Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 237 of 290
Found at i:81922284 original size:46 final size:46
Alignment explanation
Indices: 81922217--81922559 Score: 342
Period size: 46 Copynumber: 7.6 Consensus size: 46
81922207 GATGCCCTGA
* * *
81922217 TGTCTTTCAACCATGGTCTTATTCACTTTCTGATATGTTGTCGTAG
1 TGTCTTTCAACCATGGTCTTATTCATTTTCTGATATGATGTCATAG
* * * *
81922263 TGTCTTTCAACCATGGTCTTATTTATTTTCTGGTATGATGCCACAG
1 TGTCTTTCAACCATGGTCTTATTCATTTTCTGATATGATGTCATAG
**
81922309 TG-CATTTCAACCATGGTCTTATTCATTTTCCAATATGAT-TCCATCA-
1 TGTC-TTTCAACCATGGTCTTATTCATTTTCTGATATGATGT-CAT-AG
* ** **
81922355 TGTCTTTCAACCATGGTCGTATTCATTTTCCAATATGGCGTCATAG
1 TGTCTTTCAACCATGGTCTTATTCATTTTCTGATATGATGTCATAG
* * ** *
81922401 TGTCTTTCAACCATGGTCTTA--AATTTT-T-ATTTGATACCATTG
1 TGTCTTTCAACCATGGTCTTATTCATTTTCTGATATGATGTCATAG
* *
81922443 TGTCTTTCAACCATGGTCTCATTCATTTTCTGATATGATGTCATTG
1 TGTCTTTCAACCATGGTCTTATTCATTTTCTGATATGATGTCATAG
* * * *
81922489 TGTCATTCAACTATGCTCTTATTCATTTTC-GATAAGATGTCATAG
1 TGTCTTTCAACCATGGTCTTATTCATTTTCTGATATGATGTCATAG
* * * *
81922534 TGTCCTTCAACTATGCTCTTACTCAT
1 TGTCTTTCAACCATGGTCTTATTCAT
81922560 CTAAATCATG
Statistics
Matches: 249, Mismatches: 38, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
42 28 0.11
44 10 0.04
45 40 0.16
46 168 0.67
47 3 0.01
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.43
Consensus pattern (46 bp):
TGTCTTTCAACCATGGTCTTATTCATTTTCTGATATGATGTCATAG
Found at i:81922573 original size:45 final size:45
Alignment explanation
Indices: 81922475--81922576 Score: 125
Period size: 45 Copynumber: 2.3 Consensus size: 45
81922465 TCATTTTCTG
* * * **
81922475 ATATGATGTCATTGTGTCATTCAACTATGCTCTTATTCATTTTCG
1 ATATGATGTCATAGTGTCATTCAACTATGCTCTTACTCATTCTAA
* *
81922520 ATAAGATGTCATAGTGTCCTTCAACTATGCTCTTACTCA-TCTAA
1 ATATGATGTCATAGTGTCATTCAACTATGCTCTTACTCATTCTAA
81922564 ATCATGATGTCAT
1 AT-ATGATGTCAT
81922577 TGATAAACCA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 4 0.08
45 44 0.92
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (45 bp):
ATATGATGTCATAGTGTCATTCAACTATGCTCTTACTCATTCTAA
Found at i:81929221 original size:74 final size:74
Alignment explanation
Indices: 81929100--81929238 Score: 260
Period size: 74 Copynumber: 1.9 Consensus size: 74
81929090 TTTAGGGGCT
* *
81929100 TATAGCCGAAACTTCTTCAACCCTTGGATTCGGGTTTTACCATTGTTCTAAGGATAAATTTGCAC
1 TATAGCCAAAACTTCTTCAACCCTTGGATTCGGGTTTTACCATTGTTCTAAGGATAAATCTGCAC
81929165 TGGATTGCG
66 TGGATTGCG
81929174 TATAGCCAAAACTTCTTCAACCCTTGGATTCGGGTTTTACCATTGTTCTAAGGATAAATCTGCAC
1 TATAGCCAAAACTTCTTCAACCCTTGGATTCGGGTTTTACCATTGTTCTAAGGATAAATCTGCAC
81929239 CAGATTGCAT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 63 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35
Consensus pattern (74 bp):
TATAGCCAAAACTTCTTCAACCCTTGGATTCGGGTTTTACCATTGTTCTAAGGATAAATCTGCAC
TGGATTGCG
Found at i:81934361 original size:85 final size:85
Alignment explanation
Indices: 81934218--81934387 Score: 259
Period size: 85 Copynumber: 2.0 Consensus size: 85
81934208 ACTTAGAAGG
* *
81934218 GGGACGCAGAGTAGGAAGCAAGGAATTACTAAAGGAAAGTCGATTGATCCATCTCAGAAGCCGGA
1 GGGACGCAGAGTAAGAAGCAAGGAATTACTAAAGGAAAGCCGATTGATCCATCTCAGAAGCCGGA
81934283 TTCATCATCAAGACTAAAGA
66 TTCATCATCAAGACTAAAGA
* * * * * * *
81934303 GGGACGCAGAGTAAGAGGTAAGGAATTACTCAAGGGAAGCCGATTGGTCCATTTCAGAAGCTGGA
1 GGGACGCAGAGTAAGAAGCAAGGAATTACTAAAGGAAAGCCGATTGATCCATCTCAGAAGCCGGA
81934368 TTCATCATCAAGACTAAAGA
66 TTCATCATCAAGACTAAAGA
81934388 TCTCCTTCAA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 76 1.00
ACGTcount: A:0.37, C:0.17, G:0.27, T:0.19
Consensus pattern (85 bp):
GGGACGCAGAGTAAGAAGCAAGGAATTACTAAAGGAAAGCCGATTGATCCATCTCAGAAGCCGGA
TTCATCATCAAGACTAAAGA
Found at i:81934868 original size:86 final size:86
Alignment explanation
Indices: 81934757--81934927 Score: 315
Period size: 86 Copynumber: 2.0 Consensus size: 86
81934747 CCATAGATCG
81934757 AGTTAATGCAATTCTAGGGTGTTAATTAGAAAGAGAATTCAATTATTCAACCTAGGGTTAGACGT
1 AGTTAATGCAATTCTAGGGTGTTAATTAGAAAGAGAATTCAATTATTCAACCTAGGGTTAGACGT
81934822 TATTAGTCTCAAGAGAGATAA
66 TATTAGTCTCAAGAGAGATAA
* *
81934843 AGTTAATGCAATTCTAGGGTGTTAATTAGAAAGAGATTTCAATTATTCAACCTAGGGTTAGATGT
1 AGTTAATGCAATTCTAGGGTGTTAATTAGAAAGAGAATTCAATTATTCAACCTAGGGTTAGACGT
*
81934908 TATTAGTCTCGAGAGAGATA
66 TATTAGTCTCAAGAGAGATA
81934928 TTAATATAAC
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
86 82 1.00
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.33
Consensus pattern (86 bp):
AGTTAATGCAATTCTAGGGTGTTAATTAGAAAGAGAATTCAATTATTCAACCTAGGGTTAGACGT
TATTAGTCTCAAGAGAGATAA
Found at i:81938283 original size:68 final size:68
Alignment explanation
Indices: 81938206--81938341 Score: 272
Period size: 68 Copynumber: 2.0 Consensus size: 68
81938196 AGTTATCTCA
