Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 234 of 290
Found at i:80946233 original size:18 final size:18
Alignment explanation
Indices: 80946210--80946246 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
80946200 TCATATAGAC
80946210 ATTCATTAAAGAACTATT
1 ATTCATTAAAGAACTATT
*
80946228 ATTCATTAAAGAATTATT
1 ATTCATTAAAGAACTATT
80946246 A
1 A
80946247 AAGAACTAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (18 bp):
ATTCATTAAAGAACTATT
Found at i:80947926 original size:13 final size:13
Alignment explanation
Indices: 80947908--80947932 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80947898 AGATCAAAAT
80947908 ATTTTTCCCTCAA
1 ATTTTTCCCTCAA
80947921 ATTTTTCCCTCA
1 ATTTTTCCCTCA
80947933 CTCATGACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.32, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTTTCCCTCAA
Found at i:80954068 original size:1 final size:1
Alignment explanation
Indices: 80954062--80954088 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
80954052 CCCATTTCTC
80954062 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
80954089 TTTCCCAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:80956231 original size:6 final size:6
Alignment explanation
Indices: 80956180--80956223 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
80956170 AAAGCGTTGT
80956180 CATACA CATACA CATACA CATACA CATACA CATACA CATACA CA
1 CATACA CATACA CATACA CATACA CATACA CATACA CATACA CA
80956224 CAGACACACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (6 bp):
CATACA
Found at i:80966925 original size:47 final size:45
Alignment explanation
Indices: 80966814--80967081 Score: 170
Period size: 47 Copynumber: 5.7 Consensus size: 45
80966804 ATAAATTGCG
* * * *
80966814 GATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATATATGCG-TGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTC---TGT-CGACGCC
80966864 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTCGACGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC--TCTCTGTCGACGCC
* * * * *
80966911 GATGCATGTCCCAGACATGTCTTACTCTGGCACTCATAAT--ATGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTC-T-GTCGA-CGCC
* * * * *
80966957 GAAGCATGTCCCAAACATGTCTTACACTAGCCCT-TGTCTGGATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCTGTC--GACGCC
*
80967003 GATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAGT-G-CAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTC-T-GTCGAC-GCC
* * *
80967051 GAAGCATGTCCCATACATGTCTTATACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
80967082 GCACAAATCA
Statistics
Matches: 177, Mismatches: 25, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 4 0.02
46 52 0.29
47 62 0.35
48 32 0.18
49 14 0.08
50 9 0.05
51 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCTGTCGACGCC
Found at i:80966981 original size:93 final size:93
Alignment explanation
Indices: 80966814--80967081 Score: 312
Period size: 94 Copynumber: 2.8 Consensus size: 93
80966804 ATAAATTGCG
* *
80966814 GATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCAT-ATATGCGTGCTGATGCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAATAT--G-GCTGAAGCATGTCCCAA
*
80966878 ACATGTCTTACACTGGCTATCTCTGTC-GACGCC
63 ACATGTCTTACACTGGC--CCT-TGTCGGACGCC
*
80966911 GATG-CATGTCCCAGACAT-GTCTTACT-CTGGCACTCATAATATGGCTGAAGCATGTCCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTA-TACTGGCTCTCATAATATGGCTGAAGCATGTCCCAAAC
* *
80966973 ATGTCTTACACTAGCCCTTGTCTGGATGCC
65 ATGTCTTACACTGGCCCTTGTC-GGACGCC
* *** * *
80967003 GATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAGTGCAGCCGAAGCATGTCCCATACA
1 GATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAATATGGCTGAAGCATGTCCCAAACA
*
80967068 TGTCTTATACTGGC
66 TGTCTTACACTGGC
80967082 GCACAAATCA
Statistics
Matches: 149, Mismatches: 15, Indels: 17
0.82 0.08 0.09
Matches are distributed among these distances:
90 4 0.03
91 2 0.01
92 9 0.06
93 46 0.31
94 49 0.33
95 16 0.11
96 19 0.13
97 4 0.03
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAATATGGCTGAAGCATGTCCCAAACA
TGTCTTACACTGGCCCTTGTCGGACGCC
Found at i:80971712 original size:46 final size:48
Alignment explanation
Indices: 80971555--80971810 Score: 207
Period size: 46 Copynumber: 5.5 Consensus size: 48
80971545 TGTGTGCTAT
* * *
80971555 TGTAAGA-CATG-CTGGGACATGCATCGGCCAC-ATTATG-AGAGCCAG
1 TGTAAGACCATGTCTGGGACATGCATTGGCCTCGA-GATGTAGAGCCAG
* * * * * * *
80971600 TGTATGATCATGTCTGGGACATGGCATCGGCATTGAGACG-AGAGCTAG
1 TGTAAGACCATGTCTGGGACAT-GCATTGGCCTCGAGATGTAGAGCCAG
80971648 TGTAAGA-CATGTCTGGGACATGCATTGGCCTCGAGATGTA-AGCCAG
1 TGTAAGACCATGTCTGGGACATGCATTGGCCTCGAGATGTAGAGCCAG
* * *
80971694 TGTAAGA-CATGT-TCGGGACATGCATTGG-CTACAAAATGT---GTCAG
1 TGTAAGACCATGTCT-GGGACATGCATTGGCCT-CGAGATGTAGAGCCAG
* * *
80971738 TGTAAGACCATGTTTGGGACATGGCATTGGCACT-GATATGTGAGAGTCAG
1 TGTAAGACCATGTCTGGGACAT-GCATTGGC-CTCGAGATGT-AGAGCCAG
80971788 TGTAAGACCATGTCTGGGACATG
1 TGTAAGACCATGTCTGGGACATG
80971811 GCATCGACTT
Statistics
Matches: 176, Mismatches: 19, Indels: 28
0.79 0.09 0.13
Matches are distributed among these distances:
44 11 0.06
45 21 0.12
46 67 0.38
47 24 0.14
48 25 0.14
49 2 0.01
50 26 0.15
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGCATTGGCCTCGAGATGTAGAGCCAG
Found at i:80973372 original size:99 final size:95
Alignment explanation
Indices: 80973202--80973556 Score: 311
Period size: 99 Copynumber: 3.7 Consensus size: 95
80973192 GAATACTGAC
* *
80973202 GCCATGTCCCAGACATGGTCTTACACT-GACTATTG--TCATCGAGGCCGATGCCATGTCCCAGA
1 GCCATGTCCCAGACAT-GTCTTACACTAG-CTCTCGCATC-TCGAGGCCGATGCCATGTCCCAGA
* *
80973264 AATGGTCTTACACTGACTATCATCATCGAGGCCGAT
63 CAT-GTCTTACACTGACTATCATC-TC-AAGCCGAT
* * * *
80973300 GCCATGTCCCAGGCATGGTCTTACACTAGCTCTCGCATGTCTATGCCGATGCCATGTCCCAGACA
1 GCCATGTCCCAGACAT-GTCTTACACTAGCTCTCGCATCTCGAGGCCGATGCCATGTCCCAGACA
* *
80973365 TGGTCTTACATTGAC-A-CATCTCATAGCTGAT
65 T-GTCTTACACTGACTATCATCTCA-AGCCGAT
* * * * * * ** *
80973396 G-TATATCCCAGACATGTCTTACACTAACT-T-ACTTCACGAGGCTAATG-CATGTCCTAGACAT
1 GCCATGTCCCAGACATGTCTTACACTAGCTCTCGCATCTCGAGGCCGATGCCATGTCCCAGACAT
* *
80973457 GTCTTACACT-AGCTCTCATCTCAATGCCAAT
66 GTCTTACACTGA-CTATCATCTCAA-GCCGAT
* * *
80973488 GCCATGTCCTAGACATGTCTTACACTAGCTCTCG--TCTCAATGCCGATGCCATGTCCCAGACAT
1 GCCATGTCCCAGACATGTCTTACACTAGCTCTCGCATCTCGAGGCCGATGCCATGTCCCAGACAT
80973551 GTCTTA
66 GTCTTA
80973557 TACTAGCTCA
Statistics
Matches: 207, Mismatches: 38, Indels: 28
0.76 0.14 0.10
Matches are distributed among these distances:
89 1 0.00
90 10 0.05
91 14 0.07
92 21 0.10
93 34 0.16
94 33 0.16
95 12 0.06
96 8 0.04
97 4 0.02
98 31 0.15
99 38 0.18
100 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (95 bp):
GCCATGTCCCAGACATGTCTTACACTAGCTCTCGCATCTCGAGGCCGATGCCATGTCCCAGACAT
GTCTTACACTGACTATCATCTCAAGCCGAT
Found at i:80973458 original size:46 final size:47
Alignment explanation
Indices: 80973405--80973561 Score: 174
Period size: 47 Copynumber: 3.4 Consensus size: 47
80973395 TGTATATCCC
* * *
80973405 AGACATGTCTTACACTAACT-TACTTCACGAGGCTAATG-CATGTCCT
1 AGACATGTCTTACACTAACTCT-CATCACAAGGCCAATGCCATGTCCT
* * *
80973451 AGACATGTCTTACACTAGCTCTCATCTCAATGCCAATGCCATGTCCT
1 AGACATGTCTTACACTAACTCTCATCACAAGGCCAATGCCATGTCCT
* * * * * *
80973498 AGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCC
1 AGACATGTCTTACACTAACTCTCATCACAAGGCCAATGCCATGTCCT
*
80973545 AGACATGTCTTATACTA
1 AGACATGTCTTACACTA
80973562 GCTCACAATA
Statistics
Matches: 99, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
46 30 0.30
47 69 0.70
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (47 bp):
AGACATGTCTTACACTAACTCTCATCACAAGGCCAATGCCATGTCCT
Found at i:80973511 original size:47 final size:47
Alignment explanation
Indices: 80973202--80973565 Score: 294
Period size: 49 Copynumber: 7.7 Consensus size: 47
80973192 GAATACTGAC
* ** * *
80973202 GCCATGTCCCAGACATGGTCTTACACT-GACTATTGTCATCGAGGCCGAT
1 GCCATGTCCCAGACAT-GTCTTACACTAG-CTCTCATC-TCAATGCCGAT
* * * *
80973251 GCCATGTCCCAGAAATGGTCTTACACT-GACTATCATCATCGAGGCCGAT
1 GCCATGTCCCAGACAT-GTCTTACACTAG-CTCTCATC-TCAATGCCGAT
* * *
80973300 GCCATGTCCCAGGCATGGTCTTACACTAGCTCTCGCATGTCTATGCCGAT
1 GCCATGTCCCAGACAT-GTCTTACACTAGCTCT--CATCTCAATGCCGAT
* * * *
80973350 GCCATGTCCCAGACATGGTCTTACA-TTG-ACACATCTC-ATAGCTGAT
1 GCCATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAAT-GCCGAT
* * * * * * * **
80973396 G-TATATCCCAGACATGTCTTACACTAACT-TACTTCACGAGGCTAAT
1 GCCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAATGCCGAT
* *
80973442 G-CATGTCCTAGACATGTCTTACACTAGCTCTCATCTCAATGCCAAT
1 GCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGAT
* *
80973488 GCCATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGAT
1 GCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGAT
*
80973535 GCCATGTCCCAGACATGTCTTATACTAGCTC
1 GCCATGTCCCAGACATGTCTTACACTAGCTC
80973566 ACAATAACCC
Statistics
Matches: 267, Mismatches: 38, Indels: 22
0.82 0.12 0.07
Matches are distributed among these distances:
44 8 0.03
45 15 0.06
46 56 0.21
47 74 0.28
48 1 0.00
49 76 0.28
50 34 0.13
51 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
GCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGAT
Found at i:80976147 original size:31 final size:31
Alignment explanation
Indices: 80976109--80976175 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
80976099 GCATAGGATA
* *
80976109 TAACCTTGCCTTCTTACATGAGCTCACATCC
1 TAACCTTGCCTTCTTACAAGAGCACACATCC
**
80976140 TAACCTTGCCTTCTTGGAAGAGCACACATCC
1 TAACCTTGCCTTCTTACAAGAGCACACATCC
80976171 TAACC
1 TAACC
80976176 CGTTCAAGGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.34, G:0.12, T:0.28
Consensus pattern (31 bp):
TAACCTTGCCTTCTTACAAGAGCACACATCC
Found at i:80979181 original size:22 final size:22
Alignment explanation
Indices: 80979150--80979191 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
80979140 CACTTGACAC
*
80979150 AGGGCCACACGCAC-GTGTGAGA
1 AGGGCAACACGC-CTGTGTGAGA
80979172 AGGGCAACACGCCTGTGTGA
1 AGGGCAACACGCCTGTGTGA
80979192 CCATATCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.26, C:0.26, G:0.36, T:0.12
Consensus pattern (22 bp):
AGGGCAACACGCCTGTGTGAGA
Found at i:80985301 original size:46 final size:46
Alignment explanation
Indices: 80985253--80985556 Score: 545
Period size: 46 Copynumber: 6.6 Consensus size: 46
80985243 AGCATCCAAA
* * * *
80985253 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCCCGAG
*
80985299 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCCCGAG
80985345 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCCCGAG
80985391 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCCCGAG
80985437 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCCCGAG
80985483 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCCCGAG
* *
80985529 CTCGTTGAGTTGAGTCCGAATTCACTTA
1 CTCGTTGAGTTGAGTCCGAGTTCGCTTA
80985557 GGGGCTGGTT
Statistics
Matches: 252, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 252 1.00
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.28
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATGCGAACGCCCGAG
Found at i:80992310 original size:46 final size:46
Alignment explanation
Indices: 80992260--80992432 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
80992250 TGGTTGAGCA
80992260 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80992306 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80992351 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
80992399 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80992433 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80992416 original size:93 final size:93
Alignment explanation
Indices: 80992257--80992427 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80992247 GGATGGTTGA
* *
80992257 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80992322 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80992350 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80992415 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80992428 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80994181 original size:17 final size:16
