Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 235 of 290
Found at i:81272599 original size:68 final size:68
Alignment explanation
Indices: 81272498--81272653 Score: 240
Period size: 68 Copynumber: 2.3 Consensus size: 68
81272488 AATCAAAATG
* *
81272498 AGAATCAGAATCAGAATAAGAATCAGGTGACAGAATCAAAATCAAAATCAGAATCAGAATTAGGT
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATCAAAATCAAAATCAGAATCAGAATTAGGT
81272563 AAC
66 AAC
* * * *
81272566 AGAATCAGAATCAGAATCAGTATTAGGTAACAGAATCAGAATCAAAATTAGAATCAGAATTAGGT
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATCAAAATCAAAATCAGAATCAGAATTAGGT
81272631 AAC
66 AAC
* *
81272634 AGAATCAAAATCAGTATCAG
1 AGAATCAGAATCAGAATCAG
81272654 GTAACAGAAT
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 80 1.00
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (68 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATCAAAATCAAAATCAGAATCAGAATTAGGT
AAC
Found at i:81272647 original size:25 final size:25
Alignment explanation
Indices: 81272617--81272665 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
81272607 TCAAAATTAG
*
81272617 AATCAGAATTAGGTAACAGAATCAA
1 AATCAGAATCAGGTAACAGAATCAA
*
81272642 AATCAGTATCAGGTAACAGAATCA
1 AATCAGAATCAGGTAACAGAATCA
81272666 GAGTGTGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.20
Consensus pattern (25 bp):
AATCAGAATCAGGTAACAGAATCAA
Found at i:81272866 original size:31 final size:30
Alignment explanation
Indices: 81272812--81272870 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
81272802 AAATCACCAG
* *
81272812 ATATAGATATTGTGGCTAGGCCACCAGAAC
1 ATATAGATATTGTGGCGAAGCCACCAGAAC
*
81272842 ATATATATATATGTGGCGAAGCCACCAGA
1 ATATAGATAT-TGTGGCGAAGCCACCAGA
81272871 TTACAACGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 9 0.36
31 16 0.64
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.24
Consensus pattern (30 bp):
ATATAGATATTGTGGCGAAGCCACCAGAAC
Found at i:81273212 original size:27 final size:27
Alignment explanation
Indices: 81273182--81273478 Score: 405
Period size: 27 Copynumber: 11.0 Consensus size: 27
81273172 GGGGTAAAAT
* * *
81273182 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81273209 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
81273236 AGTAATTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81273263 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
81273290 GGTAATTCTACCCCACAGGGGTATTTA
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81273317 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81273344 GGTAGTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81273371 GGTAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81273398 GGTAGTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81273425 GGTAATTTTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81273452 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
81273479 AATATTTTAC
Statistics
Matches: 236, Mismatches: 34, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 236 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:81273699 original size:54 final size:54
Alignment explanation
Indices: 81273640--81273897 Score: 356
Period size: 54 Copynumber: 4.8 Consensus size: 54
81273630 GGGGTGTTTT
* * * * * *
81273640 GGTAATTTTGTAAACCAAGAGTAAAACGATATTTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAATGGTATTTCTATAAATCGAGGGTAAAAC
* *
81273694 AGTAATTTTATAAATCGAGGGTAAAATGGTATTTCTATAAATCGAGGGTAAAAT
1 GGTAATTTTATAAATCGAGGGTAAAATGGTATTTCTATAAATCGAGGGTAAAAC
* *
81273748 GGTAATTTTATAAATCGAGGGTAAAAAGGTAGTTT-TGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAATGGTA-TTTCTATAAATCGAGGGTAAAAC
* * *
81273802 GATAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAATCGAGGGTAAAATGGTATTTCTATAAATCGAGGGTAAAAC
* * *
81273856 GGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAAT
1 GGTAATTTTATAAATCGAGGGTAAAATGGTATTTCTATAAAT
81273898 TGGGGGTACT
Statistics
Matches: 183, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
53 2 0.01
54 178 0.97
55 3 0.02
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (54 bp):
GGTAATTTTATAAATCGAGGGTAAAATGGTATTTCTATAAATCGAGGGTAAAAC
Found at i:81273905 original size:27 final size:27
Alignment explanation
Indices: 81273672--81273897 Score: 335
Period size: 27 Copynumber: 8.4 Consensus size: 27
81273662 AAAACGATAT
**
81273672 TTCTATAAATCGAGGGTAAAACAGTAA
1 TTCTATAAATCGAGGGTAAAATGGTAA
* *
81273699 TTTTATAAATCGAGGGTAAAATGGTAT
1 TTCTATAAATCGAGGGTAAAATGGTAA
81273726 TTCTATAAATCGAGGGTAAAATGGTAA
1 TTCTATAAATCGAGGGTAAAATGGTAA
* * *
81273753 TTTTATAAATCGAGGGTAAAAAGGTAG
1 TTCTATAAATCGAGGGTAAAATGGTAA
* * * *
81273780 TTTTGTAAATCGAGGGTAAAACGATAA
1 TTCTATAAATCGAGGGTAAAATGGTAA
81273807 TTCTATAAATCGAGGGTAAAATGGTAA
1 TTCTATAAATCGAGGGTAAAATGGTAA
*
81273834 TTCTATAAATCGAGGGTAAAACGGTAA
1 TTCTATAAATCGAGGGTAAAATGGTAA
*
81273861 TTCTATAAATTGAGGGTAAAATGGTAA
1 TTCTATAAATCGAGGGTAAAATGGTAA
81273888 TTCTATAAAT
1 TTCTATAAAT
81273898 TGGGGGTACT
Statistics
Matches: 179, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 179 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (27 bp):
TTCTATAAATCGAGGGTAAAATGGTAA
Found at i:81273931 original size:26 final size:26
Alignment explanation
Indices: 81273902--81274001 Score: 80
Period size: 26 Copynumber: 3.8 Consensus size: 26
81273892 ATAAATTGGG
*
81273902 GGTACTTTGATAATTTTACAATTTGA
1 GGTACTTTGATAATTTTACAATTCGA
*
81273928 GGTAC-TTCATTAATTTTACAA-TCGA
1 GGTACTTTGA-TAATTTTACAATTCGA
* * * *
81273953 CGGTA-TTTCGGTAATTTTATAAATCGGG
1 -GGTACTTT-GATAATTTTACAATTC-GA
*
81273981 GGTACTTTGGTAATTTTACAA
1 GGTACTTTGATAATTTTACAA
81274002 AGGAATTTCA
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
25 6 0.10
26 32 0.53
27 18 0.30
28 4 0.07
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.42
Consensus pattern (26 bp):
GGTACTTTGATAATTTTACAATTCGA
Found at i:81273982 original size:79 final size:76
Alignment explanation
Indices: 81273883--81274052 Score: 225
Period size: 79 Copynumber: 2.2 Consensus size: 76
81273873 AGGGTAAAAT
* * * *
81273883 GGTAATTCTATAAATTGGGGGTACTTTGATAATTTTACAATTTGAGGTACTTCATTAATTTTAC-
1 GGTAATTTTATAAATCGGGGGTACTTTGATAATTTTACAA----AGGAACTTCAGTAATTTTACA
81273947 AATCGACGGTATTTC
62 AATCGACGGTATTTC
* *
81273962 GGTAATTTTATAAATCGGGGGTACTTTGGTAATTTTACAAAGGAATTTCAGTAATTTTACAAATC
1 GGTAATTTTATAAATCGGGGGTACTTTGATAATTTTACAAAGGAACTTCAGTAATTTTACAAATC
*
81274027 GAGGGTATTTC
66 GACGGTATTTC
81274038 GGTAATTTTAGTAAA
1 GGTAATTTTA-TAAA
81274053 CTAAAGTATT
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
75 17 0.21
76 24 0.29
77 4 0.05
79 37 0.45
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (76 bp):
GGTAATTTTATAAATCGGGGGTACTTTGATAATTTTACAAAGGAACTTCAGTAATTTTACAAATC
GACGGTATTTC
Found at i:81273984 original size:27 final size:27
Alignment explanation
Indices: 81273490--81274052 Score: 226
Period size: 27 Copynumber: 21.1 Consensus size: 27
81273480 ATATTTTACG
* * * *
81273490 AATCGAGGGTTTTTCGATAATTTCACA
1 AATCGAGGGTATTTCGGTAATTTTATA
* * *
81273517 AATC-AGGGGTATTTTGGTAAATTTACA
1 AATCGA-GGGTATTTCGGTAATTTTATA
* *
81273544 AA-CCAGGGGTATTTTGGTAATTTTATA
1 AATCGA-GGGTATTTCGGTAATTTTATA
* ** *
81273571 AATCAAGGGTATTTTAGTAATTTTACA
1 AATCGAGGGTATTTCGGTAATTTTATA
* * * *
81273598 AACCAAGGGTATTTCAGTAATTTTACA
1 AATCGAGGGTATTTCGGTAATTTTATA
* * * *
81273625 AA-CCAGGGGTGTTTTGGTAATTTTGTA
1 AATCGA-GGGTATTTCGGTAATTTTATA
* * * *** *
81273652 AACCAAGAGTAAAACGAT-ATTTCTATA
1 AATCGAGGGTATTTCGGTAATTT-TATA
*** *
81273679 AATCGAGGGTAAAACAGTAATTTTATA
1 AATCGAGGGTATTTCGGTAATTTTATA
**
81273706 AATCGAGGGTAAAAT-GGT-ATTTCTATA
1 AATCGAGGGT-ATTTCGGTAATTT-TATA
**
81273733 AATCGAGGGTAAAAT-GGTAATTTTATA
1 AATCGAGGGT-ATTTCGGTAATTTTATA
**** * *
81273760 AATCGAGGGTAAAAAGGTAGTTTTGTA
1 AATCGAGGGTATTTCGGTAATTTTATA
*** * *
81273787 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTATTTCGGTAATTTTATA
** *
81273814 AATCGAGGGTAAAAT-GGTAATTCTATA
1 AATCGAGGGT-ATTTCGGTAATTTTATA
*** *
81273841 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTATTTCGGTAATTTTATA
* ** *
81273868 AATTGAGGGTAAAAT-GGTAATTCTATA
1 AATCGAGGGT-ATTTCGGTAATTTTATA
* * * *
81273895 AATTGGGGGTACTTT-GATAATTTTACA
1 AATCGAGGGTA-TTTCGGTAATTTTATA
* * * ** *
81273922 ATTTGA-GGTACTTCATTAATTTTA-C
1 AATCGAGGGTATTTCGGTAATTTTATA
*
81273947 AATCGACGGTATTTCGGTAATTTTATA
1 AATCGAGGGTATTTCGGTAATTTTATA
* *
81273974 AATCGGGGGTACTTT-GGTAATTTTA-C
1 AATCGAGGGTA-TTTCGGTAATTTTATA
* * *
81274000 AA---A-GGAATTTCAGTAATTTTACA
1 AATCGAGGGTATTTCGGTAATTTTATA
81274023 AATCGAGGGTATTTCGGTAATTTTAGTA
1 AATCGAGGGTATTTCGGTAATTTTA-TA
81274051 AA
1 AA
81274053 CTAAAGTATT
Statistics
Matches: 435, Mismatches: 75, Indels: 51
0.78 0.13 0.09
Matches are distributed among these distances:
21 3 0.01
22 12 0.03
23 2 0.00
25 6 0.01
26 49 0.11
27 336 0.77
28 27 0.06
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (27 bp):
AATCGAGGGTATTTCGGTAATTTTATA
Found at i:81274238 original size:17 final size:18
Alignment explanation
Indices: 81274218--81274252 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
81274208 AACTTACCCA
81274218 ATTGGGCCCATA-GGCCC
1 ATTGGGCCCATATGGCCC
81274235 ATTGGGCCCATATGGCCC
1 ATTGGGCCCATATGGCCC
81274253 CTTTCGGCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.17, C:0.34, G:0.29, T:0.20
Consensus pattern (18 bp):
ATTGGGCCCATATGGCCC
Found at i:81274263 original size:19 final size:17
Alignment explanation
Indices: 81274222--81274264 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
81274212 TACCCAATTG
*
81274222 GGCCCATAGGCCCATTG
1 GGCCCATAGGCCCATTC
*
81274239 GGCCCATATGGCCCCTTTC
1 GGCCCATA-GG-CCCATTC
81274258 GGCCCAT
1 GGCCCAT
81274265 CGCGGCTCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 8 0.36
18 2 0.09
19 12 0.55
ACGTcount: A:0.14, C:0.40, G:0.26, T:0.21
Consensus pattern (17 bp):
GGCCCATAGGCCCATTC
Found at i:81280787 original size:17 final size:16
Alignment explanation
Indices: 81280761--81280792 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
81280751 TGTAAAAGTT
81280761 AGGTTCTAATAGCTAA
1 AGGTTCTAATAGCTAA
81280777 AGGTGTCTAATAGCTA
1 AGGT-TCTAATAGCTA
81280793 TAAAACTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (16 bp):
AGGTTCTAATAGCTAA
Found at i:81282029 original size:10 final size:10
Alignment explanation
Indices: 81282004--81282062 Score: 64
Period size: 10 Copynumber: 5.8 Consensus size: 10
81281994 TCAGCTAAAG
*
81282004 TCAGCTCACT
1 TCAGCTCATT
* *
81282014 TGAGCTTATT
1 TCAGCTCATT
*
81282024 TCAGCTCGTT
1 TCAGCTCATT
*
81282034 TGAGCTCATT
1 TCAGCTCATT
81282044 TCAGCTTCATT
1 TCAGC-TCATT
81282055 TCAGCTCA
1 TCAGCTCA