81938206 AAGTAGAATGAATGGTAAGTTAAATACCATGTTATACAAACTTACTAAGCATTTTATGCTTACTT
1 AAGTAGAATGAATGGTAAGTTAAATACCATGTTATACAAACTTACTAAGCATTTTATGCTTACTT
81938271 AGT
66 AGT
81938274 AAGTAGAATGAATGGTAAGTTAAATACCATGTTATACAAACTTACTAAGCATTTTATGCTTACTT
1 AAGTAGAATGAATGGTAAGTTAAATACCATGTTATACAAACTTACTAAGCATTTTATGCTTACTT
81938339 AGT
66 AGT
81938342 TTTATTTCCC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (68 bp):
AAGTAGAATGAATGGTAAGTTAAATACCATGTTATACAAACTTACTAAGCATTTTATGCTTACTT
AGT
Found at i:81957532 original size:67 final size:67
Alignment explanation
Indices: 81957424--81957554 Score: 253
Period size: 67 Copynumber: 2.0 Consensus size: 67
81957414 AATGACACTC
*
81957424 GGCCATGGATGCATCATTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATGAGGATGAGTTC
1 GGCCATGGATGCATCATTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATAAGGATGAGTTC
81957489 TG
66 TG
81957491 GGCCATGGATGCATCATTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATAAGGATGAGTT
1 GGCCATGGATGCATCATTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATAAGGATGAGTT
81957555 AAGATTCGGC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.19, C:0.10, G:0.35, T:0.36
Consensus pattern (67 bp):
GGCCATGGATGCATCATTCTTGGTTGATGTTTGATGTTGTGGTGATGAGGCATAAGGATGAGTTC
TG
Found at i:81957735 original size:50 final size:50
Alignment explanation
Indices: 81957676--81957776 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
81957666 TCCATGTCAG
81957676 TTACTGATTACGAGCGAAAATTTGTTAGACTTAGTAGATACGCTCGGGAA
1 TTACTGATTACGAGCGAAAATTTGTTAGACTTAGTAGATACGCTCGGGAA
81957726 TTACTGATTACGAGCGAAAATTTGTTAGACTTAGTAGATACGCTCGGGAA
1 TTACTGATTACGAGCGAAAATTTGTTAGACTTAGTAGATACGCTCGGGAA
81957776 T
1 T
81957777 GTGTTTCGTC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (50 bp):
TTACTGATTACGAGCGAAAATTTGTTAGACTTAGTAGATACGCTCGGGAA
Found at i:81980432 original size:42 final size:42
Alignment explanation
Indices: 81980369--81980473 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 42
81980359 GTAGCCTAGC
*
81980369 TATGGTCTTACACGGAA-TCTCAT-ATCGATGTCATATCCCAAA
1 TATGGTCTTACAC-AAAGTCTCATAAT-GATGTCATATCCCAAA
* * *
81980411 TATGGTCTTAAACAAAGTCTCATAATGATGTCGTATCCCAGA
1 TATGGTCTTACACAAAGTCTCATAATGATGTCATATCCCAAA
*
81980453 TATGGTCTTACACATAGTCTC
1 TATGGTCTTACACAAAGTCTC
81980474 GTTAACCCTA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
41 2 0.04
42 51 0.93
43 2 0.04
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.32
Consensus pattern (42 bp):
TATGGTCTTACACAAAGTCTCATAATGATGTCATATCCCAAA
Found at i:81990845 original size:27 final size:28
Alignment explanation
Indices: 81990761--81990858 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
81990751 CATGAGATTG
* * *
81990761 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
81990790 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
81990818 GCACTAAGTGTGCGAG-TTGATTTTATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
81990845 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
81990859 GACTTAATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
27 23 0.37
28 21 0.33
29 19 0.30
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:81990871 original size:27 final size:27
Alignment explanation
Indices: 81990789--81990871 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
81990779 TAAATTGTTC
* *
81990789 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* * *
81990817 AGCACTAAGTGTGCGAGTTGATTTTAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
81990844 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
81990871 A
1 A
81990872 TATTTTTGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 28 0.58
28 20 0.42
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:81998550 original size:27 final size:28
Alignment explanation
Indices: 81998495--81998563 Score: 122
Period size: 27 Copynumber: 2.5 Consensus size: 28
81998485 CATGAGATTG
81998495 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
81998523 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
81998550 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
81998564 GACTTAATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.60
28 16 0.40
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:81998577 original size:29 final size:27
Alignment explanation
Indices: 81998495--81998577 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
81998485 CATGAGATTG
* *
81998495 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
81998523 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
81998550 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
81998578 TCTTGAATCA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.47
28 21 0.43
29 5 0.10
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:82003677 original size:26 final size:27
