Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 236 of 290
Found at i:81617808 original size:25 final size:26
Alignment explanation
Indices: 81617754--81617808 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
81617744 TTTCATATTT
81617754 TATAATAAGGTTAAATATGTAATTAA
1 TATAATAAGGTTAAATATGTAATTAA
* *
81617780 -ATAAT-ATGTTAATATATGTTA-TAA
1 TATAATAAGGTTAA-ATATGTAATTAA
81617804 TATAA
1 TATAA
81617809 CATAAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (26 bp):
TATAATAAGGTTAAATATGTAATTAA
Found at i:81618764 original size:43 final size:45
Alignment explanation
Indices: 81618670--81618870 Score: 152
Period size: 43 Copynumber: 4.6 Consensus size: 45
81618660 TGTGTTTTCG
* * * * *
81618670 GTGTCAGACCACATCTGGGACGTTGGCATCGATATATGTGTTTTC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATATGTGGTTAC
81618715 GTGTAAGACCACGTCTGGGACATTGGCATC-A-ATATGTGGTTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATATGTGGTTAC
* * * *
81618758 -TAGTAAGACCATGTCTGAGACATCGGCATCG-TAT-T-TGATT-C
1 GT-GTAAGACCACGTCTGGGACATTGGCATCGATATATGTGGTTAC
* * * * * *
81618799 GTGTAAGACC-CTATCTGGGACAGTGGCATTG--ATATGAGATAAC
1 GTGTAAGACCAC-GTCTGGGACATTGGCATCGATATATGTGGTTAC
* **
81618842 ATGTAAGACCACGTCTGGGATGTTGGCAT
1 GTGTAAGACCACGTCTGGGACATTGGCAT
81618871 TGTATGATAT
Statistics
Matches: 125, Mismatches: 22, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
40 2 0.02
41 24 0.19
42 9 0.07
43 59 0.47
44 4 0.03
45 27 0.22
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (45 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGATATATGTGGTTAC
Found at i:81618870 original size:84 final size:87
Alignment explanation
Indices: 81618675--81618875 Score: 205
Period size: 84 Copynumber: 2.3 Consensus size: 87
81618665 TTTCGGTGTC
* * * *
81618675 AGACCACATCTGGGACGTTGGCATCGATATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTG
1 AGACCACGTCTGGGACGTTGGCATCG-TATATGTGTATTCGTGTAAGACCACATCTGGGACAGTG
* * *
81618740 GCATCAATATGTGGTTACTAGTA
65 GCATCAATATGAGATAACTAGTA
* * * *
81618763 AGACCATGTCTGAGACATCGGCATCGTAT-T-TG-ATTCGTGTAAGACC-CTATCTGGGACAGTG
1 AGACCACGTCTGGGACGTTGGCATCGTATATGTGTATTCGTGTAAGACCAC-ATCTGGGACAGTG
**
81618824 GCATTGATATGAGATAAC-ATGTA
65 GCATCAATATGAGATAACTA-GTA
* *
81618847 AGACCACGTCTGGGATGTTGGCATTGTAT
1 AGACCACGTCTGGGACGTTGGCATCGTAT
81618876 GATATATGTG
Statistics
Matches: 92, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
83 2 0.02
84 63 0.68
85 2 0.02
86 1 0.01
87 3 0.03
88 21 0.23
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (87 bp):
AGACCACGTCTGGGACGTTGGCATCGTATATGTGTATTCGTGTAAGACCACATCTGGGACAGTGG
CATCAATATGAGATAACTAGTA
Found at i:81620987 original size:39 final size:39
Alignment explanation
Indices: 81620944--81621119 Score: 298
Period size: 39 Copynumber: 4.5 Consensus size: 39
81620934 CCGGACATAT
*
81620944 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGTTATAA
*
81620983 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGTTATAA
* *
81621022 TTCCAGCGCATAGCCTGCGGACCTTAAGTCCAGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGTTATAA
*
81621061 TTCCAGCATATAGCCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGTTATAA
*
81621100 TTCCAGCATATAGCCTGCGG
1 TTCCAGCACATAGCCTGCGG
81621120 GTCTTTAAGC
Statistics
Matches: 129, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 129 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGTTATAA
Found at i:81620989 original size:78 final size:78
Alignment explanation
Indices: 81620916--81621119 Score: 275
Period size: 78 Copynumber: 2.6 Consensus size: 78
81620906 ACCAGCTCGA
* * * *
81620916 AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTA
1 AGCCTGC-GGACCTTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCAGTTA
81620980 TAATTCCAGCACAT
65 TAATTCCAGCACAT
* ** *
81620994 AGCCTGCGGACCTTAAGTCCGGGTATAATTCCAGCGCATAGCCTGCGGACCTTAAGTCCAGTTAT
1 AGCCTGCGGACCTTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCAGTTAT
*
81621059 AATTCCAGCATAT
66 AATTCCAGCACAT
* ** *
81621072 AGCCTGCGGACCTTAAGTCCGGTTATAATTCCAGCATATAGCCTGCGG
1 AGCCTGCGGACCTTAAGCCCGGACATAATTCCAGCACATAGCCTGCGG
81621120 GTCTTTAAGC
Statistics
Matches: 113, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
77 3 0.03
78 110 0.97
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (78 bp):
AGCCTGCGGACCTTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCAGTTAT
AATTCCAGCACAT
Found at i:81632872 original size:21 final size:20
Alignment explanation
Indices: 81632848--81632889 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
81632838 AAACTTGTTT
*
81632848 ATCTATCAACAAGCATTCAAA
1 ATCTATCAACAAACA-TCAAA
*
81632869 ATCTATCATCAAACATCAAA
1 ATCTATCAACAAACATCAAA
81632889 A
1 A
81632890 CACACATGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.50, C:0.24, G:0.02, T:0.24
Consensus pattern (20 bp):
ATCTATCAACAAACATCAAA
Found at i:81643033 original size:48 final size:48
Alignment explanation
Indices: 81642991--81643214 Score: 216
Period size: 48 Copynumber: 4.6 Consensus size: 48
81642981 CATATTAGTG
* * *
81642991 CCGATGTCGTGTCCCAGACATGGTCTTACACTAGCACACATATC-ATCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAAT-A
* *
81643039 CCGATGCCATGTCCCAGACATGGTCCTACACTGGCACACATATCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAATA
** * * * *
81643087 TTGATGCCATGTTCCAGACATGGTCTTATATTGGCACACATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAATA
** * * * * * * *
81643135 TTGATGACATGTCCCAGACATGGTCTTACACTTGCTCTCATCTCGCATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATC-AATA
* * *
81643184 TCGATGTCATGTCCTAGACATGGTCTTACAC
1 CCGATGCCATGTCCCAGACATGGTCTTACAC
81643215 GGGATCTCAC
Statistics
Matches: 147, Mismatches: 27, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
48 116 0.79
49 31 0.21
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAATA
Found at i:81643081 original size:96 final size:96
Alignment explanation
Indices: 81642989--81643214 Score: 254
Period size: 96 Copynumber: 2.3 Consensus size: 96
81642979 CTCATATTAG
* * * *
81642989 TGCCGATGTCGTGTCCCAGACATGGTCTTACACTAGCACACATATCATCACCGATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATGACATGTCCC
81643054 AGACATGGTCCTACACTGGCACACATATCAA
66 AGACATGGTCCTACACTGGCACACATATCAA
** * * * * **
81643085 TGTTGATGCCATGTTCCAGACATGGTCTTATATTGGCACACATATCAACATTGATGACATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATGACATGTCCC
* * * * * *
81643150 AGACATGGTCTTACACTTGCTCTCATCTCGCA
66 AGACATGGTCCTACACTGGCACACATATC-AA
* * *
81643182 TGTCGATGTCATGTCCTAGACATGGTCTTACAC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACAC
81643215 GGGATCTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
96 77 0.73
97 28 0.27
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCGATGACATGTCCC
AGACATGGTCCTACACTGGCACACATATCAA
Found at i:81643651 original size:3 final size:3
Alignment explanation
Indices: 81643643--81643683 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
81643633 ATGACATTGC
81643643 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
81643684 CACATGAACT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:81649870 original size:39 final size:39
Alignment explanation
Indices: 81649816--81649892 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
81649806 CAAGACACTA
*
81649816 GAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
81649855 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
81649893 AGTAATATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
Found at i:81651789 original size:23 final size:23
Alignment explanation
Indices: 81651759--81651804 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
81651749 GAACCGCTCA
81651759 TTCATCATTTGGAAGAAAGCTTG
1 TTCATCATTTGGAAGAAAGCTTG
*
81651782 TTCATCATTTGGAAGAAGGCTTG
1 TTCATCATTTGGAAGAAAGCTTG
81651805 CTTAGCCTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (23 bp):
TTCATCATTTGGAAGAAAGCTTG
Found at i:81655384 original size:12 final size:13
Alignment explanation
Indices: 81655367--81655404 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
81655357 ATCCTAGAAT
81655367 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
81655379 ATTAAGAACACATA
1 ATTAAGAACA-AGA
81655393 ATTAAGAACAAG
1 ATTAAGAACAAG
81655405 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:81659179 original size:40 final size:39
Alignment explanation
Indices: 81659110--81659185 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 39
81659100 ACAGTAGCAA
*
81659110 TATCAGTATGGGCCTTAGCCTACTACAGTAGTAGTATCAG
1 TATCAGTATGGGCCTTAGCCAACTACAGTA-TAGTATCAG
* *
81659150 TATCAGTCTGGGCCTTTGCCCAACT-CAGTATAGTAT
1 TATCAGTATGGGCCTTAG-CCAACTACAGTATAGTAT
81659186 AAGAAATGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 6 0.19
40 21 0.66
41 5 0.16
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (39 bp):
TATCAGTATGGGCCTTAGCCAACTACAGTATAGTATCAG
Found at i:81663145 original size:29 final size:30
Alignment explanation
Indices: 81663110--81663169 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
81663100 TCCTTAACTC
81663110 AAACTTTT-CAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
81663139 AAACTTTTGCAAATTTACACTTTTTCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
81663169 A
1 A
81663170 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 8 0.30
30 19 0.70
ACGTcount: A:0.32, C:0.25, G:0.03, T:0.40
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:81665842 original size:30 final size:30
Alignment explanation
Indices: 81665808--81665868 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
81665798 TCATTAACTC
81665808 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
81665838 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
81665868 A
1 A
81665869 GGTTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:81666856 original size:56 final size:56
Alignment explanation
Indices: 81666770--81666889 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
81666760 ACAAGGGATG
81666770 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
81666826 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
81666882 ATGGGCAA
1 ATGGGCAA
81666890 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:81668415 original size:49 final size:47
Alignment explanation
Indices: 81668336--81668744 Score: 590
Period size: 47 Copynumber: 8.6 Consensus size: 47
81668326 TATTTGAATA
* *
81668336 AATGTTAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
81668383 AATGTGAAAGTGTATATATATGCGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
81668432 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
81668481 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
81668528 AATGTGAAAGTGTATATATATGTGATAATGG-CGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAA-GGCCGAATGGCCAATGTGATG
* *
81668577 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
81668624 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
81668671 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
81668718 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
81668745 TCCCGAAGGG
Statistics
Matches: 341, Mismatches: 13, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
46 3 0.01
47 200 0.59
49 135 0.40
50 3 0.01