Alignment explanation
Indices: 80994150--80994183 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
80994140 TTCATCCACC
80994150 GAAAACAAAAACAAAA
1 GAAAACAAAAACAAAA
*
80994166 GAAAAGAAACAACAAAA
1 GAAAACAAA-AACAAAA
80994183 G
1 G
80994184 CTTGGTTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.76, C:0.12, G:0.12, T:0.00
Consensus pattern (16 bp):
GAAAACAAAAACAAAA
Found at i:80996490 original size:18 final size:18
Alignment explanation
Indices: 80996467--80996501 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80996457 CAATACAAAT
* *
80996467 TTATTAGATATTTATAAG
1 TTATTAAATATGTATAAG
80996485 TTATTAAATATGTATAA
1 TTATTAAATATGTATAA
80996502 ATGAATTGAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (18 bp):
TTATTAAATATGTATAAG
Found at i:81001814 original size:46 final size:48
Alignment explanation
Indices: 81001670--81001979 Score: 236
Period size: 46 Copynumber: 6.6 Consensus size: 48
81001660 TTTGTATGCT
* * *
81001670 AGTGTAAGA-CATGTCTGGGACAT-GTATCAGCCAC-ATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGA-GATGTA-AGCC
* * * ** *
81001716 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGGGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAGATGTAAGCC
81001764 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAGATGTAAGCC
* * * * **
81001810 AGTGTAAGA-CATGTCTCGGACAT-GCATC-GGCTACAAAATGT--GTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCT-CGAGATGTAAGCC
* * * *
81001854 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-AGATATGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTCGAGATGT-A-AGCC
* * *
81001904 AGTGTAAGACCATGTTTGGGACATGGCATC-GACTTGATGGATG--AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGA--GATGTAAGCC
*
81001951 AGTGTAAGACCATGTCTGGGACTTGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
81001980 TGACATTATA
Statistics
Matches: 215, Mismatches: 33, Indels: 31
0.77 0.12 0.11
Matches are distributed among these distances:
44 10 0.05
45 16 0.07
46 69 0.32
47 59 0.27
48 23 0.11
49 4 0.02
50 31 0.14
51 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGAGATGTAAGCC
Found at i:81009453 original size:21 final size:20
Alignment explanation
Indices: 81009428--81009469 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
81009418 TGTATGAGAT
*
81009428 TTAATGATTGATGATAGATTA
1 TTAATGATTAATGATAG-TTA
*
81009449 TTAATGTTTAATGATAGTTA
1 TTAATGATTAATGATAGTTA
81009469 T
1 T
81009470 ACAAGTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.48
Consensus pattern (20 bp):
TTAATGATTAATGATAGTTA
Found at i:81013869 original size:43 final size:43
Alignment explanation
Indices: 81013803--81013971 Score: 130
Period size: 43 Copynumber: 4.0 Consensus size: 43
81013793 AGCTCGTACA
* *
81013803 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATAG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATAG
* *
81013846 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCAAATACA-
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCAAATATAG
** * * * * * *
81013888 ATGCTGATGTCCTAAACATGGTCCTACATGTAATCTCAAAT-T-G
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AA-ATCAAATATAG
* * * * *
81013931 ATGTCAATGTCCCAAACGCGGTCTTACACAAAATCACATAT
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATAT
81013972 CAGAAATCCT
Statistics
Matches: 95, Mismatches: 25, Indels: 13
0.71 0.19 0.10
Matches are distributed among these distances:
41 5 0.05
42 24 0.25
43 59 0.62
44 7 0.07
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATAG
Found at i:81015531 original size:83 final size:83
Alignment explanation
Indices: 81015191--81015509 Score: 629
Period size: 83 Copynumber: 3.8 Consensus size: 83
81015181 GGGCTGTTAC
*
81015191 AAACAAACCTTTTAGCTAATCAAAACTTTGTTGGCTCCTAACCAACCAAACAAACCTAACATTTT
1 AAACAAAGCTTTTAGCTAATCAAAACTTTGTTGGCTCCTAACCAACCAAACAAACCTAACATTTT
81015256 TTGTATAGAAGCTTCTGT
66 TTGTATAGAAGCTTCTGT
81015274 AAACAAAGCTTTTAGCTAATCAAAACTTTGTTGGCTCCTAACCAACCAAACAAACCTAACATTTT
1 AAACAAAGCTTTTAGCTAATCAAAACTTTGTTGGCTCCTAACCAACCAAACAAACCTAACATTTT
81015339 TTGTATAGAAGCTTCTGT
66 TTGTATAGAAGCTTCTGT
81015357 AAACAAAGCTTTTAGCTAATCAAAACTTTGTTGGCTCCTAACCAACCAAACAAACCTAACATTTT
1 AAACAAAGCTTTTAGCTAATCAAAACTTTGTTGGCTCCTAACCAACCAAACAAACCTAACATTTT
81015422 TTGTATAGAAGCTTCTGT
66 TTGTATAGAAGCTTCTGT
81015440 AAACAAAGCTTTTAGCTAATCAAAACTTTGTTGGCTCCTAACCAACCAAACAAACCTAACATTTT
1 AAACAAAGCTTTTAGCTAATCAAAACTTTGTTGGCTCCTAACCAACCAAACAAACCTAACATTTT
81015505 TTGTA
66 TTGTA
81015510 ATATCTTACT
Statistics
Matches: 235, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 235 1.00
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (83 bp):
AAACAAAGCTTTTAGCTAATCAAAACTTTGTTGGCTCCTAACCAACCAAACAAACCTAACATTTT
TTGTATAGAAGCTTCTGT
Found at i:81026395 original size:64 final size:64
Alignment explanation
Indices: 81026315--81026498 Score: 201
Period size: 67 Copynumber: 2.8 Consensus size: 64
81026305 AGACATTATG
* *
81026315 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
81026379 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
81026444 AA
63 AA
* * * * *
81026446 AT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
81026499 CAAACTATAT
Statistics
Matches: 98, Mismatches: 18, Indels: 9
0.78 0.14 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 17 0.17
67 32 0.33
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:81047006 original size:18 final size:19
Alignment explanation
Indices: 81046966--81047006 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
81046956 TATGATTTGA
81046966 TATGATATGCACATGATATG
1 TATGATATGCACATGA-ATG
*
81046986 TATGATTTGCACATG-ATG
1 TATGATATGCACATGAATG
81047004 TAT
1 TAT
81047007 TCATTTATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 6 0.30
20 14 0.70
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (19 bp):
TATGATATGCACATGAATG
Found at i:81047077 original size:25 final size:25
Alignment explanation
Indices: 81047049--81047118 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
81047039 GAGGAAGTGC
* * *
81047049 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
81047074 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
81047099 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
81047119 ATTAAGGCTA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:81047371 original size:31 final size:31
Alignment explanation
Indices: 81047330--81047409 Score: 135
Period size: 31 Copynumber: 2.6 Consensus size: 31
81047320 ATATTTTACC
81047330 GTAAAGGCTTCGGCCCAGTGATATGAATAAT
1 GTAAAGGCTTCGGCCCAGTGATATGAATAAT
81047361 G-AGAAGGCTTCGGCCCAGTGATATGAATAAT
1 GTA-AAGGCTTCGGCCCAGTGATATGAATAAT
*
81047392 GTAAATGCTTCGGCCCAG
1 GTAAAGGCTTCGGCCCAG
81047410 ATATGCTGAG
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
30 1 0.02
31 44 0.96
32 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (31 bp):
GTAAAGGCTTCGGCCCAGTGATATGAATAAT
Found at i:81049066 original size:24 final size:24
Alignment explanation
Indices: 81049031--81049102 Score: 117
Period size: 24 Copynumber: 3.0 Consensus size: 24
81049021 GGTGTGTGAC
*
81049031 ACACGGCTGTGTGATAGCCCATGT
1 ACACGGCCGTGTGATAGCCCATGT
*
81049055 ACACGGCCGTGTGATAGCCAATGT
1 ACACGGCCGTGTGATAGCCCATGT
*
81049079 ACACGGCCGTGTGACAGCCCATGT
1 ACACGGCCGTGTGATAGCCCATGT
81049103 CTGGGGCTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (24 bp):
ACACGGCCGTGTGATAGCCCATGT
Found at i:81050442 original size:32 final size:32
Alignment explanation
Indices: 81050406--81050470 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
81050396 AAATATGCTA
81050406 AGTGATTTTTTCTCATACCTATATCAACTAAC
1 AGTGATTTTTTCTCATACCTATATCAACTAAC
*
81050438 AGTGATTTTTTCTCTTACCTATATCAACTAAC
1 AGTGATTTTTTCTCATACCTATATCAACTAAC
81050470 A
1 A
81050471 TTTTTCCTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.42
Consensus pattern (32 bp):
AGTGATTTTTTCTCATACCTATATCAACTAAC
Found at i:81050474 original size:28 final size:29
Alignment explanation
Indices: 81050409--81050481 Score: 94
Period size: 32 Copynumber: 2.4 Consensus size: 29
81050399 TATGCTAAGT
81050409 GATTTTTTCTCATACCTATATCAACTAAC
1 GATTTTTTCTCATACCTATATCAACTAAC
*
81050438 AGTGATTTTTTCTCTTACCTATATCAACTAAC
1 ---GATTTTTTCTCATACCTATATCAACTAAC
*
81050470 -ATTTTTCCTCAT
1 GATTTTTTCTCAT
81050482 TTCACAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 10 0.26
32 28 0.74
ACGTcount: A:0.27, C:0.23, G:0.04, T:0.45
Consensus pattern (29 bp):
GATTTTTTCTCATACCTATATCAACTAAC
Found at i:81052524 original size:15 final size:15
Alignment explanation
Indices: 81052504--81052551 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
81052494 TCAAAGATGG
81052504 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
81052519 GTTTATGTAGATG-G
1 GTTTATGGATATGAA
*
81052533 GTTTATGGATATAAA
1 GTTTATGGATATGAA
81052548 GTTT
1 GTTT
81052552 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:81052538 original size:14 final size:14
Alignment explanation
Indices: 81052498--81052541 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
81052488 AAGGATTCAA
81052498 AGATGGGTTTATGG
1 AGATGGGTTTATGG
* * *
81052512 ATATGAAGTTTATGT
1 AGATG-GGTTTATGG
81052527 AGATGGGTTTATGG
1 AGATGGGTTTATGG
81052541 A
1 A
81052542 TATAAAGTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.27, C:0.00, G:0.34, T:0.39
Consensus pattern (14 bp):
AGATGGGTTTATGG
Found at i:81052567 original size:29 final size:29
Alignment explanation
Indices: 81052498--81052557 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
81052488 AAGGATTCAA
*
81052498 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
*
81052527 AGATGGGTTTATGGATATAAAGTTTTTGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
81052556 AG
1 AG
81052558 GTTTGGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42
Consensus pattern (29 bp):
AGATGGGTTTATGGATATAAAGTTTATGT
Found at i:81053980 original size:14 final size:14
Alignment explanation
Indices: 81053958--81054002 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
81053948 TTAAAGAAGC
81053958 AACTCATTAAATTA
1 AACTCATTAAATTA
*
81053972 AATTCATTAAA-TA
1 AACTCATTAAATTA
*
81053985 AACTCATTTAATTA
1 AACTCATTAAATTA
81053999 AACT
1 AACT
81054003 AAGATGAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:81054040 original size:22 final size:22
Alignment explanation
Indices: 81054014--81054083 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
81054004 AGATGAGTTC
81054014 TATTAATGACCAGCAACTCATT
1 TATTAATGACCAGCAACTCATT
* *
81054036 TATTAA--ACTA--AGA-TGAGTT
1 TATTAATGACCAGCA-ACTCA-TT
81054055 GTATTAATGACCAGCAACTCATT
1 -TATTAATGACCAGCAACTCATT
81054078 TATTAA
1 TATTAA
81054084 ACTAAGAGGC
Statistics
Matches: 36, Mismatches: 4, Indels: 16
0.64 0.07 0.29
Matches are distributed among these distances:
18 3 0.08
19 3 0.08
20 9 0.25
22 15 0.42
23 3 0.08
24 3 0.08
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (22 bp):
TATTAATGACCAGCAACTCATT
Found at i:81054046 original size:42 final size:42
Alignment explanation
Indices: 81053985--81054090 Score: 194
Period size: 42 Copynumber: 2.5 Consensus size: 42
81053975 TCATTAAATA
81053985 AACTCATTTAATTAAACTAAGATGAGTTCTATTAATGACCAGC
1 AACTCATTT-ATTAAACTAAGATGAGTTCTATTAATGACCAGC
*
81054028 AACTCATTTATTAAACTAAGATGAGTTGTATTAATGACCAGC
1 AACTCATTTATTAAACTAAGATGAGTTCTATTAATGACCAGC
81054070 AACTCATTTATTAAACTAAGA
1 AACTCATTTATTAAACTAAGA
81054091 GGCTTAAATG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
42 53 0.85
43 9 0.15
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33
Consensus pattern (42 bp):
AACTCATTTATTAAACTAAGATGAGTTCTATTAATGACCAGC
Found at i:81054989 original size:29 final size:29
Alignment explanation
Indices: 81054956--81055015 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
81054946 ATAACCAAAC
*
81054956 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
81054985 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
81055014 CT