Alignment explanation
Indices: 82003601--82003770 Score: 166
Period size: 27 Copynumber: 6.3 Consensus size: 27
82003591 GATATTATTT
82003601 AAATACCCTCGATTTGTAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTACCG
* * *
82003628 AAATACCCCCGATTTGTGAAATTACTG
1 AAATACCCTCGATTTGTAAAATTACCG
* *
82003655 AAATACCCTCGA-TTGTGAAATTACCA
1 AAATACCCTCGATTTGTAAAATTACCG
* *
82003681 AAATACCCTCAATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCG
* * * *
82003708 AAACAACCC-CTATTTGTAAAATTATCA
1 AAA-TACCCTCGATTTGTAAAATTACCG
* * * *
82003735 AAATATCCTTG-TAATGTAAAATTACAG
1 AAATACCCTCGAT-TTGTAAAATTACCG
82003762 AAATACCCT
1 AAATACCCT
82003771 TGTAGTGTAA
Statistics
Matches: 117, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
26 27 0.23
27 86 0.74
28 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATACCCTCGATTTGTAAAATTACCG
Found at i:82003686 original size:53 final size:54
Alignment explanation
Indices: 82003601--82003739 Score: 167
Period size: 53 Copynumber: 2.6 Consensus size: 54
82003591 GATATTATTT
* * *
82003601 AAATACCCTCGATTTGTAAAATTACCGAAATACCCCCGATTTGTGAAATTACTG
1 AAATACCCTCGATTTGTAAAATTACCAAAATACCCCCAATTTGTAAAATTACTG
* *
82003655 AAATACCCTCGA-TTGTGAAATTACCAAAATACCCTCAATTTGTAAAATTA-TCG
1 AAATACCCTCGATTTGTAAAATTACCAAAATACCCCCAATTTGTAAAATTACT-G
* * *
82003708 AAACAACCC-CTATTTGTAAAATTATCAAAATA
1 AAA-TACCCTCGATTTGTAAAATTACCAAAATA
82003740 TCCTTGTAAT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
52 1 0.01
53 39 0.53
54 33 0.45
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.29
Consensus pattern (54 bp):
AAATACCCTCGATTTGTAAAATTACCAAAATACCCCCAATTTGTAAAATTACTG
Found at i:82003739 original size:80 final size:81
Alignment explanation
Indices: 82003601--82003770 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 81
82003591 GATATTATTT
* * * * *
82003601 AAATACCCTCGATTTGTAAAATTACCGAAATACCCCCGATTTGTGAAATTACTGAAATACCCTCG
1 AAATACCCTCAATTTGTAAAATTACCGAAACAACCCCGATTTGTAAAATTACTAAAATACCCTCG
* *
82003666 -ATTGTGAAATTACCA-
66 TAATGTAAAATTA-CAG
* * * *
82003681 AAATACCCTCAATTTGTAAAATTATCGAAACAACCCCTATTTGTAAAATTA-TCAAAATATCCTT
1 AAATACCCTCAATTTGTAAAATTACCGAAACAACCCCGATTTGTAAAATTACT-AAAATACCCTC
82003745 GTAATGTAAAATTACAG
65 GTAATGTAAAATTACAG
82003762 AAATACCCT
1 AAATACCCT
82003771 TGTAGTGTAA
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
79 1 0.01
80 56 0.74
81 19 0.25
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATACCCTCAATTTGTAAAATTACCGAAACAACCCCGATTTGTAAAATTACTAAAATACCCTCG
TAATGTAAAATTACAG
Found at i:82003771 original size:27 final size:27
Alignment explanation
Indices: 82003722--82003783 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
82003712 AACCCCTATT
*
82003722 TGTAAAATTATCAAAATATCCTTGTAA
1 TGTAAAATTATCAAAATACCCTTGTAA
*
82003749 TGTAAAATTA-CAGAAATACCCTTGTAG
1 TGTAAAATTATCA-AAATACCCTTGTAA
82003776 TGTAAAAT
1 TGTAAAAT
82003784 GACTATTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 2 0.06
27 30 0.94
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.34
Consensus pattern (27 bp):
TGTAAAATTATCAAAATACCCTTGTAA
Found at i:82007999 original size:43 final size:42
Alignment explanation
Indices: 82007909--82008020 Score: 134
Period size: 43 Copynumber: 2.6 Consensus size: 42
82007899 TCTGAACTCA
** * **
82007909 TTGAGTGGTCCGAGTTTGTGATATATGTGGCATCCGAGCTCG
1 TTGAGTGGTCCGAGTTCATAATGGATGTGGCATCCGAGCTCG
* * * *
82007951 TTGAGTGGTCTGAGTTCATTATGGATGTGAGCATCTGAGCTTG
1 TTGAGTGGTCCGAGTTCATAATGGATGTG-GCATCCGAGCTCG
82007994 TTGAGTGGTCCGAGTTCATAATGGATG
1 TTGAGTGGTCCGAGTTCATAATGGATG
82008021 CGATACATGT
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
42 23 0.39
43 36 0.61
ACGTcount: A:0.19, C:0.13, G:0.33, T:0.35
Consensus pattern (42 bp):
TTGAGTGGTCCGAGTTCATAATGGATGTGGCATCCGAGCTCG
Found at i:82011638 original size:15 final size:15
Alignment explanation
Indices: 82011614--82011671 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
82011604 TATGATATTG
82011614 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
*
82011629 TATCTAGGATTTCTT
1 TATCTTGGATTTCTT
* *
82011644 TTTCTTGGACTTCTT
1 TATCTTGGATTTCTT
*
82011659 TATCTTGGTTTTC
1 TATCTTGGATTTC
82011672 ATGTCATCTC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.12, C:0.16, G:0.14, T:0.59
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:82017630 original size:48 final size:47
Alignment explanation
Indices: 82017559--82017700 Score: 187
Period size: 48 Copynumber: 3.0 Consensus size: 47
82017549 TACTCGAAAG
* *
82017559 TCTTGCACCCTAAGTGCCAATATCATGGCCCGAAGCCAACTCAATGAA
1 TCTTGCA-CCGAAGTGCCAATATCATGGCCCAAAGCCAACTCAATGAA
*
82017607 TCTTGCACCGGAAGTGTCC-ATATCATGGCCTAAAGCCAACTCAATGAA
1 TCTTGCACC-GAAGTG-CCAATATCATGGCCCAAAGCCAACTCAATGAA