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:81668443 original size:96 final size:94
Alignment explanation
Indices: 81668336--81668744 Score: 590
Period size: 96 Copynumber: 4.3 Consensus size: 94
81668326 TATTTGAATA
* *
81668336 AATGTTAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* * *
81668401 TATGCGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
81668432 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
81668497 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
81668528 AATGTGAAAGTGTATATATATGTGATAATGG-CGAATGGCCAATGTGATGAATGTGAACA-TGCA
1 AATGTGAAAGTG--TATATATGTGATAA-GGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTA
*
81668591 TATATGAGATAAGGCCGAATGGCCAATGTGATG
62 TATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
81668624 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
81668688 ATGTGATAAGGCCGAATGGCCAATGTGATG
65 ATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
81668718 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
81668745 TCCCGAAGGG
Statistics
Matches: 287, Mismatches: 18, Indels: 18
0.89 0.06 0.06
Matches are distributed among these distances:
93 4 0.01
94 93 0.32
96 140 0.49
97 4 0.01
98 46 0.16
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:81681557 original size:19 final size:20
Alignment explanation
Indices: 81681533--81681570 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81681523 GGTACCACCA
81681533 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
81681552 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
81681571 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:81681915 original size:93 final size:93
Alignment explanation
Indices: 81681800--81681970 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
81681790 GCCCTTAAGT
* *
81681800 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
81681864 ACGAGTTTGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
81681893 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
81681958 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81681971 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81681964 original size:46 final size:46
Alignment explanation
Indices: 81681795--81681967 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
81681785 AACCCGCCCT
* *
81681795 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCA
* * *
81681841 TAAATGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
81681889 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
81681934 TAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81681968 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 57 0.54
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:81682424 original size:30 final size:30
Alignment explanation
Indices: 81682390--81682449 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
81682380 ATTTAATACG
81682390 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
81682420 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
81682450 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:81687550 original size:19 final size:20
Alignment explanation
Indices: 81687526--81687572 Score: 80
Period size: 19 Copynumber: 2.5 Consensus size: 20
81687516 TTTTGAGTAT
81687526 GAGCTTACTAAGCTTTT-AA
1 GAGCTTACTAAGCTTTTGAA
81687545 GAGCTTACTAAGCTTTTGAA
1 GAGCTTACTAAGCTTTTGAA
81687565 -AGCTTACT
1 GAGCTTACT
81687573 CTGTGTGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 25 0.93
20 2 0.07
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (20 bp):
GAGCTTACTAAGCTTTTGAA
Found at i:81687931 original size:73 final size:73
Alignment explanation
Indices: 81687834--81688712 Score: 1740
Period size: 73 Copynumber: 12.0 Consensus size: 73
81687824 GGCATGTCTT
* *
81687834 AATTGGATTGGGAAGAAGGTAAGTTTGGTGAGTTCATGGTATGAGAATGAATGATGTATGTTTTA
1 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
81687899 GCATAAAG
66 GCATAAAG
81687907 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
1 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
81687972 GCATAAAG
66 GCATAAAG
81687980 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
1 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
81688045 GCATAAAG
66 GCATAAAG
81688053 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
1 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
81688118 GCATAAAG
66 GCATAAAG
81688126 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
1 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
81688191 GCATAAAG
66 GCATAAAG
81688199 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
1 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
81688264 GCATAAAG
66 GCATAAAG
81688272 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
1 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
81688337 GCATAAAG
66 GCATAAAG
81688345 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
1 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
81688410 GCATAAAG
66 GCATAAAG
81688418 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
1 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
81688483 GCATAAAG
66 GCATAAAG
81688491 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
1 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
81688556 GCATAAAG
66 GCATAAAG
81688564 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
1 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
81688629 GCATAAAG
66 GCATAAAG
81688637 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
1 AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
81688702 GCATAAAG
66 GCATAAAG
81688710 AAT
1 AAT
81688713 GGTTAATTGG
Statistics
Matches: 804, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 804 1.00
ACGTcount: A:0.32, C:0.03, G:0.34, T:0.32
Consensus pattern (73 bp):
AATTGGATTGGGAAGAAGGGAAGTTTGGTGAGTTCATGGTATGAGAATGAGTGATGTATGTTTTA
GCATAAAG
Found at i:81699472 original size:27 final size:27
Alignment explanation
Indices: 81699434--81699777 Score: 307
Period size: 27 Copynumber: 12.7 Consensus size: 27
81699424 TGTAAGCTAG
* * **
81699434 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
81699461 AATTACCAAAATACCCTCGATTAGCAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
81699488 AGTTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
*
81699515 AATTACCAAAATACCCCTGATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
81699542 AATTACCGAAATACCCTTGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
81699569 TATTACCAAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
** * *
81699596 AATTACTGAAATACCATCGATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
81699623 AATTACCAAAATACCCCTAATTTGGAA
1 AATTACCAAAATACCCTTGATTTGTAA
** *
81699650 AATTACTTAAATACCCTTGATTTGGAA
1 AATTACCAAAATACCCTTGATTTGTAA
* **
81699677 AATTA-TAGAAATACCCTTGACTTTCAAA
1 AATTACCA-AAATACCCTTGA-TTTGTAA
* * *
81699705 AATTA-CAGAAATACCATTGGTTTGAAA
1 AATTACCA-AAATACCCTTGATTTGTAA
* * *
81699732 AATTACCGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGATTTGTAA
* *
81699759 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
81699778 TAGGGTGAAA
Statistics
Matches: 265, Mismatches: 47, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
26 2 0.01
27 239 0.90
28 24 0.09
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:81700059 original size:41 final size:41
Alignment explanation
Indices: 81700012--81700124 Score: 138
Period size: 41 Copynumber: 2.8 Consensus size: 41
81700002 ACGGAGGAAG
* *
81700012 AAATTGAGGATCGCATGGTTGCTTGATGACCATGGATCCATC
1 AAATTGAGGATCGCATGGTTGCTTGACGACCATGGATACA-C
* * * * *
81700054 -GATTGAGAATCGCATGGTTCCTTGACGATCGTGGATACAC
1 AAATTGAGGATCGCATGGTTGCTTGACGACCATGGATACAC
*
81700094 AAATTAAGGATCGCATGGTTGCTTGACGACC
1 AAATTGAGGATCGCATGGTTGCTTGACGACC
81700125 GAAGATCCAC
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
40 1 0.02
41 57 0.98
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (41 bp):
AAATTGAGGATCGCATGGTTGCTTGACGACCATGGATACAC
Found at i:81700329 original size:22 final size:22
Alignment explanation
Indices: 81700277--81700341 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
81700267 GCCAATTATT
* *
81700277 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
81700299 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
81700321 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
81700342 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:81707170 original size:22 final size:22
Alignment explanation
Indices: 81707127--81707170 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
81707117 AGCACCAACT
* ** *
81707127 TTGCTGCCGTACATTGTTGTTG
1 TTGCTGCCATACATCATCGTTG
81707149 TTGCTGCCATACATCATCGTTG
1 TTGCTGCCATACATCATCGTTG
81707171 CTGTCGCACA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.23, G:0.23, T:0.41
Consensus pattern (22 bp):
TTGCTGCCATACATCATCGTTG
Found at i:81713908 original size:43 final size:43
Alignment explanation
Indices: 81713860--81714167 Score: 517
Period size: 43 Copynumber: 7.2 Consensus size: 43
81713850 GCATGAAACT
81713860 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCTTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCTTGC
81713903 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCTTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCTTGC
81713946 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCTTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCTTGC
81713989 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCTTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCTTGC
*
81714032 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCTTGC
* * * * *
81714075 CAGTGATGTGTATTCGAGCCTTCGTGCATTGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCTTGC
* * * **
81714118 AGGTGATGTGTATTCGGGTCTTCGTACCTAGCAGGCTTAATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCTTGC
81714161 CGGTGAT
1 CGGTGAT
81714168 TCGAGCAAGG
Statistics
Matches: 250, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 250 1.00
ACGTcount: A:0.11, C:0.24, G:0.32, T:0.32
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCTTGC
Found at i:81714357 original size:29 final size:29
Alignment explanation
Indices: 81714324--81714423 Score: 89
Period size: 29 Copynumber: 3.4 Consensus size: 29
81714314 ATGATTAGAG
81714324 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTGTGTGTGCAAATTCCTTTAACCGA
* ** **
81714353 GCACTATGTGTGTG-AGA-T-CGGTAATTGA
1 GCAC--TGTGTGTGCAAATTCCTTTAACCGA
*
81714381 GGCACTGTGTGTGAAAATTCCTTTAACCGA
1 -GCACTGTGTGTGCAAATTCCTTTAACCGA
*
81714411 GCACTATGTGTGC
1 GCACTGTGTGTGC
81714424 GAGATTGGTA
Statistics
Matches: 53, Mismatches: 12, Indels: 12
0.69 0.16 0.16
Matches are distributed among these distances:
27 8 0.15
28 8 0.15
29 21 0.40
30 8 0.15
31 8 0.15
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (29 bp):
GCACTGTGTGTGCAAATTCCTTTAACCGA
Found at i:81714389 original size:58 final size:58
Alignment explanation
Indices: 81714321--81714489 Score: 270
Period size: 58 Copynumber: 2.9 Consensus size: 58
81714311 CGAATGATTA
*
81714321 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGTGAGATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* *
81714379 GAGGCACTGTGTGTGAAAATTCCTTTAACCGAGCACTATGTGTGCGAGATTGGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* *