81282063 ATTACTTAAT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
10 29 0.74
11 10 0.26
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.39
Consensus pattern (10 bp):
TCAGCTCATT
Found at i:81282249 original size:20 final size:21
Alignment explanation
Indices: 81282208--81282245 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
81282198 ATTAACTAAG
81282208 TTTATATTAAATGTGTTATAA
1 TTTATATTAAATGTGTTATAA
*
81282229 TTTA-ATTATATGT-TTAT
1 TTTATATTAAATGTGTTAT
81282246 TAATGTGCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 8 0.50
21 4 0.25
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (21 bp):
TTTATATTAAATGTGTTATAA
Found at i:81285978 original size:40 final size:40
Alignment explanation
Indices: 81285880--81286142 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
81285870 TCCTCGTTCA
* * * ** *
81285880 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
81285919 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81285959 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81285999 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
81286039 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
81286079 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
81286119 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81286143 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:81295242 original size:40 final size:40
Alignment explanation
Indices: 81295198--81295465 Score: 473
Period size: 40 Copynumber: 6.7 Consensus size: 40
81295188 GCAAACACAT
* *
81295198 TTGCCTTCGGGTCTTAGCCCGAACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
81295238 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
81295278 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
81295318 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
81295358 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
81295398 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
81295438 TTGCCTTCGGGTCATAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
81295466 TCCAATGCTC
Statistics
Matches: 221, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 221 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:81305544 original size:40 final size:40
Alignment explanation
Indices: 81305439--81305655 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
81305429 CGGATGATAA
* *
81305439 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
81305479 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
81305518 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
81305558 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
81305598 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
81305638 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
81305656 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 51 0.31
40 115 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:81305653 original size:119 final size:119
Alignment explanation
Indices: 81305435--81305655 Score: 331
Period size: 119 Copynumber: 1.9 Consensus size: 119
81305425 TATTCGGATG
* *
81305435 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* * *
81305500 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
*
81305554 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
*
81305618 ATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
64 ATTTGAGCAAGTTA-CTATATCCGGGCTAAATCCCGAAGG
81305656 TACTTGGTTT
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
118 2 0.02
119 64 0.70
120 26 0.28
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACT
Found at i:81313961 original size:67 final size:65
Alignment explanation
Indices: 81313858--81314035 Score: 184
Period size: 64 Copynumber: 2.8 Consensus size: 65
81313848 CACCCATGTG
* * * * * *
81313858 ACCTAGCCAC-TTTATCTCGTAGCTCTGTTGTTTACATGGTGTCCTTCACTTGGAACCACACAT-
1 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGT--TACACATAGAACCACACATG
81313921 ACA
64 A-A
* * * *
81313924 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTG-TACACATAGTATCACCCATGAT
1 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTTACACATAGAACCACACATGAA
* * *
81313988 ACCTAGCTACATATATCCCATAGCTCTCTTGTCTACATGGTG-TACACA
1 ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTTACACA
81314036 CACAAACTTA
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
64 58 0.60
65 1 0.01
66 9 0.09
67 29 0.30
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (65 bp):
ACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTTACACATAGAACCACACATGAA
Found at i:81320773 original size:15 final size:16
Alignment explanation
Indices: 81320747--81320776 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
81320737 GTTCCGGTTT
81320747 GATTCTATTGAAAATA
1 GATTCTATTGAAAATA
81320763 GATTC-ATTGAAAAT
1 GATTCTATTGAAAAT
81320777 TTAAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (16 bp):
GATTCTATTGAAAATA
Found at i:81321686 original size:48 final size:48
Alignment explanation
Indices: 81321611--81321876 Score: 383
Period size: 48 Copynumber: 5.5 Consensus size: 48
81321601 GCCTCATGCT
* * *
81321611 GATGCCATGTTCCAGACATGGTATTACACTGGCTCACATAACGATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTC
* * *
81321659 GATGCCATGTCCCAGGCAAGGTCTTACACTAGCTCACATAA-AGATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA-ATGTC
*
81321707 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAACAATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTC
* *
81321755 AATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATAACAATG-C
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTC
* * * *
81321802 TGATGCCATGTCCCAGACATAGTTTTACACTGGCTCACAAAACAATGCC
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTC
81321851 GATGCCATGTCCCAGACATGGTCTTA
1 GATGCCATGTCCCAGACATGGTCTTA
81321877 TATGGTTACA
Statistics
Matches: 194, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
47 1 0.01
48 191 0.98
49 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTC
Found at i:81324713 original size:19 final size:19
Alignment explanation
Indices: 81324689--81324731 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
81324679 GAAGACAATG
81324689 TTTGTATCGAAATGTTTAA
1 TTTGTATCGAAATGTTTAA
81324708 TTTGTATCGAAATGTTTAA
1 TTTGTATCGAAATGTTTAA
81324727 TTTGT
1 TTTGT
81324732 CAGCAGGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.28, C:0.05, G:0.16, T:0.51
Consensus pattern (19 bp):
TTTGTATCGAAATGTTTAA
Found at i:81335734 original size:41 final size:41
Alignment explanation
Indices: 81335677--81335759 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
81335667 CAATCCAGAC
81335677 TAACCTAGTGCTTGACCAACCAGTCCATTCCGAAAATTATA
1 TAACCTAGTGCTTGACCAACCAGTCCATTCCGAAAATTATA
81335718 TAACCTAGTGCTTGACCAACCAGTCCATTCCGAAAATTATA
1 TAACCTAGTGCTTGACCAACCAGTCCATTCCGAAAATTATA
81335759 T
1 T
81335760 CAAACTCTCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.28
Consensus pattern (41 bp):
TAACCTAGTGCTTGACCAACCAGTCCATTCCGAAAATTATA
Found at i:81339784 original size:50 final size:50
Alignment explanation
Indices: 81339746--81339891 Score: 213
Period size: 50 Copynumber: 2.9 Consensus size: 50
81339736 ATTATTGGAT
* *
81339746 CTTGTATTTTCAGCCATGTAGGTAAGTATTTATGTGATGATATATTGAAC
1 CTTGTATTTTCAGACATATAGGTAAGTATTTATGTGATGATATATTGAAC
* * *
81339796 CTTGTATATTCAGTCATATAGGTAAGTATTTATGTGATGATATATTAAAC
1 CTTGTATTTTCAGACATATAGGTAAGTATTTATGTGATGATATATTGAAC
* *
81339846 CTTGTATATTT-GGACATATGGGTAAGTATTTATGTGATGATATATT
1 CTTGTAT-TTTCAGACATATAGGTAAGTATTTATGTGATGATATATT
81339892 TGATCTTGCA
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
50 85 0.98
51 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (50 bp):
CTTGTATTTTCAGACATATAGGTAAGTATTTATGTGATGATATATTGAAC
Found at i:81347543 original size:50 final size:50
Alignment explanation
Indices: 81347437--81347649 Score: 195
Period size: 50 Copynumber: 4.3 Consensus size: 50
81347427 GTATGTACAA
* * * * ** * **
81347437 ATGTGATGTTATATTGAA-CTTGAATGTTTGGCCACATAGGTACGTACAT
1 ATGTGATGATATATTGAACCTTGTATATTTGGCTATGTAGGTAAGTATTT
* * * * *
81347486 ATATGATG-TATTATTGGATCTTATATTTTTGGCTATGTAGGTAAGTATTT
1 ATGTGATGATA-TATTGAACCTTGTATATTTGGCTATGTAGGTAAGTATTT
* * *
81347536 ATGTGATGATATATTGAACCTTGTATATTTAG-TCATATAAGTAAGTATTT
1 ATGTGATGATATATTGAACCTTGTATATTTGGCT-ATGTAGGTAAGTATTT
81347586 ATGTGATGATATATTGAACCTTGTATATTTGGACATATG--GGTAAG-ATTT
1 ATGTGATGATATATTGAACCTTGTATATTTGG-C-TATGTAGGTAAGTATTT
81347635 ATGTGATGATATATT
1 ATGTGATGATATATT
81347650 TGATCTTCCA
Statistics
Matches: 135, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
48 2 0.01
49 33 0.24
50 95 0.70
51 2 0.01
52 2 0.01
53 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (50 bp):
ATGTGATGATATATTGAACCTTGTATATTTGGCTATGTAGGTAAGTATTT
Found at i:81347663 original size:49 final size:50
Alignment explanation
Indices: 81347523--81347649 Score: 211
Period size: 50 Copynumber: 2.6 Consensus size: 50
81347513 TTTGGCTATG
*
81347523 TAGGTAAGTATTTATGTGATGATATATTGAACCTTGTATATTTAGTCATA
1 TAGGTAAGTATTTATGTGATGATATATTGAACCTTGTATATTTAGACATA
* *
81347573 TAAGTAAGTATTTATGTGATGATATATTGAACCTTGTATATTTGGACATA
1 TAGGTAAGTATTTATGTGATGATATATTGAACCTTGTATATTTAGACATA
*
81347623 TGGGTAAG-ATTTATGTGATGATATATT
1 TAGGTAAGTATTTATGTGATGATATATT
81347650 TGATCTTCCA
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
49 19 0.26
50 53 0.74
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (50 bp):
TAGGTAAGTATTTATGTGATGATATATTGAACCTTGTATATTTAGACATA
Found at i:81352305 original size:19 final size:20
Alignment explanation
Indices: 81352277--81352321 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
81352267 TAAGAAATTT
*
81352277 ATTTAATTT-GAAAAT-TAA
1 ATTTATTTTGGAAAATGTAA
81352295 AGTTTATTTTGGAAAATGTAA
1 A-TTTATTTTGGAAAATGTAA
81352316 ATTTAT
1 ATTTAT
81352322 ATCTTCGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 1 0.04
19 7 0.30
20 11 0.48
21 4 0.17
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (20 bp):
ATTTATTTTGGAAAATGTAA
Found at i:81353361 original size:16 final size:16
Alignment explanation
Indices: 81353340--81353370 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81353330 AATTAATTTA
*
81353340 AATTAATTAATTTTCC
1 AATTAAATAATTTTCC
81353356 AATTAAATAATTTTC
1 AATTAAATAATTTTC
81353371 TCAACCCAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAAATAATTTTCC
Found at i:81366032 original size:27 final size:26
Alignment explanation
Indices: 81366002--81366065 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
81365992 CCCCCAATTG
*
81366002 TAAAATTACCAAAGTATCCCCGGTTTA
1 TAAAATTACCAAA-TATCCCCGATTTA
*
81366029 TAAAATTACCCAAATATCCTCGATTTA
