size:40
Alignment explanation
Indices: 80585764--80585975 Score: 241
Period size: 40 Copynumber: 5.3 Consensus size: 40
80585754 CATTTGAATG
* * *
80585764 ATATCCAGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * *
80585804 TTATCCGGGCCAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
80585844 ATACCCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
80585884 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * *
80585924 ATATCCGGGATAAGACCCGAGGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
80585964 ATATCC-GGCTAA
1 ATATCCGGGCTAA
80585976 ATTCCTAAGA
Statistics
Matches: 142, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
39 9 0.06
40 128 0.90
41 5 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:80585912 original size:80 final size:80
Alignment explanation
Indices: 80585774--80585975 Score: 316
Period size: 80 Copynumber: 2.5 Consensus size: 80
80585764 ATATCCAGGC
* *
80585774 TAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCCAAGACCCGAAGGCATTTGTGCGAG
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
80585839 TTGCTATACCCGGGA
66 TTGATATACCCGGGA
80585854 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
80585919 TTGATATATCCGGGA
66 TTGATATACCCGGGA
* * * * *
80585934 TAAGACCCGAGGGCATTTGTGCTTGTGGTTATATCC-GGCTAA
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
80585976 ATTCCTAAGA
Statistics
Matches: 113, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 6 0.05
80 107 0.95
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (80 bp):
TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
TTGATATACCCGGGA
Found at i:80595570 original size:40 final size:39
Alignment explanation
Indices: 80595486--80595673 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 39
80595476 TTGAATGATG
* * * *
80595486 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
80595526 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
80595566 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
80595605 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
80595646 T-CGGGCTAAGTCCTGAAGGCATTTGTGC
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGC
80595674 ATATGAAATT
Statistics
Matches: 129, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 37 0.29
40 81 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80595622 original size:79 final size:82
Alignment explanation
Indices: 80595486--80595673 Score: 244
Period size: 79 Copynumber: 2.4 Consensus size: 82
80595476 TTGAATGATG
*
80595486 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
80595550 TGTGCGAGATACTA-AT
66 TGTGCGAGATACTATAA
* * * **
80595566 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
80595628 TTGTGCGAGTTACTATAA
65 TTGTGCGAGATACTATAA
*
80595646 T-CGGGCTAAGTCCTGAAGGCATTTGTGC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC
80595674 ATATGAAATT
Statistics
Matches: 95, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.61
80 36 0.38
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATAA
Found at i:80599756 original size:47 final size:47
Alignment explanation
Indices: 80599634--80599757 Score: 169
Period size: 47 Copynumber: 2.6 Consensus size: 47
80599624 TTAGGATTTT
* * * *
80599634 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACGTGTATATATGTGACAAGGCAGAATGGCCA
* *
80599681 ATGTGATGAATGTGAACATGCATATATGTGACAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACGTGTATATATGTGACAAGGCAGAATGGCCA
*
80599728 ATGTGATGAACGTGGAA-GTGTATATATGTG
1 ATGTGATGAATGT-GAACGTGTATATATGTG
80599758 GTAAAGCCGA
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
47 64 0.96
48 3 0.04
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACGTGTATATATGTGACAAGGCAGAATGGCCA
Found at i:80599838 original size:46 final size:46
Alignment explanation
Indices: 80599753--80599841 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
80599743 AAGTGTATAT
* * *
80599753 ATGTGGTAAAGCCGAACGGCTAATGCGAAACGTGTATGAGATGGAC
1 ATGTGGTAAAGCCAAACGGCTAATGCGAAACATGGATGAGATGGAC
* * * *
80599799 ATGTGGTAAAGCCAAATGGCTAATGTGAGATATGGATGAGATG
1 ATGTGGTAAAGCCAAACGGCTAATGCGAAACATGGATGAGATG
80599842 TGTATATATA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.34, C:0.11, G:0.33, T:0.22
Consensus pattern (46 bp):
ATGTGGTAAAGCCAAACGGCTAATGCGAAACATGGATGAGATGGAC
Found at i:80602456 original size:42 final size:42
Alignment explanation
Indices: 80602397--80602633 Score: 456
Period size: 42 Copynumber: 5.6 Consensus size: 42
80602387 ACATGACATC
*
80602397 GGCCTTAATATGTGAGCCAGTGTAAGACCTTGTTTGGATCAT
1 GGCCTCAATATGTGAGCCAGTGTAAGACCTTGTTTGGATCAT
80602439 GGCCTCAATATGTGAGCCAGTGTAAGACCTTGTTTGGATCAT
1 GGCCTCAATATGTGAGCCAGTGTAAGACCTTGTTTGGATCAT
80602481 GGCCTCAATATGTGAGCCAGTGTAAGACCTTGTTTGGATCAT
1 GGCCTCAATATGTGAGCCAGTGTAAGACCTTGTTTGGATCAT
80602523 GGCCTCAATATGTGAGCCAGTGTAAGACCTTGTTTGGATCAT
1 GGCCTCAATATGTGAGCCAGTGTAAGACCTTGTTTGGATCAT
80602565 GGCCTCAATATGTGAGCCAGTGTAAGACCTTGTTTGGATCAT
1 GGCCTCAATATGTGAGCCAGTGTAAGACCTTGTTTGGATCAT
*
80602607 GGCCTCAATATGTGAGCCAATGTAAGA
1 GGCCTCAATATGTGAGCCAGTGTAAGA
80602634 TTATGTCTGG
Statistics
Matches: 193, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 193 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (42 bp):
GGCCTCAATATGTGAGCCAGTGTAAGACCTTGTTTGGATCAT
Found at i:80608343 original size:47 final size:47
Alignment explanation
Indices: 80608294--80609206 Score: 1709
Period size: 47 Copynumber: 19.4 Consensus size: 47
80608284 CTTCGGGACT
* * * * * *
80608294 TATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCT
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608341 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608388 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608435 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608482 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608529 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608576 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608623 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608670 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608717 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608764 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608811 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608858 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608905 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608952 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80608999 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
80609046 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
*
80609093 TATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
* * *
80609140 TATCACATATATATATACTTTCACATTCATCACATTGGCCACTCGGCCC
1 TATCAC--ATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
*
80609189 TATCACATATATATACTT
1 TATCACATATATACACTT
80609207 GTACATCAAT
Statistics
Matches: 855, Mismatches: 9, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
47 810 0.95
49 45 0.05
ACGTcount: A:0.26, C:0.32, G:0.10, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACGTTGGTCACTCGGCCC
Found at i:80612365 original size:8 final size:8
Alignment explanation
Indices: 80612350--80612390 Score: 66
Period size: 8 Copynumber: 5.2 Consensus size: 8
80612340 ATGAATCGGC
80612350 AAGCCGAA
1 AAGCCGAA
*
80612358 ATGCCGAA
1 AAGCCGAA
80612366 AAGCCGAA
1 AAGCCGAA
80612374 AAGCCGAA
1 AAGCCGAA
80612382 AAGCC-AA
1 AAGCCGAA
80612389 AA
1 AA
80612391 TACTGAAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
7 4 0.13
8 27 0.87
ACGTcount: A:0.51, C:0.24, G:0.22, T:0.02
Consensus pattern (8 bp):
AAGCCGAA
Found at i:80612371 original size:16 final size:16
Alignment explanation
Indices: 80612350--80612406 Score: 69
Period size: 16 Copynumber: 3.6 Consensus size: 16
80612340 ATGAATCGGC
80612350 AAGCCGAAATGCCGAA
1 AAGCCGAAATGCCGAA
*
80612366 AAGCCGAAAAGCCGAA
1 AAGCCGAAATGCCGAA
* * *
80612382 AAGCCAAAATACTGAA
1 AAGCCGAAATGCCGAA
*
80612398 AAGTCGAAA
1 AAGCCGAAA
80612407 GTTAGGCTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.51, C:0.21, G:0.21, T:0.07
Consensus pattern (16 bp):
AAGCCGAAATGCCGAA
Found at i:80612548 original size:18 final size:19
Alignment explanation
Indices: 80612513--80612550 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
80612503 CGAATTGGCC
80612513 AAATGGGCCAGAATGGGCT
1 AAATGGGCCAGAATGGGCT
*
80612532 AAATGGGCCCG-ATGGGCT
1 AAATGGGCCAGAATGGGCT
80612550 A
1 A
80612551 TTGGGCCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.29, C:0.18, G:0.37, T:0.16
Consensus pattern (19 bp):
AAATGGGCCAGAATGGGCT
Found at i:80612662 original size:29 final size:29
Alignment explanation
Indices: 80612617--80612693 Score: 111
Period size: 29 Copynumber: 2.7 Consensus size: 29
80612607 GTGAGCATGA
* *
80612617 ATATGCATGTGATTTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
80612646 ATATGAATGTGAATTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* *
80612675 ATATAAATGAG-ATTGGGCC
1 ATATGAATGTGAATTGGGCC
80612694 AAGTGGGTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 8 0.18
29 36 0.82
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTGATGGGCC
Found at i:80615525 original size:96 final size:96
Alignment explanation