** *
82017655 TCTCACACTCGAAGTGCCAATATCATGGCCCAAAGCCAACTAAATG
1 TCTTGCAC-CGAAGTGCCAATATCATGGCCCAAAGCCAACTCAATG
82017701 TAACCCCTAA
Statistics
Matches: 83, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
47 4 0.05
48 76 0.92
49 3 0.04
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (47 bp):
TCTTGCACCGAAGTGCCAATATCATGGCCCAAAGCCAACTCAATGAA
Found at i:82019944 original size:20 final size:20
Alignment explanation
Indices: 82019916--82019954 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
82019906 AAACAGGGTT
*
82019916 ACACTCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
*
82019936 ACACGCCCGTGTGGGTTGG
1 ACACGCCCGTGTGGCTTGG
82019955 CCGTATGGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.28, G:0.38, T:0.23
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:82025255 original size:32 final size:32
Alignment explanation
Indices: 82025214--82025279 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
82025204 AACTTGCTAA
82025214 TTAGGACCTTCTAATTTATAATCTAAAGCAAT
1 TTAGGACCTTCTAATTTATAATCTAAAGCAAT
82025246 TTAGGACCTTCTAATTTATAATCTAAAGCAAT
1 TTAGGACCTTCTAATTTATAATCTAAAGCAAT
82025278 TT
1 TT
82025280 CATGCTAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.39
Consensus pattern (32 bp):
TTAGGACCTTCTAATTTATAATCTAAAGCAAT
Found at i:82027694 original size:38 final size:38
Alignment explanation
Indices: 82027651--82027820 Score: 243
Period size: 38 Copynumber: 4.4 Consensus size: 38
82027641 TAAAGATCCA
82027651 CAGGCTTCA-TGCTGGTATTATATCCGAGTTAAATCCCG
1 CAGGCTT-AGTGCTGGTATTATATCCGAGTTAAATCCCG
* *
82027689 CAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCG
1 CAGGCTTAGTGCTGGTATTATATCCGAGTTAAATCCCG
* *
82027727 CAGGCTTAGTGCTGGTATTATAACCGGGTTAAATCCCG
1 CAGGCTTAGTGCTGGTATTATATCCGAGTTAAATCCCG
*
82027765 CAGGCTTAGTGCTGGTATTATATTCGAGCTTAAAGTCCCG
1 CAGGCTTAGTGCTGGTATTATATCCGAG-TTAAA-TCCCG
* *
82027805 CAGGTTTTGTGCTGGT
1 CAGGCTTAGTGCTGGT
82027821 GGCTGGATTC
Statistics
Matches: 120, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 96 0.80
39 5 0.04
40 19 0.16
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (38 bp):
CAGGCTTAGTGCTGGTATTATATCCGAGTTAAATCCCG
Found at i:82027740 original size:76 final size:78
Alignment explanation
Indices: 82027631--82027820 Score: 253
Period size: 76 Copynumber: 2.5 Consensus size: 78
82027621 ATTTGATATG
* * *
82027631 TATCCGGGCTTAAAGAT-CCACAGGCTTCA-TGCTGGTATTATATCCGAGTTAAATCCCGCAGGC
1 TATCCGAGCTTAAAG-TCCCGCAGGCTT-AGTGCTGGTATTATAACCGAGTTAAATCCCGCAGGC
*
82027694 TTCGTGCTGGTATTA
64 TTAGTGCTGGTATTA
* *
82027709 TATCCG-GGTTAAA-TCCCGCAGGCTTAGTGCTGGTATTATAACCGGGTTAAATCCCGCAGGCTT
1 TATCCGAGCTTAAAGTCCCGCAGGCTTAGTGCTGGTATTATAACCGAGTTAAATCCCGCAGGCTT
82027772 AGTGCTGGTATTA
66 AGTGCTGGTATTA
* * *
82027785 TATTCGAGCTTAAAGTCCCGCAGGTTTTGTGCTGGT
1 TATCCGAGCTTAAAGTCCCGCAGGCTTAGTGCTGGT
82027821 GGCTGGATTC
Statistics
Matches: 99, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
75 2 0.02
76 60 0.61
77 12 0.12
78 25 0.25
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.32
Consensus pattern (78 bp):
TATCCGAGCTTAAAGTCCCGCAGGCTTAGTGCTGGTATTATAACCGAGTTAAATCCCGCAGGCTT
AGTGCTGGTATTA
Found at i:82030028 original size:25 final size:25
Alignment explanation
Indices: 82030000--82030094 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 25
82029990 CTCTTTTAAT
* *
82030000 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* *
82030025 AACTAGGGCAAAGCCCTTTACGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
82030050 AACTGGGGCATAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
82030075 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
82030095 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:82030172 original size:11 final size:11
Alignment explanation
Indices: 82030141--82030188 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
82030131 ATATGAATAC
82030141 ATCATGTGCAT
1 ATCATGTGCAT
*
82030152 ATCA--TACAT
1 ATCATGTGCAT
82030161 ATCATGTGCAT
1 ATCATGTGCAT
*
82030172 ATCATGT-CAA
1 ATCATGTGCAT
82030182 ATCATGT
1 ATCATGT
82030189 ATATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:82031871 original size:21 final size:21
Alignment explanation
Indices: 82031830--82031871 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
82031820 AAGAAAGGAA
* **
82031830 ATAATAAAAGAAATACTAAGG
1 ATAATAAAAGAAAAAAAAAGG
82031851 ATAATAAAAGAAAAAAAAAGG
1 ATAATAAAAGAAAAAAAAAGG
82031872 GTTATTACCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.69, C:0.02, G:0.14, T:0.14
Consensus pattern (21 bp):
ATAATAAAAGAAAAAAAAAGG
Found at i:82040669 original size:44 final size:44
Alignment explanation
Indices: 82040615--82041147 Score: 339
Period size: 44 Copynumber: 12.1 Consensus size: 44
82040605 TATCCAAGAT
* *