1 CT
81055016 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:81055008 original size:15 final size:15
Alignment explanation
Indices: 81054962--81055009 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
81054952 AAACCTACAA
*
81054962 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
81054977 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
81054991 AAACTTCATATCCAT
1 AAACTTCATATCCAT
81055006 AAAC
1 AAAC
81055010 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:81055924 original size:55 final size:56
Alignment explanation
Indices: 81055859--81056047 Score: 275
Period size: 50 Copynumber: 3.5 Consensus size: 56
81055849 ACCATGGCAT
* * *
81055859 CGATATATGTGTGCGAGTAAGACCATGTTTTATACGTTGGCATCGATATGTG-CTT
1 CGATATATGTGTGCGAGTAAGACCATGTTTTATAGGTTGGCATTGATATGTGACTC
* * *
81055914 CGATAAATGTGTGCGAGTAAGACTACGTTTTATAGGTTGGCATTGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCATGTTTTATAGGTTGGCATTGATATGTGACTC
81055970 CGATATATGTGTGCGAGTAAGACC------TATAGGTTGGCATTGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCATGTTTTATAGGTTGGCATTGATATGTGACTC
81056020 CGATATATGTGTGCGAGTAAGACCATGT
1 CGATATATGTGTGCGAGTAAGACCATGT
81056048 CTGGGACAGT
Statistics
Matches: 121, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
50 50 0.41
55 47 0.39
56 24 0.20
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCATGTTTTATAGGTTGGCATTGATATGTGACTC
Found at i:81063266 original size:30 final size:30
Alignment explanation
Indices: 81063232--81063292 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
81063222 TCCTTAACTC
81063232 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
81063262 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
81063292 A
1 A
81063293 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:81067541 original size:21 final size:21
Alignment explanation
Indices: 81067497--81067542 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
81067487 AAGGTATGTA
**
81067497 TTTTGTTCAGTTTTTGATTTT
1 TTTTGTTCAGTTTTTGATGAT
81067518 TTTTGTTCAGTTTTTGATGAT
1 TTTTGTTCAGTTTTTGATGAT
81067539 TTTT
1 TTTT
81067543 TATGTTTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.11, C:0.04, G:0.15, T:0.70
Consensus pattern (21 bp):
TTTTGTTCAGTTTTTGATGAT
Found at i:81079313 original size:40 final size:40
Alignment explanation
Indices: 81079269--81079530 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
81079259 GCTCCTCGTT
* *
81079269 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
81079309 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
81079349 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
81079388 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
81079427 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
81079466 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
81079507 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81079531 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:81085725 original size:60 final size:60
Alignment explanation
Indices: 81085599--81085725 Score: 132
Period size: 60 Copynumber: 2.1 Consensus size: 60
81085589 AACTATGTTT
* *
81085599 ATATGGGCAAGGCCCAATATATCTCAACTTGTAATAGGGCTACGACCCAGGTTGATACTG
1 ATATGGGCAAGGCCCAATATATCTCAACTTGTAATAGGGCTACGACCCAGATTAATACTG
* * * * * * * *
81085659 ACATGGGCTAGGCCCAGTATACTCTGATAC-TGTAA-GGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCAAGGCCCAATATA-TCTCA-ACTTGTAATAGGGCTACGACCCAGATTAATACTG
81085719 ATATGGG
1 ATATGGG
81085726 TTAAAGCACA
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
60 43 0.80
61 9 0.17
62 2 0.04
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (60 bp):
ATATGGGCAAGGCCCAATATATCTCAACTTGTAATAGGGCTACGACCCAGATTAATACTG
Found at i:81088823 original size:40 final size:40
Alignment explanation
Indices: 81088740--81089002 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
81088730 TTGAATGCTG
* * * * * *
81088740 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
81088780 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
81088820 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
81088860 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
81088900 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
81088940 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
81088979 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
81089003 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:81089022 original size:79 final size:80
Alignment explanation
Indices: 81088779--81089037 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
81088769 AAGTGAATAT
* * * * * *
81088779 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
81088843 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
81088859 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
81088924 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
81088939 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
81089003 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
81089018 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
81089038 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:81090882 original size:18 final size:20
Alignment explanation
Indices: 81090846--81090892 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
81090836 AGTTGTAAGT
81090846 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
81090866 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
81090885 ATGATATA
1 AT-ATATA
81090893 ACCTGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:81091306 original size:50 final size:50
Alignment explanation
Indices: 81091243--81091727 Score: 386
Period size: 50 Copynumber: 9.6 Consensus size: 50
81091233 TTCATTATGA
* * *
81091243 GTCACATGTGTAGTAGTAAGTGTAGGATACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
** * * * *
81091293 GTGGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * * * * * *
81091344 ATCACGTGTGTAGTACTAAGGGTAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * *
81091394 GTCACGTGTGTTGTACTAAGTGAAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
** * * * * *
81091444 GTTGCATGTGTAGTTCTAAGTGCAGGCTACTATGCGTATCC-G-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATTGA--TAG
* * * * * * * *
81091495 ATCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * *
81091545 TTCACTTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * *
81091595 GTCGCTTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCC-G-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATTGA--TAG
* ** * * * *
81091646 ATCAGGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* *
81091696 GTCACTTGTGTAGTACTAAGTACAGGCTACTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTA
81091728 TGCGTACCCG
Statistics
Matches: 334, Mismatches: 88, Indels: 26
0.75 0.20 0.06
Matches are distributed among these distances:
49 9 0.03
50 216 0.65
51 106 0.32
52 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:81091424 original size:101 final size:101
Alignment explanation
Indices: 81091244--81091745 Score: 433
Period size: 101 Copynumber: 5.0 Consensus size: 101
81091234 TCATTATGAG
* * * * * * * * ** *
81091244 TCACATGTGTAGTAGTAAGTGTAGGATACTACGTGTACCAGATTGATAGGTGGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
*
81091309 TAAGTGCAGGCTACTATGTGTACCCGTTAACTTCGA
66 TAAGTGAAGGCTACTATGTGTACCCGTTAACTTCGA
* * *
81091345 TCACGTGTGTAGTACTAAGGGTAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTTGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
* * * ** *
81091410 TAAGTGAAGGCTACTACGTGTACCAGATTGA-TAGGT
66 TAAGTGAAGGCTACTATGTGTACCCG-TTAACTTCGA
* * * * * ** *
81091446 TGCA--TGTGTAGTTCTAAGTGCAGGCTACTATGCGTATCCGTTAACTT-CGATCACGTGTGTAG
1 T-CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAAG-TCACGTGTGTAG
* ** * * * ** *
81091508 TACTAAGTGTAGGCTACTACATGTATCAGAT-GGTT-AA
63 TACTAAGTGAAGGCTACTATGTGTACCCGTTAACTTCGA
* * * * * * * *
81091545 TTCACTTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGATAGGTCGCTTGTGTAGTA
1 -TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTA
* * *
81091610 CTAAGTGCAGGCTACTATGCGTATCCGTTAACTTCGA
65 CTAAGTGAAGGCTACTATGTGTACCCGTTAACTTCGA
* *
81091647 TCAGGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACTTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
*
81091712 TAAGT-ACAGGCTACTATGCGTACCCGTTAACTTC
66 TAAGTGA-AGGCTACTATGTGTACCCGTTAACTTC
81091746 ATGTACCAGA
Statistics
Matches: 319, Mismatches: 70, Indels: 24
0.77 0.17 0.06
Matches are distributed among these distances:
99 2 0.01
100 71 0.22
101 240 0.75
102 6 0.02
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCCGTTAACTTCGA
Found at i:81091520 original size:151 final size:151
Alignment explanation
Indices: 81091242--81091945 Score: 794
Period size: 151 Copynumber: 4.5 Consensus size: 151
81091232 ATTCATTATG
* * * * *
81091242 AGTCACATGTGTAGTAGTAAGTGTAGGATACTACGTGTACCAGATTGATAGGTGGCATGTGTAGT
1 AGTCACTTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * *
81091307 ACTAAGTGCAGGCTACTATGTGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGGGTAGGCT
66 ACTAAGTGCAGGCTACTATGCGTATCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCT
81091372 ACTACGTGTATCAGATGGTTA
131 ACTACGTGTATCAGATGGTTA
* * *
81091393 AGTCACGTGTGTTGTACTAAGTGAAGGCTACTACGTGTACCAGATTGATAGGTTGCATGTGTAGT
1 AGTCACTTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
81091458 TCTAAGTGCAGGCTACTATGCGTATCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCT
66 ACTAAGTGCAGGCTACTATGCGTATCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCT
*
81091523 ACTACATGTATCAGATGGTTA
131 ACTACGTGTATCAGATGGTTA
* *
81091544 ATTCACTTGTGTAGTACTAAGTGCAA-GCTACTACGTGTACCAGATTGATAGGTCGCTTGTGTAG
1 AGTCACTTGTGTAGTACTAAGTG-AAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAG
* *
81091608 TACTAAGTGCAGGCTACTATGCGTATCCGTTAACTTCGATCAGGTGTGTAGTACTAAGTGCAGGC
65 TACTAAGTGCAGGCTACTATGCGTATCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGC
81091673 TACTACGTGTATCAGATGGTTA
130 TACTACGTGTATCAGATGGTTA
* * * * *
81091695 AGTCACTTGTGTAGTACTAAGT-ACAGGCTACTATGCGTACCCG-TTAACTTCATGTAC-CA-GA
1 AGTCACTTGTGTAGTACTAAGTGA-AGGCTACTACGTGTACCAGATTGA--T-AGGT-CGCATG-
* * * * ** * * * *
81091756 TTGATAGGT-CGCATGTGTA-G-TACTAAGTACAGGCTACTATGTGTATCCATTAGCTTCAATCA
60 -TG-TA-GTAC-TAAGTGCAGGCTACT-A-TGC--G-TA-TCCGT-TA-AC-TTCG-ATC-A-CG
* *
81091818 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATTGTTA
109 TGTG--TAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTA
*
81091863 AGTAACTTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACTTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* *
81091928 ACTGAGTGTAGGCTACTA
66 ACTAAGTGCAGGCTACTA
81091946 CGTGTATCAG
Statistics
Matches: 470, Mismatches: 50, Indels: 53
0.82 0.09 0.09
Matches are distributed among these distances:
149 1 0.00
150 4 0.01
151 314 0.67
152 4 0.01
153 4 0.01
154 7 0.01
155 5 0.01
156 9 0.02
158 1 0.00
159 2 0.00
160 3 0.01
161 2 0.00
162 1 0.00
163 10 0.02
164 7 0.01
165 8 0.02
166 8 0.02
167 2 0.00
168 74 0.16
169 4 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (151 bp):
AGTCACTTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTATCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCT
ACTACGTGTATCAGATGGTTA
Found at i:81091857 original size:168 final size:168
Alignment explanation
Indices: 81091579--81091895 Score: 528
Period size: 168 Copynumber: 1.9 Consensus size: 168
81091569 AGCTACTACG
* * *
81091579 TGTACCAGATTGATAGGTCGCTTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCCGTTAACTT
1 TGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTATCCATTAACTT
* * *
81091644 CGATCAGGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTCACTTGTGTAG
66 CAATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTAACTTGTGTAG
81091709 TACTAAGT-ACAGGCTACTATGCGTACCCGTTAACTTCA
131 TACTAAGTGA-AGGCTACTATGCGTACCCGTTAACTTCA
* *
81091747 TGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTACAGGCTACTATGTGTATCCATTAGCTT