81714437 GAGGCACTGTGTGTGCGAGTT--TTTCAACCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCAAATTCCTTT-AACCGAGCACTATGTGTGCGAGATCGGT
81714490 TAGTGGGCAC
Statistics
Matches: 103, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
56 3 0.03
57 27 0.26
58 73 0.71
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:81714443 original size:29 final size:29
Alignment explanation
Indices: 81714353--81714507 Score: 86
Period size: 29 Copynumber: 5.4 Consensus size: 29
81714343 CTTTAACCGA
* * *
81714353 GCACTATGTGTGTGAGATCGGTAATTGAG
1 GCACTATGTGTGCGAGATTGGTAACTGAG
* * * ** *
81714382 GCACTGTGTGTG-AAAATTCCTTTAACCGA-
1 GCACTATGTGTGCGAGATT--GGTAACTGAG
*
81714411 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTGGTAACTGAG
* ** *
81714440 GCACTGTGTGTGCGAG-TTTTTCAACCGA-
1 GCACTATGTGTGCGAGATTGGT-AACTGAG
* * *
81714468 GCACTATGTGTGCGAGATCGGTTAGTG-G
1 GCACTATGTGTGCGAGATTGGTAACTGAG
*
81714496 GCACTAAGTGTG
1 GCACTATGTGTG
81714508 TGAAATGAGA
Statistics
Matches: 91, Mismatches: 28, Indels: 15
0.68 0.21 0.11
Matches are distributed among these distances:
28 39 0.43
29 43 0.47
30 9 0.10
ACGTcount: A:0.23, C:0.15, G:0.32, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTGGTAACTGAG
Found at i:81714478 original size:28 final size:28
Alignment explanation
Indices: 81714346--81714485 Score: 95
Period size: 29 Copynumber: 4.9 Consensus size: 28
81714336 CAAATTCCTT
* *
81714346 TAACCGAGCACTATGTGTGTGAGATCGG
1 TAACCGAGCACTATGTGTGCGAGATTGG
** * * * **
81714374 TAATTGAGGCACTGTGTGTG-AAAATTCCTT
1 TAACCGA-GCACTATGTGTGCGAGATT--GG
81714404 TAACCGAGCACTATGTGTGCGAGATTGG
1 TAACCGAGCACTATGTGTGCGAGATTGG
** * **
81714432 TAATTGAGGCACTGTGTGTGCGAG-TTTT
1 TAACCGA-GCACTATGTGTGCGAGATTGG
81714460 TCAACCGAGCACTATGTGTGCGAGAT
1 T-AACCGAGCACTATGTGTGCGAGAT
81714486 CGGTTAGTGG
Statistics
Matches: 82, Mismatches: 23, Indels: 13
0.69 0.19 0.11
Matches are distributed among these distances:
28 31 0.38
29 42 0.51
30 9 0.11
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.30
Consensus pattern (28 bp):
TAACCGAGCACTATGTGTGCGAGATTGG
Found at i:81714507 original size:58 final size:57
Alignment explanation
Indices: 81714321--81714512 Score: 253
Period size: 58 Copynumber: 3.3 Consensus size: 57
81714311 CGAATGATTA
* *
81714321 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGTGAGATCGGTAATT
1 GAGGCACTGTGTGTGAAAATT-CTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
*
81714379 GAGGCACTGTGTGTGAAAATTCCTTTAACCGAGCACTATGTGTGCGAGATTGGTAATT
1 GAGGCACTGTGTGTGAAAATT-CTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
** * * *
81714437 GAGGCACTGTGTGTGCGAGTT-TTTCAACCGAGCACTATGTGTGCGAGATCGGTTAGT
1 GAGGCACTGTGTGTGAAAATTCTTT-AACCGAGCACTATGTGTGCGAGATCGGTAATT
81714494 G-GGCACTAAGTGTGTGAAA
1 GAGGCACT--GTGTGTGAAA
81714513 TGAGATTCAT
Statistics
Matches: 120, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
56 9 0.08
57 30 0.25
58 81 0.68
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (57 bp):
GAGGCACTGTGTGTGAAAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:81716046 original size:12 final size:13
Alignment explanation
Indices: 81716012--81716051 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
81716002 TTTTTTTAAG
81716012 TAGTTTATTGATA
1 TAGTTTATTGATA
81716025 TAGTCATTATT-ATA
1 TAGT--TTATTGATA
81716039 TAGTTTATTGATA
1 TAGTTTATTGATA
81716052 AAAATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 5 0.21
13 7 0.29
14 7 0.29
15 5 0.21
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.53
Consensus pattern (13 bp):
TAGTTTATTGATA
Found at i:81720479 original size:46 final size:44
Alignment explanation
Indices: 81720381--81720493 Score: 145
Period size: 46 Copynumber: 2.5 Consensus size: 44
81720371 GTGCTGATGT
* *
81720381 CATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCAGATG
1 CATGTCCCAGACAT-GTCTTACACTGACACATCTCGAAGCAGACG
* ** *
81720426 CATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAAGCCGACG
1 CATGTCCCAGACATGTCTTACACTGAC--ACATCTCGAAGCAGACG
81720472 CATGTCCCAGACATGTCTTACA
1 CATGTCCCAGACATGTCTTACA
81720494 GTAGCAATCG
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
44 12 0.20
45 14 0.23
46 34 0.57
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACATCTCGAAGCAGACG
Found at i:81720515 original size:46 final size:46
Alignment explanation
Indices: 81720381--81720506 Score: 127
Period size: 46 Copynumber: 2.8 Consensus size: 46
81720371 GTGCTGATGT
* * *
81720381 CATGTCCCAGACATGGTCTTACACT-GAC-ACA--TCTCGTAGCAGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CTA-ATGTCTCGAAGCCGACG
* *
81720426 CATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAAGCCGACG
1 CATGTCCCAGACATGTCTTACACTAGCTAATGTCTCGAAGCCGACG
*
81720472 CATGTCCCAGACATGTCTTACAGTAGC-AATCGTCT
1 CATGTCCCAGACATGTCTTACACTAGCTAAT-GTCT
81720507 TAATGCCGAT
Statistics
Matches: 69, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
44 12 0.17
45 17 0.25
46 40 0.58
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTAATGTCTCGAAGCCGACG
Found at i:81723692 original size:29 final size:29
Alignment explanation
Indices: 81723596--81723710 Score: 114
Period size: 29 Copynumber: 4.0 Consensus size: 29
81723586 TACCTGTATC
* * *
81723596 TGGCCCATTAAGCTC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
81723624 TGGCCCATTATGCCCAAATCATC-TGT-ATA
1 TGGCCCATTAGGCCCAAATCA-CAT-TCATA
*
81723653 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
81723682 TGG-CCAGTTAGGCCC-AGTCACATTCATA
1 TGGCCCA-TTAGGCCCAAATCACATTCATA
81723710 T
1 T
81723711 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
28 30 0.40
29 44 0.59
30 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:81723697 original size:58 final size:57
Alignment explanation
Indices: 81723589--81723697 Score: 139
Period size: 57 Copynumber: 1.9 Consensus size: 57
81723579 ATTCAGATAC
* * * *
81723589 CTGTATCTGGCCCATTAAGCTCAATCATATTCATATGGCCCATTATGCCCAAATCAT
1 CTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCAT
* *
81723646 CTGTATATGGCCCATTAGGCCCAAATCACATTTATATGG-CCAGTTAGGCCCA
1 CTGTATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCA-TTAGGCCCA
81723698 GTCACATTCA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
57 22 0.50
58 22 0.50
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (57 bp):
CTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCAT
Found at i:81740981 original size:28 final size:28
Alignment explanation
Indices: 81740937--81741051 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 28
81740927 TACCTATATC
*
81740937 TGGCCCATTAAGG-CCAATCATATTCATA
1 TGGCCCATT-AGGCCCAATCACATTCATA
*
81740965 TGGCCCATTAGGCCCAAATCACCTAT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
* *
81740994 TGACCCATTAGGCCCAACTCACATTTATA
1 TGGCCCATTAGGCCCAA-TCACATTCATA
**
81741023 TGGCCTGTTAGGCCCAATCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
81741051 T
1 T
81741052 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
27 3 0.04
28 25 0.34
29 45 0.61
30 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:81740992 original size:57 final size:57
Alignment explanation
Indices: 81740928--81741043 Score: 146
Period size: 57 Copynumber: 2.0 Consensus size: 57
81740918 AAATTCACAT
* * *
81740928 ACCTATATCTGGCCCATTAAGG-CCAA-TCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGACCCATT-AGGCCCAACTCACATTCATATGGCCCATTAGGCCC-AATC
* **
81740985 ACCTATATATGACCCATTAGGCCCAACTCACATTTATATGGCCTGTTAGGCCCAATC
1 ACCTATATATGACCCATTAGGCCCAACTCACATTCATATGGCCCATTAGGCCCAATC
81741042 AC
1 AC
81741044 ATTCATATTC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
56 3 0.06
57 26 0.51
58 22 0.43
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (57 bp):
ACCTATATATGACCCATTAGGCCCAACTCACATTCATATGGCCCATTAGGCCCAATC
Found at i:81742567 original size:16 final size:16
Alignment explanation
Indices: 81742546--81742579 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81742536 AGAAAATTCA
*
81742546 AGATTTTAGGATTTTT
1 AGATTTCAGGATTTTT
*
81742562 AGATTTCGGGATTTTT
1 AGATTTCAGGATTTTT
81742578 AG
1 AG
81742580 GGCGTTACAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.03, G:0.24, T:0.50
Consensus pattern (16 bp):
AGATTTCAGGATTTTT
Found at i:81749798 original size:47 final size:47
Alignment explanation
Indices: 81749747--81749971 Score: 308
Period size: 47 Copynumber: 4.7 Consensus size: 47
81749737 TTAGGATTCT
* *
81749747 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
81749794 ATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
81749841 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * * * * *
81749890 ATGTGATGAATGCGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
81749937 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
81749972 TCCCGAAGGG
Statistics
Matches: 159, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
47 113 0.71
49 46 0.29
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:81749877 original size:96 final size:96
Alignment explanation
Indices: 81749768--81749971 Score: 313
Period size: 96 Copynumber: 2.1 Consensus size: 96
81749758 GTGAACATGC
* * * *
81749768 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATATATGTGACAAGGCCG
* *
81749833 AATGGCCGATGTGATGAATGTGAAAGTGTAT
66 AATGGCCAACGTGATGAATGTGAAAGTGTAT
*
81749864 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATATATGTGACAGGGCCG
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATATATGTGACAAGGCCG
* *
81749929 AGTGGCCAACGTGATGGATGTGAAAGTGTAT
66 AATGGCCAACGTGATGAATGTGAAAGTGTAT
81749960 A-A-ATGTGATAAG
1 ATATATGTGATAAG
81749972 TCCCGAAGGG
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
94 10 0.10
95 1 0.01
96 88 0.89
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (96 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATATATGTGACAAGGCCG
AATGGCCAACGTGATGAATGTGAAAGTGTAT
Found at i:81750164 original size:37 final size:37
Alignment explanation
Indices: 81750090--81750168 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
81750080 CCGAGCTCTA
* * * *
81750090 AAGACCCGATGACTACGTGTGGGAATTTTGTCTGGGT
1 AAGACCCGATAACTACGTGTGGGAATTATGCCCGGGT
*
81750127 AAGACCCGATAACTTCGTGT-GGAGATTATGCCCGGGT
1 AAGACCCGATAACTACGTGTGGGA-ATTATGCCCGGGT
81750164 AAGAC
1 AAGAC
81750169 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
36 3 0.08
37 33 0.92
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGGAATTATGCCCGGGT
Found at i:81752082 original size:43 final size:43
Alignment explanation
Indices: 81752034--81752136 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
81752024 TTGGTTTTCA
*
81752034 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGATTGTGAGATTG
81752077 GCACTAAGTGTGCGGGCAATAAGTGTTCACGATTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGATTGTGAGATTG
81752120 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
81752137 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGATTGTGAGATTG
Found at i:81752153 original size:29 final size:29
Alignment explanation
Indices: 81752118--81752191 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
81752108 ATTGTGAGAT
* *
81752118 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
81752147 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