1 TAAAATTA-CCAAATATCCCCGATTTA
*
81366056 CAAAATTACC
1 TAAAATTACC
81366066 GTTTTACCCT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 2 0.06
27 26 0.79
28 5 0.15
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.30
Consensus pattern (26 bp):
TAAAATTACCAAATATCCCCGATTTA
Found at i:81366131 original size:81 final size:81
Alignment explanation
Indices: 81366046--81366371 Score: 424
Period size: 81 Copynumber: 4.0 Consensus size: 81
81366036 ACCCAAATAT
81366046 CCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTAC
1 CCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTAC
*
81366111 AAAATTACTGTTTTAC
66 AAAATTACTATTTTAC
* * * * * * *
81366127 CCTCGATTGACAGAATTTCTGTTTTACCCTCGATTGATAGAATT-CTGTTTTACCCTCGATTTAC
1 CCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTAC
81366191 AAAATTACTATTTTAC
66 AAAATTACTATTTTAC
* * * * *
81366207 CCTTGATTT-CTAGAATTACCGTTTTACCCTCGATTGT-TAGAATTACAATTTTACCCTCGATTG
1 CCTCGATTTAC-AAAATTACCGTTTTACCCTCGATT-TACAGAATTACTATTTTACCCTCGATTT
81366270 ACAAAATTACTATTTTAC
64 ACAAAATTACTATTTTAC
* * ** * * *
81366288 CATTGATTTACAAAATTATTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTAT
1 CCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTAC
*
81366353 AAAATTACCATTTTAC
66 AAAATTACTATTTTAC
81366369 CCT
1 CCT
81366372 TAGGGTGTTA
Statistics
Matches: 213, Mismatches: 27, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
79 1 0.00
80 71 0.33
81 140 0.66
82 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (81 bp):
CCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTAC
AAAATTACTATTTTAC
Found at i:81366372 original size:27 final size:27
Alignment explanation
Indices: 81366046--81366371 Score: 352
Period size: 27 Copynumber: 12.1 Consensus size: 27
81366036 ACCCAAATAT
**
81366046 CCTCGATTTACAAAATTACCGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
*
81366073 CCTCGATTTACAGAATTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
*
81366100 CCTCGATTTACAAAATTACTGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * * *
81366127 CCTCGATTGACAGAATTTCTGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * * *
81366154 CCTCGATTGATAGAATT-CTGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
81366180 CCTCGATTTACAAAATTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * **
81366207 CCTTGATTT-CTAGAATTACCGTTTTAC
1 CCTCGATTTAC-AAAATTACTATTTTAC
* * *
81366234 CCTCGATTGT-TAGAATTACAATTTTAC
1 CCTCGATT-TACAAAATTACTATTTTAC
*
81366261 CCTCGATTGACAAAATTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * * *
81366288 CATTGATTTACAAAATTATTGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* *
81366315 CCTCGATTTACAGAATTACCATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * *
81366342 CCTTGATTTATAAAATTACCATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
81366369 CCT
1 CCT
81366372 TAGGGTGTTA
Statistics
Matches: 256, Mismatches: 39, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 24 0.09
27 231 0.90
28 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
CCTCGATTTACAAAATTACTATTTTAC
Found at i:81366915 original size:6 final size:6
Alignment explanation
Indices: 81366843--81366968 Score: 71
Period size: 6 Copynumber: 20.3 Consensus size: 6
81366833 CGGGGGTCAC
* * * * *
81366843 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTTTG ATTTTG AGTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
81366893 -TTACCTG ATACTG ATTCTA ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
81366943 ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
81366969 AATGTTTCTT
Statistics
Matches: 92, Mismatches: 16, Indels: 24
0.70 0.12 0.18
Matches are distributed among these distances:
5 5 0.05
6 70 0.76
7 14 0.15
8 3 0.03
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:81366958 original size:37 final size:37
Alignment explanation
Indices: 81366866--81366959 Score: 116
Period size: 37 Copynumber: 2.5 Consensus size: 37
81366856 ATTCTGTTAC
* * * * *
81366866 CTGATACTGATTTTGATTTTGAGTCTGTTACCTGATA
1 CTGATTCTGATTCTGATTCTGAGTCTGTCACCTAATA
* * *
81366903 CTGATTCTAATTCTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTGAGTCTGTCACCTAATA
81366940 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
81366960 AGTTCTGATA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGAGTCTGTCACCTAATA
Found at i:81367761 original size:91 final size:91
Alignment explanation
Indices: 81367604--81367784 Score: 308
Period size: 91 Copynumber: 2.0 Consensus size: 91
81367594 AAGTTGCAAT
* * *
81367604 AACTCGGCTGTGGATTGGGTTCTCAAATGTTGAATTTCAAAAAATTATTTTGAAGCACGTGCTCT
1 AACTCGGCTGTGGATTGGGTTCTCAAAGGTTGAATTTCAAAAAATTATTTTCAACCACGTGCTCT
*
81367669 GTTTGAAGTATTTCTCTTAAAAAGTG
66 GTTTGAAGTATTTCTCCTAAAAAGTG
* *
81367695 AACTCGGCTGTGGATTGGGTTTTCAAAGGTTGAATTTCAAAAAATTATTTTCAACCACGTGGTCT
1 AACTCGGCTGTGGATTGGGTTCTCAAAGGTTGAATTTCAAAAAATTATTTTCAACCACGTGCTCT
81367760 GTTTGAAGTATTTCTCCTAAAAAGT
66 GTTTGAAGTATTTCTCCTAAAAAGT
81367785 ATGGTACACC
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
91 84 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (91 bp):
AACTCGGCTGTGGATTGGGTTCTCAAAGGTTGAATTTCAAAAAATTATTTTCAACCACGTGCTCT
GTTTGAAGTATTTCTCCTAAAAAGTG
Found at i:81369132 original size:26 final size:27
Alignment explanation
Indices: 81369103--81369168 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 27
81369093 TTAGTTTACC
* *
81369103 AAATTACTAAAATATCCCCAG-TTGTA
1 AAATTACCAAAATATCCCCAGTTTATA
* *
81369129 AAATTACCAAAGTATCCCCGGTTTATA
1 AAATTACCAAAATATCCCCAGTTTATA
*
81369156 AAATTACCCAAAT
1 AAATTACCAAAAT
81369169 TCCTCGATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 18 0.55
27 15 0.45
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATATCCCCAGTTTATA
Found at i:81369186 original size:26 final size:28
Alignment explanation
Indices: 81369128--81369188 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 28
81369118 CCCCAGTTGT
* *
81369128 AAAATTA-CCAAAGTATCCCCGGTTTAT
1 AAAATTACCCAAAGTATCCCCGATTTAC
*
81369155 AAAATTACCCAAA-T-TCCTCGATTTAC
1 AAAATTACCCAAAGTATCCCCGATTTAC
81369181 AAAATTAC
1 AAAATTAC
81369189 TGTTTTACCC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 17 0.57
27 8 0.27
28 5 0.17
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.30
Consensus pattern (28 bp):
AAAATTACCCAAAGTATCCCCGATTTAC
Found at i:81369205 original size:27 final size:27
Alignment explanation
Indices: 81369170--81369522 Score: 422
Period size: 27 Copynumber: 13.1 Consensus size: 27
81369160 TACCCAAATT
*
81369170 CCTCGATTTACAAAATTACTGTTTTAC
1 CCTCGATTTACAGAATTACTGTTTTAC
81369197 CCTCGATTTACAGAATTACTGTTTTAC
1 CCTCGATTTACAGAATTACTGTTTTAC
* *
81369224 CCTCAATTTACAGAATTACTATTTTAC
1 CCTCGATTTACAGAATTACTGTTTTAC
*
81369251 CCTCGATTTACAGAATTACTATTTTAC
1 CCTCGATTTACAGAATTACTGTTTTAC
* * *
81369278 CCTCGATTGACAGGATTACCGTTTTAC
1 CCTCGATTTACAGAATTACTGTTTTAC
* * *
81369305 CCTCGGTTGATAGAATT-CTGTTTTAC
1 CCTCGATTTACAGAATTACTGTTTTAC
* *
81369331 CCTCGATTTACAAAATTACTATTTTAC
1 CCTCGATTTACAGAATTACTGTTTTAC
* *
81369358 CCTCGATTTCCAGAATTACCGTTTTAC
1 CCTCGATTTACAGAATTACTGTTTTAC
* *
81369385 CCTCGATTGT-CAAAATTACAGTTTTAC
1 CCTCGATT-TACAGAATTACTGTTTTAC
* *
81369412 CCTCGATTGACAGAATTACTATTTTAC
1 CCTCGATTTACAGAATTACTGTTTTAC
* *
81369439 CCTTGATTTACAAAATTACTGTTTTAC
1 CCTCGATTTACAGAATTACTGTTTTAC
* * **
81369466 CCTTGATTTATAGAATTACCATTTTAC
1 CCTCGATTTACAGAATTACTGTTTTAC
* * * **
81369493 CCTTGATTTATAAAATTACCATTTTAC
1 CCTCGATTTACAGAATTACTGTTTTAC
81369520 CCT
1 CCT
81369523 TAGGGTGTTA
Statistics
Matches: 287, Mismatches: 36, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
26 21 0.07
27 265 0.92
28 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
CCTCGATTTACAGAATTACTGTTTTAC
Found at i:81369881 original size:26 final size:27
Alignment explanation
Indices: 81369852--81369911 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
81369842 ATATATATAT
*
81369852 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
81369878 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
81369905 ATATCTG
1 ATATCTG
81369912 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:81370070 original size:6 final size:6
Alignment explanation
Indices: 81370059--81370127 Score: 61
Period size: 6 Copynumber: 11.3 Consensus size: 6
81370049 TTCGTGAAAT
*
81370059 TGATTC TGATTC TGATTC TG-TCACC TGATTC TGATTC TGATTC T-AGTTC
1 TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC TGA-TTC
** *
81370108 TGATAA TGTTTC TGATTC TG
1 TGATTC TGATTC TGATTC TG
81370128 TAATGGGTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
5 2 0.04
6 43 0.86
7 4 0.08
8 1 0.02
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.48
Consensus pattern (6 bp):
TGATTC
Found at i:81374615 original size:6 final size:6
Alignment explanation
Indices: 81374604--81374672 Score: 61
Period size: 6 Copynumber: 11.3 Consensus size: 6
81374594 TTCGTGAAAT
*
81374604 TGATTC TGATTC TGATTC TG-TCACC TGATTC TGATTC TGATTC T-AGTTC
1 TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC TGA-TTC
** *
81374653 TGATAA TGTTTC TGATTC TG
1 TGATTC TGATTC TGATTC TG
81374673 TAATGGGTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
5 2 0.04
6 43 0.86
7 4 0.08
8 1 0.02
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.48
Consensus pattern (6 bp):
TGATTC
Found at i:81376561 original size:42 final size:42
Alignment explanation
Indices: 81376503--81376609 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 42
81376493 TCGATGCCTC
* * * *
81376503 TGTCCCGGACAGGGTCTTATAC-AAA-ATCAGATACGATGCTGA
1 TGTCCCAGACACGGTCTTATACAAAATATCA-AT-CGAGGCCGA
*
81376545 TGTCCCAGACATGGTCTTATACATAAATATCAATCGAGGCCGA
1 TGTCCCAGACACGGTCTTATACA-AAATATCAATCGAGGCCGA
*
81376588 TGTCCCAAACACGGTCTTATAC
1 TGTCCCAGACACGGTCTTATAC
81376610 GGTATCTCAG
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 20 0.36
43 27 0.48
44 5 0.09
45 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTATACAAAATATCAATCGAGGCCGA
Found at i:81382983 original size:20 final size:20
Alignment explanation
Indices: 81382945--81382983 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
81382935 TGGGCTTTGA
*
81382945 AGAAACGAAGCAATGATCAC
1 AGAAACGAAGAAATGATCAC
* *
81382965 AGAAACGCAGAAATTATCA
1 AGAAACGAAGAAATGATCA
81382984 AAAACGGAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.51, C:0.18, G:0.18, T:0.13
Consensus pattern (20 bp):
AGAAACGAAGAAATGATCAC
Found at i:81388004 original size:35 final size:35
Alignment explanation
Indices: 81387959--81388033 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 35
81387949 GACAGTAAGC
* *
81387959 ACACAGAGTAAGCTACGATGAGCTTAGTAAGCCAA