1 TGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTATCCATTAACTT
* *
81091812 CAATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATTGTTAAGTAACTTGTGTAG
66 CAATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTAACTTGTGTAG
81091877 TACTAAGTGAAGGCTACTA
131 TACTAAGTGAAGGCTACTA
81091896 CGTGTACCAG
Statistics
Matches: 138, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
168 137 0.99
169 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (168 bp):
TGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTATCCATTAACTT
CAATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAAGTAACTTGTGTAG
TACTAAGTGAAGGCTACTATGCGTACCCGTTAACTTCA
Found at i:81091885 original size:50 final size:50
Alignment explanation
Indices: 81091769--81091995 Score: 269
Period size: 50 Copynumber: 4.5 Consensus size: 50
81091759 ATAGGTCGCA
* * * *
81091769 TGTGTAGTACTAAGTACAGGCTACTATGTGTATC-CATTAGCTTCAA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATT-G-TT-AAGTCACT
* *
81091820 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATTGTTAAGTAACT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAAGTCACT
* * * * * *
81091870 TGTGTAGTACTAAGTGAAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAAGTCACT
* * *
81091920 TGTGTAGTACTGAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTCACT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAAGTCACT
*
81091970 TGTGTAGTACTAAGTGCAAGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
81091996 TGCGTACCCG
Statistics
Matches: 150, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
49 2 0.01
50 113 0.75
51 32 0.21
52 3 0.02
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAAGTCACT
Found at i:81091978 original size:268 final size:268
Alignment explanation
Indices: 81091546--81092213 Score: 984
Period size: 268 Copynumber: 2.5 Consensus size: 268
81091536 GATGGTTAAT
* * * * * *
81091546 TCACTTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGATAGGTCGCTTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAAGTCACTTGTGTAGTAC
* * **
81091611 TAAGTGCAGGCTACTATGCGTATCC-G-TT-A-ACTTCGATCAGGTGTGTAGTACTAAGTGCAGG
66 TAAGTGCAGGCTACTACGTGTA-CCAGATTGATAGGTCG--CA--TGTGTAGTACTAAGTGCAGG
*
81091672 CTACTACGTGTATCAGATGGTTAAGTCACTTGTGTAGTACTAAGTACAGGCTACTATGCGTACCC
126 CTACTACGTGTATCAGATGGTTAAGTCACTTGTGTAGTACTAAGTACAAGCTACTATGCGTACCC
** *
81091737 GTTAACTTCATGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTACAGGCTACTATGTGTAT
191 GTTAACTTCACATACCAGATTGATAGGTCACATGTGTAGTACTAAGTACAGGCTACTATGTGTAT
*
81091802 CCATTAGCTTCAA
256 CCATTAACTTCAA
* *
81091815 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATTGTTAAGTAACTTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAAGTCACTTGTGTAGTAC
* * *
81091880 TAAGTGAAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTGAGTGTAGGCTACT
66 TAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
*
81091945 ACGTGTATCAGATGGTTAAGTCACTTGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGTTAA
131 ACGTGTATCAGATGGTTAAGTCACTTGTGTAGTACTAAGTACAAGCTACTATGCGTACCCGTTAA
* ** **
81092010 CTTCGCATACCAGATTGATAGGTCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTATCGTTT
196 CTTCACATACCAGATTGATAGGTCACATGTGTAGTACTAAGTACAGGCTACTATGTGTATCCATT
*
81092075 AACTTCGA
261 AACTTCAA
* *
81092083 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAAGTCACTTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAAGTCACTTGTGTAGTAC
* *
81092148 TAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGGATGTGTAGTACTAAGTGCGGGCTACT
66 TAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
81092213 A
131 A
81092214 TGCATACCAA
Statistics
Matches: 359, Mismatches: 36, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
268 273 0.76
269 77 0.21
270 4 0.01
271 1 0.00
272 4 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (268 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAAGTCACTTGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
ACGTGTATCAGATGGTTAAGTCACTTGTGTAGTACTAAGTACAAGCTACTATGCGTACCCGTTAA
CTTCACATACCAGATTGATAGGTCACATGTGTAGTACTAAGTACAGGCTACTATGTGTATCCATT
AACTTCAA
Found at i:81092003 original size:100 final size:100
Alignment explanation
Indices: 81091820--81092003 Score: 307
Period size: 100 Copynumber: 1.8 Consensus size: 100
81091810 TTCAATCACG
*
81091820 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATTGTTAAGTAACTTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTAACTTGTGTAGTACTAAGT
*
81091885 GAAGGCTACTACGTGTACCAGATTGATAGGTCGCA
66 GAAGGCTACTACGCGTACCAGATTGATAGGTCGCA
* *
81091920 TGTGTAGTACTGAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTCACTTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTAACTTGTGTAGTACTAAGT
*
81091985 GCAA-GCTACTATGCGTACC
66 G-AAGGCTACTACGCGTACC
81092004 CGTTAACTTC
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
100 76 0.97
101 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAAGTAACTTGTGTAGTACTAAGT
GAAGGCTACTACGCGTACCAGATTGATAGGTCGCA
Found at i:81092094 original size:218 final size:217
Alignment explanation
Indices: 81091815--81092221 Score: 530
Period size: 218 Copynumber: 1.9 Consensus size: 217
81091805 TTAGCTTCAA
* * *
81091815 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATTGTTAAGTAACTTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATTCTTAAGTAACGTGTGTAGTAC
* * * * *
81091880 TAAGTGAAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTGAGTGTAGGCTACT
66 TAAGTGAAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAGGCTACT
* * * *
81091945 ACGTGTATCAGATGGTTAAGTCACTTGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGTTAA
131 ACGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAAGCTACTATGCATACCCGTTAA
81092010 CTTCGCATACCAGATTGATAGG
196 CTTCGCATACCAGATTGATAGG
* * * *
81092032 TCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTATC-GTTTAACTT-CGATCACGTGTGTAG
1 TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATT--CTTAAG-TAACGTGTGTAG
* * * * *
81092095 TACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAAGTCACTTGTGTAGTACTAAGTGCAGGCT
63 TACTAAGTGAAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAGGCT
* * ** **
81092160 ACTACGTGTACCAGATTGATAGGTCGGATGTGTAGTACTAAGTGCGGGCTACTATGCATACC
128 ACTACGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAAGCTACTATGCATACC
81092222 AAAGAGCTTT
Statistics
Matches: 160, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
216 3 0.02
217 38 0.24
218 119 0.74
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (217 bp):
TCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATTCTTAAGTAACGTGTGTAGTAC
TAAGTGAAGGCTACTACGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAGGCTACT
ACGTGTACCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAAGCTACTATGCATACCCGTTAA
CTTCGCATACCAGATTGATAGG
Found at i:81092222 original size:50 final size:50
Alignment explanation
Indices: 81092017--81092215 Score: 202
Period size: 50 Copynumber: 4.0 Consensus size: 50
81092007 TAACTTCGCA
* * *
81092017 TACCAGATTGATAGGTCACATGTGTAGTACTAAGTGTAGGCTACTATGTG
1 TACCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTG
* * ** ** *
81092067 TATC-GTTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTG
1 TACCAGATGGA-TAAG-TCACATGTGTAGTACTAAGTGCAGGCTACTATGTG
* * * *
81092118 TATCAGATGGTTAAGTCACTTGTGTAGTACTAAGTGCAGGCTACTACGTG
1 TACCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTG
* * ** *
81092168 TACCAGATTGATAGGTCGGATGTGTAGTACTAAGTGCGGGCTACTATG
1 TACCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
81092216 CATACCAAAG
Statistics
Matches: 122, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
49 4 0.03
50 77 0.63
51 39 0.32
52 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (50 bp):
TACCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTG
Found at i:81094631 original size:26 final size:26
Alignment explanation
Indices: 81094562--81094634 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
81094552 CTCTTTTAAT
*
81094562 AACTAGGGCATAAGCCCCTTTCGGTA
1 AACTAGGGCATAAGCCCTTTTCGGTA
*
81094588 AACTCGGGCATAAGCCCTTTTCGGTA
1 AACTAGGGCATAAGCCCTTTTCGGTA
81094614 AACTAGGGCATAAGCCCTTTT
1 AACTAGGGCATAAGCCCTTTT
81094635 GCACTTCCTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (26 bp):
AACTAGGGCATAAGCCCTTTTCGGTA
Found at i:81095339 original size:14 final size:14
Alignment explanation
Indices: 81095308--81095348 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
81095298 ACACCTGATT
81095308 CACGATAT-TCCT-
1 CACGATATCTCCTA
81095320 CGACGATATCTCCTA
1 C-ACGATATCTCCTA
*
81095335 CACGATTTCTCCTA
1 CACGATATCTCCTA
81095349 TAATCAGCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 1 0.04
13 7 0.28
14 16 0.64
15 1 0.04
ACGTcount: A:0.24, C:0.34, G:0.10, T:0.32
Consensus pattern (14 bp):
CACGATATCTCCTA
Found at i:81097673 original size:10 final size:10
Alignment explanation
Indices: 81097658--81097687 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
81097648 ATTTCAAAAA
81097658 TCGTATTAAT
1 TCGTATTAAT
81097668 TCGTATTAAT
1 TCGTATTAAT
81097678 TCGTATTAAT
1 TCGTATTAAT
81097688 AATTGTAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (10 bp):
TCGTATTAAT
Found at i:81104094 original size:30 final size:30
Alignment explanation
Indices: 81104060--81104119 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
81104050 ATTTAATACG
81104060 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
81104090 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
81104120 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:81105671 original size:106 final size:106
Alignment explanation
Indices: 81105486--81105720 Score: 470
Period size: 106 Copynumber: 2.2 Consensus size: 106
81105476 GACCCTAATC
81105486 GGATTACCCGTCCGGGCTAAATCCATAATGCACACATATTCTTCAGGAGGCTTGATCATTCAAGG
1 GGATTACCCGTCCGGGCTAAATCCATAATGCACACATATTCTTCAGGAGGCTTGATCATTCAAGG
81105551 AACACCCATCCAGGCTAGATCCTTTTCATAATTGAGATCAT
66 AACACCCATCCAGGCTAGATCCTTTTCATAATTGAGATCAT
81105592 GGATTACCCGTCCGGGCTAAATCCATAATGCACACATATTCTTCAGGAGGCTTGATCATTCAAGG
1 GGATTACCCGTCCGGGCTAAATCCATAATGCACACATATTCTTCAGGAGGCTTGATCATTCAAGG
81105657 AACACCCATCCAGGCTAGATCCTTTTCATAATTGAGATCAT
66 AACACCCATCCAGGCTAGATCCTTTTCATAATTGAGATCAT
81105698 GGATTACCCGTCCGGGCTAAATC
1 GGATTACCCGTCCGGGCTAAATC
81105721 TTTTCTGCAA
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 129 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (106 bp):
GGATTACCCGTCCGGGCTAAATCCATAATGCACACATATTCTTCAGGAGGCTTGATCATTCAAGG
AACACCCATCCAGGCTAGATCCTTTTCATAATTGAGATCAT
Found at i:81124881 original size:733 final size:733
Alignment explanation
Indices: 81123467--81124931 Score: 2894
Period size: 733 Copynumber: 2.0 Consensus size: 733
81123457 CTAACCTTTC
81123467 ACATTTTTACGATTTAGTCCCTAGGCTCTTATAATGAAACACATGCACTTTCTACCTTACCGAAG
1 ACATTTTTACGATTTAGTCCCTAGGCTCTTATAATGAAACACATGCACTTTCTACCTTACCGAAG
81123532 CCTAGCCGAACACTTTTCCTTCTTATGGTAGCCCACATTATCCATTATTTTCTCATTTCTACCAC
66 CCTAGCCGAACACTTTTCCTTCTTATGGTAGCCCACATTATCCATTATTTTCTCATTTCTACCAC
81123597 ACATTTACATCTTTTGTAAAATAGTCCCTATAAGGGTTTTCATGAAAATCAACTAGGAAAAGATG
131 ACATTTACATCTTTTGTAAAATAGTCCCTATAAGGGTTTTCATGAAAATCAACTAGGAAAAGATG
81123662 TTTAATACACATTCATCTTTCATATTCCTCCATAATCCATCAAAATACAAGCAACTCATGCATGG
196 TTTAATACACATTCATCTTTCATATTCCTCCATAATCCATCAAAATACAAGCAACTCATGCATGG
81123727 GTAAATTTTTAAACATGAACCCTAGCATGAAATATGGGTAGAAATGGAGAGAGCAAGCTACTGAG
261 GTAAATTTTTAAACATGAACCCTAGCATGAAATATGGGTAGAAATGGAGAGAGCAAGCTACTGAG
81123792 ATTTCAAAAATTCGAAGAGCATGAAAAACAGGGCTTGGGAGCACTTACTATTGAGCTTGGAAAGC
326 ATTTCAAAAATTCGAAGAGCATGAAAAACAGGGCTTGGGAGCACTTACTATTGAGCTTGGAAAGC
81123857 TTGAAAACCCTAGCTGTGGTGACTTGGGAATTTTAGCTGGATGGAGGAGGAAAATGAGCTGATTT
391 TTGAAAACCCTAGCTGTGGTGACTTGGGAATTTTAGCTGGATGGAGGAGGAAAATGAGCTGATTT
81123922 CGATTCATTTTCCCATTTTATTTCATTAAAAAGGCAAATGACCAAAATGCCCTCATGCCCTTTCT
456 CGATTCATTTTCCCATTTTATTTCATTAAAAAGGCAAATGACCAAAATGCCCTCATGCCCTTTCT
81123987 TTAAAATTTCATCCATGCAAGCCCATTTTTGTCCAAAAATTTAGAATTTGGGTAAATTGCTCTCC