81752176 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81752192 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:81752561 original size:40 final size:40
Alignment explanation
Indices: 81752504--81752713 Score: 280
Period size: 40 Copynumber: 5.2 Consensus size: 40
81752494 TTGAATGATG
* *
81752504 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * *
81752544 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
81752584 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
81752624 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* * *
81752664 TCCGGGCTAAGTTCCGAAGAGCATCCGTGCTAGTAATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
81752704 TCCGTGCTAA
1 TCCGGGCTAA
81752714 ACCTCGAAGA
Statistics
Matches: 152, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
40 138 0.91
41 7 0.05
42 7 0.05
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:81756319 original size:47 final size:47
Alignment explanation
Indices: 81756261--81756514 Score: 382
Period size: 47 Copynumber: 5.4 Consensus size: 47
81756251 CAGCCAAGAC
**
81756261 AGTGTATATATGTGATAAGGCCTAACAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
81756308 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
81756355 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
81756402 AGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
81756449 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
81756496 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
81756515 TCCCGAAGGG
Statistics
Matches: 190, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 190 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:81756689 original size:37 final size:37
Alignment explanation
Indices: 81756633--81756711 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
81756623 CCGAGCTCTA
** *
81756633 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGACAACTACGTGTGGAG-ATTATGTCCGGGT
*
81756670 AAGACCCGACAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGACAACTACGTGTGGAGATTATGTCCGGGT
81756707 AAGAC
1 AAGAC
81756712 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (37 bp):
AAGACCCGACAACTACGTGTGGAGATTATGTCCGGGT
Found at i:81758625 original size:43 final size:43
Alignment explanation
Indices: 81758577--81758722 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
81758567 TTGGTTTTCA
81758577 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
81758620 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
81758663 GCACTAAGTGTGCAGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
81758706 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
81758723 TTGAAATGCA
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:81758739 original size:29 final size:29
Alignment explanation
Indices: 81758704--81758777 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
81758694 GTTGTGAGAT
* *
81758704 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
81758733 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
81758762 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81758778 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:81759214 original size:40 final size:40
Alignment explanation
Indices: 81759167--81759323 Score: 233
Period size: 40 Copynumber: 3.9 Consensus size: 40
81759157 GAGTTACTAA
*
81759167 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
81759207 ATACGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
81759247 ATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
81759287 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTAGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
81759324 CGTGTATTCG
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:81759225 original size:80 final size:80
Alignment explanation
Indices: 81759088--81759323 Score: 210
Period size: 80 Copynumber: 3.0 Consensus size: 80
81759078 TCGAATGATG
** * * * *
81759088 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGCGA-TATATACGGGCTAA-ATCCCGAAGAGC
** *
81759149 ATTGGTGCGAGTTACTAAA
63 ATTCATGCGAGTGA-TAAA
* *
81759168 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATACGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATACGGGCTAAATCCCGAAGAGCATT
* **
81759233 CATGCTAGTGATGTA
66 CATGCGAGTGATAAA
* * * * * * *
81759248 TCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAATCCCGAAGAGCAAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATACGGGCTAAATCCCGAAGAGCATT
*
81759313 CATGCTAGTGA
66 CATGCGAGTGA
81759324 CGTGTATTCG
Statistics
Matches: 129, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
79 1 0.01
80 104 0.81
81 18 0.14
82 6 0.05
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATACGGGCTAAATCCCGAAGAGCATT
CATGCGAGTGATAAA
Found at i:81759303 original size:120 final size:120
Alignment explanation
Indices: 81759090--81759320 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 120
81759080 GAATGATGTC
** *
81759090 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTGGT
1 CGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTCGT
* * *
81759155 GCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATA
66 GCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTATA
** * * *
81759210 CGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAGTTCTGAAGAGCATT
1 CGGGCTAAGTCCCGAAG-GC-TTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCATT
* * *
81759273 CGTGCTAGTGA-TATATCCGTGCTAAATCCCGAAGAGCAATCATGCTAG
63 CGTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAG
81759321 TGACGTGTAT
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
120 68 0.72
121 20 0.21
122 6 0.06
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (120 bp):
CGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTCGT
GCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTATA
Found at i:81759515 original size:25 final size:25
Alignment explanation
Indices: 81759486--81759537 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
81759476 TGTGTATTAA
81759486 TGAATGAATAAGA-GCACTATGTATG
1 TGAAT-AATAAGAGGCACTATGTATG
* * *
81759511 TGAATAATTAGAGGCACTGTGTGTG
1 TGAATAATAAGAGGCACTATGTATG
81759536 TG
1 TG
81759538 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (25 bp):
TGAATAATAAGAGGCACTATGTATG
Found at i:81770646 original size:46 final size:44
Alignment explanation
Indices: 81770587--81770701 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
81770577 ACAGGACAGA
* *
81770587 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
81770633 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
81770677 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
81770702 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:81770682 original size:44 final size:45
Alignment explanation
Indices: 81770587--81770720 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
81770577 ACAGGACAGA
* *
81770587 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
81770633 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
81770677 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
81770721 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:81783968 original size:37 final size:37
Alignment explanation
Indices: 81783918--81783996 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
81783908 TTATTACGAA
* *
81783918 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
81783955 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
81783992 GTCTT
1 GTCTT
81783997 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:81784432 original size:49 final size:49
Alignment explanation
Indices: 81784115--81785233 Score: 2037
Period size: 49 Copynumber: 23.1 Consensus size: 49
81784105 CCCTTCAGGA
* * * * * * *
81784115 CTTATCACAT-T-TATGCACTTTCACATCCATCACGTTGGCCACTCGAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81784162 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784209 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81784256 CTTATTAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81784303 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81784350 CTTATCAC--ACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784397 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784446 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784495 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784544 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784593 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784642 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784691 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784740 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784789 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784838 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784887 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784936 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81784985 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81785034 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81785083 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81785132 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81785181 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81785230 CTTA
1 CTTA
81785234 CTATCATTTC
Statistics
Matches: 1051, Mismatches: 17, Indels: 6
0.98 0.02 0.01
Matches are distributed among these distances:
46 1 0.00
47 224 0.21
49 826 0.79
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81788612 original size:48 final size:47
Alignment explanation
Indices: 81788553--81788870 Score: 289
Period size: 48 Copynumber: 6.6 Consensus size: 47
81788543 TATGTGTGCC
* *
81788553 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCTACGATATGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGATATGAGAGCT
* * * * * * * *
81788601 AGTGTAAGACCATGTTTGGAACATTGCATCGACGATGTTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGATATGAGAGCT
* * * *
81788649 AATGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGATATGAGAGCT
* * * *
81788697 AGTATAAGACCATGT-TCGGGACATGGCATCAGCCACAACATGAGAGCT
1 AGTGTAAGACCATGTCT-GGGACATGGCATC-GGCACGATATGAGAGCT
* * * * *
81788745 AGTGTAAGACCATGTCTAGGATATGGCATCGACATTGAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGATATGAGAGCT
* * *
81788793 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGATATG-AGAGCT
* * *
81788841 AGTGTAAGACCATGTTTGGAACATAGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
81788871 AACAATTCAC
Statistics
Matches: 217, Mismatches: 46, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
47 5 0.02
48 206 0.95
49 6 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATATGAGAGCT
Found at i:81788726 original size:96 final size:97
Alignment explanation
Indices: 81788550--81788870 Score: 339
Period size: 96 Copynumber: 3.3 Consensus size: 97
81788540 TGATATGTGT
* * *
81788550 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGC-TACGATATGAAAGCTAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGATATGAGAGCTAGTGTAAGACCAT
* * * * *****
81788614 GTTTGGAACATTGCATCGA-CGATGTTGTGAGA
65 GTTCGGGACATGGCATCGAGCCACAACATGAGA
* * * *
81788646 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGCGCTAGTATAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATG
81788711 TTCGGGACATGGCATC-AGCCACAACATGAGA
66 TTCGGGACATGGCATCGAGCCACAACATGAGA
* * * * *
81788742 GCTAGTGTAAGACCATGTCTAGGATATGGCATCGACATTGAGATGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATG
* *
81788807 -TCTGGGACATGGCATCG-GCCTCGACATGTA-A
66 TTC-GGGACATGGCATCGAGCCACAACATG-AGA
* * *
81788838 GCCAGTGTAAGACCATGTTTGGAACATAGCATC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
81788871 AACAATTCAC
Statistics
Matches: 187, Mismatches: 33, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
95 3 0.02
96 182 0.97
97 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (97 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATG
TTCGGGACATGGCATCGAGCCACAACATGAGA
Found at i:81788800 original size:144 final size:144
Alignment explanation
Indices: 81788540--81788871 Score: 393
Period size: 144 Copynumber: 2.3 Consensus size: 144
81788530 AACATTTGAG
* * * * * *
81788540 TGATATGTGTGCCAGTGTAAGACCATG-TCTGGGACATGGCGTCGGCTACGATATGAAAGCTAGT
1 TGATATGTGAGCCAGTGTAAGACCATGTTC-GGGACATGGCATCAGCCACAACATGAAAGCTAGT
* * *
81788604 GTAAGACCATGTTTGGAACATTGCATCGACGATGTTGTGAGAGCCAATGTAAGACCATGTCTGGG
65 GTAAGACCATGTTAGGAACATGGCATCGACGATGTAGTGAGAGCCAATGTAAGACCATGTCTGGG
81788669 ACATGGCATCGGCAT
130 ACATGGCATCGGCAT
* * * *
81788684 TGATATGTGCGCTAGTATAAGACCATGTTCGGGACATGGCATCAGCCACAACATGAGAGCTAGTG
1 TGATATGTGAGCCAGTGTAAGACCATGTTCGGGACATGGCATCAGCCACAACATGAAAGCTAGTG
* * *
81788749 TAAGACCATGTCTAGG-ATATGGCATCGAC-AT-TGAGATGAGAGCTAGTGTAAGACCATGTCTG
66 TAAGACCATGT-TAGGAACATGGCATCGACGATGT-AG-TGAGAGCCAATGTAAGACCATGTCTG
*
81788811 GGACATGGCATCGGCCT
128 GGACATGGCATCGGCAT
* * * * * *
81788828 CGACATGTAAGCCAGTGTAAGACCATGTTTGGAACATAGCATCA
1 TGATATGTGAGCCAGTGTAAGACCATGTTCGGGACATGGCATCA
81788872 ACAATTCACC
Statistics
Matches: 159, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
142 1 0.01
143 3 0.02
144 150 0.94
145 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (144 bp):
TGATATGTGAGCCAGTGTAAGACCATGTTCGGGACATGGCATCAGCCACAACATGAAAGCTAGTG
TAAGACCATGTTAGGAACATGGCATCGACGATGTAGTGAGAGCCAATGTAAGACCATGTCTGGGA
CATGGCATCGGCAT
Found at i:81792000 original size:46 final size:45
Alignment explanation
Indices: 81791950--81792122 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
81791940 TGGTTGAGCA
*
81791950 TCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATG
* * *
81791996 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAA-T--G
* *
81792041 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATG
* *
81792089 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81792123 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAATG
Found at i:81792106 original size:93 final size:93
Alignment explanation
Indices: 81791947--81792117 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
81791937 GGATGGTTGA
* * * * *
81791947 GCATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
81792012 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81792040 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
81792105 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81792118 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81794842 original size:47 final size:47
Alignment explanation
Indices: 81794732--81795004 Score: 187
Period size: 47 Copynumber: 5.8 Consensus size: 47
81794722 TTAATTGTGT
* *
81794732 GCTAGTGTAAGA-CGTGTCTGGGACAT-GCATCGGCCACATT--ATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTCGACGAGA
* *
81794778 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATTCAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTC-GACGAGA
* *
81794826 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATC-AGCA-ACGA-GATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTCGACGA-GA
* * * * * * *
81794870 G-TCAGTGTAAGACCATGTTTGGGACTTCGCGTCGGC-CTCGATTTCGATA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACATTCGA---CGAGA
* *
81794919 G-TCAGTGTAAGATCATGTCTGGGACATGGCATCGAC-TT-GATGTATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACATTCGACG-A-GA
*
81794966 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATT
81795005 ATACCCTATA
Statistics
Matches: 181, Mismatches: 26, Indels: 38
0.74 0.11 0.16
Matches are distributed among these distances:
43 3 0.02
44 13 0.07
45 20 0.11
46 27 0.15
47 60 0.33
48 25 0.14
49 31 0.17
50 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTCGACGAGA
Found at i:81807048 original size:109 final size:109
Alignment explanation
Indices: 81806857--81807075 Score: 429
Period size: 109 Copynumber: 2.0 Consensus size: 109
81806847 GGTACCTTCA
81806857 CTCTCTTTGATACTAATGTGATTGCATTGATTGACCCTGGCTCTACTCATTCATATGTATGCGAA
1 CTCTCTTTGATACTAATGTGATTGCATTGATTGACCCTGGCTCTACTCATTCATATGTATGCGAA
81806922 ACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTACTGAGTT
66 ACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTACTGAGTT
*
81806966 CTCTCTTTGATACTAATGTGATTGCATTGATTGACCCTGGCTCTACTCATTCATATGTATGTGAA
1 CTCTCTTTGATACTAATGTGATTGCATTGATTGACCCTGGCTCTACTCATTCATATGTATGCGAA
81807031 ACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTACTGAGTT
66 ACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTACTGAGTT
81807075 C
1 C
81807076 GTAATTCGAG
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 109 1.00
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (109 bp):
CTCTCTTTGATACTAATGTGATTGCATTGATTGACCCTGGCTCTACTCATTCATATGTATGCGAA
ACCTTAGCATCCAGTAAGACTCTACCTGTTGAGTCTACTGAGTT
Found at i:81812753 original size:39 final size:40
Alignment explanation
Indices: 81812616--81812799 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
81812606 GCTACTCGTT
*
81812616 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
81812656 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
81812696 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCT-GCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
81812734 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
81812775 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81812800 CATCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
37 2 0.02
38 13 0.11
39 32 0.26
40 63 0.52
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:81817679 original size:28 final size:27
Alignment explanation
Indices: 81817624--81817736 Score: 106
Period size: 27 Copynumber: 4.1 Consensus size: 27
81817614 AGCATGGCTG
* *
81817624 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
81817650 CCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
* *
81817678 CCAGA-ACAGATATATGGGGTAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
* *
81817705 CCAGAT-CAGATAATTTGTGGTATAGCCA
1 CCAGATACAGATAA--TGTGGCAGAGCCA
81817733 CCAG
1 CCAG
81817737 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
26 5 0.07
27 37 0.51
28 31 0.42
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:81819206 original size:24 final size:24
Alignment explanation
Indices: 81819169--81819242 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
81819159 ACACAGTTCA
*
81819169 CCCTAATCAGCTCCTAAATCCTCT
1 CCCTGATCAGCTCCTAAATCCTCT
*
81819193 TCCTGATCAGCTCCTAAATCCTCT
1 CCCTGATCAGCTCCTAAATCCTCT
* *
81819217 CCCTTATCAGCTCCTAAATCTTCT
1 CCCTGATCAGCTCCTAAATCCTCT
81819241 CC
1 CC
81819243 AGACAGACTC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.22, C:0.41, G:0.05, T:0.32
Consensus pattern (24 bp):
CCCTGATCAGCTCCTAAATCCTCT
Found at i:81820598 original size:116 final size:116
Alignment explanation
Indices: 81820433--81820665 Score: 412
Period size: 116 Copynumber: 2.0 Consensus size: 116
81820423 AACCCATAGG
*
81820433 CCCATAGCAGATACAGAACAAATATATCATGAATGCAGAAATCCCAACCCAGAGCCATCCATAAC
1 CCCATAGCAGATACAGAACAAATATATCATGAATGCAGAAATCCCAACCCAGAGCCACCCATAAC
81820498 ACCCCCGTACCAGCCTTACACCATGTGGGGAGACTACTCGACCCACCCAAC
66 ACCCCCGTACCAGCCTTACACCATGTGGGGAGACTACTCGACCCACCCAAC
* * *
81820549 CCCATAGCAGATACAGAACAAGTATATCATGAATTCAGAAATCCCAACCCAGATCCACCCATAAC
1 CCCATAGCAGATACAGAACAAATATATCATGAATGCAGAAATCCCAACCCAGAGCCACCCATAAC
* *
81820614 ACCCCTGTACCAGGCTTACACCATGTGGGGAGACTACTCGACCCACCCAAC
66 ACCCCCGTACCAGCCTTACACCATGTGGGGAGACTACTCGACCCACCCAAC
81820665 C
1 C
81820666 GCTACATACC
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 111 1.00
ACGTcount: A:0.35, C:0.35, G:0.15, T:0.15
Consensus pattern (116 bp):
CCCATAGCAGATACAGAACAAATATATCATGAATGCAGAAATCCCAACCCAGAGCCACCCATAAC
ACCCCCGTACCAGCCTTACACCATGTGGGGAGACTACTCGACCCACCCAAC
Found at i:81820746 original size:27 final size:26
Alignment explanation
Indices: 81820698--81820749 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
81820688 GCAAGGCTGC
*
81820698 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
81820724 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
81820750 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:81820881 original size:27 final size:26
Alignment explanation
Indices: 81820833--81820884 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
81820823 ACGAGGCTGC
*
81820833 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
81820859 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
81820885 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:81820886 original size:67 final size:67
Alignment explanation
Indices: 81820685--81820903 Score: 268
Period size: 67 Copynumber: 3.3 Consensus size: 67
81820675 CACAGAAATC
*
81820685 GCAGCAAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGA
1 GCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGA
81820750 TT
66 TT
*** * *
81820752 GCAGCGAGGCTGCCAGA-ACNCT-A-G--GCCACCAGAACAGATATATATATATGTGGCGAAGCC
1 GCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAG------ATATATGTGGCGAGGCC
*
81820812 ACTAGATT
60 ACCAGATT
* *
81820820 ACAACGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGA
1 GCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGA
81820885 TT
66 TT
81820887 GCAGCGAGGCTGCCAGA
1 GCAGCGAGGCTGCCAGA
81820904 ACGCTTCCTC
Statistics
Matches: 124, Mismatches: 17, Indels: 22
0.76 0.10 0.13
Matches are distributed among these distances:
62 12 0.10
64 1 0.01
65 1 0.01
66 2 0.02
67 54 0.44
68 38 0.31
69 2 0.02
70 1 0.01
71 1 0.01
73 12 0.10
ACGTcount: A:0.32, C:0.23, G:0.28, T:0.17
Consensus pattern (67 bp):
GCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGA
TT
Found at i:81821534 original size:26 final size:26
Alignment explanation
Indices: 81821482--81821533 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
81821472 TCACACAAGT
* *
81821482 TAGTCATTTACGCTCGATGGGTAAAA
1 TAGTCATTTACCCTCGAGGGGTAAAA
*
81821508 TAGTCATTTTACCCTCTAGGGGTAAA
1 TAGTCA-TTTACCCTCGAGGGGTAAA
81821534 TCGGTAGTCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TAGTCATTTACCCTCGAGGGGTAAAA
Found at i:81821794 original size:122 final size:122
Alignment explanation
Indices: 81821572--81821815 Score: 452
Period size: 122 Copynumber: 2.0 Consensus size: 122
81821562 TAGTAATTCT
* *
81821572 ACAACTTATCCACTTGGGCCTACGGACCCATTGGGACCACATGGCCCATTTCAGCCCATCGCGGC
1 ACAACTTATCCACTTGGGCCTACAGACCCATTGGGACCACATGGCCCATTTCAACCCATCGCGGC
*
81821637 CCGAAATAGCCGTCCTACTGCTAGAGTAATGAGAAATACACACCTGTTAGGAGACTG
66 CCGAAATAGCCGTCCTACTGCTAGAGTAATAAGAAATACACACCTGTTAGGAGACTG
81821694 ACAACTTATCCACTTGGGCCTACAGACCCATTGGGACCACATGGCCCATTTCAACCCATCGCGGC