Indices: 80615361--80615691 Score: 446
Period size: 96 Copynumber: 3.4 Consensus size: 96
80615351 ATACTAGGGT
* * *** *
80615361 TATGAGAGCTAGTGTAAGACCATGTCTGGGAAATGACATTAACCTTAATATATGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATATGAGCCAGTGTAA
* * *
80615426 GACCATTTTTGGAGCATGGCATCGGCACTGA
66 GACCATGTTTGGAACATGGCATCGGCATTGA
* * *
80615457 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGATCCAGTATAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATATGAGCCAGTGTAA
*
80615522 GACCATGTTTGGAACATGGCATCGACATTGA
66 GACCATGTTTGGAACATGGCATCGGCATTGA
* * *
80615553 TATGAGAGCTAGTGTAAGATCATGTCTGGGACATGGCATTGGCCTCAATATATGAGCCAGCGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATATGAGCCAGTGTAA
* * * *
80615618 GTCCATGTTTGGAACATGCCATCAGCATTGT
66 GACCATGTTTGGAACATGGCATCGGCATTGA
* * * *
80615649 TATGTGAGCCAGTGCAAGACCATGTCCGGGACATGGCATCGGC
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
80615692 ATTTCACCTT
Statistics
Matches: 205, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 205 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (96 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATATGAGCCAGTGTAA
GACCATGTTTGGAACATGGCATCGGCATTGA
Found at i:80615694 original size:48 final size:48
Alignment explanation
Indices: 80615361--80615694 Score: 292
Period size: 48 Copynumber: 7.0 Consensus size: 48
80615351 ATACTAGGGT
* * * * *** * *
80615361 TATGAGAGCTAGTGTAAGACCATGTCTGGGAAATGACATTAACCTTAA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * *
80615409 TATATGAGCCAGTGTAAGACCAT-TTTTGGAGCATGGCATCGGCACTGA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGA-CATGGCATCGGCATTGA
* * * **
80615457 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * * *
80615505 TATGTGATCCAGTATAAGACCATGTTTGGAACATGGCATCGACATTGA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * * * **
80615553 TATGAGAGCTAGTGTAAGATCATGTCTGGGACATGGCATTGGCCTCAA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * * * * * *
80615601 TATATGAGCCAGCGTAAGTCCATGTTTGGAACATGCCATCAGCATTGT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* *
80615649 TATGTGAGCCAGTGCAAGACCATGTCCGGGACATGGCATCGGCATT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
80615695 TCACCTTTTT
Statistics
Matches: 216, Mismatches: 68, Indels: 4
0.75 0.24 0.01
Matches are distributed among these distances:
47 5 0.02
48 206 0.95
49 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
Found at i:80617626 original size:19 final size:19
Alignment explanation
Indices: 80617599--80617637 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
80617589 AACTCCCTCA
*
80617599 ACCCGATCCAATTAACTGG
1 ACCCAATCCAATTAACTGG
*
80617618 ACCCAATCCAATTAATTGG
1 ACCCAATCCAATTAACTGG
80617637 A
1 A
80617638 TCCAGATCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (19 bp):
ACCCAATCCAATTAACTGG
Found at i:80620070 original size:24 final size:24
Alignment explanation
Indices: 80620042--80620140 Score: 75
Period size: 24 Copynumber: 4.3 Consensus size: 24
80620032 AGCTCCTATA
80620042 TCAGCTCGTAAGAGCTTACCGTTT
1 TCAGCTCGTAAGAGCTTACCGTTT
* **
80620066 TCAGCTCATTGGAGCTTACCGTTT
1 TCAGCTCGTAAGAGCTTACCGTTT
* * *
80620090 T-AACTCTTATGAGCTTA---TTAT
1 TCAGCTCGTAAGAGCTTACCGTT-T
*
80620111 TCAGCTCG-ATAGAGCTTACGGTTT
1 TCAGCTCGTA-AGAGCTTACCGTTT
80620135 T-AGCTC
1 TCAGCTC
80620141 AATAAAGTTT
Statistics
Matches: 59, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
20 2 0.03
21 3 0.05
22 11 0.19
23 17 0.29
24 24 0.41
25 2 0.03
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.37
Consensus pattern (24 bp):
TCAGCTCGTAAGAGCTTACCGTTT
Found at i:80628253 original size:43 final size:43
Alignment explanation
Indices: 80628104--80628258 Score: 120
Period size: 43 Copynumber: 3.6 Consensus size: 43
80628094 GATTACCGAG
* * **
80628104 ATGAGATTACATGTAAGATCATGTCTGGGACATTGGCATTCTTT
1 ATGAGATTACATATAAGACCATGTCTGGGACATTGGCA-TCGAT
* ** * *
80628148 A-GTGATTACGCATAA-ACCATGTCTGGGACATT-TCTATCGGT
1 ATGAGATTACATATAAGACCATGTCTGGGACATTGGC-ATCGAT
* * * *
80628189 AT-ATGATTTCGTGTAACACCATGTCTGGGACATTGGCATCGAT
1 ATGA-GATTACATATAAGACCATGTCTGGGACATTGGCATCGAT
* *
80628232 ATGAGATAACATATAAGACCATATCTG
1 ATGAGATTACATATAAGACCATGTCTG
80628259 AGATATGGCA
Statistics
Matches: 85, Mismatches: 20, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
41 5 0.06
42 26 0.31
43 51 0.60
44 3 0.04
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (43 bp):
ATGAGATTACATATAAGACCATGTCTGGGACATTGGCATCGAT
Found at i:80639914 original size:47 final size:47
Alignment explanation
Indices: 80639856--80640344 Score: 906
Period size: 47 Copynumber: 10.4 Consensus size: 47
80639846 CAGCCAAGAC
80639856 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
80639903 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
80639950 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
80639997 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
80640044 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
80640091 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
80640138 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
80640185 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
80640232 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
80640279 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
80640326 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
80640345 TCCCGAAGGG
Statistics
Matches: 432, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 432 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:80640519 original size:37 final size:37
Alignment explanation
Indices: 80640463--80640541 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
80640453 CCGAGCTCTA
* * *
80640463 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
80640500 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
80640537 AAGAC
1 AAGAC
80640542 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:80646318 original size:90 final size:90
Alignment explanation
Indices: 80646165--80646352 Score: 376
Period size: 90 Copynumber: 2.1 Consensus size: 90
80646155 GAATGCCAGT
80646165 CAGGCTGGTACACAGCCTAGCACACAGTCTGGCACAGGGGCGTGTGTAGCTATTTTGAGAGTTAC
1 CAGGCTGGTACACAGCCTAGCACACAGTCTGGCACAGGGGCGTGTGTAGCTATTTTGAGAGTTAC
80646230 ACGGCCTGGCACACGAGTGACGACA
66 ACGGCCTGGCACACGAGTGACGACA
80646255 CAGGCTGGTACACAGCCTAGCACACAGTCTGGCACAGGGGCGTGTGTAGCTATTTTGAGAGTTAC
1 CAGGCTGGTACACAGCCTAGCACACAGTCTGGCACAGGGGCGTGTGTAGCTATTTTGAGAGTTAC
80646320 ACGGCCTGGCACACGAGTGACGACA
66 ACGGCCTGGCACACGAGTGACGACA
80646345 CAGGCTGG
1 CAGGCTGG
80646353 GACATGGTCG
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 98 1.00
ACGTcount: A:0.24, C:0.26, G:0.32, T:0.19
Consensus pattern (90 bp):
CAGGCTGGTACACAGCCTAGCACACAGTCTGGCACAGGGGCGTGTGTAGCTATTTTGAGAGTTAC
ACGGCCTGGCACACGAGTGACGACA
Found at i:80647132 original size:30 final size:30
Alignment explanation
Indices: 80647088--80647145 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
80647078 ACTTAACAAG
80647088 CAAATGCCTCTAAAATAATAACAAAATTTA
1 CAAATGCCTCTAAAATAATAACAAAATTTA
* *
80647118 CAAATGTCTTTAAAATAATAACAAAATT
1 CAAATGCCTCTAAAATAATAACAAAATT
80647146 AATAATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.53, C:0.14, G:0.03, T:0.29
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTTA
Found at i:80649416 original size:19 final size:19
Alignment explanation
Indices: 80649377--80649416 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
80649367 TTTGGGCTCC
*
80649377 CATGTCCAATTTACAATTT
1 CATGTCCAATTTACAAGTT
*
80649396 CATGTCCAATTTTCAAGTT
1 CATGTCCAATTTACAAGTT
80649415 CA
1 CA
80649417 ATTACCCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (19 bp):
CATGTCCAATTTACAAGTT
Found at i:80656916 original size:21 final size:21
Alignment explanation
Indices: 80656892--80656940 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
80656882 ACGACCTGTA
*
80656892 GCACGGGTGTGCTTTAGGGTC
1 GCACGGGTGTGCCTTAGGGTC
80656913 GCACGGGTGTGCCTTAGGGTC
1 GCACGGGTGTGCCTTAGGGTC
*
80656934 ACACGGG
1 GCACGGG
80656941 CGTGTCCCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.12, C:0.22, G:0.43, T:0.22
Consensus pattern (21 bp):
GCACGGGTGTGCCTTAGGGTC
Found at i:80667919 original size:27 final size:27
Alignment explanation
Indices: 80667814--80667920 Score: 94
Period size: 27 Copynumber: 4.0 Consensus size: 27
80667804 ATTTTTTGGC
*
80667814 GCAATATGAAAGGAAAGCCTTTGT-GG
1 GCAATATGAAAGGAATGCCTTTGTAGG
* * * *
80667840 TGCAATATAAAAGAAATGTC-TT-TATG
1 -GCAATATGAAAGGAATGCCTTTGTAGG
* *
80667866 GCAATTTATTAAAGGAATGCTTTTGTAGG
1 GCAA--TATGAAAGGAATGCCTTTGTAGG
*
80667895 GCAATATGAAAGGAACGCCTTTGTAG
1 GCAATATGAAAGGAATGCCTTTGTAG
80667921 TGAATCATGA
Statistics
Matches: 62, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
25 5 0.08
26 3 0.05
27 45 0.73
28 2 0.03
29 7 0.11
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.30
Consensus pattern (27 bp):
GCAATATGAAAGGAATGCCTTTGTAGG
Found at i:80678668 original size:47 final size:47
Alignment explanation
Indices: 80678599--80678694 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
80678589 CGAGTCCTCA
80678599 AGCTCTGTGAGACAGGGAAAAAGAGAGGGGTAAGCATTTACATGCTT
1 AGCTCTGTGAGACAGGGAAAAAGAGAGGGGTAAGCATTTACATGCTT
*