521 TTAAAATTTCATCCATGCAAGCCCATTTTTGTCCAAAAATTTAGAATTTGGGTAAATTGCTCTCC
*
81124052 AAAACCTTCTAATTCATAACCCAAAGCAATTTCACAGAAAGTGCTTCTAGAATCCAAGTTTTGCA
586 AAAACCTTCTAATTCATAACCCAAAGCAATTTCACAGAAAGTGCTTCTAGAAACCAAGTTTTGCA
*
81124117 ATTTATTCAATTTAGACCCTAATTCCCAATTGAACACCTTGCTCAAAGAATTTCTTCATGAAACT
651 ATTTATTCAATTTAGACCCCAATTCCCAATTGAACACCTTGCTCAAAGAATTTCTTCATGAAACT
81124182 TTAACACATGCTTAGACG
716 TTAACACATGCTTAGACG
81124200 ACATTTTTACGATTTAGTCCCTAGGCTCTTATAATGAAACACATGCACTTTCTACCTTACCGAAG
1 ACATTTTTACGATTTAGTCCCTAGGCTCTTATAATGAAACACATGCACTTTCTACCTTACCGAAG
81124265 CCTAGCCGAACACTTTTCCTTCTTATGGTAGCCCACATTATCCATTATTTTCTCATTTCTACCAC
66 CCTAGCCGAACACTTTTCCTTCTTATGGTAGCCCACATTATCCATTATTTTCTCATTTCTACCAC
81124330 ACATTTACATCTTTTGTAAAATAGTCCCTATAAGGGTTTTCATGAAAATCAACTAGGAAAAGATG
131 ACATTTACATCTTTTGTAAAATAGTCCCTATAAGGGTTTTCATGAAAATCAACTAGGAAAAGATG
81124395 TTTAATACACATTCATCTTTCATATTCCTCCATAATCCATCAAAATACAAGCAACTCATGCATGG
196 TTTAATACACATTCATCTTTCATATTCCTCCATAATCCATCAAAATACAAGCAACTCATGCATGG
81124460 GTAAATTTTTAAACATGAACCCTAGCATGAAATATGGGTAGAAATGGAGAGAGCAAGCTACTGAG
261 GTAAATTTTTAAACATGAACCCTAGCATGAAATATGGGTAGAAATGGAGAGAGCAAGCTACTGAG
81124525 ATTTCAAAAATTCGAAGAGCATGAAAAACAGGGCTTGGGAGCACTTACTATTGAGCTTGGAAAGC
326 ATTTCAAAAATTCGAAGAGCATGAAAAACAGGGCTTGGGAGCACTTACTATTGAGCTTGGAAAGC
81124590 TTGAAAACCCTAGCTGTGGTGACTTGGGAATTTTAGCTGGATGGAGGAGGAAAATGAGCTGATTT
391 TTGAAAACCCTAGCTGTGGTGACTTGGGAATTTTAGCTGGATGGAGGAGGAAAATGAGCTGATTT
81124655 CGATTCATTTTCCCATTTTATTTCATTAAAAAGGCAAATGACCAAAATGCCCTCATGCCCTTTCT
456 CGATTCATTTTCCCATTTTATTTCATTAAAAAGGCAAATGACCAAAATGCCCTCATGCCCTTTCT
81124720 TTAAAATTTCATCCATGCAAGCCCATTTTTGTCCAAAAATTTAGAATTTGGGTAAATTGCTCTCC
521 TTAAAATTTCATCCATGCAAGCCCATTTTTGTCCAAAAATTTAGAATTTGGGTAAATTGCTCTCC
81124785 AAAACCTTCTAATTCATAACCCAAAGCAATTTCACAGAAAGTGCTTCTAGAAACCAAGTTTTGCA
586 AAAACCTTCTAATTCATAACCCAAAGCAATTTCACAGAAAGTGCTTCTAGAAACCAAGTTTTGCA
* *
81124850 ATTTATTCAATTTAGTCCCCAATTTCCAATTGAACACCTTGCTCAAAGAATTTCTTCATGAAACT
651 ATTTATTCAATTTAGACCCCAATTCCCAATTGAACACCTTGCTCAAAGAATTTCTTCATGAAACT
81124915 TTAACACATGCTTAGAC
716 TTAACACATGCTTAGAC
81124932 TCATATTCTA
Statistics
Matches: 728, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
733 728 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32
Consensus pattern (733 bp):
ACATTTTTACGATTTAGTCCCTAGGCTCTTATAATGAAACACATGCACTTTCTACCTTACCGAAG
CCTAGCCGAACACTTTTCCTTCTTATGGTAGCCCACATTATCCATTATTTTCTCATTTCTACCAC
ACATTTACATCTTTTGTAAAATAGTCCCTATAAGGGTTTTCATGAAAATCAACTAGGAAAAGATG
TTTAATACACATTCATCTTTCATATTCCTCCATAATCCATCAAAATACAAGCAACTCATGCATGG
GTAAATTTTTAAACATGAACCCTAGCATGAAATATGGGTAGAAATGGAGAGAGCAAGCTACTGAG
ATTTCAAAAATTCGAAGAGCATGAAAAACAGGGCTTGGGAGCACTTACTATTGAGCTTGGAAAGC
TTGAAAACCCTAGCTGTGGTGACTTGGGAATTTTAGCTGGATGGAGGAGGAAAATGAGCTGATTT
CGATTCATTTTCCCATTTTATTTCATTAAAAAGGCAAATGACCAAAATGCCCTCATGCCCTTTCT
TTAAAATTTCATCCATGCAAGCCCATTTTTGTCCAAAAATTTAGAATTTGGGTAAATTGCTCTCC
AAAACCTTCTAATTCATAACCCAAAGCAATTTCACAGAAAGTGCTTCTAGAAACCAAGTTTTGCA
ATTTATTCAATTTAGACCCCAATTCCCAATTGAACACCTTGCTCAAAGAATTTCTTCATGAAACT
TTAACACATGCTTAGACG
Found at i:81127066 original size:12 final size:12
Alignment explanation
Indices: 81127049--81127073 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81127039 TATCTGCTCT
81127049 GGAACTCACTAA
1 GGAACTCACTAA
81127061 GGAACTCACTAA
1 GGAACTCACTAA
81127073 G
1 G
81127074 TTCTATGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.16
Consensus pattern (12 bp):
GGAACTCACTAA
Found at i:81130511 original size:12 final size:12
Alignment explanation
Indices: 81130494--81130518 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81130484 TATCTGCTCT
81130494 GGAACTCACTAA
1 GGAACTCACTAA
81130506 GGAACTCACTAA
1 GGAACTCACTAA
81130518 G
1 G
81130519 TTCTATGAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.16
Consensus pattern (12 bp):
GGAACTCACTAA
Found at i:81132684 original size:42 final size:42
Alignment explanation
Indices: 81132625--81132708 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
81132615 AGCTTCCCAT
81132625 TCCAATAAGGATATGGCACATGGAAGACTATCTTCACGGTTA
1 TCCAATAAGGATATGGCACATGGAAGACTATCTTCACGGTTA
*
81132667 TCCAATAAGGATATGGCACATGGAATACTATCTTCACGGTTA
1 TCCAATAAGGATATGGCACATGGAAGACTATCTTCACGGTTA
81132709 CATGTTAGAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (42 bp):
TCCAATAAGGATATGGCACATGGAAGACTATCTTCACGGTTA
Found at i:81135815 original size:36 final size:35
Alignment explanation
Indices: 81135724--81135838 Score: 97
Period size: 36 Copynumber: 3.2 Consensus size: 35
81135714 TCCAACTGAA
* * * * *
81135724 ACACCATATCCTCATAAGACCTAGTCCATCCCAAAC
1 ACACCA-ATGCTCATAAGAGCAAATCCATCCAAAAC
* *
81135760 ACACTAAATGCTCATAAGAGCAAATCCATCCGAAAC
1 ACAC-CAATGCTCATAAGAGCAAATCCATCCAAAAC
* * *
81135796 ACACCAATGGCTC-TGAAGAGCTAATCCAACTAAAAC
1 ACACCAAT-GCTCAT-AAGAGCAAATCCATCCAAAAC
81135832 ACACCAA
1 ACACCAA
81135839 AACAGAGAGT
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
35 4 0.06
36 60 0.92
37 1 0.02
ACGTcount: A:0.42, C:0.32, G:0.10, T:0.17
Consensus pattern (35 bp):
ACACCAATGCTCATAAGAGCAAATCCATCCAAAAC
Found at i:81138868 original size:28 final size:28
Alignment explanation
Indices: 81138836--81138947 Score: 104
Period size: 28 Copynumber: 4.0 Consensus size: 28
81138826 TACTTGTATT
*
81138836 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATA
* * *
81138864 TGGCCCATT-AGTCGAATCACCTGT-ATA
1 TGGCCCATTAAGCCCAATCACAT-TCATA
* *
81138891 TGG-CCATTAGGCCCGAATCACATTTATA
1 TGGCCCATTAAGCCC-AATCACATTCATA
* * *
81138919 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATA
81138947 T
1 T
81138948 TCATGCTCAC
Statistics
Matches: 68, Mismatches: 11, Indels: 10
0.76 0.12 0.11
Matches are distributed among these distances:
26 5 0.07
27 18 0.26
28 35 0.51
29 10 0.15
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAAGCCCAATCACATTCATA
Found at i:81141771 original size:12 final size:12
Alignment explanation
Indices: 81141754--81141779 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
81141744 GATGAATAGG
81141754 AATGACTACAGA
1 AATGACTACAGA
81141766 AATGACTACAGA
1 AATGACTACAGA
81141778 AA
1 AA
81141780 CGACATATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.15
Consensus pattern (12 bp):
AATGACTACAGA
Found at i:81146482 original size:26 final size:24
Alignment explanation
Indices: 81146453--81146524 Score: 83
Period size: 24 Copynumber: 2.9 Consensus size: 24
81146443 GACTCACCAT
81146453 AGCTTGGATGAGCTTACTGATTTATC
1 AGCTTGGATGAGCTTACTG-TTT-TC
* * *
81146479 AGCTCGTAAGAGCTTACTGTTTTC
1 AGCTTGGATGAGCTTACTGTTTTC
81146503 AGCTT-GATAGAGCTTACTGTTT
1 AGCTTGGAT-GAGCTTACTGTTT
81146525 CTGCTCGATA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
23 1 0.03
24 19 0.49
25 3 0.08
26 16 0.41
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (24 bp):
AGCTTGGATGAGCTTACTGTTTTC
Found at i:81146514 original size:24 final size:24
Alignment explanation
Indices: 81146462--81146547 Score: 97
Period size: 24 Copynumber: 3.5 Consensus size: 24
81146452 TAGCTTGGAT
81146462 GAGCTTACTGATTTATCAGCTCG-TAA
1 GAGCTTACTG-TTT-TCAGCTCGAT-A
*
81146488 GAGCTTACTGTTTTCAGCTTGATA
1 GAGCTTACTGTTTTCAGCTCGATA
*
81146512 GAGCTTACTG-TTTCTGCTCGATA
1 GAGCTTACTGTTTTCAGCTCGATA
81146535 -AGGCTTACTGTTT
1 GA-GCTTACTGTTT
81146548 CTGTAAAACC
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
22 1 0.02
23 19 0.35
24 20 0.37
25 4 0.07
26 10 0.19
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (24 bp):
GAGCTTACTGTTTTCAGCTCGATA
Found at i:81146516 original size:50 final size:47
Alignment explanation
Indices: 81146453--81146547 Score: 122
Period size: 47 Copynumber: 2.0 Consensus size: 47
81146443 GACTCACCAT
81146453 AGCTTGGATGAGCTTACTGATTTATCAGCTCG-TAAGAGCTTACTGTTTTC
1 AGCTTGGATGAGCTTACTG--TT-TCAGCTCGATAAG-GCTTACTGTTTTC
*
81146503 AGCTT-GATAGAGCTTACTGTTTCTGCTCGATAAGGCTTACTGTTT
1 AGCTTGGAT-GAGCTTACTGTTTCAGCTCGATAAGGCTTACTGTTT
81146548 CTGTAAAACC
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
47 18 0.43
48 6 0.14
49 3 0.07
50 15 0.36
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (47 bp):
AGCTTGGATGAGCTTACTGTTTCAGCTCGATAAGGCTTACTGTTTTC
Found at i:81146534 original size:23 final size:23
Alignment explanation
Indices: 81146487--81146550 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 23
81146477 TCAGCTCGTA
* *
81146487 AGAGCTTACTGTTTTCAGCTTGAT
1 AGAGCTTACTG-TTTCTGCTCGAT
81146511 AGAGCTTACTGTTTCTGCTCGAT
1 AGAGCTTACTGTTTCTGCTCGAT
81146534 A-AGGCTTACTGTTTCTG
1 AGA-GCTTACTGTTTCTG
81146551 TAAAACCCCG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 1 0.03
23 25 0.68
24 11 0.30
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.41
Consensus pattern (23 bp):
AGAGCTTACTGTTTCTGCTCGAT
Found at i:81147929 original size:27 final size:27
Alignment explanation
Indices: 81147899--81148076 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81147889 ATATTGAGTC
* * * *
81147899 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
81147926 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81147953 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
81147981 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
81148008 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
81148035 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81148062 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81148077 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:81148038 original size:82 final size:81
Alignment explanation
Indices: 81147920--81148075 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81147910 TGCTATATAA
* *
81147920 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
81147985 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
81148002 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
81148066 CACTTAGTGC
65 CACTTAGTGC
81148076 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:81156119 original size:27 final size:27
Alignment explanation
Indices: 81156089--81156266 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81156079 ATATTGAGTC
* * * *
81156089 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
81156116 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81156143 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
81156171 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
81156198 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
81156225 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81156252 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81156267 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:81156228 original size:82 final size:81
Alignment explanation
Indices: 81156110--81156265 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81156100 TGCTATATAA
* *
81156110 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
81156175 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
81156192 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
81156256 CACTTAGTGC
65 CACTTAGTGC
81156266 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:81158154 original size:23 final size:23
Alignment explanation
Indices: 81158122--81158173 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
81158112 GGCTGTCACA
*
81158122 GTTTCAGCTCAATAGAGCTTACC
1 GTTTCAGCTCAATAGAGCTGACC
* *
81158145 GTTTCTGCTCGATAGAGCTGACC
1 GTTTCAGCTCAATAGAGCTGACC
81158168 GTTTCA
1 GTTTCA
81158174 ACTTATTAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (23 bp):
GTTTCAGCTCAATAGAGCTGACC
Found at i:81161790 original size:42 final size:42
Alignment explanation
Indices: 81161722--81161803 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
81161712 TAAAAAGGTC
*
81161722 CACACGGGTAGACACACGGGCATACGGTATGGCCGTGTGTGA
1 CACACGGGTAGACACACGGGCATACGGGATGGCCGTGTGTGA
* * *
81161764 CACACGGGTAG-CCCTATGGGCGTACGGGATGGCCGTGTGT
1 CACACGGGTAGACAC-ACGGGCATACGGGATGGCCGTGTGT
81161804 CCCCTGAACC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 2 0.06
42 33 0.94
ACGTcount: A:0.20, C:0.24, G:0.38, T:0.18
Consensus pattern (42 bp):