1 ACACAAAGTAAGCTACGAAGAGCTTAGTAAGCCAA
81387994 ACACAAAGTAAGCTACGAAGAGCTTAGTAAGCCAA
1 ACACAAAGTAAGCTACGAAGAGCTTAGTAAGCCAA
81388029 ACACA
1 ACACA
81388034 TTGGTTTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.44, C:0.21, G:0.20, T:0.15
Consensus pattern (35 bp):
ACACAAAGTAAGCTACGAAGAGCTTAGTAAGCCAA
Found at i:81388024 original size:19 final size:19
Alignment explanation
Indices: 81387965--81388025 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
81387955 AAGCACACAG
*
81387965 AGTAAGCTACGATGAGCTT
1 AGTAAGCTACGAAGAGCTT
* * **
81387984 AGTAAGC--CAAACA-CAA
1 AGTAAGCTACGAAGAGCTT
81388000 AGTAAGCTACGAAGAGCTT
1 AGTAAGCTACGAAGAGCTT
81388019 AGTAAGC
1 AGTAAGC
81388026 CAAACACATT
Statistics
Matches: 30, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
16 8 0.27
17 3 0.10
18 4 0.13
19 15 0.50
ACGTcount: A:0.41, C:0.18, G:0.23, T:0.18
Consensus pattern (19 bp):
AGTAAGCTACGAAGAGCTT
Found at i:81394605 original size:39 final size:40
Alignment explanation
Indices: 81394510--81394771 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
81394500 TTGAATGATG
*
81394510 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
81394548 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
81394589 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
81394628 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
81394667 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
81394706 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
81394745 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
81394772 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:81423071 original size:264 final size:264
Alignment explanation
Indices: 81422601--81423131 Score: 1062
Period size: 264 Copynumber: 2.0 Consensus size: 264
81422591 CCATCCCATA
81422601 ACTGTTCTAGTTGGTATCAACTCGTTATTCTCATTCTCTATGACTGTGATACCTCCTTTCTTTGG
1 ACTGTTCTAGTTGGTATCAACTCGTTATTCTCATTCTCTATGACTGTGATACCTCCTTTCTTTGG
81422666 TATACACTGGACTGGACTTACCCATGAACTGTCTGAAATAGGGTAAATGATACCCGCATCTAACC
66 TATACACTGGACTGGACTTACCCATGAACTGTCTGAAATAGGGTAAATGATACCCGCATCTAACC
81422731 ACTTGATAATCTCTTTTTTCACTACATCCTTCATGACGGGGTTCAGCCTTCATTGTCCATCGATC
131 ACTTGATAATCTCTTTTTTCACTACATCCTTCATGACGGGGTTCAGCCTTCATTGTCCATCGATC
81422796 ATCCTTTTTTCACCATCTTCCAGGATGATCTTGTGCATGTATACAGATGGACTAATACTGCGAAT
196 ATCCTTTTTTCACCATCTTCCAGGATGATCTTGTGCATGTATACAGATGGACTAATACTGCGAAT
81422861 ATCG
261 ATCG
81422865 ACTGTTCTAGTTGGTATCAACTCGTTATTCTCATTCTCTATGACTGTGATACCTCCTTTCTTTGG
1 ACTGTTCTAGTTGGTATCAACTCGTTATTCTCATTCTCTATGACTGTGATACCTCCTTTCTTTGG
81422930 TATACACTGGACTGGACTTACCCATGAACTGTCTGAAATAGGGTAAATGATACCCGCATCTAACC
66 TATACACTGGACTGGACTTACCCATGAACTGTCTGAAATAGGGTAAATGATACCCGCATCTAACC
81422995 ACTTGATAATCTCTTTTTTCACTACATCCTTCATGACGGGGTTCAGCCTTCATTGTCCATCGATC
131 ACTTGATAATCTCTTTTTTCACTACATCCTTCATGACGGGGTTCAGCCTTCATTGTCCATCGATC
81423060 ATCCTTTTTTCACCATCTTCCAGGATGATCTTGTGCATGTATACAGATGGACTAATACTGCGAAT
196 ATCCTTTTTTCACCATCTTCCAGGATGATCTTGTGCATGTATACAGATGGACTAATACTGCGAAT
81423125 ATCG
261 ATCG
81423129 ACT
1 ACT
81423132 ATGGTCCATC
Statistics
Matches: 267, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
264 267 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (264 bp):
ACTGTTCTAGTTGGTATCAACTCGTTATTCTCATTCTCTATGACTGTGATACCTCCTTTCTTTGG
TATACACTGGACTGGACTTACCCATGAACTGTCTGAAATAGGGTAAATGATACCCGCATCTAACC
ACTTGATAATCTCTTTTTTCACTACATCCTTCATGACGGGGTTCAGCCTTCATTGTCCATCGATC
ATCCTTTTTTCACCATCTTCCAGGATGATCTTGTGCATGTATACAGATGGACTAATACTGCGAAT
ATCG
Found at i:81432070 original size:28 final size:28
Alignment explanation
Indices: 81432030--81432104 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
81432020 ATTGCATGAC
81432030 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGACGGGCCA
* * *
81432058 TATGGAA-GTGATTGGGCCCGATGGTCCA
1 TAT-GAATGTGATTGGGCCTGACGGGCCA
81432086 TATGAATGTGATTGGGCCT
1 TATGAATGTGATTGGGCCT
81432105 AAAGGGGCCA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
27 3 0.07
28 35 0.85
29 3 0.07
ACGTcount: A:0.21, C:0.16, G:0.35, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGACGGGCCA
Found at i:81435573 original size:30 final size:30
Alignment explanation
Indices: 81435539--81435596 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
81435529 TTTTCGGGCA
* *
81435539 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
81435569 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
81435597 ATGTAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:81436072 original size:93 final size:93
Alignment explanation
Indices: 81435941--81436298 Score: 329
Period size: 93 Copynumber: 3.8 Consensus size: 93
81435931 TGTACGCCAC
* ** * *
81435941 TGTAAGACATGTCTGGGACATGCTTTGGCCACATTATGAGAGCCAGTGTAAGACCATGT-TAGGG
1 TGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCT-GGG
* *
81436005 ACATGGCATCGGCATCTAGACAAGGGCTAG
65 ACATGGCATCGGCATC-AGACTAGTGCTAG
* * **
81436035 TGTAAGACATGT-TTGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGGTT
1 TGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGGGA
* *
81436099 CATGGCATCGGCA-CAGGGATTAGTGCCAG
66 CATGGCATCGGCATCA--GACTAGTGCTAG
** * * * *
81436128 TGTAAGACATGTCTGGGACATGCATTGGCC-T-CGAAAGAGATAACCAGTGTAAGA-CGTGTCTG
1 TGTAAGACATGTCTGGGACATGCATCAGCCATAC-TATGAG--AGCCAGTGTAAGACCATGTCTG
* * * *
81436190 GGACA-CGCATCGGC-TAAGAGTTGTGCTAG
63 GGACATGGCATCGGCATCAGACTAGTGCTAG
* * *
81436219 TGTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCCAGTGTAAGGCCATGTCTA
1 TGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCATGTCTG
81436283 GGACATGGCATCGGCA
63 GGACATGGCATCGGCA
81436299 ATATATCCCA
Statistics
Matches: 211, Mismatches: 37, Indels: 31
0.76 0.13 0.11
Matches are distributed among these distances:
91 36 0.17
92 13 0.06
93 99 0.47
94 50 0.24
95 13 0.06
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (93 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCATCAGACTAGTGCTAG
Found at i:81436175 original size:47 final size:44
Alignment explanation
Indices: 81436124--81436244 Score: 136
Period size: 47 Copynumber: 2.7 Consensus size: 44
81436114 GGGATTAGTG
*
81436124 CCAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAAAGAGAT-AA
1 CCAGTGTAAGACATGTCTGGGACATGCATCGG-CT---AAGAGATGAA
* * * **
81436171 CCAGTGTAAGACGTGTCTGGGACACGCATCGGCTAAGAGTTGTG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGAA
*
81436215 CTAGTGTAAGACATGTCTGGGACATGCATC
1 CCAGTGTAAGACATGTCTGGGACATGCATC
81436245 AGCACGCGTA
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
43 6 0.09
44 27 0.42
46 2 0.03
47 29 0.45
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (44 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGAGATGAA
Found at i:81440890 original size:46 final size:47
Alignment explanation
Indices: 81440688--81441002 Score: 179
Period size: 46 Copynumber: 6.7 Consensus size: 47
81440678 GGGTAAGGTT
*
81440688 CTGATGCCATGTCCCAGACATGGTCTTGCACTGGCTATCATCTTCGAGG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-ATC-TCGAGG
** * * * * *
81440737 CTGATGCCATGTCCTGGACATAGTTTTACACTAGCTCTCA-CGTAACTG-TG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-ATC-T--C-GAGG
** * * *
81440787 CCAATGCCATGTCCCAGACATGGTCATACACTGAC-ACATCTCGCA-G
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATATCTCG-AGG
* *
81440833 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTATGTCTCGAGG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGC-TATATCTCGAGG
* * * * *
81440879 CTGATG-CATGTCCTAGACAT-GACTTACACTAGC-ACTCGTCTCGATG
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-T-ATCTCGAGG
* * * * * *
81440925 -TCGATGTCATGCCCCAGACATGGTCTTACACTGGCTCTTATATTGTGG
1 CT-GATGCCATGTCCCAGACATGGTCTTACACTGGCT-ATATCTCGAGG
81440973 -TCGATG-CATGTCCCAGACAT-GTCTTACACT
1 CT-GATGCCATGTCCCAGACATGGTCTTACACT
81441003 AGCTCACACA
Statistics
Matches: 209, Mismatches: 41, Indels: 35
0.73 0.14 0.12
Matches are distributed among these distances:
44 12 0.06
45 18 0.09
46 65 0.31
47 25 0.12
48 25 0.12
49 35 0.17
50 28 0.13
51 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (47 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTATATCTCGAGG
Found at i:81440953 original size:94 final size:91
Alignment explanation
Indices: 81440834--81441005 Score: 231
Period size: 94 Copynumber: 1.8 Consensus size: 91
81440824 ATCTCGCAGC
* * *
81440834 CGATGCATGTCCCAGACATGTCTTACACTGG-CTTATGTCTCGAGG-CTGATGCATGTCCTAGAC
1 CGATGCATGCCCCAGACATGTCTTACACTGGCCTTATAT-T-GAGGTC-GATGCATGTCCCAGAC
81440897 ATGACTTACACTAGCACTCGTCTCGATGT
63 ATGACTTACACTAGCACTCGTCTCGATGT
*
81440926 CGATGTCATGCCCCAGACATGGTCTTACACTGGCTCTTATATTGTGGTCGATGCATGTCCCAGAC
1 CGATG-CATGCCCCAGACAT-GTCTTACACTGGC-CTTATATTGAGGTCGATGCATGTCCCAGAC
*
81440991 ATGTCTTACACTAGC
63 ATGACTTACACTAGC
81441006 TCACACAAGT
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
92 5 0.07
93 13 0.19
94 44 0.63
95 2 0.03
96 6 0.09
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.30
Consensus pattern (91 bp):
CGATGCATGCCCCAGACATGTCTTACACTGGCCTTATATTGAGGTCGATGCATGTCCCAGACATG
ACTTACACTAGCACTCGTCTCGATGT
Found at i:81440983 original size:140 final size:141
Alignment explanation
Indices: 81440690--81441002 Score: 341
Period size: 140 Copynumber: 2.2 Consensus size: 141
81440680 GTAAGGTTCT
* *
81440690 GATGCCATGTCCCAGACATGGTCTTGCACTGGCTATCATCTTCGAGGCTGATGCCATGTCCTGGA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCTTCGAGGCTGATGCCATGTCCTAGA
** * *
81440755 CATAGTTTTACACTAGCTCTCACGTAACTGTGCCAATGCCATGTCCCAGACATGGTCATACACTG
64 CATAGACTTACACTAGCACT-ACGT-ACTGTGCCAATGCCATGCCCCAGACATGGTCATACACTG
*
81440820 ACACATCTCGCAGCC
127 ACACATATCGCAGCC
*
81440835 GATGCATGTCCCAGACATGTCTTACACTGGCT-T-ATGTCTCGAGGCTGATG-CATGTCCTAGAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCT-TCGAGGCTGATGCCATGTCCTAGAC
* * * * *
81440897 AT-GACTTACACTAGCACT-CGT-CTCGATGTCGATGTCATGCCCCAGACATGGTCTTACACTGG
65 ATAGACTTACACTAGCACTACGTACT-G-TGCCAATGCCATGCCCCAGACATGGTCATACACTGA
* * ** *
81440959 CTCTTATATTGTGGTC
128 CAC--ATATCGCAGCC
81440975 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
81441003 AGCTCACACA
Statistics
Matches: 145, Mismatches: 18, Indels: 15
0.81 0.10 0.08
Matches are distributed among these distances:
136 2 0.01
137 1 0.01
138 35 0.24
140 47 0.32
141 16 0.11
142 13 0.09
143 13 0.09
144 14 0.10
145 4 0.03
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (141 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTTCGAGGCTGATGCCATGTCCTAGACA
TAGACTTACACTAGCACTACGTACTGTGCCAATGCCATGCCCCAGACATGGTCATACACTGACAC
ATATCGCAGCC
Found at i:81445955 original size:18 final size:18
Alignment explanation