80678646 AGCTCTGTGAGACAGGGAAAAAGAGAGGGGTAAGCATTTACATTCTT
1 AGCTCTGTGAGACAGGGAAAAAGAGAGGGGTAAGCATTTACATGCTT
80678693 AG
1 AG
80678695 TAAGCTCAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.34, C:0.12, G:0.31, T:0.22
Consensus pattern (47 bp):
AGCTCTGTGAGACAGGGAAAAAGAGAGGGGTAAGCATTTACATGCTT
Found at i:80686445 original size:40 final size:40
Alignment explanation
Indices: 80686390--80686540 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
80686380 GGATATAGCT
*
80686390 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATT-GAGTA
* * *
80686430 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATTGAGTA
* * * * *
80686470 ACTCACACAAATGCCTTCGGGAC-TTGCCTGGAACT-AGTC
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGG-ATTGAGTA
* * * *
80686509 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGG
80686541 TTATCGTCCA
Statistics
Matches: 92, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 28 0.30
40 62 0.67
41 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGGATTGAGTA
Found at i:80699145 original size:28 final size:28
Alignment explanation
Indices: 80699080--80699229 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
80699070 AAGATTGGCG
* * * *
80699080 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
80699109 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
80699137 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
80699165 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
80699193 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
80699220 -TGAGTGTGCG
1 CTAAGTGTGCG
80699230 GACTTAATAT
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
26 9 0.08
27 14 0.12
28 76 0.67
29 15 0.13
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:80701013 original size:22 final size:22
Alignment explanation
Indices: 80700962--80701009 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
80700952 GTAAATGATG
*
80700962 GATGCATTGAGTTATAATATGT
1 GATGCATTGAGTTATAAAATGT
80700984 GATGCATT-AGTTAGTAAAATGT
1 GATGCATTGAGTTA-TAAAATGT
80701006 -ATGC
1 GATGC
80701010 CATTTATGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.38
Consensus pattern (22 bp):
GATGCATTGAGTTATAAAATGT
Found at i:80701633 original size:40 final size:40
Alignment explanation
Indices: 80701576--80701780 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
80701566 TCGAATGATG
* * * *
80701576 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
80701616 TCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
** *
80701656 TCCGGGTTAAGTCCCGAGGGCATTTGTGCGAGTTACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
80701696 ACCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* * * **
80701736 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
80701776 TCCGG
1 TCCGG
80701781 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
39 4 0.03
40 127 0.91
41 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:80701709 original size:80 final size:82
Alignment explanation
Indices: 80701576--80701761 Score: 272
Period size: 80 Copynumber: 2.3 Consensus size: 82
80701566 TCGAATGATG
*
80701576 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATT
80701640 GGTGCGAGTTACTA-AA
66 GGTGCGAGTTACTATAA
* * * * *
80701656 TCCGGGTTAAGTCCCGAGGGCATTTGTGC-GAGTTACTATAACCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATT
*
80701720 TGTGCGAGTTACTATAA
66 GGTGCGAGTTACTATAA
*
80701737 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80701762 AACGAGTAGC
Statistics
Matches: 94, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 85 0.90
81 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATT
GGTGCGAGTTACTATAA
Found at i:80712899 original size:20 final size:20
Alignment explanation
Indices: 80712874--80712923 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
80712864 CTCCTTACCG
* *
80712874 ACCACCAAACGCACTACAAA
1 ACCACCAAACACACCACAAA
**
80712894 ACCACCATTCACACCACAAA
1 ACCACCAAACACACCACAAA
80712914 ACCACCAAAC
1 ACCACCAAAC
80712924 TCGGGGTATC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.48, C:0.44, G:0.02, T:0.06
Consensus pattern (20 bp):
ACCACCAAACACACCACAAA
Found at i:80714727 original size:75 final size:72
Alignment explanation
Indices: 80714542--80714788 Score: 259
Period size: 75 Copynumber: 3.4 Consensus size: 72
80714532 ATAAATATAC
* * * * * * *
80714542 ATATTATTGATTTAAAATATAGTATAATACAATATAAACAATTTTTTCA-TTTCTCGTAGATTGT
1 ATATTATTGATATAAAATACAATAGAATACAATACAAAC-ATTTTTTCATTTTTTTGTAGATTGT
80714606 AAATAAGT
65 AAATAAGT
* * *
80714614 ATATTATT--TAAAAAGCATACGATAGAATACAATGCAAAC-TTTTATTCCATTTTTTTGTAGAT
1 ATATTATTGATATAAA--ATACAATAGAATACAATACAAACATTTT-TT-CATTTTTTTGTAGAT
80714676 TGTAAATAAGTAT
62 TGTAAATAAG--T
* **
80714689 ATATTATTGATATAAAATACAATAGAATGCAATACAAACAATTTTTAAATTTTTTTTGTAGATTG
1 ATATTATTGATATAAAATACAATAGAATACAATACAAAC-ATTTTTTCA-TTTTTTTGTAGATTG
80714754 TAAATAAGT
64 TAAATAAGT
*
80714763 ATATTATTGATGTAAAATACAATAGA
1 ATATTATTGATATAAAATACAATAGA
80714789 GAAACTTTTT
Statistics
Matches: 146, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
70 8 0.05
71 2 0.01
72 27 0.18
73 20 0.14
74 26 0.18
75 30 0.21
76 24 0.16
77 9 0.06
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (72 bp):
ATATTATTGATATAAAATACAATAGAATACAATACAAACATTTTTTCATTTTTTTGTAGATTGTA
AATAAGT
Found at i:80719032 original size:50 final size:48
Alignment explanation
Indices: 80718967--80719133 Score: 168
Period size: 50 Copynumber: 3.5 Consensus size: 48
80718957 AAGGCTGACA
* * * *
80718967 CCATGTCCCAAACATGGTCTTACACT-AGCTCGCACATATCCGTGCCAATT
1 CCATGTCCCAGACATGGTCTTACACTGA-CAC-CAC-TATACGTGCCAATG
* *
80719017 CCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGACACCACTATACGTGCCAATG
* **
80719065 CCATG-CCCAGACATGGTCTTACACTGACA-CA-TCT-CGTAGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTGACACCACTATACGT-GCCAATG
80719110 -CATGTCCCAGACAT-GTCTTACACT
1 CCATGTCCCAGACATGGTCTTACACT
80719134 AGCTTACATC
Statistics
Matches: 105, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
44 17 0.16
45 17 0.16
46 1 0.01
47 24 0.23
48 16 0.15
49 2 0.02
50 27 0.26
51 1 0.01
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.26
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTGACACCACTATACGTGCCAATG
Found at i:80719084 original size:47 final size:48
Alignment explanation
Indices: 80718866--80719273 Score: 205
Period size: 47 Copynumber: 8.6 Consensus size: 48
80718856 GGTATAATGT
* * * * *
80718866 CGATGCCATGTCCCAGACATGGTCTTACATTTG-CTCATCCATCAAGT--
1 CGATGCCATGTCCCAGACATGGTCTTACA-CTGACACCTCTAT-ACGTGC
* *** *
80718913 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCAAG-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACCTCTAT-ACGTGC
* ** * * * *
80718962 TGACACCATGTCCCAAACATGGTCTTACACT-AGCTCGCACATATCCGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CAC-CTC-TATACGTGC
* *
80719012 CAATTCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGC
*
80719060 CGATGCCATG-CCCAGACATGGTCTTACACTGACACATC--T-CGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGT-GC
* * **
80719105 TGATG-CATGTCCCAGACAT-GTCTTACACT-AGCTTACATCTCGA-G-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-C--ACCTCTATACGTGC
* * *
80719151 CGATG-CATGTCCCAGACAT-GTCTTACACT-AGCTCTCGTCT-TA-ATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CAC-C-TCTATACGTGC
* * * * * * *
80719197 TGATGCCATATCCCAAACATGGTCTTACATTGGC-TCTC-ATAATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTAT-ACGT-GC
80719245 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
80719274 AGCCTACAAA
Statistics
Matches: 285, Mismatches: 49, Indels: 55
0.73 0.13 0.14
Matches are distributed among these distances:
43 1 0.00
44 19 0.07
45 20 0.07
46 59 0.21
47 82 0.29
48 39 0.14
49 32 0.11
50 32 0.11
51 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGC
Found at i:80719156 original size:46 final size:46
Alignment explanation
Indices: 80719058--80719281 Score: 185
Period size: 46 Copynumber: 4.8 Consensus size: 46
80719048 CTCTATACGT
80719058 GCCGATGCCATG-CCCAGACATGGTCTTACACT-GAC--ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTACATCTCG-AG
*
80719103 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
* ** *
80719149 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTTAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGAG
** * * * * * *
80719195 GTTGATGCCATATCCCAAACATGGTCTTACATTGGCTCT-CATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTCGAG
*
80719243 GCCGATGCATGTCCCAGACATGTCTTACACTAGCCTACA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACA
80719282 AATAACCCGA
Statistics
Matches: 145, Mismatches: 24, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
44 15 0.10
45 18 0.12
46 65 0.45
47 25 0.17
48 21 0.14
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
Found at i:80719641 original size:24 final size:24
Alignment explanation
Indices: 80719614--80719659 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
80719604 AAAATTGGGC
*
80719614 AAAATGACCATTTTGCCCCTAGTT
1 AAAATGACCATTTTACCCCTAGTT
*
80719638 AAAATGATCATTTTACCCCTAG
1 AAAATGACCATTTTACCCCTAG
80719660 GTCCAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.33
Consensus pattern (24 bp):
AAAATGACCATTTTACCCCTAGTT
Found at i:80726920 original size:48 final size:48