CACACGGGTAGACACACGGGCATACGGGATGGCCGTGTGTGA
Found at i:81187224 original size:27 final size:27
Alignment explanation
Indices: 81187191--81187261 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
81187181 CGTTCCAACC
*
81187191 CACAGCTCGTGTGAGCAAGCCTATTTT
1 CACAGCTCGTGTGAGCAAGCCCATTTT
* * *
81187218 CATAGCTCGTGTGAGTAGGCCCATTTT
1 CACAGCTCGTGTGAGCAAGCCCATTTT
*
81187245 CACAGTTCGTGTGAGCA
1 CACAGCTCGTGTGAGCA
81187262 TACATGTACA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (27 bp):
CACAGCTCGTGTGAGCAAGCCCATTTT
Found at i:81197231 original size:23 final size:26
Alignment explanation
Indices: 81197187--81197239 Score: 76
Period size: 23 Copynumber: 2.2 Consensus size: 26
81197177 GTGGTTTATG
*
81197187 GTGGAGGAGAAAAGAGGCGAATGATA
1 GTGGAGGAGAAAAGAGGCGAATGACA
81197213 GTGGAGG-GAAAA-AGG-GAATGACA
1 GTGGAGGAGAAAAGAGGCGAATGACA
81197236 GTGG
1 GTGG
81197240 TACTTGCGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 11 0.42
24 3 0.12
25 5 0.19
26 7 0.27
ACGTcount: A:0.40, C:0.04, G:0.45, T:0.11
Consensus pattern (26 bp):
GTGGAGGAGAAAAGAGGCGAATGACA
Found at i:81202517 original size:28 final size:28
Alignment explanation
Indices: 81202480--81202561 Score: 110
Period size: 28 Copynumber: 2.9 Consensus size: 28
81202470 GCAATCAAAT
* *
81202480 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
81202508 ATGGCACTTAATGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
81202536 ATGACACTTAGTGTGCAAAATATTGA
1 ATGGCACTTAGTGTGCGAAATATTGA
81202562 ATGATTAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:81202867 original size:69 final size:70
Alignment explanation
Indices: 81202735--81202867 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
81202725 TAGTTTATTA
* * * * *
81202735 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTATAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
81202800 CTTAG
66 CTTAG
81202805 CTAATTAATATGCTGCTATAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTATAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
81202868 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 36 0.62
70 22 0.38
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTATAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:81203582 original size:28 final size:28
Alignment explanation
Indices: 81203540--81203604 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
81203530 TCAGTGTACG
*
81203540 AAATATTGAGAATGACACTTAATGTGCG
1 AAATATTGAGAATGACACTTAATGTGCA
* *
81203568 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAATGTGCA
81203596 AAATATTGA
1 AAATATTGA
81203605 ATGATTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAATGTGCA
Found at i:81203755 original size:39 final size:39
Alignment explanation
Indices: 81203704--81204103 Score: 385
Period size: 39 Copynumber: 10.2 Consensus size: 39
81203694 TAAGTCCCAA
** * *
81203704 AGGCATTCGTGCTGGTGTTATATCCGGGC-TAAAGTCCCGC
1 AGGC-TTCGTGCTGGAATTGTATCCGGACTTAAAGT-CCGC
* * *
81203744 AGGCTTTGTGCTAGAATTGTATCCGGACTTAAGGTCCGC
1 AGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGTCCGC
* *
81203783 AGGCTTCATGCTGGAATTGTATCCGGACTTAAGGTCCGC
1 AGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGTCCGC
* * * *
81203822 AGGCTAT-ATGCTGGAATTATATCCGAGA-TTAAAGACCCGT
1 AGGCT-TCGTGCTGGAATTGTATCCG-GACTTAAAG-TCCGC
*
81203862 AGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGC
1 AGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGTCCGC
* *
81203901 AGGCTTCGTGCTAGAATTGTATCCGGACTTAAGGTCCGC
1 AGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGTCCGC
* * * *
81203940 AGACTTCATGCTGGAATTGTATCCGGGCTTAAAGACCAGC
1 AGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGTCC-GC
81203980 AGGCTTCGTGCTGGAATTGTATCCGGACTT-AAGATCCGC
1 AGGCTTCGTGCTGGAATTGTATCCGGACTTAAAG-TCCGC
* * * * * ** * *
81204019 AGGCGTCGTACTGGTACTATATCTAGACTTAAGGTCTGC
1 AGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGTCCGC
* * * * * *
81204058 AGGCTTCGTACTGGTACTATATCCGGGCTTAAAGTCCCGT
1 AGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGT-CCGC
81204098 AGGCTT
1 AGGCTT
81204104 TGTGTTGGTG
Statistics
Matches: 304, Mismatches: 46, Indels: 20
0.82 0.12 0.05
Matches are distributed among these distances:
39 222 0.73
40 82 0.27
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (39 bp):
AGGCTTCGTGCTGGAATTGTATCCGGACTTAAAGTCCGC
Found at i:81203892 original size:118 final size:118
Alignment explanation
Indices: 81203721--81204103 Score: 509
Period size: 118 Copynumber: 3.3 Consensus size: 118
81203711 CGTGCTGGTG
* * *
81203721 TTATATCCGGGC-TAAAGTCCCGCAGGCTTTGTGCTAGAATTGTATCCGGACTTAAGGTCCGCAG
1 TTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAG
*
81203785 GCTTCATGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTAT-ATGCTGGAA
66 GCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCT-TCATGCTGGAA
* * *
81203838 TTATATCCGAGATTAAAGACCCGTAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAG
1 TTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAG
* *
81203903 GCTTCGTGCTAGAATTGTATCCGGACTTAAGGTCCGCAGACTTCATGCTGGAA
66 GCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAA
* * *
81203956 TTGTATCCGGGCTTAAAGACCAGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAG
1 TTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAG
* * * * * ** * * * *
81204021 GCGTCGTACTGGTACTATATCTAGACTTAAGGTCTGCAGGCTTCGTACTGGTA
66 GCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAA
* * *
81204074 CTATATCCGGGCTTAAAGTCCCGTAGGCTT
1 TTATATCCGGGCTTAAAGACCCGCAGGCTT
81204104 TGTGTTGGTG
Statistics
Matches: 231, Mismatches: 33, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
117 11 0.05
118 220 0.95
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (118 bp):
TTATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAG
GCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAA
Found at i:81211991 original size:23 final size:23
Alignment explanation
Indices: 81211963--81212009 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
81211953 AAGCTGATGG
**
81211963 ACAGTAAACTCTATTGAGCTGAA
1 ACAGTAAACTCTAACGAGCTGAA
*
81211986 ACAGTAAGCTCTAACGAGCTGAA
1 ACAGTAAACTCTAACGAGCTGAA
81212009 A
1 A
81212010 ATAGTAAGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21
Consensus pattern (23 bp):
ACAGTAAACTCTAACGAGCTGAA
Found at i:81212026 original size:24 final size:23
Alignment explanation
Indices: 81211978--81212029 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
81211968 AAACTCTATT
*
81211978 GAGCTGAAACAGTAAGCTCTAAC
1 GAGCTGAAACAGTAAGCTATAAC
* *
81212001 GAGCTGAAAATAGTAAGCTATTAC
1 GAGCTG-AAACAGTAAGCTATAAC
81212025 GAGCT
1 GAGCT
81212030 TAACGGTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 6 0.24
24 19 0.76
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTATAAC
Found at i:81214727 original size:29 final size:30
Alignment explanation
Indices: 81214694--81214756 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 30
81214684 TTGAAATTGC
*
81214694 AAATT-AGGGATTTAATTGTAAAATA-TGAA
1 AAATTCAGGG-TTAAATTGTAAAATATTGAA
* *
81214723 AAATTCATGGTTAAATTGTGAAATATTGAA
1 AAATTCAGGGTTAAATTGTAAAATATTGAA
81214753 AAAT
1 AAAT
81214757 ATGGGCTGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 18 0.62
30 11 0.38
ACGTcount: A:0.48, C:0.02, G:0.16, T:0.35
Consensus pattern (30 bp):
AAATTCAGGGTTAAATTGTAAAATATTGAA
Found at i:81216727 original size:19 final size:20
Alignment explanation
Indices: 81216699--81216739 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
81216689 GCATGTGTCC
*
81216699 TCTATATTTT-GAAAAATTT
1 TCTATATTTTCCAAAAATTT
*
81216718 TCTATGTTTTCCAAAAATTT
1 TCTATATTTTCCAAAAATTT
81216738 TC
1 TC
81216740 CGAAGTTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.32, C:0.12, G:0.05, T:0.51
Consensus pattern (20 bp):
TCTATATTTTCCAAAAATTT
Found at i:81220087 original size:43 final size:43
Alignment explanation
Indices: 81220005--81220150 Score: 206
Period size: 43 Copynumber: 3.4 Consensus size: 43
81219995 GATAAATCCC
* *
81220005 GCAGGCTTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
81220046 GCAGGCTTAGTGCCGGTGATGTGTATTCGTGCCTTCATGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
81220089 GCAGGCTTAGTGTCGGTGATGTGTATTCGGGCCTTTGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
81220132 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
81220151 AATGATATGT
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
41 16 0.17
42 2 0.02
43 74 0.80
ACGTcount: A:0.14, C:0.21, G:0.33, T:0.32
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:81220602 original size:130 final size:130
Alignment explanation
Indices: 81220369--81220628 Score: 493
Period size: 130 Copynumber: 2.0 Consensus size: 130
81220359 GTGAAAATGA
* *
81220369 GATGAAAGAGAAGTGTTTGAGATGTATAATTATATACGTTCAAATTATGTTAGTACTTAATTGAT
1 GATGAAAGAAAAGTGTTTGAGATGTATAATTATATACGTTCAAATGATGTTAGTACTTAATTGAT
81220434 ATGAATATGTTATATGGAACTTGTTGACTTGATTATTCGGGCCTTTGAGCTTAGCAAACTATAAT
66 ATGAATATGTTATATGGAACTTGTTGACTTGATTATTCGGGCCTTTGAGCTTAGCAAACTATAAT
*
81220499 GATGAAAGAAAAGTGTTTGAGATGTATAATTATATACGTTCGAATGATGTTAGTACTTAATTGAT
1 GATGAAAGAAAAGTGTTTGAGATGTATAATTATATACGTTCAAATGATGTTAGTACTTAATTGAT
81220564 ATGAATATGTTATATGGAACTTGTTGACTTGATTATTCGGGCCTTTGAGCTTAGCAAACTATAAT
66 ATGAATATGTTATATGGAACTTGTTGACTTGATTATTCGGGCCTTTGAGCTTAGCAAACTATAAT
81220629 ACCGGTGAGA
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 127 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.38
Consensus pattern (130 bp):
GATGAAAGAAAAGTGTTTGAGATGTATAATTATATACGTTCAAATGATGTTAGTACTTAATTGAT
ATGAATATGTTATATGGAACTTGTTGACTTGATTATTCGGGCCTTTGAGCTTAGCAAACTATAAT
Found at i:81221939 original size:48 final size:48
Alignment explanation
Indices: 81221845--81221948 Score: 122
Period size: 48 Copynumber: 2.2 Consensus size: 48
81221835 TGTGCTAAGC
* * *
81221845 GTAAGACCTATCTGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
**
81221893 GTAAGACCTATC-GGGAATAGGCATCAGCAC-GGGCAGAGCAGAGCTAGT
1 GTAAGACCTATCTGGG-ATAGGCATCAGCACAGCCCAGAG-AGAGCTAGT
*
81221941 ATAAGACC
1 GTAAGACC
81221949 ATAGTTGGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 8 0.17
48 40 0.83
ACGTcount: A:0.30, C:0.22, G:0.31, T:0.17
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
Found at i:81222261 original size:47 final size:47
Alignment explanation
Indices: 81222188--81222280 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
81222178 TGTAACGAAT
81222188 TGGAAATTTGAAATGTTTGAACCAATGTGCGTAATATTATGATGAGC
1 TGGAAATTTGAAATGTTTGAACCAATGTGCGTAATATTATGATGAGC
*
81222235 TGGAAATTTGAAATGTTTGAATCAATGTGCGTAATATTATGATGAG
1 TGGAAATTTGAAATGTTTGAACCAATGTGCGTAATATTATGATGAG
81222281 TCATAAAGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.35
Consensus pattern (47 bp):
TGGAAATTTGAAATGTTTGAACCAATGTGCGTAATATTATGATGAGC
Found at i:81224491 original size:110 final size:110
Alignment explanation
Indices: 81224298--81224520 Score: 419
Period size: 110 Copynumber: 2.0 Consensus size: 110
81224288 CAGGGGAAAC
*
81224298 TTTAAGAAAAATATTGTATTCATTGGCCAAACCAAAAATTCTGAAAATTTTATGGATGAAAGATA
1 TTTAAGAAAAATATGGTATTCATTGGCCAAACCAAAAATTCTGAAAATTTTATGGATGAAAGATA
81224363 TATGAGTCTATCTTTAGGGAAAATTAACGGCACTTGATTTGGAGT
66 TATGAGTCTATCTTTAGGGAAAATTAACGGCACTTGATTTGGAGT
* *
81224408 TTTAAGAAAAATCTGGTATTGATTGGCCAAACCAAAAATTCTGAAAATTTTATGGATGAAAGATA
1 TTTAAGAAAAATATGGTATTCATTGGCCAAACCAAAAATTCTGAAAATTTTATGGATGAAAGATA
81224473 TATGAGTCTATCTTTAGGGAAAATTAACGGCACTTGATTTGGAGT
66 TATGAGTCTATCTTTAGGGAAAATTAACGGCACTTGATTTGGAGT
81224518 TTT
1 TTT
81224521 GTAACTCTAG
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
110 110 1.00
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.34
Consensus pattern (110 bp):
TTTAAGAAAAATATGGTATTCATTGGCCAAACCAAAAATTCTGAAAATTTTATGGATGAAAGATA
TATGAGTCTATCTTTAGGGAAAATTAACGGCACTTGATTTGGAGT
Found at i:81225868 original size:43 final size:43
Alignment explanation
Indices: 81225799--81226103 Score: 420
Period size: 43 Copynumber: 7.1 Consensus size: 43