1 ACAACTTATCCACTTGGGCCTACAGACCCATTGGGACCACATGGCCCATTTCAACCCATCGCGGC
*
81821759 CCGAAATAGTCGTCCTACTGCTAGAGTAATAAGAAATACACACCTGTTAGGAGACTG
66 CCGAAATAGCCGTCCTACTGCTAGAGTAATAAGAAATACACACCTGTTAGGAGACTG
81821816 CAGTTAATCC
Statistics
Matches: 118, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
122 118 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (122 bp):
ACAACTTATCCACTTGGGCCTACAGACCCATTGGGACCACATGGCCCATTTCAACCCATCGCGGC
CCGAAATAGCCGTCCTACTGCTAGAGTAATAAGAAATACACACCTGTTAGGAGACTG
Found at i:81829311 original size:15 final size:14
Alignment explanation
Indices: 81829291--81829321 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 14
81829281 CACCTTCTAA
81829291 AAAAAACCTAATTTT
1 AAAAAACC-AATTTT
81829306 AAAAAACCAATTTT
1 AAAAAACCAATTTT
81829320 AA
1 AA
81829322 TCTTTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (14 bp):
AAAAAACCAATTTT
Found at i:81830266 original size:27 final size:26
Alignment explanation
Indices: 81830218--81830277 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
81830208 GCGAGGCTGC
*
81830218 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * * *
81830245 CAGATATTGTGGCTAGGCCACCGGAA
1 CAGATATTGTGACGAAGCCACCAGAA
81830271 CAGATAT
1 CAGATAT
81830278 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:81833502 original size:28 final size:29
Alignment explanation
Indices: 81833390--81833514 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
81833380 GAAAGCATGA
* * *
81833390 ATATGAAAGTGATTTGGGGCTAATGGGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
81833419 ATATGAATGTGATTTGGGCCTAATGAGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
81833448 ATACGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
81833477 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
81833505 ATATGCATGT
1 ATATGAATGT
81833515 ATGTAGACTT
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 23 0.27
29 62 0.73
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:81835736 original size:54 final size:54
Alignment explanation
Indices: 81835676--81835819 Score: 171
Period size: 54 Copynumber: 2.7 Consensus size: 54
81835666 CTCGACTTGT
* *
81835676 AAAATTACCAAAGTACCCCCGATTTACAAAATTACCGTTTTACCCCCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTACAAAATTACCGTTTTACCCCCGATTTAC
* **** * * *
81835730 ATAATTACCGTTTTACCCTCGATTTACATAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTACAAAATTACCGTTTTACCCCCGATTTAC
* * *
81835784 AAAATTACTAAAATACCCTTGGTTTACAAAATTACC
1 AAAATTACCAAAATACCCTCGATTTACAAAATTACC
81835820 AAAATACCCT
Statistics
Matches: 71, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.34, C:0.25, G:0.07, T:0.34
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTCGATTTACAAAATTACCGTTTTACCCCCGATTTAC
Found at i:81835792 original size:27 final size:27
Alignment explanation
Indices: 81835689--81835791 Score: 161
Period size: 27 Copynumber: 3.8 Consensus size: 27
81835679 ATTACCAAAG
81835689 TACCCCCGATTTACAAAATTACCGTTT
1 TACCCCCGATTTACAAAATTACCGTTT
*
81835716 TACCCCCGATTTACATAATTACCGTTT
1 TACCCCCGATTTACAAAATTACCGTTT
* * *
81835743 TACCCTCGATTTACATAATTACTGTTT
1 TACCCCCGATTTACAAAATTACCGTTT
*
81835770 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACAAAATTAC
81835792 TAAAATACCC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.37
Consensus pattern (27 bp):
TACCCCCGATTTACAAAATTACCGTTT
Found at i:81835800 original size:27 final size:27
Alignment explanation
Indices: 81835644--81835936 Score: 155
Period size: 27 Copynumber: 10.9 Consensus size: 27
81835634 AATACTTTAG
* **
81835644 TTTACCAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ** * *
81835671 CTTGTAAAATTACCAAAGTACCCCCGA
1 TTTACAAAATTACCAAAATACCCTCGA
**** *
81835698 TTTACAAAATTACCGTTTTACCCCCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ****
81835725 TTTACATAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* *****
81835752 TTTACATAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *
81835779 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
81835806 TTTACAAAATTACCAAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *
81835833 -TCAGTAAAATTACCAAAATACCCTAG-
1 TTTA-CAAAATTACCAAAATACCCTCGA
* ** * * *
81835859 TCTGTAAAATTGCTAAAATACCC-CTGG
1 TTTACAAAATTACCAAAATACCCTC-GA
**
81835886 TTTGTAAAATTACCAAAATACCC-CTGA
1 TTTACAAAATTACCAAAATACCCTC-GA
* *
81835913 TTTTCAAAGTTA-CAGAAATACCCT
1 TTTACAAAATTACCA-AAATACCCT
81835937 TGACTTTCTA
Statistics
Matches: 216, Mismatches: 44, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
26 22 0.10
27 194 0.90
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.31
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:81835828 original size:54 final size:54
Alignment explanation
Indices: 81835643--81835992 Score: 145
Period size: 54 Copynumber: 6.5 Consensus size: 54
81835633 GAATACTTTA
* ** * ** * **
81835643 GTTTACCAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCG
1 GTTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTTG
* **** * * **** *
81835697 ATTTACAAAATTACCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTCG
1 GTTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTTG
* * ***** *
81835751 ATTTACATAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTTG
* * *
81835805 GTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCAAAATACCC-TA
1 GTTTACAAAATTACCAAAATACCCTCGATTTA-CAAAATTACCAAAATACCCTTG
* ** * * * ** *
81835858 GTCTGTAAAATTGCTAAAATACCC-CTGGTTTGTAAAATTACCAAAATACCCCTG
1 GTTTACAAAATTACCAAAATACCCTC-GATTTACAAAATTACCAAAATACCCTTG
* * * * ** *
81835912 ATTTTCAAAGTTA-CAGAAATACCCTTGACTTT-CTAAAAATT-TTAGAAATACCATTG
1 GTTTACAAAATTACCA-AAATACCCTCGA-TTTAC--AAAATTACCA-AAATACCCTTG
**
81835968 GTTTACAAAATTACTGAAATACCCT
1 GTTTACAAAATTACCAAAATACCCT
81835993 TGGTTTGTAG
Statistics
Matches: 220, Mismatches: 65, Indels: 20
0.72 0.21 0.07
Matches are distributed among these distances:
52 1 0.00
53 43 0.20
54 138 0.63
55 4 0.02
56 34 0.15
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.32
Consensus pattern (54 bp):
GTTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTTG
Found at i:81835995 original size:27 final size:27
Alignment explanation
Indices: 81835770--81835998 Score: 144
Period size: 27 Copynumber: 8.4 Consensus size: 27
81835760 ATTACTGTTT
* *
81835770 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*
81835797 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * * * *
81835824 TACCC-TCGATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-CAAAATTACTAAAA
* * ** *
81835851 TACCC-TAGTCTGTAAAATTGCTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* ** *
81835877 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * * *
81835904 TACCCCTGATTTTCAAAGTTAC-AGAAA
1 TACCCTTGGTTTACAAAATTACTA-AAA
* *
81835931 TACCCTTGACTTT-CTAAAAATT-TTAGAAA
1 TACCCTTG-GTTTAC--AAAATTACTA-AAA
* *
81835960 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
81835987 TACCCTTGGTTT
1 TACCCTTGGTTT
81835999 GTAGATTTAC
Statistics
Matches: 162, Mismatches: 31, Indels: 18
0.77 0.15 0.09
Matches are distributed among these distances:
26 22 0.14
27 115 0.71
28 7 0.04
29 18 0.11
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:81836082 original size:27 final size:27
Alignment explanation
Indices: 81836039--81836112 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
81836029 AAATGACTAA
*
81836039 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
81836066 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
81836093 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
81836113 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:81836116 original size:27 final size:27
Alignment explanation
Indices: 81836052--81836116 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
81836042 ACCCCTAATA
*
81836052 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
81836079 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
81836106 GGTAAAATGAC
1 GGTAAAATGAC
81836117 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:81836966 original size:25 final size:25
Alignment explanation
Indices: 81836927--81836995 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
81836917 GGAAGTACTA
* * *
81836927 AAAGGGCTCTACCCCAGTTTA-CCG
1 AAAGGGCTTTGCCCCAGTTTATCAG
81836951 AAAGGGGCTTTGCCCCAGTTTATCAG
1 AAA-GGGCTTTGCCCCAGTTTATCAG
81836977 AAAGGGCTTTGCCCCAGTT
1 AAAGGGCTTTGCCCCAGTT
81836996 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
24 3 0.08
25 32 0.80
26 5 0.12
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAGTTTATCAG
Found at i:81837300 original size:78 final size:78
Alignment explanation
Indices: 81837171--81837323 Score: 243
Period size: 78 Copynumber: 2.0 Consensus size: 78
81837161 TTCATTAACA
* * * *
81837171 TTACATGTGATATTGAAATAGGCCTAAGGGCCATGCCGTTTACAGTGAAGGCTTCATCCCAGTGA
1 TTACATGTGATATTGAAATAGGCCTAAGGGCCATACCGTTTACAATAAAGGCTTCAGCCCAGTGA
81837236 TATGATTTATGAT
66 TATGATTTATGAT
* * *
81837249 TTACATGTGATATTGAAATGGGCCTAATGGCCATACCGTTTACAATAAAGGCTTCGGCCCAGTGA
1 TTACATGTGATATTGAAATAGGCCTAAGGGCCATACCGTTTACAATAAAGGCTTCAGCCCAGTGA
81837314 TATGATTTAT
66 TATGATTTAT
81837324 AAAAAGGCTT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 68 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (78 bp):
TTACATGTGATATTGAAATAGGCCTAAGGGCCATACCGTTTACAATAAAGGCTTCAGCCCAGTGA
TATGATTTATGAT
Found at i:81837330 original size:31 final size:31
Alignment explanation
Indices: 81837295--81837409 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
81837285 CGTTTACAAT
*
81837295 AAAGGCTTCGGCCCAGTGATATGATTTATAA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
81837326 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
81837357 AAAGGCTTCGGACCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
81837388 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
81837410 TCAAGACTAA
Statistics
Matches: 80, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.06
31 75 0.94
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:81840160 original size:25 final size:24
Alignment explanation
Indices: 81840122--81840191 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
81840112 AGGAAGTGCT
*
81840122 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
81840146 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
81840171 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
81840192 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:81840204 original size:24 final size:24
Alignment explanation
Indices: 81840121--81840204 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
81840111 GAGGAAGTGC
* *
81840121 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
81840146 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
81840170 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
81840194 TAAAAGAGGCT
1 TAAAAG-GGCT
81840205 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:81840398 original size:42 final size:42
Alignment explanation
Indices: 81840339--81840472 Score: 259
Period size: 42 Copynumber: 3.2 Consensus size: 42
81840329 TAGTCTCCCC
81840339 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
81840381 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