Alignment explanation
Indices: 80726693--80726923 Score: 196
Period size: 46 Copynumber: 4.9 Consensus size: 48
80726683 CATAGGGTAT
* * *
80726693 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTAACAACTC-TAT-
1 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGC-TCTCATCTC
* * * *
80726740 ACGTGCTGAAGCCATGTCCCAGACATGGTCTTACACTA--ACACATCTC
1 A-ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTC
* **
80726787 -GTAGCCAATG-CATGTCCCAGACAT-GTCTTACACT-G-TCTTACATCTC
1 AAT-GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-T-CATCTC
* * * *
80726833 GAGGCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCATCTC
1 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTC
* *
80726879 AATGCTGATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCAT
1 AATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
80726924 AATATGGCCG
Statistics
Matches: 153, Mismatches: 19, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
44 11 0.07
45 19 0.12
46 54 0.35
47 15 0.10
48 54 0.35
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (48 bp):
AATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTC
Found at i:80726937 original size:48 final size:46
Alignment explanation
Indices: 80726794--80726963 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 46
80726784 CTCGTAGCCA
* * *
80726794 ATGCATGTCCCAGACATGTCTTACACT-G-TCTTACATCTCGA-GGCCG
1 ATGCATGTCCCAAACATGTCTTACACTAGCTC-T-CATAT-AATGGCCG
* *
80726840 ATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTCAAT-GCTG
1 ATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAT-AATGGCCG
** *
80726886 ATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCATA-ATATGGCCG
1 ATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCATATA-ATGGCCG
* *
80726934 ATGCATGTCCCAAACATGCCTTATACTAGC
1 ATGCATGTCCCAAACATGTCTTACACTAGC
80726964 ACACAACTAA
Statistics
Matches: 104, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
46 50 0.48
47 28 0.27
48 26 0.25
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAAACATGTCTTACACTAGCTCTCATATAATGGCCG
Found at i:80740181 original size:40 final size:40
Alignment explanation
Indices: 80740124--80740233 Score: 177
Period size: 40 Copynumber: 2.8 Consensus size: 40
80740114 GACGACGATT
*
80740124 CGGGCTAAGTCCTGAAGGGCATTCGTGCC-AGTGTTATATC
1 CGGGCTAAGTCCCGAAGGGCATTCGTGCCGA-TGTTATATC
*
80740164 CGGGCTAAGTCCCGAAGGGTATTCGTGCCGATGTTATATC
1 CGGGCTAAGTCCCGAAGGGCATTCGTGCCGATGTTATATC
*
80740204 CGGGCTAAATCCCGAAGGGCATTCGTGCCG
1 CGGGCTAAGTCCCGAAGGGCATTCGTGCCG
80740234 GTGATGTGTA
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
40 64 0.98
41 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGGCATTCGTGCCGATGTTATATC
Found at i:80743728 original size:47 final size:47
Alignment explanation
Indices: 80743650--80743911 Score: 416
Period size: 47 Copynumber: 5.6 Consensus size: 47
80743640 CCCTTCGGGA
* * * * * *
80743650 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
80743697 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80743744 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80743791 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80743838 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80743885 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
80743912 TATTCAAATA
Statistics
Matches: 197, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 197 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:80754408 original size:43 final size:43
Alignment explanation
Indices: 80754346--80754599 Score: 280
Period size: 43 Copynumber: 5.9 Consensus size: 43
80754336 TTTATTTAAA
*
80754346 AAAACGCCGCTAAAGACCATGACCTTTAGTGGCGCTTTTCTTG
1 AAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTTG
* * *
80754389 CAAACGCCGCTAAAGACCATGACCTTTAGCGGCCCTTTT-TCAG
1 AAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCT-TG
* ** *
80754432 CAAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCTG
1 AAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTTG
* * * * *
80754475 AAAATGCCGCTAAAGACCATGACTTTTAGAGACGCTTTTCCTG
1 AAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTTG
* * *
80754518 AAAACGCCACTAAAG-CCATGA-CTTCTAACGGCGCTTTTTTTG
1 AAAACGCCGCTAAAGACCATGACCTT-TAGCGGCGCTTTTCTTG
* * * * *
80754560 AAAACACCACTAAAGACTATGACCTTTAGCGACACTTTTC
1 AAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTC
80754600 CCAAAACGCC
Statistics
Matches: 176, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.01
42 33 0.19
43 138 0.78
44 3 0.02
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (43 bp):
AAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTTG
Found at i:80754453 original size:86 final size:86
Alignment explanation
Indices: 80754346--80754609 Score: 309
Period size: 86 Copynumber: 3.1 Consensus size: 86
80754336 TTTATTTAAA
* * *
80754346 AAAACGCCGCTAAAGACCATGACCTTTAGTGGCGCTTTTCTTGCAAACGCCGCTAAAGACCATGA
1 AAAACGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTTTCTTGAAAACGCCGCTAAAGACCATGA
* *
80754411 CCTTTAGCGGCCCTTTTTCAG
66 CCTTTAGCGACCCTTTTCCAG
* * * *
80754432 CAAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCTGAAAATGCCGCTAAAGACCATGA
1 AAAACGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTTTCTTGAAAACGCCGCTAAAGACCATGA
* * * *
80754497 CTTTTAGAGACGCTTTTCCTG
66 CCTTTAGCGACCCTTTTCCAG
* * * * * *
80754518 AAAACGCCACTAAA-GCCATGA-CTTCTAACGGCGCTTTTTTTGAAAACACCACTAAAGACTATG
1 AAAACGCCGCTAAAGGCCATGACCTT-TAGCGGCGCTTTTCTTGAAAACGCCGCTAAAGACCATG
* *
80754581 ACCTTTAGCGACACTTTTCC-C
65 ACCTTTAGCGACCCTTTTCCAG
80754602 AAAACGCC
1 AAAACGCC
80754610 ACTATATAAT
Statistics
Matches: 150, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
84 11 0.07
85 54 0.36
86 85 0.57
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (86 bp):
AAAACGCCGCTAAAGGCCATGACCTTTAGCGGCGCTTTTCTTGAAAACGCCGCTAAAGACCATGA
CCTTTAGCGACCCTTTTCCAG
Found at i:80754573 original size:85 final size:84
Alignment explanation
Indices: 80754346--80754656 Score: 306
Period size: 86 Copynumber: 3.7 Consensus size: 84
80754336 TTTATTTAAA
* * *
80754346 AAAACGCCGCTAAAGACCATGACCTTTAGTGGCGCTTTTCTTGCAAACGCCGCTAAAGACCATGA
1 AAAACGCCACTAAAG-CCATGACCTTTAGCGGCGCTTTTCTTGAAAACGCCGCTAAAGACCATGA
* * *
80754411 CCTTTAGCGGCCCTTTTTCAG
65 CCTTTAGCGACAC-TTTTCCG
* * * * *
80754432 CAAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCTGAAAATGCCGCTAAAGACCATGA
1 AAAACGCCACTAAA-GCCATGACCTTTAGCGGCGCTTTTCTTGAAAACGCCGCTAAAGACCATGA
* * *
80754497 CTTTTAGAGACGCTTTTCCTG
65 CCTTTAGCGACACTTTTCC-G
* * * * *
80754518 AAAACGCCACTAAAGCCATGA-CTTCTAACGGCGCTTTTTTTGAAAACACCACTAAAGACTATGA
1 AAAACGCCACTAAAGCCATGACCTT-TAGCGGCGCTTTTCTTGAAAACGCCGCTAAAGACCATGA
*
80754582 CCTTTAGCGACACTTTTCCC
65 CCTTTAGCGACACTTTTCCG
* ** **
80754602 AAAACGCCACTATA-TAATAGACCTTTAGCAACGCTTTT-TT-ACAAACGCCGCTAAA
1 AAAACGCCACTAAAGCCAT-GACCTTTAGCGGCGCTTTTCTTGA-AAACGCCGCTAAA
80754657 AAATATAAAC
Statistics
Matches: 186, Mismatches: 33, Indels: 15
0.79 0.14 0.06
Matches are distributed among these distances:
82 1 0.01
83 15 0.08
84 28 0.15
85 62 0.33
86 79 0.42
87 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (84 bp):
AAAACGCCACTAAAGCCATGACCTTTAGCGGCGCTTTTCTTGAAAACGCCGCTAAAGACCATGAC
CTTTAGCGACACTTTTCCG
Found at i:80759727 original size:18 final size:19
Alignment explanation
Indices: 80759690--80759728 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
80759680 AAATCATATT
80759690 TATTATTTTCATATAAAAA
1 TATTATTTTCATATAAAAA
*
80759709 TATTATTTTGATA-AAAAA
1 TATTATTTTCATATAAAAA
80759727 TA
1 TA
80759729 AAAAAGATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TATTATTTTCATATAAAAA
Found at i:80760338 original size:24 final size:24
Alignment explanation
Indices: 80760310--80760358 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
80760300 CCAAAATAAC
*
80760310 AATTAATTTTTATATAAACTTTTA
1 AATTAATGTTTATATAAACTTTTA
80760334 AATTAATGTTTATATAAACTTTTA
1 AATTAATGTTTATATAAACTTTTA
80760358 A
1 A
80760359 CAAATATACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (24 bp):
AATTAATGTTTATATAAACTTTTA
Found at i:80761016 original size:42 final size:42
Alignment explanation
Indices: 80760977--80761105 Score: 158
Period size: 40 Copynumber: 3.2 Consensus size: 42
80760967 ACTTTTAGTG
* *
80760977 GCGTTTTACCAAAAGAGCCGCTAATGCTCTGTTTTTTTAGCA
1 GCGTTTTACCAAAAGCGCCGCTAATGCTCTGTATTTTTAGCA
* * *
80761019 GCATTTTACCAAAAGCGCCGCTAATG-TTTG-GTTTTTAGCA
1 GCGTTTTACCAAAAGCGCCGCTAATGCTCTGTATTTTTAGCA
* **
80761059 GCGGTTTACCAAAAGCGCCGCTAATGCTC--TATTTTTAGTG
1 GCGTTTTACCAAAAGCGCCGCTAATGCTCTGTATTTTTAGCA
80761099 GCGTTTT
1 GCGTTTT
80761106 TGGTAAAACA
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 46 0.62
41 4 0.05
42 24 0.32
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (42 bp):
GCGTTTTACCAAAAGCGCCGCTAATGCTCTGTATTTTTAGCA
Found at i:80766595 original size:41 final size:40
Alignment explanation
Indices: 80766542--80766835 Score: 255
Period size: 41 Copynumber: 7.2 Consensus size: 40
80766532 AGTCCGACTC
* *
80766542 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
* *
80766581 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACTAAGCT-CGGA
* *
80766621 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACTAAGCTCGG--A
*