81225789 TATAAATTCC
* * * * *
81225799 GCAGGCCTAGTGCTGGT-AT-TATATTCGAGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTA
* * *
81225840 GCATGCTTAGTGCCGGTGATGTGTATTCGAGCTTTTGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTA
*
81225883 GCAGGCTTGGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTA
* * *
81225926 GCAGGCTTAGTGCCGGTGATGTGTATTCGAGCTTTTATGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTA
*
81225969 GCAGGCTTGGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTA
* *
81226012 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGTCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTA
*
81226055 GCAGGCTTCA-TACCGGTGATGTGTATTCGGGCCTTCT-TGCCTA
1 GCAGGCTT-AGTGCCGGTGATGTGTATTCGGGCCTT-TGTGCCTA
81226098 GCAGGC
1 GCAGGC
81226104 GTAATACCGG
Statistics
Matches: 236, Mismatches: 24, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
41 14 0.06
42 2 0.01
43 219 0.93
44 1 0.00
ACGTcount: A:0.13, C:0.22, G:0.32, T:0.33
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTA
Found at i:81226500 original size:45 final size:42
Alignment explanation
Indices: 81226433--81226540 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 42
81226423 TTGACTTGAT
* *
81226433 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
**
81226478 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
81226520 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
81226541 ACAGGCGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 34 0.60
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:81229026 original size:17 final size:18
Alignment explanation
Indices: 81229004--81229038 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
81228994 TTTTAGGCCT
81229004 TGTGGG-CCACATGGGCA
1 TGTGGGCCCACATGGGCA
81229021 TGTGGGCCCACATGGGCA
1 TGTGGGCCCACATGGGCA
81229039 AATGACATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.17, C:0.26, G:0.40, T:0.17
Consensus pattern (18 bp):
TGTGGGCCCACATGGGCA
Found at i:81231037 original size:42 final size:42
Alignment explanation
Indices: 81230972--81231055 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
81230962 TAAAGAAAGA
81230972 TAAATTTTTGAATACAAGACCAAGTAATACAGCTGCTAGAGG
1 TAAATTTTTGAATACAAGACCAAGTAATACAGCTGCTAGAGG
81231014 TAAATTTTTGAATACAATG-CCAAGTAATACAGCTGCTAGAGG
1 TAAATTTTTGAATACAA-GACCAAGTAATACAGCTGCTAGAGG
81231056 GAGACCATCT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
42 40 0.98
43 1 0.02
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.27
Consensus pattern (42 bp):
TAAATTTTTGAATACAAGACCAAGTAATACAGCTGCTAGAGG
Found at i:81234448 original size:24 final size:24
Alignment explanation
Indices: 81234420--81234471 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
81234410 TCACGGTTTC
81234420 GAAGAGGCAATGTGGGAACCCAAG
1 GAAGAGGCAATGTGGGAACCCAAG
81234444 GAAGAGGCAATGTGGGAACCCAAG
1 GAAGAGGCAATGTGGGAACCCAAG
81234468 GAAG
1 GAAG
81234472 CTATGAGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.38, C:0.15, G:0.38, T:0.08
Consensus pattern (24 bp):
GAAGAGGCAATGTGGGAACCCAAG
Found at i:81243264 original size:11 final size:11
Alignment explanation
Indices: 81243241--81243275 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
81243231 CACTTACAAG
81243241 CATTAACAAACA
1 CATTAA-AAACA
81243253 CATTAAAAACA
1 CATTAAAAACA
*
81243264 CATTAAACACA
1 CATTAAAAACA
81243275 C
1 C
81243276 TATATACTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 16 0.73
12 6 0.27
ACGTcount: A:0.57, C:0.26, G:0.00, T:0.17
Consensus pattern (11 bp):
CATTAAAAACA
Found at i:81243498 original size:40 final size:40
Alignment explanation
Indices: 81243442--81243555 Score: 174
Period size: 40 Copynumber: 2.8 Consensus size: 40
81243432 GAGTTTAATA
*
81243442 AAAATAAAGTCTAGCAAATCAATAATTAACTAAGATGAGT
1 AAAATAAAGTCCAGCAAATCAATAATTAACTAAGATGAGT
81243482 AAAATAAAGTCCAGCAAATCAATAATTAACTAAGATGAGT
1 AAAATAAAGTCCAGCAAATCAATAATTAACTAAGATGAGT
** * *
81243522 TTAATAAAGTCCAGCAACTCAATTATTAAACTAA
1 AAAATAAAGTCCAGCAAATCAATAATT-AACTAA
81243556 AATTATAAGC
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 62 0.91
41 6 0.09
ACGTcount: A:0.51, C:0.13, G:0.11, T:0.25
Consensus pattern (40 bp):
AAAATAAAGTCCAGCAAATCAATAATTAACTAAGATGAGT
Found at i:81247223 original size:8 final size:8
Alignment explanation
Indices: 81247189--81247237 Score: 55
Period size: 8 Copynumber: 6.1 Consensus size: 8
81247179 TAATTCTTTA
*
81247189 AAAATTAT
1 AAAATAAT
81247197 AAAGAT-AT
1 AAA-ATAAT
* *
81247205 AATATATT
1 AAAATAAT
81247213 AAAATAAT
1 AAAATAAT
81247221 AAAATAAT
1 AAAATAAT
81247229 AAAATAAT
1 AAAATAAT
81247237 A
1 A
81247238 TCTTTATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
7 2 0.06
8 31 0.89
9 2 0.06
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (8 bp):
AAAATAAT
Found at i:81257744 original size:48 final size:47
Alignment explanation
Indices: 81257673--81257987 Score: 302
Period size: 48 Copynumber: 6.6 Consensus size: 47
81257663 AATTATCGAC
* * *
81257673 GCCATGTCCTAGACATGGTCTTACACTAGCTCTTGTCTCAAT-GCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTC-TCTAT-AATGGCCAAT
** *
81257721 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTGTGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TATAATGGCCAAT
* * *
81257769 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAA-CGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TAT-AATGGCCAAT
* * * *
81257817 GCCATGTCCTAGACATGGTTTTACACTGGCTCTC-ATAATCGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCTATAATGGCCAAT
*
81257863 GCCATGTCCCAGACATGGTCTTACACT-GC-CTCTTATAATATGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TAT-A-ATGGCCAAT
* * ***
81257911 GCCATGTCCCAGACATGGTCTTACACT-GGT-TCCATAATGTGGCTGTT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCTATAA--TGGCCAAT
* *
81257958 GCCATTTCCCAGACATAGTCTTACACTAGC
1 GCCATGTCCCAGACATGGTCTTACACTAGC
81257988 ACACATATCA
Statistics
Matches: 227, Mismatches: 28, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
44 3 0.01
45 5 0.02
46 37 0.16
47 36 0.16
48 146 0.64
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCTCTATAATGGCCAAT
Found at i:81257841 original size:96 final size:95
Alignment explanation
Indices: 81257673--81257997 Score: 379
Period size: 96 Copynumber: 3.4 Consensus size: 95
81257663 AATTATCGAC
* * *** * *
81257673 GCCATGTCCTAGACATGGTCTTACACTAGCTCTTGTCTCAATGCCAATGCCATGTCCCAGACATG
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCAATGCCATGTCCCAGACATG
*
81257738 GTCTTACACTAGCTCTCATATTGTGGCCGAT
66 GTCTTACACTGGCTCTCATA-TGTGGCCGAT
*
81257769 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCAATGCCATGTCCTAGACATG
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCAATGCCATGTCCCAGACATG
* * * *
81257834 GTTTTACACTGGCTCTCATA-ATCGCCAAT
66 GTCTTACACTGGCTCTCATATGTGGCCGAT
* * * * *
81257863 GCCATGTCCCAGACATGGTCTTACACT-GC-CTCTTATAATATGGCCGATGCCATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA-A-CGCCAATGCCATGTCCCAGACA
* * *
81257926 TGGTCTTACACTGGTTC-CATAATGTGGCTGTT
64 TGGTCTTACACTGGCTCTCAT-ATGTGGCCGAT
* *
81257958 GCCATTTCCCAGACATAGTCTTACACTAGCACACATATCA
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
81257998 CCCAAATGTC
Statistics
Matches: 192, Mismatches: 31, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
92 6 0.03
93 6 0.03
94 68 0.35
95 29 0.15
96 77 0.40
97 6 0.03
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (95 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCAATGCCATGTCCCAGACATG
GTCTTACACTGGCTCTCATATGTGGCCGAT
Found at i:81257931 original size:142 final size:142
Alignment explanation
Indices: 81257673--81257937 Score: 419
Period size: 142 Copynumber: 1.9 Consensus size: 142
81257663 AATTATCGAC
81257673 GCCATGTCCTAGACATGGTCTTACACTAGCTCTTGTCTCAATGCCAATGCCATGTCCCAGACATG
1 GCCATGTCCTAGACATGGTCTTACACTAGCTC-T-TCTCAATGCCAATGCCATGTCCCAGACATG
* *
81257738 GTCTTACACTAGCTCTCATATTGTGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACAC
64 GTCTTACACTAGCTCTCATAATATGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACAC
81257803 ATATCAACGCCAAT
129 ATATCAACGCCAAT
* *
81257817 GCCATGTCCTAGACATGGTTTTACACTGGCTC-TCAT-AATCGCCAATGCCATGTCCCAGACATG
1 GCCATGTCCTAGACATGGTCTTACACTAGCTCTTC-TCAAT-GCCAATGCCATGTCCCAGACATG
*
81257880 GTCTTACACT-GCCTCTTATAATATGGCCGATGCCATGTCCCAGACATGGTCTTACACT
64 GTCTTACACTAG-CTCTCATAATATGGCCGATGCCATGTCCCAGACATGGTCTTACACT
81257938 GGTTCCATAA
Statistics
Matches: 113, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
141 6 0.05
142 77 0.68
144 30 0.27
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (142 bp):
GCCATGTCCTAGACATGGTCTTACACTAGCTCTTCTCAATGCCAATGCCATGTCCCAGACATGGT
CTTACACTAGCTCTCATAATATGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACAT
ATCAACGCCAAT
Found at i:81263261 original size:8 final size:9
Alignment explanation
Indices: 81263239--81263266 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
81263229 GTTGAGGAAT
81263239 TGGGGGAGG
1 TGGGGGAGG
81263248 TGGGGGAGG
1 TGGGGGAGG
81263257 TGGGGGAGG
1 TGGGGGAGG
81263266 T
1 T
81263267 TGAGCGTTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.75, T:0.14
Consensus pattern (9 bp):
TGGGGGAGG
Found at i:81267877 original size:77 final size:77
Alignment explanation
Indices: 81267682--81267915 Score: 284
Period size: 77 Copynumber: 3.1 Consensus size: 77
81267672 TTTCGTAAAT
* * * * *
81267682 AATACAAAGTTTATTATTTAAATTG--CAAGAAACTCC-TAAATTTAATAATTGAAATA-GCGAA
1 AATACAAAGTTTACTATTTAAATTGTAAAAAAAAC-CCATAAAATTAATAACT-AAATAGGC-AA
81267743 AAAA-TCATTACATA
63 AAAAGTCATTACATA
**
81267757 AATACAAAGTTGT-CTATTTAAATTGTAAAAAAAAATTCATAAAATTAATAACTAAATAGGCAAA
1 AATACAAAGTT-TACTATTTAAATTGT-AAAAAAAACCCATAAAATTAATAACTAAATAGGCAAA
81267821 AAAGTCATTACATA
64 AAAGTCATTACATA
*
81267835 AATACAAAGTTTACTATTTAAATTGTAAAAAAAACCCATAAAATTAATAACTAAA-ATGGAAAAA
1 AATACAAAGTTTACTATTTAAATTGTAAAAAAAACCCATAAAATTAATAACTAAATA-GGCAAAA
*
81267899 AAGTCATTATATA
65 AAGTCATTACATA
81267912 AATA
1 AATA
81267916 TGAAGATATT
Statistics
Matches: 139, Mismatches: 11, Indels: 16
0.84 0.07 0.10
Matches are distributed among these distances:
75 22 0.16
76 2 0.01
77 62 0.45
78 53 0.38
ACGTcount: A:0.53, C:0.09, G:0.07, T:0.30
Consensus pattern (77 bp):
AATACAAAGTTTACTATTTAAATTGTAAAAAAAACCCATAAAATTAATAACTAAATAGGCAAAAA
AGTCATTACATA
Found at i:81268153 original size:33 final size:32
Alignment explanation
Indices: 81268110--81268182 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 32
81268100 AACTTGAGCA
* *
81268110 GGAAGTAGTGGAGTACAGTGGTGGATACAGGCT
1 GGAAGGAGTGGAGTACAGCGGTGGATA-AGGCT
* *
81268143 GGGAGGAGTGGAGTACAGCGGTGGATAGGGCT
1 GGAAGGAGTGGAGTACAGCGGTGGATAAGGCT
81268175 GGAAGGAG
1 GGAAGGAG
81268183 CAGAATATTG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
32 11 0.31
33 24 0.69
ACGTcount: A:0.26, C:0.08, G:0.49, T:0.16
Consensus pattern (32 bp):
GGAAGGAGTGGAGTACAGCGGTGGATAAGGCT
Found at i:81270361 original size:104 final size:102
Alignment explanation
Indices: 81270209--81270539 Score: 323
Period size: 104 Copynumber: 3.3 Consensus size: 102
81270199 ACATTATATA
* * *
81270209 AAAACTACATTA--AAAAAATCACAAAA-ACTAAACTAAACACTAAGAATTTATATAACTTAATC
1 AAAATTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAA-TTATATAACCTAATC
81270271 ATAAATTACTAACAAAATAACTATAAAATTATTTTTTTT
65 ATAAA-TACTAACAAAATAACTATAAAATTATTTTTTTT
* *
81270310 AAAATTACTTTACTAAAAAATCACAAAACCCTAAACTAAACACTAACAATT-TATAACCTAATCC
1 AAAATTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTATATAACCTAAT--
* *
81270374 CATATAATACTAACAAAATAAATAACTAAAA-CA-TTTTTTT
64 CATA-AATACTAACAAAATAACT-A-TAAAATTATTTTTTTT
* * * * * * *
81270414 AAAA-GAAATTAC------ATTACTAAACAAT-AACAAAACACTAACAATTA-ATAACCAAATCA
1 AAAATTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTATATAACCTAATCA
**
81270470 TAAACTACTAACAAAATAACTATAAAATTATTTTTTGA
66 TAAA-TACTAACAAAATAACTATAAAATTATTTTTTTT
*
81270508 AAAATTTACATTACTAAAAACTCACAAAACAC
1 AAAA-TTACATTACTAAAAAATCACAAAACAC
81270540 AAAAATTTAT
Statistics