Indices: 81445912--81445955 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
81445902 GCTTGCGACT
*
81445912 GAAGTGGCCCAGGCTCTC
1 GAAGTGGTCCAGGCTCTC
*
81445930 GAAGTGGTCCGGGCTCTC
1 GAAGTGGTCCAGGCTCTC
81445948 GAAGTGGT
1 GAAGTGGT
81445956 GTTCTGTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.16, C:0.25, G:0.39, T:0.20
Consensus pattern (18 bp):
GAAGTGGTCCAGGCTCTC
Found at i:81451013 original size:27 final size:27
Alignment explanation
Indices: 81450983--81451133 Score: 155
Period size: 27 Copynumber: 5.6 Consensus size: 27
81450973 ATATTGAGCC
* *
81450983 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
81451010 CGCACACTTAGTGCTACGTAATCCAA-T
1 CGCACACTTAGTGCTACATAAT-CAACT
*
81451037 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
81451065 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
*
81451092 CGCACACTTAGTGC-ATCATAGTCGAA-T
1 CGCACACTTAGTGCTA-CATAATC-AACT
81451119 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81451134 GTACAATTTA
Statistics
Matches: 107, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
26 1 0.01
27 80 0.75
28 26 0.24
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:81451075 original size:55 final size:54
Alignment explanation
Indices: 81450983--81451133 Score: 173
Period size: 55 Copynumber: 2.8 Consensus size: 54
81450973 ATATTGAGCC
* * * *
81450983 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCCAA-T
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAAT-CAATT
** **
81451037 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAATT
81451092 CGCACACTTAGTGC-ATCATAGTCGAA-TCGCACACTTAGTGCT
1 CGCACACTTAGTGCTA-CATAGTC-AACTCGCACACTTAGTGCT
81451134 GTACAATTTA
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
54 39 0.46
55 45 0.54
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAATT
Found at i:81458932 original size:27 final size:27
Alignment explanation
Indices: 81458902--81459079 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
81458892 ATATTGAGCC
* *
81458902 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
81458929 CGCACACTTAGTGCTACGTAATCCAA-T
1 CGCACACTTAGTGCTACATAAT-CAACT
*
81458956 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
81458984 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
81459011 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
81459038 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
81459065 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81459080 GTACAATTTA
Statistics
Matches: 129, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.01
27 102 0.79
28 26 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:81466645 original size:40 final size:40
Alignment explanation
Indices: 81466590--81466724 Score: 182
Period size: 40 Copynumber: 3.3 Consensus size: 40
81466580 TATTCGGATG
* * *
81466590 ATATCCGGGCTAAGTCCCGAAGGTATTGGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTGCT
*
81466630 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTGCT
* *
81466673 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTGCT
81466713 ATATCC-GGCTAA
1 ATATCCGGGCTAA
81466725 ATCCTAAAGA
Statistics
Matches: 84, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
39 6 0.07
40 41 0.49
41 1 0.01
43 36 0.43
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTGCT
Found at i:81466685 original size:43 final size:43
Alignment explanation
Indices: 81466594--81466708 Score: 164
Period size: 43 Copynumber: 2.7 Consensus size: 43
81466584 CGGATGATAT
* * *
81466594 CCGGGCTAAGTCCCGAAGGTATTGGTGC-A--AGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATAC
* *
81466634 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTAGTTGCTATAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATAC
81466677 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
81466709 TGCTATATCC
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
40 25 0.38
41 1 0.02
43 40 0.61
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (43 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATAC
Found at i:81469050 original size:61 final size:61
Alignment explanation
Indices: 81468982--81469103 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
81468972 TTATAGTATA
*
81468982 TGTTATTCATTCACATTCAATAAGAACTTAAATCGAGCATACAAAGCCTAACTCATGCATT
1 TGTTATTCATTCACATTCAATAAGAACTTAAATCAAGCATACAAAGCCTAACTCATGCATT
81469043 TGTTATTCATTCACATTCAATAAGAACTTAAATCAAGCATACAAAGCCTAACTCATGCATT
1 TGTTATTCATTCACATTCAATAAGAACTTAAATCAAGCATACAAAGCCTAACTCATGCATT
81469104 CGAGACCAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (61 bp):
TGTTATTCATTCACATTCAATAAGAACTTAAATCAAGCATACAAAGCCTAACTCATGCATT
Found at i:81472261 original size:71 final size:71
Alignment explanation
Indices: 81472145--81472286 Score: 284
Period size: 71 Copynumber: 2.0 Consensus size: 71
81472135 GAAATGTTGA
81472145 AAAGTCAACATTAGGTATGTTGATGACATAAGGTGTACTAAAATAATGCCTAAGCCTAGCTATCA
1 AAAGTCAACATTAGGTATGTTGATGACATAAGGTGTACTAAAATAATGCCTAAGCCTAGCTATCA
81472210 TCTTTT
66 TCTTTT
81472216 AAAGTCAACATTAGGTATGTTGATGACATAAGGTGTACTAAAATAATGCCTAAGCCTAGCTATCA
1 AAAGTCAACATTAGGTATGTTGATGACATAAGGTGTACTAAAATAATGCCTAAGCCTAGCTATCA
81472281 TCTTTT
66 TCTTTT
81472287 TCTTTCATTT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32
Consensus pattern (71 bp):
AAAGTCAACATTAGGTATGTTGATGACATAAGGTGTACTAAAATAATGCCTAAGCCTAGCTATCA
TCTTTT
Found at i:81477934 original size:64 final size:64
Alignment explanation
Indices: 81477829--81477948 Score: 161
Period size: 64 Copynumber: 1.9 Consensus size: 64
81477819 TTTGGGAACG
**
81477829 AAGTTGAGTTTCAACACGGCATTTCATCAGCAAACTAATGGACAGTTGGAAAGAGTTAGGAGCC
1 AAGTTGAGTTTCAACACGGCATTTCATCAGCAAACTAATGGACAGTCAGAAAGAGTTAGGAGCC
* * * * *
81477893 AAGTTGAGTTTCAGCACGGCTTTTTATCCA-CAGACTGATGGACAGTCAGAAAGAGT
1 AAGTTGAGTTTCAACACGGCATTTCAT-CAGCAAACTAATGGACAGTCAGAAAGAGT
81477949 GATACAGATC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
64 46 0.96
65 2 0.04
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (64 bp):
AAGTTGAGTTTCAACACGGCATTTCATCAGCAAACTAATGGACAGTCAGAAAGAGTTAGGAGCC
Found at i:81480092 original size:47 final size:49
Alignment explanation
Indices: 81479943--81480261 Score: 236
Period size: 47 Copynumber: 6.7 Consensus size: 49
81479933 TTATTTGTGT
* ** *
81479943 GCCAGGGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGAAGATGATA
* ** * *
81479989 GCCAGTGTAAGACCATGTCGGGGA-ATGGCATC-TTCATTG-AGACGAGT-
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGAAGATGA-TA
* *
81480036 GCTACTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGAAGATGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGAAGATGATA
* * * * *
81480083 GCCAGTGTAA-AACATGTCTGGGTCAT-GCATCGGCTAAG-AGTTG-T-
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGAAGATGATA
* * * * * *
81480127 GCTAGTATAAGACCATGTCTGGGACATGGCATCAG-CACGTATATACGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACG-A-AGATGATA
* * * * * * *
81480177 GCTAGTGTAGGACCATGTCTGGGATATGGCATTGGGCTCGATGATGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGAAGATGATA
81480226 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
81480262 AACTTATCCC
Statistics
Matches: 207, Mismatches: 48, Indels: 33
0.72 0.17 0.11
Matches are distributed among these distances:
44 8 0.04
45 17 0.08
46 43 0.21
47 68 0.33
48 2 0.01
49 35 0.17
50 31 0.15
51 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (49 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGAAGATGATA
Found at i:81492108 original size:79 final size:82
Alignment explanation
Indices: 81491997--81492181 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
81491987 GCTACTCGTT
* * * *
81491997 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACCCGCACAAATGCCTTC-GGATCTTAACCC
* *
81492060 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
81492077 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCCCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACCCGCACAAATGCCTTCGGATCTTAACCCG
* *
81492140 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
81492157 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81492182 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACCCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:81492116 original size:39 final size:40
Alignment explanation
Indices: 81491997--81492181 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
81491987 GCTACTCGTT
*
81491997 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
81492037 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
81492077 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
81492116 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
81492157 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81492182 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 77 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:81496250 original size:480 final size:480
Alignment explanation
Indices: 81495349--81496292 Score: 1588
Period size: 480 Copynumber: 2.0 Consensus size: 480
81495339 CTAATAATCT
81495349 TGTAACACCCCTAACCCGTATCCATCACCAGACTAGGGTTAAGCGGCATTACTAAACATATCAAA
1 TGTAACACCCCTAACCCGTATCCATCACCAGACTAGGGTTAAGCGGCATTACTAAACATATCAAA
* *
81495414 ACACTTCGTATTCATTTAACAAACATCATGGCATCATAGTTAAACATCAACATAAGTCTCTTTCT
66 ACACTTCGCATTCATTTAACAAACATCATGGCATCATAGTTAAACATCAACATAAGTCCCTTTCT
*
81495479 TAGGTCAATGAGACCTTAAACATGCATTAGGAAGAGATCGGGACTAAACCGAACATGTTCACAAC
131 TAGGTCAATGAGACCTTAAACATGCATTAGGAAGAGATCGGGACTAAACCGAACACGTTCACAAC
*
81495544 TTTCCACACTTAGAAAATTTTTCTATTCTGTTAAGGTTACACGCTCATGTGTCCAGGCCATGTGC
196 TTTCCACACTTAGAAAATTTTTCTATTCTGTTAAGGTTACACGCCCATGTGTCCAGGCCATGTGC
*
81495609 CTTACACGGGCAATATACACACCCATGTGAACCAGCCGTGCCAAAACAGGGTAACCATACTGACT
261 CTTACACGGGCAATATACACACCCATGTGAACCAACCGTGCCAAAACAGGGTAACCATACTGACT
*
81495674 TTCACCCACGGCCAATAGGCACGCCCACGCTCTATGAATGTGTGATACTAAGCTAGCTACTGACT
326 TTCACCCACGGCCAATAGGCACGCCCACGCTCTATGAACGTGTGATACTAAGCTAGCTACTGACT
* *
81495739 TTAGCCCACGGCCATGTGACACGCCCGTGTGTCAAGGTCGTGTAATTTTTTTAAAGAATACTGCT
391 TTAGCCCACGGCCATGTGACACGCACGTGTGTCAAGGCCGTGTAATTTTTTTAAAGAATACTGCT
81495804 TTTCTTACACGGTCAGGGGACCAAA
456 TTTCTTACACGGTCAGGGGACCAAA
* *
81495829 TGTAACACCCCTAACTCGTATCCATCACC-GAACTAGGGTTAAGCGGCGTTACTAAACATATCAA
1 TGTAACACCCCTAACCCGTATCCATCACCAG-ACTAGGGTTAAGCGGCATTACTAAACATATCAA
* *
81495893 AACACTTTGCATTCATTTCACAAACATCATGGCATCATA-TTCAAACATCAACATAAGTCCCTTT
65 AACACTTCGCATTCATTTAACAAACATCATGGCATCATAGTT-AAACATCAACATAAGTCCCTTT
* *
81495957 CTTAGGTCAATGAGACCTTAAACATGTATTAGGAAGAGGTCGGGACTAAACCGAACACGTTCACA
129 CTTAGGTCAATGAGACCTTAAACATGCATTAGGAAGAGATCGGGACTAAACCGAACACGTTCACA
* * *