80766666 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
* * *
80766705 TTAGACCACTGGCTCGAATGCCCTTCG-GAACTAAG-TCCGGTT
1 TTAGA-CACTGGCTCAAAAGCCCTTCGAG-ACTAAGCT-CGG-A
* *
80766747 TTA-ACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTAGACACTGGCTC--AAAAGCCCTTCGAGACTAAGCTCGG--A
*
80766790 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
80766829 TTTAGAC
1 -TTAGAC
80766836 CCCGATTAGC
Statistics
Matches: 209, Mismatches: 21, Indels: 48
0.75 0.08 0.17
Matches are distributed among these distances:
39 10 0.05
40 29 0.14
41 101 0.48
42 41 0.20
43 24 0.11
44 1 0.00
45 3 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
Found at i:80766675 original size:83 final size:82
Alignment explanation
Indices: 80766550--80766815 Score: 267
Period size: 83 Copynumber: 3.2 Consensus size: 82
80766540 TCTTAGCACC
* * * * *
80766550 GGCTCAAAAGCCCTTCGAGACCAAGCTCGG--ATTAGACTACTGGCTCGAAGGCCCTTCGGAACT
1 GGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG-C-ACTGGCTCAAAAGCCCTTCGGAACT
80766613 AAGTCCGGTTATGA-CACT
64 AAGTCCGGTTATGACCACT
80766631 GGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAAGCCCTTC-GAGAC
1 GGCTC--AAAAGCCCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAAGCCCTTCGGA-AC
*
80766695 CAAG-CTCGGATTA-GACCACT
63 TAAGTC-CGG-TTATGACCACT
* * * * * *
80766715 GGCTCGAATGCCCTTCGGAACTAAGTCCGGTT-TTAACACTGGCTCTAAAAAGCCCTTCGAAACT
1 GGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTC--AAAAGCCCTTCGGAACT
* * *
80766779 AAGTTCGGTTATTAGCACT
64 AAGTCCGGTTATGACCACT
80766798 GGCTCAAAAGCCCTTCGA
1 GGCTCAAAAGCCCTTCGA
80766816 GACCAAGCTC
Statistics
Matches: 153, Mismatches: 19, Indels: 24
0.78 0.10 0.12
Matches are distributed among these distances:
81 17 0.11
82 29 0.19
83 88 0.58
84 14 0.09
85 5 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (82 bp):
GGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAAGCCCTTCGGAACTAA
GTCCGGTTATGACCACT
Found at i:80766740 original size:124 final size:124
Alignment explanation
Indices: 80766542--80766836 Score: 536
Period size: 124 Copynumber: 2.4 Consensus size: 124
80766532 AGTCCGACTC
* *
80766542 TTAGCACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACTACTGGCTCGAAGGCCCTTC
1 TTAGCACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACCACTGGCTCGAAGGCCCTTC
*
80766607 GGAACTAAGTCCGGTTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
66 GGAACTAAGTCCGGTTATAACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
*
80766666 TTAGCACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACCACTGGCTCGAATGCCCTTC
1 TTAGCACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACCACTGGCTCGAAGGCCCTTC
*
80766731 GGAACTAAGTCCGGTTTTAACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
66 GGAACTAAGTCCGGTTATAACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
80766790 TTAGCACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTTAGACC
1 TTAGCACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA-TTAGACC
80766837 CCGATTAGCA
Statistics
Matches: 165, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
124 158 0.96
125 7 0.04
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (124 bp):
TTAGCACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACCACTGGCTCGAAGGCCCTTC
GGAACTAAGTCCGGTTATAACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
Found at i:80775072 original size:41 final size:40
Alignment explanation
Indices: 80775019--80775188 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
80775009 AGTCCGACTC
*
80775019 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
80775058 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
80775098 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
80775143 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
80775182 TTTAGAC
1 -TTAGAC
80775189 CCCGATTAGC
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 51 0.48
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:80780792 original size:20 final size:20
Alignment explanation
Indices: 80780763--80780807 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
80780753 AGCACATGTA
* *
80780763 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
80780783 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
80780803 TTCAT
1 TTCAT
80780808 TTTAGCCTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:80783054 original size:23 final size:22
Alignment explanation
Indices: 80783028--80783074 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
80783018 ATGTTAAGTT
80783028 TTGCAATCAAAGAAATGAGGTTG
1 TTGC-ATCAAAGAAATGAGGTTG
* *
80783051 TTGCATTAAAGAAATGGGGTTG
1 TTGCATCAAAGAAATGAGGTTG
80783073 TT
1 TT
80783075 TTTGTTTCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (22 bp):
TTGCATCAAAGAAATGAGGTTG
Found at i:80787468 original size:7 final size:7
Alignment explanation
Indices: 80787449--80787485 Score: 56
Period size: 7 Copynumber: 5.1 Consensus size: 7
80787439 TTAAGATCAT
80787449 GGGTTTAA
1 GGGTTT-A
80787457 GGGTTTA
1 GGGTTTA
80787464 GGGTTTA
1 GGGTTTA
*
80787471 AGGTTTA
1 GGGTTTA
80787478 GGGTTTA
1 GGGTTTA
80787485 G
1 G
80787486 TGTCTCAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 21 0.78
8 6 0.22
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.41
Consensus pattern (7 bp):
GGGTTTA
Found at i:80787475 original size:14 final size:15
Alignment explanation
Indices: 80787449--80787484 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
80787439 TTAAGATCAT
80787449 GGGTTTAAGGGTTTA
1 GGGTTTAAGGGTTTA
80787464 GGGTTTAA-GGTTTA
1 GGGTTTAAGGGTTTA
80787478 GGGTTTA
1 GGGTTTA
80787485 GTGTCTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.19, C:0.00, G:0.39, T:0.42
Consensus pattern (15 bp):
GGGTTTAAGGGTTTA
Found at i:80787497 original size:21 final size:21
Alignment explanation
Indices: 80787450--80787498 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
80787440 TAAGATCATG
*
80787450 GGTTTAAGGGTTTAGGGTTTAA
1 GGTTT-AGGGTTTAGGGTTCAA
*
80787472 GGTTTAGGGTTTAGTGTCTCAA
1 GGTTTAGGGTTTAGGGT-TCAA
80787494 -GTTTA
1 GGTTTA
80787499 AGGTATCGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.20, C:0.04, G:0.33, T:0.43
Consensus pattern (21 bp):
GGTTTAGGGTTTAGGGTTCAA
Found at i:80788236 original size:165 final size:164
Alignment explanation
Indices: 80787953--80788277 Score: 526
Period size: 165 Copynumber: 2.0 Consensus size: 164
80787943 TGGCTTAATG
80787953 TTAAAGGTATATATGTTTGTTTCATAAACAGTATAACATGTTTAAATGATACAAGGTTAGCATTT
1 TTAAAGGTATATATGTTTGTTTCATAAACAGTATAACATGTTTAAATGATACAAGGTTAGCATTT
* * * *
80788018 GACAACTAGTATGAATTAGTCAATTCTATTGCAATGTTGAATGGATTGATTTGCTACTTACTATA
66 GACAACTAGTATGAATTAGTCAATTCTATTACAATGTTGAAAGGATTGATTTGCTAATTACCATA
*
80788083 TGAATACTCTGATATGTAAATGATAATGGATTAA
131 TAAATACTCTGATATGTAAATGATAATGGATTAA
** ** *
80788117 TTAAAGGTATATATGTTTGTTTCATAAATGGTATAGGATGTTTAAATGATATAAGGTTAGGCATT
1 TTAAAGGTATATATGTTTGTTTCATAAACAGTATAACATGTTTAAATGATACAAGGTTA-GCATT
*
80788182 TGACAACTAGTATGAATTAGTCAATTTTATTACAATGTTGAAAAGG-TTGATTTGCTAATTACCA
65 TGACAACTAGTATGAATTAGTCAATTCTATTACAATGTTG-AAAGGATTGATTTGCTAATTACCA
80788246 TATAAATACTCTGATATGTAAATGATAATGGA
129 TATAAATACTCTGATATGTAAATGATAATGGA
80788278 ATTTCTTGGG
Statistics
Matches: 148, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
164 54 0.36
165 90 0.61
166 4 0.03
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.38
Consensus pattern (164 bp):
TTAAAGGTATATATGTTTGTTTCATAAACAGTATAACATGTTTAAATGATACAAGGTTAGCATTT
GACAACTAGTATGAATTAGTCAATTCTATTACAATGTTGAAAGGATTGATTTGCTAATTACCATA
TAAATACTCTGATATGTAAATGATAATGGATTAA
Found at i:80789360 original size:46 final size:46
Alignment explanation
Indices: 80789293--80789414 Score: 235
Period size: 46 Copynumber: 2.7 Consensus size: 46
80789283 CCGCCCCTAA
80789293 GTGAACTCGGACTCAACTCAACGAGCTCGGGCGGTCGCATCCATAG
1 GTGAACTCGGACTCAACTCAACGAGCTCGGGCGGTCGCATCCATAG
80789339 GTGAACTCGGACTCAACTCAACGAGCTCGGGCGGTCGCATCCATAG
1 GTGAACTCGGACTCAACTCAACGAGCTCGGGCGGTCGCATCCATAG
*
80789385 GTGAACTCGGACTCAACTCAACGAGTTCGG
1 GTGAACTCGGACTCAACTCAACGAGCTCGG
80789415 ATGCCCAAAT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.18
Consensus pattern (46 bp):
GTGAACTCGGACTCAACTCAACGAGCTCGGGCGGTCGCATCCATAG
Found at i:80791805 original size:46 final size:46
Alignment explanation
Indices: 80791747--80791967 Score: 204
Period size: 46 Copynumber: 4.8 Consensus size: 46
80791737 TCACTTGTGT
* *
80791747 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACTTTATGA-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTTGA-GAC
*
80791793 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-TA-TTGAGAC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACTTGAGAC
* * *
80791839 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATC-GTC-CTCGAGAC
1 GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTTGAGAC
* * * *
80791885 GTAAGCCAGTGTAAGACATGTATGGTACATGCATCGGCTAC--GAGAT
1 G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTTGAGAC
* *
80791931 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
80791968 TACAGATATG
Statistics
Matches: 146, Mismatches: 16, Indels: 26
0.78 0.09 0.14
Matches are distributed among these distances:
44 11 0.08
45 15 0.10
46 70 0.48
47 30 0.21
48 20 0.14