81840423 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
81840465 AAATGGGC
1 AAATGGGC
81840473 CTAAGGGCCA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:81840531 original size:31 final size:31
Alignment explanation
Indices: 81840496--81840672 Score: 338
Period size: 31 Copynumber: 5.7 Consensus size: 31
81840486 CGTTTACAGT
81840496 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
81840527 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
81840558 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
81840589 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
81840620 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
81840651 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
81840673 TCAAGACTAA
Statistics
Matches: 145, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
30 5 0.03
31 140 0.97
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:81842323 original size:16 final size:16
Alignment explanation
Indices: 81842298--81842331 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81842288 ATCCTAAAAA
* *
81842298 TTCTATTTCTGTTTTT
1 TTCTAATTCTATTTTT
81842314 TTCTAATTCTATTTTT
1 TTCTAATTCTATTTTT
81842330 TT
1 TT
81842332 AGGACTCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.03, T:0.74
Consensus pattern (16 bp):
TTCTAATTCTATTTTT
Found at i:81846073 original size:29 final size:29
Alignment explanation
Indices: 81845971--81846080 Score: 107
Period size: 29 Copynumber: 3.9 Consensus size: 29
81845961 TACCTATATC
* ** * *
81845971 TGGCCCATTAAGCCCA-ATCGTATTCATA
1 TGGCCCATTAGGCCCAGATCACATTTACA
* * * *
81845999 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAGATCACATTTACA
81846028 TGGCCCATTAGGCCCAGATCACATTTACA
1 TGGCCCATTAGGCCCAGATCACATTTACA
* *
81846057 TGGCCCGTTCGGCCCAG-TCACATT
1 TGGCCCATTAGGCCCAGATCACATT
81846081 CATAATCATG
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
28 22 0.32
29 47 0.68
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAGATCACATTTACA
Found at i:81849555 original size:28 final size:29
Alignment explanation
Indices: 81849511--81849587 Score: 102
Period size: 28 Copynumber: 2.7 Consensus size: 29
81849501 AATCGTATTC
*
81849511 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
* *
81849540 ATATAGCCCATT-GGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
* *
81849568 ATATGGCCCGTTCGGCCCAA
1 ATATGGCCCATTAGGCCCAA
81849588 TGACGTTCAT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 24 0.57
29 18 0.43
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:81849680 original size:17 final size:18
Alignment explanation
Indices: 81849658--81849691 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81849648 TGCTTAATAT
81849658 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
81849675 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
81849692 TTCGGCCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:81849827 original size:8 final size:8
Alignment explanation
Indices: 81849810--81849844 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
81849800 GTAGCCAAAC
81849810 TTTTGGCA
1 TTTTGGCA
*
81849818 TTTTGACA
1 TTTTGGCA
*
81849826 TTTTGGTA
1 TTTTGGCA
81849834 TTTTGGCA
1 TTTTGGCA
81849842 TTT
1 TTT
81849845 CGGCTTTTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.14, C:0.09, G:0.20, T:0.57
Consensus pattern (8 bp):
TTTTGGCA
Found at i:81852264 original size:40 final size:40
Alignment explanation
Indices: 81852199--81852376 Score: 243
Period size: 40 Copynumber: 4.5 Consensus size: 40
81852189 GGATTGATAA
* *
81852199 CCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
81852239 CCGGGCTAAGTCCCGTAGGCGTTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
81852279 TCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* **
81852320 -CGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
81852359 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
81852377 TACTTGGTTT
Statistics
Matches: 123, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 17 0.14
40 104 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:81860158 original size:282 final size:282
Alignment explanation
Indices: 81859654--81860219 Score: 1132
Period size: 282 Copynumber: 2.0 Consensus size: 282
81859644 ATTACTTTTG
81859654 AAAAAAACTTGATTGATTGAGACAATACCTAAGGAAAAATCCACCTAGACTTCACTTGTTATTTG
1 AAAAAAACTTGATTGATTGAGACAATACCTAAGGAAAAATCCACCTAGACTTCACTTGTTATTTG
81859719 ACTCTGAATTGGACAATTTATTCGCTTGACTTAATCCGTAGAAATCCCTAAGTTATATTATTATC
66 ACTCTGAATTGGACAATTTATTCGCTTGACTTAATCCGTAGAAATCCCTAAGTTATATTATTATC
81859784 TCTTTCGAGACTAACAACGTCTAACCCTAGGTTGAATAATTGAAATCTCTTTCTAATTAACTCCC
131 TCTTTCGAGACTAACAACGTCTAACCCTAGGTTGAATAATTGAAATCTCTTTCTAATTAACTCCC
81859849 TAGGGTTGCATTAACTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCGGTAAAATCTT
196 TAGGGTTGCATTAACTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCGGTAAAATCTT
81859914 GTCACCCTATCTCTAGGCGCGC
261 GTCACCCTATCTCTAGGCGCGC
81859936 AAAAAAACTTGATTGATTGAGACAATACCTAAGGAAAAATCCACCTAGACTTCACTTGTTATTTG
1 AAAAAAACTTGATTGATTGAGACAATACCTAAGGAAAAATCCACCTAGACTTCACTTGTTATTTG
81860001 ACTCTGAATTGGACAATTTATTCGCTTGACTTAATCCGTAGAAATCCCTAAGTTATATTATTATC
66 ACTCTGAATTGGACAATTTATTCGCTTGACTTAATCCGTAGAAATCCCTAAGTTATATTATTATC
81860066 TCTTTCGAGACTAACAACGTCTAACCCTAGGTTGAATAATTGAAATCTCTTTCTAATTAACTCCC
131 TCTTTCGAGACTAACAACGTCTAACCCTAGGTTGAATAATTGAAATCTCTTTCTAATTAACTCCC
81860131 TAGGGTTGCATTAACTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCGGTAAAATCTT
196 TAGGGTTGCATTAACTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCGGTAAAATCTT
81860196 GTCACCCTATCTCTAGGCGCGC
261 GTCACCCTATCTCTAGGCGCGC
81860218 AA
1 AA
81860220 CCAACTCCGC
Statistics
Matches: 284, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
282 284 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.33
Consensus pattern (282 bp):
AAAAAAACTTGATTGATTGAGACAATACCTAAGGAAAAATCCACCTAGACTTCACTTGTTATTTG
ACTCTGAATTGGACAATTTATTCGCTTGACTTAATCCGTAGAAATCCCTAAGTTATATTATTATC
TCTTTCGAGACTAACAACGTCTAACCCTAGGTTGAATAATTGAAATCTCTTTCTAATTAACTCCC
TAGGGTTGCATTAACTCGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCGGTAAAATCTT
GTCACCCTATCTCTAGGCGCGC
Found at i:81871843 original size:117 final size:117
Alignment explanation
Indices: 81871637--81871871 Score: 470
Period size: 117 Copynumber: 2.0 Consensus size: 117
81871627 AATTGAGCAA
81871637 AGAATCGTAAAACTCCCTGGATCTTTTAGTTTGTTGGGTAGTTTATGCTGTAGAATAGCTGAGCA
1 AGAATCGTAAAACTCCCTGGATCTTTTAGTTTGTTGGGTAGTTTATGCTGTAGAATAGCTGAGCA
81871702 AACTGCGTTTAGCTTCACATGCGAAGCCTCGTCCAACTTCTGCTTATTTTCT
66 AACTGCGTTTAGCTTCACATGCGAAGCCTCGTCCAACTTCTGCTTATTTTCT
81871754 AGAATCGTAAAACTCCCTGGATCTTTTAGTTTGTTGGGTAGTTTATGCTGTAGAATAGCTGAGCA
1 AGAATCGTAAAACTCCCTGGATCTTTTAGTTTGTTGGGTAGTTTATGCTGTAGAATAGCTGAGCA
81871819 AACTGCGTTTAGCTTCACATGCGAAGCCTCGTCCAACTTCTGCTTATTTTCT
66 AACTGCGTTTAGCTTCACATGCGAAGCCTCGTCCAACTTCTGCTTATTTTCT
81871871 A
1 A
81871872 AAAGCTCCTT
Statistics
Matches: 118, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 118 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36
Consensus pattern (117 bp):
AGAATCGTAAAACTCCCTGGATCTTTTAGTTTGTTGGGTAGTTTATGCTGTAGAATAGCTGAGCA
AACTGCGTTTAGCTTCACATGCGAAGCCTCGTCCAACTTCTGCTTATTTTCT
Found at i:81873583 original size:40 final size:40
Alignment explanation
Indices: 81873483--81873747 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
81873473 GCTCCTCGTT
* * * *
81873483 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
81873523 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
81873562 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
81873602 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
81873642 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
81873682 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
81873723 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
81873748 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:81873707 original size:80 final size:80
Alignment explanation
Indices: 81873450--81873747 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
81873440 AAATCACGTA
* ** * * *
81873450 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
81873512 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
81873528 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
81873591 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
81873608 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
81873672 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
81873688 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
81873748 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:81873756 original size:41 final size:41
Alignment explanation
Indices: 81873679--81873756 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
81873669 TTTGTATCTC
* * *
81873679 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
81873720 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
81873757 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:81881528 original size:40 final size:40
Alignment explanation
Indices: 81881437--81881859 Score: 636
Period size: 40 Copynumber: 10.6 Consensus size: 40
81881427 TCCTCGTTCA
* * * * *
81881437 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA-G
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
81881476 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
81881516 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
81881556 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81881596 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81881636 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81881676 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
81881716 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
81881756 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
81881796 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
81881836 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81881860 CAGCATTCAA
Statistics
Matches: 360, Mismatches: 20, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
39 35 0.10
40 317 0.88
41 8 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:81887125 original size:29 final size:28
Alignment explanation
Indices: 81887087--81887151 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 28
81887077 CTTTCACTTA
* *
81887087 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCT-AATATACACT
* *
81887116 TTTCTCAATTTAACCCCTAATATGCATT
1 TTTCTCAATTTAACCCCTAATATACACT
81887144 TTTCTCAA
1 TTTCTCAA
81887152 AATCACTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 15 0.47
29 17 0.53
ACGTcount: A:0.29, C:0.28, G:0.02, T:0.42
Consensus pattern (28 bp):
TTTCTCAATTTAACCCCTAATATACACT
Found at i:81889491 original size:33 final size:33
Alignment explanation
Indices: 81889446--81889539 Score: 99
Period size: 33 Copynumber: 2.9 Consensus size: 33
81889436 AACACAGTGT
* *
81889446 CAGTACAATCTGGGCCAAAGCCCTATTCAGTAA
1 CAGTACAGTCTGGGCCTAAGCCCTATTCAGTAA
*
81889479 CAGTACAGTCTGGGCCTTAGCCC--TT-A--AA
1 CAGTACAGTCTGGGCCTAAGCCCTATTCAGTAA
*
81889507 CAGTAGCAGTATGGGCCTAAGCCCTAATTCAGT
1 CAGTA-CAGTCTGGGCCTAAGCCCT-ATTCAGT
81889540 CTCGACATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
28 7 0.14
29 16 0.33
30 1 0.02
31 2 0.04