81496022 ACTTTCCACACTTAGAAAATTTTTCTATTCTGTTAAGGTTACATGCCCGTGTGTCCAGGCCGTGT
194 ACTTTCCACACTTAGAAAATTTTTCTATTCTGTTAAGGTTACACGCCCATGTGTCCAGGCCATGT
* * *
81496087 GCCTTACACGGGC-ATCATACACACCCATGTGAACCAACTGTGCCAAAATAGGGTGACCATACTG
259 GCCTTACACGGGCAAT-ATACACACCCATGTGAACCAACCGTGCCAAAACAGGGTAACCATACTG
* ** * **
81496151 ACTTTTACCCACGGCCAATAGGCACGCCCGTGTTCTATGGCCGTGTGATACTAAGCTAGCTACTG
323 ACTTTCACCCACGGCCAATAGGCACGCCCACGCTCTATGAACGTGTGATACTAAGCTAGCTACTG
* *
81496216 ACTTTAGCCCACGGTCATGTGACACGCACGTGTGTCAAGGCCGTGTAATTTTTTTAGAGAATACT
388 ACTTTAGCCCACGGCCATGTGACACGCACGTGTGTCAAGGCCGTGTAATTTTTTTAAAGAATACT
81496281 GCTTTTCTTACA
453 GCTTTTCTTACA
81496293 TGGCCACAAG
Statistics
Matches: 433, Mismatches: 28, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
479 5 0.01
480 428 0.99
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (480 bp):
TGTAACACCCCTAACCCGTATCCATCACCAGACTAGGGTTAAGCGGCATTACTAAACATATCAAA
ACACTTCGCATTCATTTAACAAACATCATGGCATCATAGTTAAACATCAACATAAGTCCCTTTCT
TAGGTCAATGAGACCTTAAACATGCATTAGGAAGAGATCGGGACTAAACCGAACACGTTCACAAC
TTTCCACACTTAGAAAATTTTTCTATTCTGTTAAGGTTACACGCCCATGTGTCCAGGCCATGTGC
CTTACACGGGCAATATACACACCCATGTGAACCAACCGTGCCAAAACAGGGTAACCATACTGACT
TTCACCCACGGCCAATAGGCACGCCCACGCTCTATGAACGTGTGATACTAAGCTAGCTACTGACT
TTAGCCCACGGCCATGTGACACGCACGTGTGTCAAGGCCGTGTAATTTTTTTAAAGAATACTGCT
TTTCTTACACGGTCAGGGGACCAAA
Found at i:81496487 original size:25 final size:26
Alignment explanation
Indices: 81496454--81496508 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 26
81496444 TCATTCATGC
81496454 CATAGTTGCAAATTAACATTACATAT
1 CATAGTTGCAAATTAACATTACATAT
81496480 CATA-TTGCAAATTAACATTACATAT
1 CATAGTTGCAAATTAACATTACATAT
81496505 CATA
1 CATA
81496509 AACCTTTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 25 0.86
26 4 0.14
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.35
Consensus pattern (26 bp):
CATAGTTGCAAATTAACATTACATAT
Found at i:81497130 original size:29 final size:30
Alignment explanation
Indices: 81497096--81497159 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
81497086 CAAGTAGTCG
*
81497096 AAGCTAG-TTAAATC-GCACACTTAGTGCCA
1 AAGCTAGTTTAAATCAAC-CACTTAGTGCCA
81497125 AAGCTAGTTTAAATCAACCACTTAGTGCCA
1 AAGCTAGTTTAAATCAACCACTTAGTGCCA
81497155 AAGCT
1 AAGCT
81497160 TCCGAATCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 7 0.22
30 24 0.75
31 1 0.03
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (30 bp):
AAGCTAGTTTAAATCAACCACTTAGTGCCA
Found at i:81500856 original size:4 final size:4
Alignment explanation
Indices: 81500847--81500878 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
81500837 AGGAGATGAA
81500847 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
81500879 TGTTCCATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:81502020 original size:30 final size:30
Alignment explanation
Indices: 81501986--81502082 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
81501976 AGCTCACTCC
81501986 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
81502016 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
81502046 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
81502076 TAGCTCA
1 TAGCTCA
81502083 TTTTAGTTTA
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 1 0.02
30 52 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:81503062 original size:10 final size:10
Alignment explanation
Indices: 81503033--81503064 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
81503023 TTTTTCACAA
*
81503033 AATTTTTTTC
1 AATTTTTTTT
81503043 AATTTTTTTT
1 AATTTTTTTT
81503053 AATTTTTTTT
1 AATTTTTTTT
81503063 AA
1 AA
81503065 AGATAGATAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (10 bp):
AATTTTTTTT
Found at i:81506368 original size:30 final size:31
Alignment explanation
Indices: 81506334--81506430 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
81506324 AGCTCACTCC
*
81506334 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
81506364 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
81506394 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
81506424 TAGCTCA
1 TAGCTCA
81506431 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:81509311 original size:13 final size:14
Alignment explanation
Indices: 81509290--81509327 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
81509280 TATACAAGTT
81509290 TGAAAAAAAAATT-
1 TGAAAAAAAAATTC
81509303 TCGAAAAAAAAATTC
1 T-GAAAAAAAAATTC
81509318 TGAAAAAAAA
1 TGAAAAAAAA
81509328 GTGATTTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.04
14 21 0.91
15 1 0.04
ACGTcount: A:0.68, C:0.05, G:0.08, T:0.18
Consensus pattern (14 bp):
TGAAAAAAAAATTC
Found at i:81511788 original size:23 final size:22
Alignment explanation
Indices: 81511737--81511788 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
81511727 CCTCGTCTTT
*
81511737 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
81511759 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
81511782 TTCTTTT
1 TTCTTTT
81511789 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:81518404 original size:27 final size:27
Alignment explanation
Indices: 81518373--81518550 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
81518363 TAAATTGTAC
81518373 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81518400 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
81518426 ATGCACTAAGTGTGCGAATTCACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81518454 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81518482 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81518509 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81518536 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81518551 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81518487 original size:82 final size:81
Alignment explanation
Indices: 81518374--81518524 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
81518364 AAATTGTACA
* *
81518374 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81518438 TGCGAATTCACCATGCG
65 TGCGAATTCACCATGCG
** *
81518455 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
81518520 TGCGA
65 TGCGA
81518525 GTTGATTATA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.24
82 47 0.75
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTCACCATGCG
Found at i:81527001 original size:80 final size:81
Alignment explanation
Indices: 81526864--81527021 Score: 309
Period size: 80 Copynumber: 2.0 Consensus size: 81
81526854 TAATGATCAC
81526864 ATCTCTTAAACATAAACGTAAAACAAAAAAAAGCATGCTTACGATACAAGATTCAAAGGTAATGC
1 ATCTCTTAAACATAAACGTAAAACAAAAAAAAGCATGCTTACGATACAAGATTCAAAGGTAATGC
81526929 AGAGAATATCCTTAAT
66 AGAGAATATCCTTAAT
81526945 ATCTCTTAAACATAAACGTAAAACAAAAAAAA-CATGCTTACGATACAAGATTCAAAGGTAATGC
1 ATCTCTTAAACATAAACGTAAAACAAAAAAAAGCATGCTTACGATACAAGATTCAAAGGTAATGC
81527009 AGAGAATATCCTT
66 AGAGAATATCCTT
81527022 TCTTTTTTTC
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
80 45 0.58
81 32 0.42
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.23
Consensus pattern (81 bp):
ATCTCTTAAACATAAACGTAAAACAAAAAAAAGCATGCTTACGATACAAGATTCAAAGGTAATGC
AGAGAATATCCTTAAT
Found at i:81535521 original size:31 final size:31
Alignment explanation
Indices: 81535463--81535521 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
81535453 AAAGTATACT
* ****
81535463 AACAGTCACTCAACTTTGATCTCAATAATAA
1 AACAGTCACTCAACTTTCAAAGAAATAATAA
81535494 AACAGTCACTCAACTTTCAAAGAAATAA
1 AACAGTCACTCAACTTTCAAAGAAATAA
81535522 CAAATCAATC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.46, C:0.22, G:0.07, T:0.25
Consensus pattern (31 bp):
AACAGTCACTCAACTTTCAAAGAAATAATAA
Found at i:81536585 original size:29 final size:28
Alignment explanation
Indices: 81536543--81536601 Score: 100
Period size: 29 Copynumber: 2.1 Consensus size: 28
81536533 TACCTTCTCT
81536543 TTCCCTTAGGGCTTTCATTTTCATTTGG
1 TTCCCTTAGGGCTTTCATTTTCATTTGG
*
81536571 NTTCCCTTTGGGCTTTCATTTTCATTTGG
1 -TTCCCTTAGGGCTTTCATTTTCATTTGG
81536600 TT
1 TT
81536602 TACGTCGATC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.08, C:0.20, G:0.17, T:0.53
Consensus pattern (28 bp):
TTCCCTTAGGGCTTTCATTTTCATTTGG
Found at i:81540716 original size:12 final size:11
Alignment explanation
Indices: 81540702--81540754 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
81540692 AACAGGGAAG
81540702 AAAGAAAGAAA
1 AAAGAAAGAAA
*
81540713 GAA-AAAGAAA
1 AAAGAAAGAAA
*
81540723 AAGGAAAGAAA
1 AAAGAAAGAAA
*
81540734 AAGAGAAAAGAAT
1 AA-AG-AAAGAAA
81540747 AAAGAAAG
1 AAAGAAAG
81540755 CCATTGCCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
10 8 0.24
11 15 0.44
12 3 0.09
13 8 0.24
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (11 bp):
AAAGAAAGAAA
Found at i:81540729 original size:7 final size:6
Alignment explanation
Indices: 81540710--81540753 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
81540700 AGAAAGAAAG
*
81540710 AAAGAA AAAGAA AAAG-G AAAGAA AAAGAGA AAAGAA TAAAGAA A
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGA-A AAAGAA -AAAGAA A
81540754 GCCATTGCCT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
5 4 0.12
6 17 0.52
7 12 0.36
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:81540731 original size:17 final size:17
Alignment explanation
Indices: 81540699--81540743 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 17
81540689 CGAAACAGGG
*
81540699 AAGAAAGAAAGAAAGAAA
1 AAGAAA-AAGGAAAGAAA
81540717 AAGAAAAAGGAAAGAAA
1 AAGAAAAAGGAAAGAAA
81540734 AAGAGAAAAG
1 AAGA-AAAAG
81540744 AATAAAGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AAGAAAAAGGAAAGAAA
Found at i:81540731 original size:25 final size:24
Alignment explanation
Indices: 81540699--81540754 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
81540689 CGAAACAGGG
81540699 AAGAAAGAAAGAA-AGAAAAAGAA-A
1 AAGAAAGAAA-AAGAG-AAAAGAATA
81540723 AAGGAAAGAAAAAGAGAAAAGAATA
1 AA-GAAAGAAAAAGAGAAAAGAATA
81540748 AAGAAAG
1 AAGAAAG
81540755 CCATTGCCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
24 16 0.55
25 13 0.45
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (24 bp):
AAGAAAGAAAAAGAGAAAAGAATA
Found at i:81542898 original size:11 final size:11
Alignment explanation
Indices: 81542882--81542925 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
81542872 TTCTTTGGAT
81542882 TCAAATATGAC
1 TCAAATATGAC
*
81542893 TCAAATATGAT
1 TCAAATATGAC
* *
81542904 TTAAATATGAA
1 TCAAATATGAC
81542915 TCAAATATGAC
1 TCAAATATGAC
81542926 AAATCAGATC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.48, C:0.11, G:0.09, T:0.32
Consensus pattern (11 bp):
TCAAATATGAC
Found at i:81542904 original size:22 final size:22