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTTGAGAC
Found at i:80797111 original size:17 final size:17
Alignment explanation
Indices: 80797089--80797123 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
80797079 GAAATCAGAT
*
80797089 CACTATGGATTTTGTGA
1 CACTATGGATCTTGTGA
80797106 CACTATGGATCTTGTGA
1 CACTATGGATCTTGTGA
80797123 C
1 C
80797124 GGGTTTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (17 bp):
CACTATGGATCTTGTGA
Found at i:80798991 original size:46 final size:46
Alignment explanation
Indices: 80798933--80799152 Score: 202
Period size: 46 Copynumber: 4.7 Consensus size: 46
80798923 TCACTTGTGT
* *
80798933 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACTTTATGA-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTTGA-GAC
*
80798979 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-TA-TTGAGAC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACTTGAGAC
* * *
80799025 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATC-GTC-CTCGAGAC
1 GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTTGAGAC
* * * *
80799071 GTAAGCCAGTGTAAGACATGTATGGTACATGCATCGGCTAC--GAGAT
1 G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTTGAGAC
* *
80799117 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
80799153 ATACAGATAT
Statistics
Matches: 145, Mismatches: 16, Indels: 26
0.78 0.09 0.14
Matches are distributed among these distances:
44 11 0.08
45 15 0.10
46 69 0.48
47 30 0.21
48 20 0.14
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACTTGAGAC
Found at i:80802263 original size:175 final size:175
Alignment explanation
Indices: 80801972--80802321 Score: 691
Period size: 175 Copynumber: 2.0 Consensus size: 175
80801962 CAGTGAGGTC
*
80801972 CGAGGGTAGAGCGCCTGTAAGAACTTACACTATTCGTGCCCATAAAGAGGCAGAATCTCTCGACG
1 CGAGGGTAGAGCACCTGTAAGAACTTACACTATTCGTGCCCATAAAGAGGCAGAATCTCTCGACG
80802037 TGATCACGGGTACCTTTTCTATCCATGAAATATCTGTTGTTGCTTTAATTGACCCGGGCTTTACC
66 TGATCACGGGTACCTTTTCTATCCATGAAATATCTGTTGTTGCTTTAATTGACCCGGGCTTTACC
80802102 CACTCTTATATTCGTATGGAATTGATACCTCGTATGAACGTGATA
131 CACTCTTATATTCGTATGGAATTGATACCTCGTATGAACGTGATA
80802147 CGAGGGTAGAGCACCTGTAAGAACTTACACTATTCGTGCCCATAAAGAGGCAGAATCTCTCGACG
1 CGAGGGTAGAGCACCTGTAAGAACTTACACTATTCGTGCCCATAAAGAGGCAGAATCTCTCGACG
80802212 TGATCACGGGTACCTTTTCTATCCATGAAATATCTGTTGTTGCTTTAATTGACCCGGGCTTTACC
66 TGATCACGGGTACCTTTTCTATCCATGAAATATCTGTTGTTGCTTTAATTGACCCGGGCTTTACC
80802277 CACTCTTATATTCGTATGGAATTGATACCTCGTATGAACGTGATA
131 CACTCTTATATTCGTATGGAATTGATACCTCGTATGAACGTGATA
80802322 GTAGAGTCCA
Statistics
Matches: 174, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
175 174 1.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (175 bp):
CGAGGGTAGAGCACCTGTAAGAACTTACACTATTCGTGCCCATAAAGAGGCAGAATCTCTCGACG
TGATCACGGGTACCTTTTCTATCCATGAAATATCTGTTGTTGCTTTAATTGACCCGGGCTTTACC
CACTCTTATATTCGTATGGAATTGATACCTCGTATGAACGTGATA
Found at i:80804469 original size:17 final size:17
Alignment explanation
Indices: 80804447--80804481 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
80804437 GAGATCAGAT
*
80804447 CACTATGGATTTTGTGA
1 CACTATGGATCTTGTGA
80804464 CACTATGGATCTTGTGA
1 CACTATGGATCTTGTGA
80804481 C
1 C
80804482 GGGTTTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (17 bp):
CACTATGGATCTTGTGA
Found at i:80806466 original size:46 final size:47
Alignment explanation
Indices: 80806295--80806514 Score: 188
Period size: 46 Copynumber: 4.7 Consensus size: 47
80806285 CTTGTGTGAG
*
80806295 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACG-AGT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGTA-CGAGACGTAGT
*
80806342 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATC-GTCCTCGAGACGTAAG-
1 -CTAGTGTAAGACCATGTCTGGGACATGGCATCGGT--ACGAGACGT-AGT
* * * * *
80806389 CCAGTGTAAGA-CATGTATGGTATAT-GCATCGGCTACGAGATGT-GT
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGG-TACGAGACGTAGT
* * *
80806434 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGTACAGATATGCTAGAA
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGTAC-GAGACG-TAG-T
* *
80806483 CTTGTGTAAGACCATGTCTGGGACATGACATC
1 CTAGTGTAAGACCATGTCTGGGACATGGCATC
80806515 AGCACCTGAC
Statistics
Matches: 143, Mismatches: 15, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
44 10 0.07
45 17 0.12
46 56 0.39
47 16 0.11
48 15 0.10
49 1 0.01
50 28 0.20
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGGTACGAGACGTAGT
Found at i:80809260 original size:30 final size:30
Alignment explanation
Indices: 80809226--80809285 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
80809216 ATTTAATACG
80809226 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
80809256 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
80809286 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:80815891 original size:44 final size:41
Alignment explanation
Indices: 80815800--80815880 Score: 117
Period size: 44 Copynumber: 1.9 Consensus size: 41
80815790 GCGAATTGGA
* *
80815800 ATAGCTTCGGTTATATGAGGCACTAAGTGTGTGATACCGAG
1 ATAGCTTCGGTTATATGAGGAACTAAGTGTGTGAGACCGAG
80815841 ATAGCTTCGGTTTAATATGATGGAACTAAGTGTGTGAGAC
1 ATAGCTTCGG-TT-ATATGA-GGAACTAAGTGTGTGAGAC
80815881 TGTTATAGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
41 10 0.29
42 2 0.06
43 6 0.17
44 17 0.49
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.31
Consensus pattern (41 bp):
ATAGCTTCGGTTATATGAGGAACTAAGTGTGTGAGACCGAG
Found at i:80817326 original size:40 final size:40
Alignment explanation
Indices: 80817279--80817522 Score: 409
Period size: 40 Copynumber: 6.1 Consensus size: 40
80817269 CGGGCTTTAA
** *
80817279 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
**
80817319 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
80817359 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
80817399 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
80817439 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80817479 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
80817519 CCGG
1 CCGG
80817523 TTATCATCCG
Statistics
Matches: 194, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 1 0.01
40 193 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80824515 original size:40 final size:40
Alignment explanation
Indices: 80824468--80824711 Score: 312
Period size: 40 Copynumber: 6.1 Consensus size: 40
80824458 CGGGCTTTAA
** * *
80824468 CCGGATATAGCCACTCGCTCAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** *
80824508 CCGGATATAGTAGTTCGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** *
80824548 CCGGATATAGTAGTTCGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80824588 CCAGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80824628 TCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
80824668 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGA
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
80824708 CCGG
1 CCGG
80824712 TTATCATCCG
Statistics
Matches: 184, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.01
40 183 0.99
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80873204 original size:13 final size:13
Alignment explanation
Indices: 80873186--80873236 Score: 74
Period size: 13 Copynumber: 4.2 Consensus size: 13
80873176 GGTTGTTTAT
80873186 TAAACTAATTAAC
1 TAAACTAATTAAC
80873199 TAAACTAA-T---
1 TAAACTAATTAAC
80873208 TAAACTAATTAAC
1 TAAACTAATTAAC
80873221 TAAACTAATTAAC
1 TAAACTAATTAAC
80873234 TAA
1 TAA
80873237 TTAAACTAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
9 8 0.24
10 1 0.03
12 1 0.03
13 24 0.71
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:80873211 original size:9 final size:9
Alignment explanation
Indices: 80873199--80873245 Score: 52
Period size: 9 Copynumber: 5.9 Consensus size: 9
80873189 ACTAATTAAC
80873199 TAAACTAAT
1 TAAACTAAT
80873208 TAAACTAAT
1 TAAACTAAT
80873217 T-AAC----
1 TAAACTAAT
80873221 TAAACTAAT
1 TAAACTAAT
80873230 T-AACTAAT
1 TAAACTAAT
80873238 TAAACTAA
1 TAAACTAA
80873246 GGTAAAGAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
4 1 0.03
5 3 0.09
8 11 0.34
9 17 0.53
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (9 bp):
TAAACTAAT
Found at i:80873212 original size:22 final size:22
Alignment explanation
Indices: 80873184--80873245 Score: 108
Period size: 22 Copynumber: 2.8 Consensus size: 22
80873174 AGGGTTGTTT
80873184 ATTAAACTAATTAACTAAACTA
1 ATTAAACTAATTAACTAAACTA
80873206 ATTAAACTAATTAACTAAACTA
1 ATTAAACTAATTAACTAAACTA
80873228 ATT-AACTAATTAAACTAA
1 ATTAAACTAATT-AACTAA
80873246 GGTAAAGAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.21
22 31 0.79
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (22 bp):
ATTAAACTAATTAACTAAACTA
Found at i:80873223 original size:17 final size:17
Alignment explanation
Indices: 80873201--80873245 Score: 62
Period size: 13 Copynumber: 2.9 Consensus size: 17
80873191 TAATTAACTA
80873201 AACTAATTAAACTAATT
1 AACTAATTAAACTAATT
80873218 AAC----TAAACTAATT
1 AACTAATTAAACTAATT
80873231 AACTAATTAAACTAA
1 AACTAATTAAACTAA
80873246 GGTAAAGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
13 13 0.54
17 11 0.46
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (17 bp):
AACTAATTAAACTAATT
Found at i:80881554 original size:13 final size:13
Alignment explanation