82040615 GATTTGGCATCTTTGTATTGTCAGAGAGCAAATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCCAAGATAGCA
* * * *
82040659 GATTTGGCATCTCTGTATTGTCAGAGAGCATATCGATGATAACA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCCAAGATAGCA
* * * *
82040703 GATTTGGCATCTCTGTACTGTCAGAGAGCAGATCGAAAATAGCA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCCAAGATAGCA
* * * * *
82040747 GATTTAGCATCTCTGTATTGTCAGAGAGCAGATCGAATATAGTA
1 GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCCAAGATAGCA
* * *
82040791 GATTAGGCATCT-TCGTATTTTGACGAAGAGCAAATCCAAGA-AGCA
1 GATTTGGCATCTCT-GTATTGTCA-G-AGAGCAAATCCAAGATAGCA
* * * * *
82040836 GATTTGGCATCTCTGTACTCGACGGGGAGCAGATCCAAGAT----
1 GATTTGGCATCTCTGTA-TTGTCAGAGAGCAAATCCAAGATAGCA
* *
82040877 GATTTGGCATCT-TCGTATT-TGACGAGGAGAAAATCCAAGA-AGCA
1 GATTTGGCATCTCT-GTATTGTCA-GA-GAGCAAATCCAAGATAGCA
* * * * *
82040921 GATTTGGCATCTCCGTATTTGACAGGGAGCAGATCCAAG---G-T
1 GATTTGGCATCTCTGTA-TTGTCAGAGAGCAAATCCAAGATAGCA
* *
82040962 GATTTGGCATCT-TCGTATTCGAC-GAGGAGTAAATCCAAGA-AGCA
1 GATTTGGCATCTCT-GTATT-GTCAGA-GAGCAAATCCAAGATAGCA
* ** * * * * *
82041006 GATTTGGCATCCCCATATTTGACGGGGAGCAGATCCAAGAT-GATA
1 GATTTGGCATCTCTGTA-TTGTCAGAGAGCAAATCCAAGATAG-CA
* * * * *
82041051 GATTTGGCATCTCCGTATTCGACGGGGAGCAAAACCAAGA-AG-A
1 GATTTGGCATCTCTGTATT-GTCAGAGAGCAAATCCAAGATAGCA
* * *
82041094 TGATTTGGCATCTCTGTATTTGACAGGGAGCAAATCGAAGATATAGCA
1 -GATTTGGCATCTCTGTA-TTGTCAGAGAGCAAATCCAAG--ATAGCA
82041142 GATTTG
1 GATTTG
82041148 ACCTTTGTCG
Statistics
Matches: 391, Mismatches: 63, Indels: 67
0.75 0.12 0.13
Matches are distributed among these distances:
40 6 0.02
41 56 0.14
42 1 0.00
43 3 0.01
44 238 0.61
45 62 0.16
46 16 0.04
47 8 0.02
48 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGTCAGAGAGCAAATCCAAGATAGCA
Found at i:82040918 original size:85 final size:85
Alignment explanation
Indices: 82040601--82041135 Score: 451
Period size: 85 Copynumber: 6.2 Consensus size: 85
82040591 TTTATGCTGA
* * * * *
82040601 AGCATATCCAAGATGATTTGGCATCTTTGTATT-GTC-AGAGAGCAAATCGAAGATAGCAGATTT
1 AGCAGATCCAAGATGATTTGGCATCTTCGTATTCGACGAG-GAGAAAATCCAAGA-AGCAGATTT
* * *
82040664 GGCATCTCTGTA-TTGTCAGAG
64 GGCATCTCCGTATTTGACAGGG
* * * * * * *
82040685 AGCATATCGATGATAACAGATTTGGCATC-TCTGTACTGTC-A-GA-GAGCAGATCGAAAATAGC
1 AGCAGATCCAAGAT----GATTTGGCATCTTC-GTA-T-TCGACGAGGAGAAAATCCAAGA-AGC
* * * *
82040746 AGATTTAGCATCTCTGTA-TTGTCAGAG
58 AGATTTGGCATCTCCGTATTTGACAGGG
* * * * * *
82040773 AGCAGATCGAATATAGTAGATTAGGCATCTTCGTATTTTGACGAAGAGCAAATCCAAGAAGCAGA
1 AGCAGATC-CA-AGA-T-GATTTGGCATCTTCGTA-TTCGACGAGGAGAAAATCCAAGAAGCAGA
* * * *
82040838 TTTGGCATCTCTGTACTCGACGGGG
61 TTTGGCATCTCCGTATTTGACAGGG
*
82040863 AGCAGATCCAAGATGATTTGGCATCTTCGTATTTGACGAGGAGAAAATCCAAGAAGCAGATTTGG
1 AGCAGATCCAAGATGATTTGGCATCTTCGTATTCGACGAGGAGAAAATCCAAGAAGCAGATTTGG
82040928 CATCTCCGTATTTGACAGGG
66 CATCTCCGTATTTGACAGGG
* *
82040948 AGCAGATCCAAGGTGATTTGGCATCTTCGTATTCGACGAGGAGTAAATCCAAGAAGCAGATTTGG
1 AGCAGATCCAAGATGATTTGGCATCTTCGTATTCGACGAGGAGAAAATCCAAGAAGCAGATTTGG
* * *
82041013 CATCCCCATATTTGACGGGG
66 CATCTCCGTATTTGACAGGG
* *
82041033 AGCAGATCCAAGATGATAGATTTGGCATCTCCGTATTCGACGGGGAGCAAAA-CCAAGAAG-ATG
1 AGCAGATCC-A-A-GAT-GATTTGGCATCTTCGTATTCGACGAGGAG-AAAATCCAAGAAGCA-G
*
82041096 ATTTGGCATCTCTGTATTTGACAGGG
60 ATTTGGCATCTCCGTATTTGACAGGG
* *
82041122 AGCAAATCGAAGAT
1 AGCAGATCCAAGAT
82041136 ATAGCAGATT
Statistics
Matches: 381, Mismatches: 47, Indels: 44
0.81 0.10 0.09
Matches are distributed among these distances:
84 12 0.03
85 136 0.36
86 20 0.05
87 5 0.01
88 85 0.22
89 92 0.24
90 30 0.08
91 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (85 bp):
AGCAGATCCAAGATGATTTGGCATCTTCGTATTCGACGAGGAGAAAATCCAAGAAGCAGATTTGG
CATCTCCGTATTTGACAGGG
Found at i:82040925 original size:174 final size:175
Alignment explanation
Indices: 82040743--82041132 Score: 499
Period size: 174 Copynumber: 2.2 Consensus size: 175
82040733 GATCGAAAAT
* * *
82040743 AGCAGATTTAGCATCTCTGTA-TTGTCAGAGAGCAGATCGAATATAGTAGATTAGGCATCTTCGT
1 AGCAGATTTGGCATCTCTGTATTTGACAGGGAGCAGATCGAA-A-AGT-GATTAGGCATCTTCGT
* * **
82040807 ATTTTGACGAAGAGCAAATCCAAGAAGCAGATTTGGCATCTCTGTACTCGACGGGGAGCAGATCC
63 A-TTCGACGAAGAGCAAATCCAAGAAGCAGATTTGGCATCCCCATACTCGACGGGGAGCAGATCC
* *
82040872 -A-A-GAT-GATTTGGCATCTTCGTATTTGACGAGGAG-AAAATCCAAGA
127 AAGATGATAGATTTGGCATCTCCGTATTCGACGAGGAGCAAAA-CCAAGA
* * * *
82040917 AGCAGATTTGGCATCTCCGTATTTGACAGGGAGCAGATC-CAAGGTGATTTGGCATCTTCGTATT
1 AGCAGATTTGGCATCTCTGTATTTGACAGGGAGCAGATCGAAAAGTGATTAGGCATCTTCGTATT
* * * *
82040981 CGACGAGGAGTAAATCCAAGAAGCAGATTTGGCATCCCCATATTTGACGGGGAGCAGATCCAAGA
66 CGACGAAGAGCAAATCCAAGAAGCAGATTTGGCATCCCCATACTCGACGGGGAGCAGATCCAAGA
*
82041046 TGATAGATTTGGCATCTCCGTATTCGACGGGGAGCAAAACCAAGA
131 TGATAGATTTGGCATCTCCGTATTCGACGAGGAGCAAAACCAAGA
*
82041091 AG-ATGATTTGGCATCTCTGTATTTGACAGGGAGCAAATCGAA