Alignment explanation
Indices: 81542879--81542924 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
81542869 AGCTTCTTTG
*
81542879 GATTCAAATATGACTCAAATAT
1 GATTCAAATATGAATCAAATAT
*
81542901 GATTTAAATATGAATCAAATAT
1 GATTCAAATATGAATCAAATAT
81542923 GA
1 GA
81542925 CAAATCAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.48, C:0.09, G:0.11, T:0.33
Consensus pattern (22 bp):
GATTCAAATATGAATCAAATAT
Found at i:81543131 original size:90 final size:90
Alignment explanation
Indices: 81543022--81543340 Score: 602
Period size: 90 Copynumber: 3.5 Consensus size: 90
81543012 ATTTCTTTGG
* * **
81543022 TTATTGTCTGTCATGTGCATGACAGAAACAAATTTGTTTGTATTAAATTGTTTGGTTATTGTACA
1 TTATTGTCTGTTATATGCATGACAGAAATGAATTTGTTTGTATTAAATTGTTTGGTTATTGTACA
81543087 AGACATAAATGGATTTCTTTGTATT
66 AGACATAAATGGATTTCTTTGTATT
81543112 TTATTGTCTGTTATATGCATGACAGAAATGAATTTGTTTGTATTAAATTGTTTGGTTATTGTACA
1 TTATTGTCTGTTATATGCATGACAGAAATGAATTTGTTTGTATTAAATTGTTTGGTTATTGTACA
81543177 AGACATAAATGGATTTCTTTGTATT
66 AGACATAAATGGATTTCTTTGTATT
81543202 TTATTGTCTGTTATATGCATGACAGAAATGAATTTGTTTGTATTAAATTGTTTGGTTATTGTACA
1 TTATTGTCTGTTATATGCATGACAGAAATGAATTTGTTTGTATTAAATTGTTTGGTTATTGTACA
81543267 AGACATAAATGGATTTCTTTGTATT
66 AGACATAAATGGATTTCTTTGTATT
81543292 TTATTGTCTGTTATATGCATGACAGAAATGAATTTGTTTGTATTAAATT
1 TTATTGTCTGTTATATGCATGACAGAAATGAATTTGTTTGTATTAAATT
81543341 ATTTTTTGTA
Statistics
Matches: 225, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 225 1.00
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.46
Consensus pattern (90 bp):
TTATTGTCTGTTATATGCATGACAGAAATGAATTTGTTTGTATTAAATTGTTTGGTTATTGTACA
AGACATAAATGGATTTCTTTGTATT
Found at i:81545367 original size:71 final size:67
Alignment explanation
Indices: 81545261--81545478 Score: 230
Period size: 63 Copynumber: 3.2 Consensus size: 67
81545251 CACTTAAAAC
* * * *
81545261 CGAATGCATATATAATTTAAAACATGAATAGCCGAATGTGTATATACATATATGCTTAACAAATA
1 CGAATGTATATACAATTT-AAACATGAATAGCCGAATG-ATATATAC--ATATGCATAACAAATA
81545326 TTATCA
62 TTATCA
* *
81545332 TCGAATGTATATACAGTTTAAACATGAATAGCCGAATGCT-TATAC--A--CATAACAAATATTA
1 -CGAATGTATATACAATTTAAACATGAATAGCCGAATGATATATACATATGCATAACAAATATTA
81545392 TCA
65 TCA
* * * *
81545395 CCGAATGTATATACACTTTAAACATGAATAGCTGAATGCATATATACATATGCACAACAAGTATT
1 -CGAATGTATATACAATTTAAACATGAATAGCCGAATG-ATATATACATATGCATAACAAATATT
81545460 ATCA
64 ATCA
*
81545464 CTGAATGTAAATACA
1 C-GAATGTATATACA
81545479 TGTTCTTCAA
Statistics
Matches: 127, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
63 51 0.40
64 1 0.01
65 6 0.05
67 1 0.01
68 1 0.01
69 32 0.25
70 1 0.01
71 19 0.15
72 15 0.12
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.30
Consensus pattern (67 bp):
CGAATGTATATACAATTTAAACATGAATAGCCGAATGATATATACATATGCATAACAAATATTAT
CA
Found at i:81545368 original size:31 final size:30
Alignment explanation
Indices: 81545333--81545443 Score: 84
Period size: 31 Copynumber: 3.5 Consensus size: 30
81545323 ATATTATCAT
81545333 CGAATGTATATACAGTTTAAACATGAATAGC
1 CGAATGTATATACA-TTTAAACATGAATAGC
** *
81545364 CGAATGCT-TATACACATAACAAAT-ATTATCA-C
1 CGAATG-TATATACATTTAA-ACATGA--AT-AGC
81545396 CGAATGTATATACACTTTAAACATGAATAGC
1 CGAATGTATATACA-TTTAAACATGAATAGC
*
81545427 TGAATGCATATATACAT
1 CGAATG--TATATACAT
81545444 ATGCACAACA
Statistics
Matches: 62, Mismatches: 7, Indels: 21
0.69 0.08 0.23
Matches are distributed among these distances:
30 5 0.08
31 24 0.39
32 20 0.32
33 13 0.21
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (30 bp):
CGAATGTATATACATTTAAACATGAATAGC
Found at i:81545675 original size:41 final size:41
Alignment explanation
Indices: 81545603--81545709 Score: 126
Period size: 41 Copynumber: 2.6 Consensus size: 41
81545593 ATCGGCTTTT
* * * * *
81545603 AGCCTGCTAGACTTATAGTCC-GAATTGTTTCACCGGCATTA
1 AGCCTGCTAGACATAAAG-CCTGAAATATTTCACCGGCATCA
81545644 AGCCTGCTAGACATAAAGCCTGAAATATTTCACCGGCATCA
1 AGCCTGCTAGACATAAAGCCTGAAATATTTCACCGGCATCA
* * *
81545685 AACCTGCTAGACGTAAAGTCTGAAA
1 AGCCTGCTAGACATAAAGCCTGAAA
81545710 CATTCGATCA
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 2 0.04
41 55 0.96
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (41 bp):
AGCCTGCTAGACATAAAGCCTGAAATATTTCACCGGCATCA
Found at i:81546210 original size:8 final size:8
Alignment explanation
Indices: 81546197--81546230 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
81546187 ATCCGAGCAT
81546197 TATATACA
1 TATATACA
*
81546205 TATATATA
1 TATATACA
*
81546213 CATATACA
1 TATATACA
81546221 TATATACA
1 TATATACA
81546229 TA
1 TA
81546231 CTCATACATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (8 bp):
TATATACA
Found at i:81549059 original size:20 final size:20
Alignment explanation
Indices: 81549034--81549073 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
81549024 CAAAAATATG
81549034 ATATTTATTTTAATTAATTT
1 ATATTTATTTTAATTAATTT
81549054 ATATTTATTTTAATTAATTT
1 ATATTTATTTTAATTAATTT
81549074 GATTTGTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
ATATTTATTTTAATTAATTT
Found at i:81551054 original size:50 final size:50
Alignment explanation
Indices: 81550823--81551054 Score: 261
Period size: 50 Copynumber: 4.7 Consensus size: 50
81550813 AATAATAACA
* ** * *
81550823 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCATGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * * ** * *
81550872 TGCCAATGCCATATCCCAGATATGGTTTTACATGGGAGTTTTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * ** *
81550922 TGCCCATGCTATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
81550972 TGCCAACGCCGTGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
81551022 TGCCAACGCCATGTCCCAGACATGGTCTTACAT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAT
81551055 TTGTATTCGA
Statistics
Matches: 154, Mismatches: 27, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
48 1 0.01
49 40 0.26
50 113 0.73
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:81557326 original size:85 final size:85
Alignment explanation
Indices: 81557183--81557350 Score: 261
Period size: 85 Copynumber: 2.0 Consensus size: 85
81557173 CTATTCCGGT
* *
81557183 AACGGAGACGAGTTAGGGGTGTTACACCAACTCACCAAGGAATTGCCCCAACTTACCAAGAAG-T
1 AACGGAGACGAGTTAGGAGTGTTACACCAACTCACCAAGAAATTGCCCCAACTTACCAAGAAGCT
*
81557247 TTCCCCAAGAGAAAAGCTTGC
66 GT-CCCAAGAGAAAAGCTTGC
81557268 AACGGAGAC-AGATTAGGAGTGTTACACCAACTCACCAAGAAATAT-CCCCAACTTACCAAGAAG
1 AACGGAGACGAG-TTAGGAGTGTTACACCAACTCACCAAGAAAT-TGCCCCAACTTACCAAGAAG
81557331 CTGTCCCAAGAGAAAAGCTT
64 CTGTCCCAAGAGAAAAGCTT
81557351 TCATTCAAGA
Statistics
Matches: 77, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
84 2 0.03
85 72 0.94
86 3 0.04
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (85 bp):
AACGGAGACGAGTTAGGAGTGTTACACCAACTCACCAAGAAATTGCCCCAACTTACCAAGAAGCT
GTCCCAAGAGAAAAGCTTGC
Found at i:81558415 original size:50 final size:50
Alignment explanation
Indices: 81558331--81558430 Score: 130
Period size: 50 Copynumber: 2.0 Consensus size: 50
81558321 TCAAAAACCT
* *
81558331 CAATACCAACAGTCACATAAGCTGGTTTTCCATTTCAACAACAACAACAA
1 CAATACCAACAGTCACATAAGCTGATTTTCCATTTAAACAACAACAACAA
* * * *
81558381 CAATACCAACTA-TCATATAAGTTGATTTTTCATTTAAACAACAACGACAA
1 CAATACCAAC-AGTCACATAAGCTGATTTTCCATTTAAACAACAACAACAA
81558431 TATTACAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 42 0.98
51 1 0.02
ACGTcount: A:0.43, C:0.24, G:0.07, T:0.26
Consensus pattern (50 bp):
CAATACCAACAGTCACATAAGCTGATTTTCCATTTAAACAACAACAACAA
Found at i:81563094 original size:5 final size:5
Alignment explanation
Indices: 81563084--81563108 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
81563074 TAGTGATAGA
81563084 GAGAG GAGAG GAGAG GAGAG GAGAG
1 GAGAG GAGAG GAGAG GAGAG GAGAG
81563109 AGATCCAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (5 bp):
GAGAG
Found at i:81563595 original size:29 final size:29
Alignment explanation
Indices: 81563530--81563596 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
81563520 TATTTTTTTA
* **
81563530 AATGTATAATTAAATTAAATTAAAAATTT
1 AATGTATATTTAAACCAAATTAAAAATTT
* ** *
81563559 TACATATATTTAAACCAAATTCAAAATTT
1 AATGTATATTTAAACCAAATTAAAAATTT
81563588 AATGTATAT
1 AATGTATAT
81563597 AATTACAAAA
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.51, C:0.06, G:0.03, T:0.40
Consensus pattern (29 bp):
AATGTATATTTAAACCAAATTAAAAATTT
Found at i:81563921 original size:27 final size:29
Alignment explanation
Indices: 81563889--81563942 Score: 85
Period size: 27 Copynumber: 1.9 Consensus size: 29
81563879 AATTTTTTTT
*
81563889 TTCAAAATCTATAAAA-ATT-AAAACAAA
1 TTCAAAATATATAAAATATTCAAAACAAA
81563916 TTCAAAATATATAAAATATTCAAAACA
1 TTCAAAATATATAAAATATTCAAAACA
81563943 TTCTAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 15 0.62
28 3 0.12
29 6 0.25
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (29 bp):
TTCAAAATATATAAAATATTCAAAACAAA
Found at i:81563945 original size:27 final size:26
Alignment explanation
Indices: 81563889--81563950 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
81563879 AATTTTTTTT
*
81563889 TTCAAAATCTATAAAAATTAAAACAAA
1 TTCAAAATATATAAAAATTAAAAC-AA
81563916 TTCAAAATATATAAAATATTCAAAAC-A
1 TTCAAAATATATAAAA-ATT-AAAACAA
81563943 TTCTAAAA
1 TTC-AAAA
81563951 AATTCTATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
27 19 0.61
28 7 0.23
29 5 0.16
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.29
Consensus pattern (26 bp):
TTCAAAATATATAAAAATTAAAACAA
Found at i:81563955 original size:19 final size:18
Alignment explanation
Indices: 81563913--81563955 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
81563903 AAATTAAAAC
*
81563913 AAATTCAAAATATATAAA
1 AAATTCAAAACATATAAA
* *
81563931 ATATTCAAAACATTCTAAA
1 AAATTCAAAACA-TATAAA
81563950 AAATTC
1 AAATTC
81563956 TATATAGATT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATTCAAAACATATAAA
Found at i:81564362 original size:169 final size:169
Alignment explanation
Indices: 81564180--81564524 Score: 672
Period size: 169 Copynumber: 2.0 Consensus size: 169
81564170 ATTACTCAAC
*
81564180 CTTTTTTTTTCTTGGCATGAACGAGTTATGATAGAATGCGTCTTATTTATCTCGACGAAATGGGT
1 CTTTTTTTTTCTTGGCATGAACGAGTTATGATAGAATGCGTCTTATTTATCTCAACGAAATGGGT
81564245 GAAACGACCATTTCAATTCCCGAAATATTTACGATGTTCAGTATCTTATCCATGGCTTCTCTTGC
66 GAAACGACCATTTCAATTCCCGAAATATTTACGATGTTCAGTATCTTATCCATGGCTTCTCTTGC
81564310 ATTACTAAGCATGAGTGGTTTTGATGCAGAATTGATAGT
131 ATTACTAAGCATGAGTGGTTTTGATGCAGAATTGATAGT
81564349 CTTTTTTTTTCTTGGCATGAACGAGTTATGATAGAATGCGTCTTATTTATCTCAACGAAATGGGT
1 CTTTTTTTTTCTTGGCATGAACGAGTTATGATAGAATGCGTCTTATTTATCTCAACGAAATGGGT
81564414 GAAACGACCATTTCAATTCCCGAAATATTTACGATGTTCAGTATCTTATCCATGGCTTCTCTTGC