Indices: 80881536--80881564 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
80881526 GGTTGTTTAT
80881536 TAAACTAATTAAC
1 TAAACTAATTAAC
80881549 TAAACTAATTAAC
1 TAAACTAATTAAC
80881562 TAA
1 TAA
80881565 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:80889221 original size:39 final size:39
Alignment explanation
Indices: 80889167--80889273 Score: 214
Period size: 39 Copynumber: 2.7 Consensus size: 39
80889157 TGCATGATAT
80889167 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
80889206 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
80889245 TGGGAATATATCCGGACATGAGGTCCGCA
1 TGGGAATATATCCGGACATGAGGTCCGCA
80889274 TGTAACACCC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (39 bp):
TGGGAATATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:80890767 original size:79 final size:82
Alignment explanation
Indices: 80890656--80890840 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
80890646 GCTACTCGTT
* *
80890656 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
80890719 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
80890736 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
80890799 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
80890816 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80890841 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:80890840 original size:40 final size:40
Alignment explanation
Indices: 80890637--80890840 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
80890627 CGGAATTTAA
** *
80890637 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80890677 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80890717 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80890756 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
80890796 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80890836 CCGGA
1 CCGGA
80890841 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80896709 original size:35 final size:35
Alignment explanation
Indices: 80896663--80896734 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
80896653 CGATGTTGCG
80896663 TCCTTGAATTTCAGGGTAGTTGGGAAAATTACTTA
1 TCCTTGAATTTCAGGGTAGTTGGGAAAATTACTTA
80896698 TCCTTGAATTTCAGGGTAGTTGGGAAAATTACTTA
1 TCCTTGAATTTCAGGGTAGTTGGGAAAATTACTTA
80896733 TC
1 TC
80896735 TTTGGTGGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (35 bp):
TCCTTGAATTTCAGGGTAGTTGGGAAAATTACTTA
Found at i:80902160 original size:41 final size:44
Alignment explanation
Indices: 80902047--80902179 Score: 139
Period size: 45 Copynumber: 3.0 Consensus size: 44
80902037 CATAGGTCCA
* * *
80902047 ATATGTGTTCTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
1 ATATGTGAT-TCGTGTAAGACCATGTCTGGGACATCGGCATCGAT
* * *
80902092 ATATGTGGTTACGTGTATGACCATGTCTGGGACATCGGCATTG-T
1 ATATGTGATT-CGTGTAAGACCATGTCTGGGACATCGGCATCGAT
* *
80902136 AT-T-TGATTCGTGTAAGACCTTGTCTGGGACAGT-GGCATCAAT
1 ATATGTGATTCGTGTAAGACCATGTCTGGGACA-TCGGCATCGAT
80902178 AT
1 AT
80902180 GAGATAACAT
Statistics
Matches: 75, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
41 26 0.35
42 8 0.11
43 1 0.01
44 4 0.05
45 36 0.48
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.34
Consensus pattern (44 bp):
ATATGTGATTCGTGTAAGACCATGTCTGGGACATCGGCATCGAT
Found at i:80904940 original size:137 final size:137
Alignment explanation
Indices: 80904694--80904967 Score: 548
Period size: 137 Copynumber: 2.0 Consensus size: 137
80904684 CCCTTTAAAG
80904694 ATCCCCAATTTAGGTTCTCTAGCTATTTGACACCTTTAGCTATCAAAATAGGACTTTTACACTTT
1 ATCCCCAATTTAGGTTCTCTAGCTATTTGACACCTTTAGCTATCAAAATAGGACTTTTACACTTT
80904759 ACGCAATTTAGTCCTTTTTCGCAATTAAGCTCACAAATGCTAAAATTAAACCACCAAAATTTTCA
66 ACGCAATTTAGTCCTTTTTCGCAATTAAGCTCACAAATGCTAAAATTAAACCACCAAAATTTTCA
80904824 TGCACCT
131 TGCACCT
80904831 ATCCCCAATTTAGGTTCTCTAGCTATTTGACACCTTTAGCTATCAAAATAGGACTTTTACACTTT
1 ATCCCCAATTTAGGTTCTCTAGCTATTTGACACCTTTAGCTATCAAAATAGGACTTTTACACTTT
80904896 ACGCAATTTAGTCCTTTTTCGCAATTAAGCTCACAAATGCTAAAATTAAACCACCAAAATTTTCA
66 ACGCAATTTAGTCCTTTTTCGCAATTAAGCTCACAAATGCTAAAATTAAACCACCAAAATTTTCA
80904961 TGCACCT
131 TGCACCT
80904968 TTATAAACAT
Statistics
Matches: 137, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
137 137 1.00
ACGTcount: A:0.32, C:0.24, G:0.09, T:0.34
Consensus pattern (137 bp):
ATCCCCAATTTAGGTTCTCTAGCTATTTGACACCTTTAGCTATCAAAATAGGACTTTTACACTTT
ACGCAATTTAGTCCTTTTTCGCAATTAAGCTCACAAATGCTAAAATTAAACCACCAAAATTTTCA
TGCACCT
Found at i:80906933 original size:39 final size:40
Alignment explanation
Indices: 80906825--80907009 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
80906815 TCGAATGATG
* * *
80906825 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
80906864 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
80906905 TCCGGGCTAAG-CCCCAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
80906944 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
80906983 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
80907010 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:80907031 original size:79 final size:79
Alignment explanation
Indices: 80906878--80907042 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
80906868 GGACTAAGAT
* **
80906878 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCCAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCCAAGGCATTGGAACGAGTTACTAA
*
80906943 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
80906957 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCCAAGGCATTGGAACGAGTTA-C
* *
80907020 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
80907036 CCGAAGG
1 CCGAAGG
80907043 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.66
80 23 0.31
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCCAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:80911546 original size:27 final size:27
Alignment explanation
Indices: 80911515--80911686 Score: 184
Period size: 27 Copynumber: 6.4 Consensus size: 27
80911505 GATATTACAT
** *
80911515 GCTTTCCATTTTGAATATGCTACAAAG
1 GCTTTCCATTCAGAATATGCCACAAAG
* * *
80911542 GCTTTCCATTTAAAATATGCCACAAAT
1 GCTTTCCATTCAGAATATGCCACAAAG
* * ** *
80911569 TCTTTCCATTTAGAATACACCATAAAG
1 GCTTTCCATTCAGAATATGCCACAAAG
* *
80911596 GCTTTCCA-TCCGAATATGCCACAAAA
1 GCTTTCCATTCAGAATATGCCACAAAG
*
80911622 GCTTTTCCATTCAAAATATGCCACAAAG
1 GC-TTTCCATTCAGAATATGCCACAAAG
* *
80911650 GCTTTCCATTCAGAATACGCCACAAAA
1 GCTTTCCATTCAGAATATGCCACAAAG
80911677 GCTTTCCATT
1 GCTTTCCATT
80911687 ACTGCCGTTT
Statistics
Matches: 120, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
26 14 0.12
27 89 0.74
28 17 0.14
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (27 bp):
GCTTTCCATTCAGAATATGCCACAAAG
Found at i:80911655 original size:81 final size:80
Alignment explanation
Indices: 80911527--80911685 Score: 228
Period size: 81 Copynumber: 2.0 Consensus size: 80
80911517 TTTCCATTTT
* * * ** * *
80911527 GAATATGCTACAAAGGCTTTCCATTTAAAATATGCCACAAATTCTTTCCATTTAGAATACACCAT
1 GAATATGCCACAAAAGCTTTCCATTCAAAATATGCCACAAAGGCTTTCCATTCAGAATACACCAC
*
80911592 AAAGGCTTTCCATCC
66 AAAAGCTTTCCATCC
*
80911607 GAATATGCCACAAAAGCTTTTCCATTCAAAATATGCCACAAAGGCTTTCCATTCAGAATACGCCA
1 GAATATGCCACAAAAGC-TTTCCATTCAAAATATGCCACAAAGGCTTTCCATTCAGAATACACCA
80911672 CAAAAGCTTTCCAT
65 CAAAAGCTTTCCAT
80911686 TACTGCCGTT
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
80 15 0.22
81 54 0.78
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (80 bp):
GAATATGCCACAAAAGCTTTCCATTCAAAATATGCCACAAAGGCTTTCCATTCAGAATACACCAC
AAAAGCTTTCCATCC
Found at i:80919341 original size:6 final size:6
Alignment explanation
Indices: 80919332--80919358 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
80919322 CACCGTAAGG
80919332 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
80919359 GCGGAACACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:80920444 original size:4 final size:4
Alignment explanation
Indices: 80920435--80920464 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
80920425 CTTTTCTCCA
80920435 TTTC TTTC TTTC TTTC TTTCC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTT-C TTTC TTTC T
80920465 CCACTGTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTC
Found at i:80920499 original size:22 final size:21
Alignment explanation
Indices: 80920474--80920514 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
80920464 TCCACTGTTC
*
80920474 TTCTCTGTTTCGTTTGCTTTGT
1 TTCTCTGTTTCATTT-CTTTGT
*
80920496 TTCTCTTTTTCATTTCTTT
1 TTCTCTGTTTCATTTCTTT
80920515 TTTTTTTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.02, C:0.20, G:0.10, T:0.68
Consensus pattern (21 bp):
TTCTCTGTTTCATTTCTTTGT
Found at i:80920909 original size:19 final size:19
Alignment explanation
Indices: 80920885--80920933 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
80920875 ACTTAATTAT
80920885 TCTTAATTAAGCTAAATTC
1 TCTTAATTAAGCTAAATTC
80920904 TCTTAATTAAGCTAAATTC
1 TCTTAATTAAGCTAAATTC
80920923 TCTTAATTAAG
1 TCTTAATTAAG
80920934 ATTTAATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.43
Consensus pattern (19 bp):
TCTTAATTAAGCTAAATTC
Found at i:80922967 original size:27 final size:26
Alignment explanation
Indices: 80922931--80923094 Score: 123
Period size: 27 Copynumber: 6.1 Consensus size: 26