1 AGCA-GATTTGGCATCTCTGTATTTGACAGGGAGCAGATCGAA
82041133 GATATAGCAG
Statistics
Matches: 187, Mismatches: 21, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
170 55 0.29
171 17 0.09
172 3 0.02
173 5 0.03
174 87 0.47
175 20 0.11
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (175 bp):
AGCAGATTTGGCATCTCTGTATTTGACAGGGAGCAGATCGAAAAGTGATTAGGCATCTTCGTATT
CGACGAAGAGCAAATCCAAGAAGCAGATTTGGCATCCCCATACTCGACGGGGAGCAGATCCAAGA
TGATAGATTTGGCATCTCCGTATTCGACGAGGAGCAAAACCAAGA
Found at i:82041259 original size:80 final size:79
Alignment explanation
Indices: 82041090--82041270 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 79
82041080 CAAAACCAAG
* * * * * *
82041090 AAGATGATTT-GGCATCTCTGTATTTGACAGGGAGCAAATCGAAGATATAGCAGATTTGACCTTT
1 AAGATGATTTGGGCATCTCTGTAATGGACAGGGAGCAAATCAAAGACATAGCAGATCTGACCTTC
* *
82041154 GTCGAGGCAGATCC
66 ATCAAGGCAGATCC
*
82041168 AAGATGATTTGGGCATCCCTGTAATGGAC-GGAGAGCAAATCAAAGACATTAGTC-GATCTGACC
1 AAGATGATTTGGGCATCTCTGTAATGGACAGG-GAGCAAATCAAAGACA-TAG-CAGATCTGACC
* *
82041231 TTCATCAAGGCTGATTC
63 TTCATCAAGGCAGATCC
*
82041248 AAGATGATTTGGGCGTCTCTGTA
1 AAGATGATTTGGGCATCTCTGTA
82041271 TTCAACGGGA
Statistics
Matches: 86, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
78 12 0.14
79 29 0.34
80 44 0.51
81 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (79 bp):
AAGATGATTTGGGCATCTCTGTAATGGACAGGGAGCAAATCAAAGACATAGCAGATCTGACCTTC
ATCAAGGCAGATCC
Found at i:82041441 original size:18 final size:18
Alignment explanation
Indices: 82041418--82041452 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
82041408 TAAAAAAATT
*
82041418 AAAAAATGAAATTAAACG
1 AAAAAATAAAATTAAACG
82041436 AAAAAATAAAATTAAAC
1 AAAAAATAAAATTAAAC
82041453 AGTCCATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.17
Consensus pattern (18 bp):
AAAAAATAAAATTAAACG
Found at i:82053472 original size:44 final size:44
Alignment explanation
Indices: 82053409--82053739 Score: 434
Period size: 44 Copynumber: 7.5 Consensus size: 44
82053399 NNNNNNNNNN
* * *
82053409 AAGATAGCAAATTTGGCGTCTCTGTATTGTCAGAGAGCAGATTG
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
*
82053453 AAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC-GAATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAG-ATCG
* *
82053497 AAGATAGCAAATTTGGCATCTCTGTATTGTTAGAGAGCAGATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
* * **
82053541 AAGATAGCAGATTTGACATCTCAGTATTGTCAGAGAATAGATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
* *
82053585 AAGATAGCAGATTTGGCATCTCTGTATTATCAGAGAGCAGATCA
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
*
82053629 AAGATAGCAGATTTGCCATCTCTGTATTGTCAGAGAGCAGATCG
1 AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
* * * * *
82053673 AAGATAGTAGATTTGGCATCT-TCGTATTTTGACGAGGAGCAAATCC
1 AAGATAGCAGATTTGGCATCTCT-GTATTGTCA-GA-GAGCAGATCG
*
82053719 AAGA-AGCAAATTTGGCATCTC
1 AAGATAGCAGATTTGGCATCTC
82053740 CAGATCCAAG
Statistics
Matches: 253, Mismatches: 28, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
43 2 0.01
44 222 0.88
45 17 0.07
46 12 0.05
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (44 bp):
AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCG
Found at i:82054046 original size:18 final size:18
Alignment explanation
Indices: 82054023--82054057 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
82054013 TAAAAAAATT
82054023 AAAAAATAAAATTAAACG
1 AAAAAATAAAATTAAACG
82054041 AAAAAATAAAATTAAAC
1 AAAAAATAAAATTAAAC
82054058 AGTCCATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.17
Consensus pattern (18 bp):
AAAAAATAAAATTAAACG
Found at i:82054676 original size:18 final size:18
Alignment explanation
Indices: 82054645--82054682 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
82054635 AAAGGTGATA
*
82054645 TTTTGTTTATTGTTATTTT
1 TTTTGTTTACTGTT-TTTT
82054664 TTTTGTTT-CTGTTTTTT
1 TTTTGTTTACTGTTTTTT
82054681 TT
1 TT
82054683 CAATACATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 4 0.22
19 8 0.44
ACGTcount: A:0.05, C:0.03, G:0.11, T:0.82
Consensus pattern (18 bp):
TTTTGTTTACTGTTTTTT
Found at i:82055363 original size:25 final size:22
Alignment explanation
Indices: 82055305--82055365 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 22
82055295 TTAATCCTTT
*
82055305 TTTATATATTTCTAAATTTTTTA
1 TTTATTTATTT-TAAATTTTTTA
82055328 TTTATTTATTTTAAATATTTTATA
1 TTTATTTATTTTAAAT-TTTT-TA
82055352 TATTATTTATTTTA
1 T-TTATTTATTTTA
82055366 CTATAAACAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
22 5 0.15
23 14 0.41
24 3 0.09
25 12 0.35
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTATTTATTTTAAATTTTTTA
Found at i:82055478 original size:29 final size:30
Alignment explanation
Indices: 82055392--82055508 Score: 96