66 GAAACGACCATTTCAATTCCCGAAATATTTACGATGTTCAGTATCTTATCCATGGCTTCTCTTGC
*
81564479 ATTACTGAGCATGAGTGGTTTTGATGCAGAATTGATAGT
131 ATTACTAAGCATGAGTGGTTTTGATGCAGAATTGATAGT
81564518 CTTTTTT
1 CTTTTTT
81564525 GGAATAATTA
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
169 174 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.39
Consensus pattern (169 bp):
CTTTTTTTTTCTTGGCATGAACGAGTTATGATAGAATGCGTCTTATTTATCTCAACGAAATGGGT
GAAACGACCATTTCAATTCCCGAAATATTTACGATGTTCAGTATCTTATCCATGGCTTCTCTTGC
ATTACTAAGCATGAGTGGTTTTGATGCAGAATTGATAGT
Found at i:81566217 original size:21 final size:21
Alignment explanation
Indices: 81566193--81566236 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
81566183 GAAACTTTAG
*
81566193 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
81566214 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
81566235 TA
1 TA
81566237 ATTAGGTCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:81566478 original size:7 final size:7
Alignment explanation
Indices: 81566466--81566496 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
81566456 TCAAAAAAGT
81566466 ATTTCGA
1 ATTTCGA
81566473 ATTTCGA
1 ATTTCGA
81566480 ATTTCGA
1 ATTTCGA
*
81566487 ATTTCTA
1 ATTTCGA
81566494 ATT
1 ATT
81566497 CTAAAAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.48
Consensus pattern (7 bp):
ATTTCGA
Found at i:81566588 original size:27 final size:27
Alignment explanation
Indices: 81566550--81566605 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
81566540 AAAATATGTC
*
81566550 ATAAGTGCTAACGAAAGTGTTCTTTCA
1 ATAAGTGCTAACGAAAGTGTTATTTCA
81566577 ATAAGTGCTAACGAAAGTGTTATTTCA
1 ATAAGTGCTAACGAAAGTGTTATTTCA
81566604 AT
1 AT
81566606 TAGAACCCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (27 bp):
ATAAGTGCTAACGAAAGTGTTATTTCA
Found at i:81567482 original size:23 final size:24
Alignment explanation
Indices: 81567421--81567483 Score: 58
Period size: 23 Copynumber: 2.6 Consensus size: 24
81567411 CTCAAAACTT
*
81567421 TTTTATATATATTTAGATTTTTATTA
1 TTTTATA-AT-TTTAGATTTTGATTA
* *
81567447 TTTT-TAAAATTTA-ATTTTGATTC
1 TTTTAT-AATTTTAGATTTTGATTA
81567470 TTTTATAATTTTAG
1 TTTTATAATTTTAG
81567484 GATCAAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
23 18 0.60
24 5 0.17
25 2 0.07
26 5 0.17
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (24 bp):
TTTTATAATTTTAGATTTTGATTA
Found at i:81568851 original size:48 final size:48
Alignment explanation
Indices: 81568799--81568897 Score: 198
Period size: 48 Copynumber: 2.1 Consensus size: 48
81568789 TTGCCACAAC
81568799 TTTTTAAATAATTATATTATAACAATTTTTATACCATGTAAATTATTT
1 TTTTTAAATAATTATATTATAACAATTTTTATACCATGTAAATTATTT
81568847 TTTTTAAATAATTATATTATAACAATTTTTATACCATGTAAATTATTT
1 TTTTTAAATAATTATATTATAACAATTTTTATACCATGTAAATTATTT
81568895 TTT
1 TTT
81568898 GTAATATACT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (48 bp):
TTTTTAAATAATTATATTATAACAATTTTTATACCATGTAAATTATTT
Found at i:81568970 original size:21 final size:21
Alignment explanation
Indices: 81568902--81568972 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
81568892 TTTTTTGTAA
* * *
81568902 TATACTTTTTTGTCATAATTT
1 TATAATTTTTTGTTAAAATTT
* * *
81568923 TAGAATTTTTTAAGATTTAAATAT
1 TATAATTTTTT--G-TTAAAATTT
81568947 TATAATTTTTTGTTAAAATTT
1 TATAATTTTTTGTTAAAATTT
81568968 TATAA
1 TATAA
81568973 ATACACATAA
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
21 21 0.55
22 1 0.03
23 1 0.03
24 15 0.39
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (21 bp):
TATAATTTTTTGTTAAAATTT
Found at i:81569033 original size:20 final size:21
Alignment explanation
Indices: 81568990--81569034 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
81568980 TAAGTTATTT
* *
81568990 TTTATAATATAACTTTTTAGAA
1 TTTATAATATAAC-GTTTAAAA
81569012 TTTATAATATAA-GTTTAAAA
1 TTTATAATATAACGTTTAAAA
81569032 TTT
1 TTT
81569035 TTTAACTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 9 0.43
22 12 0.57
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.51
Consensus pattern (21 bp):
TTTATAATATAACGTTTAAAA
Found at i:81575104 original size:15 final size:15
Alignment explanation
Indices: 81575070--81575104 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
81575060 TATATATGCC
81575070 ACAATAATAAATACA
1 ACAATAATAAATACA
* *
81575085 TCAATAATAAATATA
1 ACAATAATAAATACA
81575100 ACAAT
1 ACAAT
81575105 GGCATAGAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.63, C:0.11, G:0.00, T:0.26
Consensus pattern (15 bp):
ACAATAATAAATACA
Found at i:81575418 original size:11 final size:11
Alignment explanation
Indices: 81575402--81575438 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
81575392 ACGTATATAT
81575402 ATAAAATAATA
1 ATAAAATAATA
81575413 ATAAAATAA-A
1 ATAAAATAATA
81575423 ATAAAA-AATA
1 ATAAAATAATA
81575433 AGTAAA
1 A-TAAA
81575439 TATTTAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.08
10 9 0.38
11 13 0.54
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.22
Consensus pattern (11 bp):
ATAAAATAATA
Found at i:81575571 original size:19 final size:19
Alignment explanation
Indices: 81575543--81575582 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
81575533 ATATATGCAT
81575543 ATATAGATAAAATAATTAC
1 ATATAGATAAAATAATTAC
*
81575562 ATATATATAAAATAATTAC
1 ATATAGATAAAATAATTAC
81575581 AT
1 AT
81575583 TATCAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (19 bp):
ATATAGATAAAATAATTAC
Found at i:81579656 original size:22 final size:21
Alignment explanation
Indices: 81579630--81579694 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 21
81579620 ATTAAATTAA
*
81579630 TAAATACTATTAAAATAAGTAT
1 TAAATACTATTAAAATAA-AAT
* *
81579652 TAAATTA-AATTAAATTAAAAT
1 TAAA-TACTATTAAAATAAAAT
*
81579673 TTAA-ACTATTAAAATAAAAT
1 TAAATACTATTAAAATAAAAT
81579693 TA
1 TA
81579695 TTTTTGGAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 1 0.03
20 13 0.38
21 5 0.15
22 13 0.38
23 2 0.06
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (21 bp):
TAAATACTATTAAAATAAAAT
Found at i:81582541 original size:27 final size:27
Alignment explanation
Indices: 81582470--81582543 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
81582460 TTTCATCTCT
*
81582470 ATTTTACCCCTGGTAAAA-TTTTGACA
1 ATTTTACCCTTGGTAAAATTTTTGACA
* * * *
81582496 ATTTTACCCTCGATGAAATTTTTGACG
1 ATTTTACCCTTGGTAAAATTTTTGACA
*
81582523 ATTTTACCTTTGGTAAAATTT
1 ATTTTACCCTTGGTAAAATTT
81582544 CGAGAAAATA
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
26 14 0.37
27 24 0.63
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTGGTAAAATTTTTGACA
Found at i:81594138 original size:16 final size:17
Alignment explanation
Indices: 81594106--81594140 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
81594096 ATTTAATCTT
*
81594106 TATATAACATAACATAA
1 TATATAACATAAAATAA
81594123 TATATAA-ATAAAATAA
1 TATATAACATAAAATAA
81594139 TA
1 TA
81594141 AGTTACATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TATATAACATAAAATAA
Found at i:81598564 original size:30 final size:30
Alignment explanation
Indices: 81598508--81598565 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
81598498 AAAATTTTAG
* *
81598508 AATTTAATTCTTATACTTTTATTTTCAATA
1 AATTTAATTCCTATACTTTTAGTTTCAATA
*
81598538 AATTTAA-TCCTATATTTTTCAGTTTCAA
1 AATTTAATTCCTATACTTTT-AGTTTCAA
81598566 AATTCAAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.33, C:0.12, G:0.02, T:0.53
Consensus pattern (30 bp):
AATTTAATTCCTATACTTTTAGTTTCAATA
Found at i:81599107 original size:15 final size:15
Alignment explanation
Indices: 81599087--81599119 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
81599077 ACATTTCACT
*
81599087 TTTATGTCTTTTGTA
1 TTTATGTCTTTTATA
81599102 TTTATGTCTTTTATA
1 TTTATGTCTTTTATA
81599117 TTT
1 TTT
81599120 TGCATACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.06, G:0.09, T:0.70
Consensus pattern (15 bp):
TTTATGTCTTTTATA
Found at i:81603896 original size:16 final size:17
Alignment explanation
Indices: 81603870--81603913 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 17
81603860 TATATATATC
*
81603870 TATTATAAAAA-ATGTG
1 TATTTTAAAAACATGTG
81603886 TATTTTGAAAAACATGTG
1 TATTTT-AAAAACATGTG
81603904 TATTTTAAAA
1 TATTTTAAAA
81603914 CGTGCATGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 5 0.20
17 9 0.36
18 11 0.44
ACGTcount: A:0.45, C:0.02, G:0.11, T:0.41
Consensus pattern (17 bp):
TATTTTAAAAACATGTG
Found at i:81605111 original size:23 final size:24
Alignment explanation
Indices: 81605079--81605125 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
81605069 GGAGCGACAA
* *
81605079 GTGTGGCGTGTGGGCGCTGTTGCG
1 GTGTGGCGTGTGGGAGCTGCTGCG
81605103 GTGT-GCGTGTGGGAGCTGCTGCG
1 GTGTGGCGTGTGGGAGCTGCTGCG
81605126 CCTAGGGTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.02, C:0.17, G:0.53, T:0.28
Consensus pattern (24 bp):
GTGTGGCGTGTGGGAGCTGCTGCG
Found at i:81615580 original size:48 final size:48
Alignment explanation
Indices: 81615509--81615716 Score: 371
Period size: 48 Copynumber: 4.3 Consensus size: 48
81615499 ATGTACAAGA
*
81615509 GAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
1 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
*
81615557 GAAATATGTATGAGATATGTATATGTGATAAAGCCGAATGGCTAATGT
1 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
81615605 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
1 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
* *
81615653 GAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGT
1 GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
*
81615701 GAAATATGTAGGAGAT
1 GAAATATGTATGAGAT
81615717 GTGTGTATAT
Statistics
Matches: 153, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 153 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
Found at i:81615907 original size:37 final size:37
Alignment explanation
Indices: 81615857--81615959 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
81615847 GGAAATATAT
81615857 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
81615894 TCCGGGTAAGACCCGACGACTACGTGTAGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
81615931 TCCGGGTAAGACCCGATAACTATGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
81615960 GGACTATTCG
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:81616911 original size:9 final size:9
Alignment explanation
Indices: 81616899--81616923 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
81616889 CATGTGATAA
81616899 ATGTGATTT
1 ATGTGATTT
81616908 ATGTGATTT
1 ATGTGATTT
81616917 ATGTGAT
1 ATGTGAT
81616924 CTGGGTGCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (9 bp):
ATGTGATTT
Done.