80922921 ATATCCTCAG
*
80922931 TTGTAAAATTACCAAAGTACCCTCGGT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* * *
80922958 TTATAAAATTACCCAAATATCCTTGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
* *
80922985 TTGCAAAATTATCGAAATACCCTC-AGT
1 TTGTAAAATTA-CCAAATACCCTCGA-T
* *
80923012 TTGTAAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTAC-CAAATACCCTCGAT
* * *
80923039 ATGTAGAATTATCAAAGTACCCTCGAT
1 TTGTAAAATTACCAAA-TACCCTCGAT
** **
80923066 TTACAAAATTACCATTTTACCCTCGAT
1 TTGTAAAATTACCA-AATACCCTCGAT
80923093 TT
1 TT
80923095 ACAGAATTAC
Statistics
Matches: 107, Mismatches: 24, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
26 5 0.05
27 96 0.90
28 6 0.06
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAT
Found at i:80923030 original size:54 final size:53
Alignment explanation
Indices: 80922910--80923077 Score: 142
Period size: 54 Copynumber: 3.1 Consensus size: 53
80922900 TTAGTTTACC
* * *
80922910 AAATTATTGAAATATCCTCAGTTGTAAAATTACCAAAGTACCCTCGGTTTATA
1 AAATTACTGAAATATCCTCAGTTGCAAAATTACCAAAGTACCCTCAGTTTATA
** * * * *
80922963 AAATTACCCAAATATCCTTGATTTGCAAAATTATCGAAA-TACCCTCAGTTTGTA
1 AAATTACTGAAATATCC-TCAGTTGCAAAATTA-CCAAAGTACCCTCAGTTTATA
* ** * * * *
80923017 AAATTACTGAAATACCCTCGACATGTAGAATTATCAAAGTACCCTC-GATTTACA
1 AAATTACTGAAATATCCTC-AGTTGCAAAATTACCAAAGTACCCTCAG-TTTATA
80923071 AAATTAC
1 AAATTAC
80923078 CATTTTACCC
Statistics
Matches: 89, Mismatches: 21, Indels: 9
0.75 0.18 0.08
Matches are distributed among these distances:
53 19 0.21
54 66 0.74
55 4 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (53 bp):
AAATTACTGAAATATCCTCAGTTGCAAAATTACCAAAGTACCCTCAGTTTATA
Found at i:80923049 original size:81 final size:80
Alignment explanation
Indices: 80922904--80923076 Score: 188
Period size: 81 Copynumber: 2.1 Consensus size: 80
80922894 AATACTTTAG
* * * ***
80922904 TTTACCAAATTATTGAAATATCCTCAGTTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTA
1 TTTACAAAATTATCGAAATACCCTCAGTTGTAAAATTACCAAAGTACCCTCGACATATAAAATTA
* *
80922969 CCCAAA-TATCCTTGA
66 -CCAAAGTACCCTCGA
* * * *
80922984 TTTGCAAAATTATCGAAATACCCTCAGTTTGTAAAATTACTGAAA-TACCCTCGACATGTAGAAT
1 TTTACAAAATTATCGAAATACCCTCAG-TTGTAAAATTAC-CAAAGTACCCTCGACATATAAAAT
*
80923048 TATCAAAGTACCCTCGA
64 TACCAAAGTACCCTCGA
80923065 TTTACAAAATTA
1 TTTACAAAATTA
80923077 CCATTTTACC
Statistics
Matches: 76, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
80 27 0.36
81 46 0.61
82 3 0.04
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (80 bp):
TTTACAAAATTATCGAAATACCCTCAGTTGTAAAATTACCAAAGTACCCTCGACATATAAAATTA
CCAAAGTACCCTCGA
Found at i:80923087 original size:54 final size:54
Alignment explanation
Indices: 80923056--80923250 Score: 345
Period size: 54 Copynumber: 3.6 Consensus size: 54
80923046 ATTATCAAAG
*
80923056 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTT
80923110 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTT
* *
80923164 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAGTTACTATTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTT
* *
80923218 TACCCTTGAATTACAAAATTACTATTTTACCCT
1 TACCCTCGATTTACAAAATTACTATTTTACCCT
80923251 NNNNNNNNNN
Statistics
Matches: 136, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 136 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:80923095 original size:27 final size:27
Alignment explanation
Indices: 80923056--80923250 Score: 309
Period size: 27 Copynumber: 7.2 Consensus size: 27
80923046 ATTATCAAAG
*
80923056 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
80923083 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
80923110 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
80923137 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
80923164 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
80923191 TACCCTCGATTTACAGAGTTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
80923218 TACCCTTGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
80923245 TACCCT
1 TACCCT
80923251 NNNNNNNNNN
Statistics
Matches: 153, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 153 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:80923103 original size:81 final size:81
Alignment explanation
Indices: 80923016--80923250 Score: 195
Period size: 81 Copynumber: 2.9 Consensus size: 81
80923006 CTCAGTTTGT
** *
80923016 AAAATTACTGAAATACCCTCGACATGTAGAATTA-TCAAAGTACCCTCGATTTACAAAATTACCA
1 AAAATTACTGAAATACCCTCGACATACAAAATTACT-AAAGTACCCTCGATTTACAAAATTACCA
80923080 TTTTACCCTCGATTTAC
65 TTTTACCCTCGATTTAC
* *** ** *** * **
80923097 AGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTGT
1 AAAATTACTGAAATACCCTCGACATACAAAATTACTAAAGTACCCTCGATTTACAAAATTACCAT
80923162 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
** ** * * *** * * *
80923178 AAAATTACT-ATTTTACCCTCGATTTACAGAGTTACTATTTTACCCTTGAATTACAAAATTACTA
1 AAAATTACTGA-AATACCCTCGACATACAAAATTACTAAAGTACCCTCGATTTACAAAATTACCA
80923242 TTTTACCCT
65 TTTTACCCT
80923251 NNNNNNNNNN
Statistics
Matches: 129, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
81 128 0.99
82 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (81 bp):
AAAATTACTGAAATACCCTCGACATACAAAATTACTAAAGTACCCTCGATTTACAAAATTACCAT
TTTACCCTCGATTTAC
Found at i:80931260 original size:18 final size:17
Alignment explanation
Indices: 80931238--80931285 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
80931228 AGTAATATTT
80931238 ATTTATTCAGTATCAGTC
1 ATTTATTCAGTAT-AGTC
* *
80931256 GTTTATTCTGTAATAGTC
1 ATTTATTCAGT-ATAGTC
*
80931274 AATTATTCAGTA
1 ATTTATTCAGTA
80931286 GCAGACAGTC
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
17 1 0.04
18 21 0.88
19 2 0.08
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.46
Consensus pattern (17 bp):
ATTTATTCAGTATAGTC
Found at i:80931481 original size:6 final size:6
Alignment explanation
Indices: 80931472--80931501 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
80931462 ACAAATCCAA
80931472 AACAGT AACAGT AACAGT AACAGT AACAGT
1 AACAGT AACAGT AACAGT AACAGT AACAGT
80931502 CATGTAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17
Consensus pattern (6 bp):
AACAGT
Found at i:80939090 original size:12 final size:12
Alignment explanation
Indices: 80939073--80939097 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80939063 GGTTTTACAA
80939073 GACCTAGCACAC
1 GACCTAGCACAC
80939085 GACCTAGCACAC
1 GACCTAGCACAC
80939097 G
1 G
80939098 GGCGTGTAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.40, G:0.20, T:0.08
Consensus pattern (12 bp):
GACCTAGCACAC
Found at i:80941340 original size:28 final size:28
Alignment explanation
Indices: 80941308--80941362 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
80941298 TCGACTCTCG
80941308 ACCCTAGACCTCAGACATTGAACCATGT
1 ACCCTAGACCTCAGACATTGAACCATGT
* *
80941336 ACCCTGGTCCTCAGACATTGAACCATG
1 ACCCTAGACCTCAGACATTGAACCATG
80941363 GACCTTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.22
Consensus pattern (28 bp):
ACCCTAGACCTCAGACATTGAACCATGT
Found at i:80941388 original size:21 final size:21
Alignment explanation
Indices: 80941364--80941410 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
80941354 TGAACCATGG
*
80941364 ACCTTCAACCCTAAACCTTAA
1 ACCTTCAACCATAAACCTTAA
** *
80941385 ACCTTGGACCATAAACCTTGA
1 ACCTTCAACCATAAACCTTAA
80941406 ACCTT
1 ACCTT
80941411 GGACCTTAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.34, C:0.34, G:0.06, T:0.26
Consensus pattern (21 bp):
ACCTTCAACCATAAACCTTAA
Found at i:80941411 original size:21 final size:21
Alignment explanation
Indices: 80941375--80941425 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
80941365 CCTTCAACCC
80941375 TAAACCTTAAACCTTGGACCA
1 TAAACCTTAAACCTTGGACCA
* *
80941396 TAAACCTTGAACCTTGGACCT
1 TAAACCTTAAACCTTGGACCA
*
80941417 TAGACCTTA
1 TAAACCTTA
80941426 GACCCCGAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (21 bp):
TAAACCTTAAACCTTGGACCA
Found at i:80941416 original size:14 final size:14
Alignment explanation
Indices: 80941378--80941425 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
80941368 TCAACCCTAA
80941378 ACCTTAAACCTTGG
1 ACCTTAAACCTTGG
* *
80941392 ACCATAAACCTTGA
1 ACCTTAAACCTTGG
** *
80941406 ACCTTGGACCTTAG
1 ACCTTAAACCTTGG
80941420 ACCTTA
1 ACCTTA
80941426 GACCCCGAAC
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.27
Consensus pattern (14 bp):
ACCTTAAACCTTGG
Found at i:80942273 original size:25 final size:24
Alignment explanation
Indices: 80942226--80942271 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
80942216 TATAATGTTA
80942226 ACAAAGGAATTTTTTATTTAAATT
1 ACAAAGGAATTTTTTATTTAAATT
80942250 ACAAAGGAATTTTTTATTTAAA
1 ACAAAGGAATTTTTTATTTAAA
80942272 ATCAGGGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.43
Consensus pattern (24 bp):
ACAAAGGAATTTTTTATTTAAATT
Found at i:80945682 original size:25 final size:25
Alignment explanation
Indices: 80945654--80945704 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
80945644 CCTCTTAAGG
*
80945654 GGTTGAAATCAAAATATTTGATTGT
1 GGTTGAAAACAAAATATTTGATTGT
80945679 GGTTGAAAACAAAATATTTGATTGT
1 GGTTGAAAACAAAATATTTGATTGT
80945704 G
1 G
80945705 CAATATTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (25 bp):
GGTTGAAAACAAAATATTTGATTGT
Done.