32 2 0.04
33 21 0.43
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (33 bp):
CAGTACAGTCTGGGCCTAAGCCCTATTCAGTAA
Found at i:81889539 original size:29 final size:28
Alignment explanation
Indices: 81889477--81889531 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
81889467 CCTATTCAGT
* *
81889477 AACAGTACAGTCTGGGCCTTAGCCCTTA
1 AACAGTACAGTATGGGCCTAAGCCCTTA
81889505 AACAGTAGCAGTATGGGCCTAAGCCCT
1 AACAGTA-CAGTATGGGCCTAAGCCCT
81889532 AATTCAGTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (28 bp):
AACAGTACAGTATGGGCCTAAGCCCTTA
Found at i:81889623 original size:30 final size:30
Alignment explanation
Indices: 81889545--81889627 Score: 141
Period size: 31 Copynumber: 2.7 Consensus size: 30
81889535 TCAGTCTCGA
81889545 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACT-GGCCGAAGCCTTTTCATAAAT
81889575 CATATCACTGGACCGAAGCCTTTTCATAAAT
1 CATATCACTGG-CCGAAGCCTTTTCATAAAT
81889606 CATATCACTGGCCGAAGCCTTT
1 CATATCACTGGCCGAAGCCTTT
81889628 ACTGTAAGCG
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
30 18 0.35
31 33 0.65
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
CATATCACTGGCCGAAGCCTTTTCATAAAT
Found at i:81889874 original size:25 final size:25
Alignment explanation
Indices: 81889846--81889915 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
81889836 CTCTTTTAAT
81889846 AACTGGGGCAAAGCCCTTTTTGACA
1 AACTGGGGCAAAGCCCTTTTTGACA
**
81889871 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGACA
*
81889896 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
81889916 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGACA
Found at i:81890889 original size:27 final size:26
Alignment explanation
Indices: 81890842--81891061 Score: 93
Period size: 27 Copynumber: 8.1 Consensus size: 26
81890832 GTAAATCTAC
81890842 AAACCAAGGTATTTCAGTAATTTTGT
1 AAACCAAGGTATTTCAGTAATTTTGT
81890868 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAA-GGTATTTC-AGTAATTTTGT
* **
81890894 AGAAAGTCAAGGGTATTTTTGTAATTTTGT
1 --AAA-CCAA-GGTATTTCAGTAATTTTGT
* * ** *
81890924 AAATCAGGGGTATTTTGGTAATTTTAT
1 AAACCA-AGGTATTTCAGTAATTTTGT
* * * ***
81890951 AAACTGAGGGTATTTCAGTTATTTCAC
1 AAAC-CAAGGTATTTCAGTAATTTTGT
* * ** **
81890978 AAACTAGTGGTATTTTGGTAATTTTAC
1 AAACCA-AGGTATTTCAGTAATTTTGT
* * **
81891005 AAACTAGGGGTATTTTGGTAATTTTGT
1 AAACCA-AGGTATTTCAGTAATTTTGT
* *
81891032 AAACCAATAGTATTTTAGTAATTTTGT
1 AAACCAA-GGTATTTCAGTAATTTTGT
81891059 AAA
1 AAA
81891062 TCGAGGGTAA
Statistics
Matches: 156, Mismatches: 27, Indels: 21
0.76 0.13 0.10
Matches are distributed among these distances:
26 9 0.06
27 121 0.78
28 8 0.05
29 17 0.11
30 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (26 bp):
AAACCAAGGTATTTCAGTAATTTTGT
Found at i:81891045 original size:54 final size:54
Alignment explanation
Indices: 81890849--81891056 Score: 186
Period size: 54 Copynumber: 3.8 Consensus size: 54
81890839 TACAAACCAA
* * * *
81890849 GGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTCAAG
1 GGTATTTCAGTAATTTTGTAAACCAATGGTATTT-TGGTAA-TTTTACAAACT-AGG
** * ** *
81890905 GGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTATAAACT-GAG
1 GGTATTTCAGTAATTTTGTAAACCAATGGTATTTTGGTAATTTTACAAACTAG-G
* *** * *
81890959 GGTATTTCAGTTATTTCACAAACTAGTGGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTCAGTAATTTTGTAAACCAATGGTATTTTGGTAATTTTACAAACTAGG
** * *
81891013 GGTATTTTGGTAATTTTGTAAACCAATAGTATTTTAGTAATTTT
1 GGTATTTCAGTAATTTTGTAAACCAATGGTATTTTGGTAATTTT
81891057 GTAAATCGAG
Statistics
Matches: 120, Mismatches: 29, Indels: 8
0.76 0.18 0.05
Matches are distributed among these distances:
54 77 0.64
55 11 0.09
56 32 0.27
ACGTcount: A:0.30, C:0.07, G:0.18, T:0.44
Consensus pattern (54 bp):
GGTATTTCAGTAATTTTGTAAACCAATGGTATTTTGGTAATTTTACAAACTAGG
Found at i:81891045 original size:81 final size:81
Alignment explanation
Indices: 81890905--81891055 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
81890895 GAAAGTCAAG
* ** ** *
81890905 GGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTATAAACTGAGGGTATTTCAGT
1 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTATAAACCAAGAGTATTTCAGT
*
81890970 TATTTCACAAACTAGT
66 AATTTCACAAACTAGT
* * *
81890986 GGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTAAACCAATAGTATTTTAG
1 GGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTATAAACCAAGAGTATTTCAG
81891050 TAATTT
65 TAATTT
81891056 TGTAAATCGA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
80 1 0.02
81 58 0.98
ACGTcount: A:0.29, C:0.07, G:0.19, T:0.45
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTATAAACCAAGAGTATTTCAGT
AATTTCACAAACTAGT
Found at i:81891080 original size:27 final size:27
Alignment explanation
Indices: 81891050--81891178 Score: 179
Period size: 27 Copynumber: 4.8 Consensus size: 27
81891040 AGTATTTTAG
*
81891050 TAATTTTGTAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* * *
81891077 TAATTCTATAAATCGAGGGTAACACGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
81891104 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGA
*
81891131 TAATTCTATAAATCGAGGGTAAAAC-A
1 TAATTCTGTAAATCGAGGGTAAAACGA
81891157 GTAATTCTGTAAATCGAGGGTA
1 -TAATTCTGTAAATCGAGGGTA
81891179 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGA
Found at i:81891097 original size:81 final size:81
Alignment explanation
Indices: 81891012--81891191 Score: 191
Period size: 81 Copynumber: 2.2 Consensus size: 81
81891002 TACAAACTAG
* * *** * *
81891012 GGGTATTTTGGTAATTTTGTAAACCAATAGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC-G
1 GGGTAATTTGGTAATTTTGTAAACCAAGAGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAG
81891076 ATAATTCTATAAATCGA
66 -TAATTCTATAAATCGA
*** * * * * *
81891093 GGGTAACACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAG
1 GGGTAATTTGGTAATTTTGTAAACCAAGAGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAG
*
81891158 TAATTCTGTAAATCGA
66 TAATTCTATAAATCGA
*
81891174 GGGTACTTTGGTAATTTT
1 GGGTAATTTGGTAATTTT
81891192 ACAAATTGAG
Statistics
Matches: 77, Mismatches: 21, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
81 76 0.99
82 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (81 bp):
GGGTAATTTGGTAATTTTGTAAACCAAGAGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAG
TAATTCTATAAATCGA
Found at i:81891189 original size:54 final size:54
Alignment explanation
Indices: 81891048--81891178 Score: 217
Period size: 54 Copynumber: 2.4 Consensus size: 54
81891038 ATAGTATTTT
* * * *
81891048 AGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAACAC
1 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
*
81891102 GGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
81891156 AGTAATTCTGTAAATCGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
81891179 CTTTGGTAAT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.28
Consensus pattern (54 bp):
AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
Found at i:81891197 original size:27 final size:27
Alignment explanation
Indices: 81890903--81891217 Score: 152
Period size: 27 Copynumber: 11.7 Consensus size: 27
81890893 TAGAAAGTCA
* *
81890903 AGGGTATTTTTGTAATTTTGTAAATC-
1 AGGGTATTTTGGTAATTTTATAAATCG
81890929 AGGGGTATTTTGGTAATTTTATAAA-CTG
1 A-GGGTATTTTGGTAATTTTATAAATC-G
** * * * *
81890957 AGGGTATTTCAGTTATTTCACAAA-CT
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
81890983 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTATAAATCG
* * *
81891010 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTGGTAATTTTATAAATCG
** * *
81891038 ATAGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
**** * *
81891065 AGGGTAAAACGATAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
**** * *
81891092 AGGGTAACACGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
*** *
81891119 AGGGTAAAATGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
***** * *
81891146 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
* * *
81891173 AGGGTACTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTATAAATCG
** *
81891200 AGGACATTTTAGTAATTT
1 AGGGTATTTTGGTAATTT
81891218 GGTAAACTAA
Statistics
Matches: 231, Mismatches: 52, Indels: 11
0.79 0.18 0.04
Matches are distributed among these distances:
26 4 0.02
27 223 0.97
28 4 0.02
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAATCG
Found at i:81891215 original size:81 final size:81
Alignment explanation
Indices: 81891043--81891216 Score: 181
Period size: 81 Copynumber: 2.1 Consensus size: 81
81891033 AACCAATAGT
* *
81891043 ATTTTAGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAACACGGTAAT
1 ATTTTAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAACACGGTAAT
** **
81891108 TCTGTAAATCGAGGGT
66 TCTACAAATCGAGGAC
*** * * **
81891124 AAAATGGTAATTCTATAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCGAGGGT-ACTTTGGTA
1 ATTTTAGTAATTCTATAAATCGAGGGTAAAACGA-TAATTCTATAAATCGAGGGTAAC-ACGGTA
* *
81891187 ATTTTACAAATTGAGGAC
64 ATTCTACAAATCGAGGAC
81891205 ATTTTAGTAATT
1 ATTTTAGTAATT
81891217 TGGTAAACTA
Statistics
Matches: 72, Mismatches: 19, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
80 3 0.04
81 69 0.96
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (81 bp):
ATTTTAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAACACGGTAAT
TCTACAAATCGAGGAC
Found at i:81897469 original size:48 final size:47
Alignment explanation
Indices: 81897372--81897595 Score: 180
Period size: 46 Copynumber: 4.8 Consensus size: 47
81897362 GGGTTACTGT
* * *
81897372 GAGCTAGTGTAAGACATGTCTGGCACAT-GCATCGGCCACATT---ACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCAT---CAACATTAAGACGA
* *
81897418 GAGCCAGTGTAAGACTATGTCTGGGACATGGCATCAGCATTGAGACGA
1 GAGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCAACATTAAGACGA
* * * *
81897466 GAGCTAGTGTAAGAAATGTCTGGGACAT-GCATCAACCTTAAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCAACATTAAGACG-A
* * * *
81897513 -AGCCAGTGTAAGACATGTCTGGGACAT-GTATCGAC--TACGA-GTT
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCAACATTAAGACG-A
* *
81897556 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCAACAT
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAACAT
81897596 CCTACCCCAT
Statistics
Matches: 147, Mismatches: 20, Indels: 20
0.79 0.11 0.11
Matches are distributed among these distances:
43 2 0.01
44 16 0.11
45 18 0.12
46 64 0.44
47 26 0.18
48 21 0.14
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCAACATTAAGACGA
Found at i:81914925 original size:82 final size:82
Alignment explanation
Indices: 81914807--81914973 Score: 316
Period size: 82 Copynumber: 2.0 Consensus size: 82
81914797 AATTTGCATG
* *
81914807 AAGAAATTCTATGCCTGAAGTGTCCAATTTGAATTTAGGGACCAAATTGAATAAGTTACAAAACT
1 AAGAAATCCTACGCCTGAAGTGTCCAATTTGAATTTAGGGACCAAATTGAATAAGTTACAAAACT
81914872 TGTTTTTTACAAGATTT
66 TGTTTTTTACAAGATTT
81914889 AAGAAATCCTACGCCTGAAGTGTCCAATTTGAATTTAGGGACCAAATTGAATAAGTTACAAAACT
1 AAGAAATCCTACGCCTGAAGTGTCCAATTTGAATTTAGGGACCAAATTGAATAAGTTACAAAACT
81914954 TGTTTTTTACAAGATTT
66 TGTTTTTTACAAGATTT
81914971 AAG
1 AAG
81914974 CATGAAATTG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 83 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (82 bp):
AAGAAATCCTACGCCTGAAGTGTCCAATTTGAATTTAGGGACCAAATTGAATAAGTTACAAAACT
TGTTTTTTACAAGATTT
Done.