Matches: 184, Mismatches: 26, Indels: 39
0.74 0.10 0.16
Matches are distributed among these distances:
92 5 0.03
93 4 0.02
94 28 0.15
96 32 0.17
97 9 0.05
101 10 0.05
102 18 0.10
103 21 0.11
104 48 0.26
105 4 0.02
106 5 0.03
ACGTcount: A:0.54, C:0.16, G:0.01, T:0.28
Consensus pattern (102 bp):
AAAATTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTATATAACCTAATCA
TAAATACTAACAAAATAACTATAAAATTATTTTTTTT
Found at i:81270457 original size:28 final size:29
Alignment explanation
Indices: 81270426--81270483 Score: 66
Period size: 28 Copynumber: 2.0 Consensus size: 29
81270416 AAGAAATTAC
*
81270426 ATTACTAAACAATAACA-AAAC-ACTAACA
1 ATTAATAAACAA-AACATAAACTACTAACA
* *
81270454 ATTAATAACCAAATCATAAACTACTAACA
1 ATTAATAAACAAAACATAAACTACTAACA
81270483 A
1 A
81270484 AATAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 3 0.12
28 14 0.56
29 8 0.32
ACGTcount: A:0.59, C:0.21, G:0.00, T:0.21
Consensus pattern (29 bp):
ATTAATAAACAAAACATAAACTACTAACA
Found at i:81270537 original size:91 final size:95
Alignment explanation
Indices: 81270347--81270539 Score: 238
Period size: 91 Copynumber: 2.1 Consensus size: 95
81270337 ACCCTAAACT
* *
81270347 AAACACTAACAATTTATAACCTAATCCCATATAATACTAACAAAATAAATAACTAAAACATTTTT
1 AAACACTAACAATTAATAACCAAAT-CCATATAATACTAACAAAATAAATAACTAAAACATTTTT
81270412 TTAAAAGAAATTACATTACTAAACAATAACA
65 TTAAAAGAAATTACATTACTAAACAATAACA
* *
81270443 AAACACTAACAATTAATAACCAAAT-CATA-AACTACTAACAAAATAACT-A-TAAAA-TTATTT
1 AAACACTAACAATTAATAACCAAATCCATATAA-TACTAACAAAATAAATAACTAAAACAT-TTT
* * *
81270503 TTTGAAA-AATTTACATTACTAAA-AACTCACA
64 TTTAAAAGAAATTACATTACTAAACAA-TAACA
81270534 AAACAC
1 AAACAC
81270540 AAAAATTTAT
Statistics
Matches: 87, Mismatches: 7, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
90 2 0.02
91 26 0.30
92 14 0.16
93 3 0.03
94 19 0.22
96 23 0.26
ACGTcount: A:0.54, C:0.17, G:0.01, T:0.27
Consensus pattern (95 bp):
AAACACTAACAATTAATAACCAAATCCATATAATACTAACAAAATAAATAACTAAAACATTTTTT
TAAAAGAAATTACATTACTAAACAATAACA
Found at i:81270585 original size:38 final size:37
Alignment explanation
Indices: 81270538--81270728 Score: 118
Period size: 34 Copynumber: 5.3 Consensus size: 37
81270528 CTCACAAAAC
* *
81270538 ACAAAA-ATTTATAATAGATTACTAACAAAATATTTA
1 ACAAAATAATTATAATACATTACTAACAAAATATTTA
* ***
81270574 ACAAAATAATT-T--TACATTACTAA-AAACTCACAAA
1 ACAAAATAATTATAATACATTACTAACAAAAT-ATTTA
*
81270608 ACACAACA-AATTATAATA-ATTTACTGACAAAATATTTA
1 ACA-AA-ATAATTATAATACA-TTACTAACAAAATATTTA
* ***
81270646 ACAAAATAATT-T--TACATTACTAA-AAACTCACAAA
1 ACAAAATAATTATAATACATTACTAACAAAAT-ATTTA
* *
81270680 ACACAACA-AATTATAATAAATTACAAACAAAATATTTA
1 ACA-AA-ATAATTATAATACATTACTAACAAAATATTTA
81270718 ACAAAATAATT
1 ACAAAATAATT
81270729 TTTCATTAAT
Statistics
Matches: 114, Mismatches: 22, Indels: 37
0.66 0.13 0.21
Matches are distributed among these distances:
33 8 0.07
34 28 0.25
35 13 0.11
36 14 0.12
37 16 0.14
38 27 0.24
39 8 0.07
ACGTcount: A:0.57, C:0.14, G:0.01, T:0.29
Consensus pattern (37 bp):
ACAAAATAATTATAATACATTACTAACAAAATATTTA
Found at i:81270593 original size:72 final size:71
Alignment explanation
Indices: 81270512--81270749 Score: 388
Period size: 72 Copynumber: 3.3 Consensus size: 71
81270502 TTTTGAAAAA
81270512 TTTACATTACTAAAAACTCACAAAACACAA-AAATTTATAATAGATTACTAACAAAATATTTAAC
1 TTTACATTACTAAAAACTCACAAAACACAACAAA-TTATAATA-ATTACTAACAAAATATTTAAC
81270576 AAAATAAT
64 AAAATAAT
*
81270584 TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAATTTACTGACAAAATATTTAACA
1 TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAA-TTACTAACAAAATATTTAACA
81270649 AAATAAT
65 AAATAAT
*
81270656 TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAAATTACAAACAAAATATTTAACA
1 TTTACATTACTAAAAACTCACAAAACACAACAAATTATAAT-AATTACTAACAAAATATTTAACA
81270721 AAATAAT
65 AAATAAT
* * *
81270728 TTTTCATTAATAAAAAATCACA
1 TTTACATTACTAAAAACTCACA
81270750 GAATACTAAA
Statistics
Matches: 157, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
71 1 0.01
72 151 0.96
73 5 0.03
ACGTcount: A:0.55, C:0.15, G:0.01, T:0.29
Consensus pattern (71 bp):
TTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAATTACTAACAAAATATTTAACAA
AATAAT
Found at i:81270608 original size:41 final size:41
Alignment explanation
Indices: 81270562--81270680 Score: 114
Period size: 41 Copynumber: 3.1 Consensus size: 41
81270552 TAGATTACTA
81270562 ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
1 ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
* * * ** *
81270603 ACAAAACA--CAAC-AAATTATAATA-ATT--T----ACTG
1 ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
81270634 ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
1 ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
81270675 ACAAAA
1 ACAAAA
81270681 CACAACAAAT
Statistics
Matches: 56, Mismatches: 12, Indels: 20
0.64 0.14 0.23
Matches are distributed among these distances:
31 10 0.18
33 3 0.05
34 8 0.14
35 4 0.07
37 4 0.07
38 8 0.14
39 3 0.05
41 16 0.29
ACGTcount: A:0.55, C:0.15, G:0.01, T:0.29
Consensus pattern (41 bp):
ACAAAATATTTAACAAAATAATTTTACATTACTAAAAACTC
Found at i:81270617 original size:39 final size:39
Alignment explanation
Indices: 81270573--81270689 Score: 106
Period size: 31 Copynumber: 3.2 Consensus size: 39
81270563 CAAAATATTT
81270573 AACAAAATAATTTTACATTACTAAAAACTCACAAAACAC
1 AACAAAATAATTTTACATTACTAAAAACTCACAAAACAC
* ** * * *
81270612 AAC-AAATTATAATA-ATT--T----ACTGACAAAATATTT
1 AACAAAATAATTTTACATTACTAAAAACTCACAAAACA--C
81270645 AACAAAATAATTTTACATTACTAAAAACTCACAAAACAC
1 AACAAAATAATTTTACATTACTAAAAACTCACAAAACAC
81270684 AACAAA
1 AACAAA
81270690 TTATAATAAA
Statistics
Matches: 56, Mismatches: 12, Indels: 20
0.64 0.14 0.23
Matches are distributed among these distances:
31 10 0.18
33 3 0.05
34 8 0.14
35 4 0.07
37 4 0.07
38 8 0.14
39 9 0.16
41 10 0.18
ACGTcount: A:0.56, C:0.17, G:0.01, T:0.26
Consensus pattern (39 bp):
AACAAAATAATTTTACATTACTAAAAACTCACAAAACAC
Found at i:81270814 original size:144 final size:144
Alignment explanation
Indices: 81270513--81270791 Score: 359
Period size: 144 Copynumber: 1.9 Consensus size: 144
81270503 TTTGAAAAAT
* *
81270513 TTACATTACTAAAAACTCACAAAACACAAAAATTTATAATAGATTACTAACAAAATATTTAACAA
1 TTACATTACTAAAAACTCACAAAACACAAAAATTTATAATAAATTACAAACAAAATATTTAACAA
* * * * * * *
81270578 AATAATTTTACATTACTAAAAACTCACAAAACACAACAAATTATAATAATTTACTGACAAAATAT
66 AATAATTTTACATTAATAAAAAATCACAAAACACAACAAATCACAACAATTTACTAACAAAATAC
* *
81270643 TTAACAAAATAATT
131 TAAACAAAATAATA
81270657 TTACATTACTAAAAACTCACAAAACACAACAAA-TTATAATAAATTACAAACAAAATATTTAACA
1 TTACATTACTAAAAACTCACAAAACACAA-AAATTTATAATAAATTACAAACAAAATATTTAACA
* *
81270721 AAATAATTTTTCATTAATAAAAAATCACAGAATACTA-AACTAAA-CACAACAATTTA-TAACAT
65 AAATAATTTTACATTAATAAAAAATCACA-AA-AC-ACAAC-AAATCACAACAATTTACTAACAA
*
81270783 AATCCTAAA
126 AATACTAAA
81270792 TTACTAATAA
Statistics
Matches: 117, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
144 84 0.72
145 15 0.13
146 14 0.12
147 4 0.03
ACGTcount: A:0.56, C:0.15, G:0.01, T:0.28
Consensus pattern (144 bp):
TTACATTACTAAAAACTCACAAAACACAAAAATTTATAATAAATTACAAACAAAATATTTAACAA
AATAATTTTACATTAATAAAAAATCACAAAACACAACAAATCACAACAATTTACTAACAAAATAC
TAAACAAAATAATA
Found at i:81270837 original size:60 final size:60
Alignment explanation
Indices: 81270761--81270884 Score: 221
Period size: 60 Copynumber: 2.1 Consensus size: 60
81270751 AATACTAAAC
*
81270761 TAAACACAACAATTTATAACATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTA
1 TAAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
* *
81270821 TAAACACAACAGTTTATAACATAATCCTAAATTATTAACAAATTAATTTTAAAATAATTA
1 TAAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
81270881 TAAA
1 TAAA
81270885 AAAATAAAAA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.53, C:0.11, G:0.01, T:0.35
Consensus pattern (60 bp):
TAAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
Found at i:81271253 original size:19 final size:20
Alignment explanation
Indices: 81271222--81271260 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
81271212 TTGGGTATTT
*
81271222 TTAACTCGTATTTTGACCTG
1 TTAACTCGTATTTTAACCTG
81271242 TTAACT-GTATTTTAACCTG
1 TTAACTCGTATTTTAACCTG
81271261 GTGTATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.46
Consensus pattern (20 bp):
TTAACTCGTATTTTAACCTG
Found at i:81271315 original size:20 final size:21
Alignment explanation
Indices: 81271290--81271328 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
81271280 TTTAAAAAAA
*
81271290 TAAAAT-AATAATATTTTATT
1 TAAAATAAAAAATATTTTATT
81271310 TAAAATAAAAAATATTTTA
1 TAAAATAAAAAATATTTTA
81271329 ATATAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TAAAATAAAAAATATTTTATT
Found at i:81272507 original size:6 final size:6
Alignment explanation
Indices: 81272477--81272667 Score: 115
Period size: 6 Copynumber: 31.0 Consensus size: 6
81272467 AAGAAACATT
* * *
81272477 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATAAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
81272524 GTGACAGA ATCAAA ATCAAA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * *
81272575 ATCAGA ATCAGT ATTAGGTA A-CAGA ATCAGA ATCAAA ATTAGA ATCAGA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
81272624 ATTAGGTA A-CAGA ATCAAA ATCAGT ATCAGGTA A-CAGA ATCAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
81272668 GTGTGAATGC
Statistics
Matches: 142, Mismatches: 26, Indels: 34
0.70 0.13 0.17
Matches are distributed among these distances:
5 10 0.07
6 112 0.79
7 13 0.09
8 7 0.05
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:81272541 original size:31 final size:31
Alignment explanation
Indices: 81272498--81272667 Score: 139
Period size: 31 Copynumber: 5.3 Consensus size: 31
81272488 AATCAAAATG
*
81272498 AGAATCAGAATCAGAATAAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGT-----AA-C
* * *
81272535 AAAATCAAAATCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
81272566 AGAATCAGAATCAGAATCAGTATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* * *
81272597 AGAATCAGAATCAAAATTAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAA-C
* *
81272627 AGGTAA-CAGAATCAAAATCAGTATCAGGTAAC
1 A-G-AATCAGAATCAGAATCAGAATCAGGTAAC
81272659 AGAATCAGA
1 AGAATCAGA
81272668 GTGTGAATGC
Statistics
Matches: 112, Mismatches: 15, Indels: 18
0.77 0.10 0.12
Matches are distributed among these distances:
29 2 0.02
30 4 0.04
31 74 0.66
32 6 0.05
33 2 0.02
37 24 0.21
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:81272550 original size:37 final size:37
Alignment explanation
Indices: 81272500--81272646 Score: 180
Period size: 37 Copynumber: 4.1 Consensus size: 37
81272490 TCAAAATGAG
* * * *
81272500 AATCAGAATCAGAATAAGAATCAGGTGACAGAATCAA
1 AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAA
81272537 AATCAAAATCAGAATCAGAATTAGGTAACAG------
1 AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAA
* * *
81272568 AATCAGAATCAGAATCAGTATTAGGTAACAGAATCAG
1 AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAA
*
81272605 AATCAAAATTAGAATCAGAATTAGGTAACAGAATCAA
1 AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAA
81272642 AATCA
1 AATCA
81272647 GTATCAGGTA
Statistics
Matches: 94, Mismatches: 10, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
31 29 0.31
37 65 0.69
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (37 bp):
AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAA
Found at i:81272578 original size:43 final size:42
Alignment explanation
Indices: 81272477--81272557 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 42
81272467 AAGAAACATT
* *
81272477 ATCAGA-ACTAGAATCAAAATGAGAATCAGAATCAGAATAAGA
1 ATCAGATAC-AGAATCAAAATCAAAATCAGAATCAGAATAAGA
*
81272519 ATCAGGTGACAGAATCAAAATCAAAATCAGAATCAGAAT
1 ATCAGAT-ACAGAATCAAAATCAAAATCAGAATCAGAAT
81272558 TAGGTAACAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 5 0.15
43 27 0.79
44 2 0.06
ACGTcount: A:0.53, C:0.14, G:0.16, T:0.17
Consensus pattern (42 bp):
ATCAGATACAGAATCAAAATCAAAATCAGAATCAGAATAAGA
Done.