Period size: 33 Copynumber: 3.7 Consensus size: 30
82055382 TATATAAAAA
*
82055392 ATTATTTATCGTATATTATTT-TATTATATAT
1 ATTATTTAT--TATGTTATTTATATTATATAT
*
82055423 -TTATATTATTATGTTATGTTGTCTATTATATAT
1 ATTAT-TTATTATGTTA--TT-TATATTATATAT
*
82055456 ATTATCTATTAT-TTATTTATATTTTATCATAT
1 ATTATTTATTATGTTATTTATA--TTAT-ATAT
*
82055488 ATTATTTATTATGTTGTTTAT
1 ATTATTTATTATGTTATTTAT
82055509 CTTTATCTTT
Statistics
Matches: 71, Mismatches: 5, Indels: 18
0.76 0.05 0.19
Matches are distributed among these distances:
29 9 0.13
30 6 0.08
31 10 0.14
32 19 0.27
33 23 0.32
34 4 0.06
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.62
Consensus pattern (30 bp):
ATTATTTATTATGTTATTTATATTATATAT
Found at i:82058791 original size:26 final size:23
Alignment explanation
Indices: 82058741--82058795 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
82058731 GTGAGGGAAC
*
82058741 ACCAGTTATTAACAACACGCTGA
1 ACCAGTTATTAACAACACGATGA
*
82058764 ACCATTTATTAACAACACATGATGGA
1 ACCAGTTATTAACAACAC--GAT-GA
82058790 ACCAGT
1 ACCAGT
82058796 CAAGGTTACT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 17 0.65
25 2 0.08
26 7 0.27
ACGTcount: A:0.40, C:0.24, G:0.13, T:0.24
Consensus pattern (23 bp):
ACCAGTTATTAACAACACGATGA
Found at i:82058941 original size:22 final size:21
Alignment explanation
Indices: 82058916--82058957 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
82058906 CTATTATTAG
82058916 GCCCACACCCAAAAATTAAAAA
1 GCCCACACCCAAAAA-TAAAAA
* *
82058938 GCCCATACCCAATAATAAAA
1 GCCCACACCCAAAAATAAAA
82058958 TAAAACAGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.52, C:0.31, G:0.05, T:0.12
Consensus pattern (21 bp):
GCCCACACCCAAAAATAAAAA
Found at i:82062496 original size:42 final size:42
Alignment explanation
Indices: 82062395--82062554 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 42
82062385 AGCTCGTACA
* * * * *
82062395 ATGCCAACGTCCCAGACGTGGTCTTACATG-TAATCAAATATTG
1 ATGCCAACATCCCAGACG-GGTCTTACACGAAAATCAAA-GTCG
*
82062438 ATGCC-ACTGTCCCAGACAGGGTCTTACAC-AAAATC-AAGTACG
1 ATGCCAAC-ATCCCAGAC-GGGTCTTACACGAAAATCAAAGT-CG
* * * *
82062480 ATGCTAACATCCCAGACCTGGTATTACACGTAAATCATAAGTCG
1 ATGCCAACATCCCAGA-CGGGTCTTACACGAAAATCA-AAGTCG
82062524 ATGCCAACATCCCAGACGTGGTCTTACACGA
1 ATGCCAACATCCCAGACG-GGTCTTACACGA
82062555 TAACACATAT
Statistics
Matches: 94, Mismatches: 13, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
41 1 0.01
42 25 0.27
43 36 0.38
44 28 0.30
45 4 0.04
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCAACATCCCAGACGGGTCTTACACGAAAATCAAAGTCG
Found at i:82068309 original size:76 final size:75
Alignment explanation
Indices: 82068181--82068329 Score: 201
Period size: 76 Copynumber: 2.0 Consensus size: 75
82068171 GGAAAATCAA
* * * * *
82068181 GATTATTCCATTATTAATAAAGAAGACAAATGGGAAGCTAGAAACAGAAATTATATTCTTTGCAA
1 GATTATTCCATTATTAATAAAAAAAACAAATGGAAAGCTAGAAACAAAAATTATATTCTTTCCAA
82068246 AAGAATATAT
66 AAGAATATAT
* * *
82068256 GATTATTCCCTTGTTAATAGAAAAAAACAAATGGAAAGTTAGAAA-AAATAATTATATTCTTTCC
1 GATTATTCCATTATTAATA-AAAAAAACAAATGGAAAGCTAGAAACAAA-AATTATATTCTTTCC
82068320 AAAAGAATAT
64 AAAAGAATAT
82068330 TAATTCCCAT
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
75 19 0.30
76 45 0.70
ACGTcount: A:0.48, C:0.09, G:0.13, T:0.30
Consensus pattern (75 bp):
GATTATTCCATTATTAATAAAAAAAACAAATGGAAAGCTAGAAACAAAAATTATATTCTTTCCAA
AAGAATATAT
Found at i:82068589 original size:137 final size:136
Alignment explanation
Indices: 82068304--82068717 Score: 636
Period size: 137 Copynumber: 3.0 Consensus size: 136
82068294 TTAGAAAAAA
* * *
82068304 TAATTATATTCTTTCCAAAAGAATATTAATTCCCATATCTTTTATATATTGACTGAAATTAATTA
1 TAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTA
*
82068369 ATATAA--TTTTATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATAAAATTC
66 ATATAATTTTTTATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAAATTC
*
82068432 ATACAT
131 ATATAT
* * *
82068438 TAATTATATTCTTTCCTAAAGAATATTAATTTCCATGTCTTTTATGTTTTGACTGAAAGTAATTA
1 TAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTA
82068503 ATATAATTTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 ATATAATTTTT-TATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAAATT
82068568 CATATAT
130 CATATAT
* * * * * *
82068575 TGATTATATACTTTCCAAAATAATATTAATTTTCACGTCTTTTATATTTTGACCGAAATTAATTA
1 TAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTA
*
82068640 ATATAATTATTTTCATTAATAAATTC-AGTAAAATATATACAATTAATATTTTCTATGAATCAAA
66 ATATAATT-TTTT-ATTAATAAATTCGA-TAAAATATATACAATTAATATTTTGTATGAATCAAA
82068704 TTCATATAT
128 TTCATATAT
82068713 TAATT
1 TAATT
82068718 TTATCTATGT
Statistics
Matches: 255, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
134 65 0.25
136 3 0.01
137 124 0.49
138 63 0.25
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (136 bp):
TAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTA
ATATAATTTTTTATTAATAAATTCGATAAAATATATACAATTAATATTTTGTATGAATCAAATTC
ATATAT
Found at i:82070574 original size:44 final size:44
Alignment explanation
Indices: 82070525--82070642 Score: 148
Period size: 44 Copynumber: 2.7 Consensus size: 44
82070515 ATCAAGTACG
* * *
82070525 ATGCCAACATCCTAGACATGGACTTACACGTAAATCATAAGTCA
1 ATGCCAACGTCCTAGACGTGGTCTTACACGTAAATCATAAGTCA
* * **
82070569 ATGCCAATGT-CTCAGACGTGGTCTTACATGTAAATCATAAGTTG
1 ATGCCAACGTCCT-AGACGTGGTCTTACACGTAAATCATAAGTCA
*
82070613 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCTAGACGTGGTCTTACACG
82070643 ATAACACATA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
43 2 0.03
44 59 0.95
45 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCTAGACGTGGTCTTACACGTAAATCATAAGTCA
Found at i:82081621 original size:75 final size:74
Alignment explanation
Indices: 82081517--82081663 Score: 249
Period size: 75 Copynumber: 2.0 Consensus size: 74
82081507 GGAAAATCAA
*
82081517 GATTATTCCATTATTAAAGAGAAGGCAAATGGAAAGTTAGAAAAAGAAATTATATTCTTTCCAAA
1 GATTATTCCATTATTAAAGAGAAGACAAATGGAAAGTTAGAAAAAGAAATTATATTCTTTCCAAA
82081582 AGAATATAT
66 AGAATATAT
* * *
82081591 GATTATTCCTTTGTTAATAGAGAAGACAAATGGAAAGTTAGAAAAAGGAATTATATTCTTTCCAA
1 GATTATTCCATTATTAA-AGAGAAGACAAATGGAAAGTTAGAAAAAGAAATTATATTCTTTCCAA
82081656 AAGAATAT
65 AAGAATAT
82081664 TAATTTCCAT
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
74 15 0.22
75 53 0.78
ACGTcount: A:0.46, C:0.08, G:0.16, T:0.31
Consensus pattern (74 bp):
GATTATTCCATTATTAAAGAGAAGACAAATGGAAAGTTAGAAAAAGAAATTATATTCTTTCCAAA
AGAATATAT
Found at i:82081917 original size:138 final size:136
Alignment explanation
Indices: 82081639--82081922 Score: 412
Period size: 138 Copynumber: 2.1 Consensus size: 136
82081629 TAGAAAAAGG
* *
82081639 AATTATATTCTTTCCAAAAGAATATTAATTTCCATATCTTTTATATATTGACTAAAATTAATTAA
1 AATTATATCCTTTCCAAAAGAATATTAATTTCCATA-CTTTTATATATTGACCAAAATTAATTAA
*
82081704 TATAATTTTTATTTTAATAAATTCGATAAAATATATAAAATTAATATTTTGTATGAATCAAATTC
65 TATAATTTTTATTTTAATAAATTAGATAAAATATATAAAATTAATATTTTGTATGAATCAAATTC
82081769 ATATATT
130 ATATATT
* * *
82081776 AATTATATCCTTTCCAAAATAATATTAACTTTCACGTA-TTTTATATTTTGACCAAAATTAATTA
1 AATTATATCCTTTCCAAAAGAATATTAA-TTTC-CATACTTTTATATATTGACCAAAATTAATTA
*
82081840 ATATAATTATTT-TTATTAATAAATTTAG-TAAAATATATACAATTAATATTTTGTATGAATCAA
64 ATATAATT-TTTATT-TTAATAAA-TTAGATAAAATATATAAAATTAATATTTTGTATGAATCAA
*
82081903 ATTTATATATT
126 ATTCATATATT
*
82081914 AATTTTATC
1 AATTATATC
82081923 TATGTTCTCT
Statistics
Matches: 133, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
137 60 0.45
138 67 0.50
139 6 0.05
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (136 bp):
AATTATATCCTTTCCAAAAGAATATTAATTTCCATACTTTTATATATTGACCAAAATTAATTAAT
ATAATTTTTATTTTAATAAATTAGATAAAATATATAAAATTAATATTTTGTATGAATCAAATTCA
TATATT
Found at i:82084741 original size:16 final size:18
Alignment explanation
Indices: 82084703--82084741 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
82084693 TATTTAATCA
*
82084703 CTTTTACAAGTTTTGTAC
1 CTTTTACAAGTTTAGTAC
82084721 CTTTTACAA-TTTAGT-C
1 CTTTTACAAGTTTAGTAC
82084737 CTTTT
1 CTTTT
82084742 TAATTAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 6 0.30
17 5 0.25
18 9 0.45
ACGTcount: A:0.21, C:0.18, G:0.08, T:0.54
Consensus pattern (18 bp):
CTTTTACAAGTTTAGTAC
Found at i:82087587 original size:43 final size:43
Alignment explanation
Indices: 82087526--82087612 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
82087516 TTGGCACATC
* *
82087526 ACACTCTTTAACTTTTAGCTGATAATACCCAGATCTAAGATCT
1 ACACTCTTTAACTTTTAGCTAATAATACCCAAATCTAAGATCT
* *
82087569 ACACTCTTTAACTTTTAGCTAATAATGCCTAAATCTAAGATCT
1 ACACTCTTTAACTTTTAGCTAATAATACCCAAATCTAAGATCT
82087612 A
1 A
82087613 TCTTTGAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (43 bp):
ACACTCTTTAACTTTTAGCTAATAATACCCAAATCTAAGATCT
Found at i:82088366 original size:18 final size:18
Alignment explanation
Indices: 82088329--82088362 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
82088319 GACGTGGTGT
*
82088329 TTTTGAAAAACAGTTATC
1 TTTTGAAAAACACTTATC
82088347 TTTT-AAAAACACTTAT
1 TTTTGAAAAACACTTAT
82088363 TCTTCTTACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (18 bp):
TTTTGAAAAACACTTATC
Found at i:82089189 original size:27 final size:27
Alignment explanation
Indices: 82089082--82089188 Score: 148
Period size: 27 Copynumber: 4.0 Consensus size: 27
82089072 TAGGGCAAAT
*
82089082 CAGTCATTTTACATTATAGGGGTATTA
1 CAGTCATTTTACCTTATAGGGGTATTA
82089109 CAGTCATTTTATCC-TATAGGGGTATTA
1 CAGTCATTTTA-CCTTATAGGGGTATTA
*
82089136 CAGTCATTTTACCTTATAGGGGTATTT
1 CAGTCATTTTACCTTATAGGGGTATTA
82089163 C-GATCATTTTACCCTT-TAGGGGTATT
1 CAG-TCATTTTA-CCTTATAGGGGTATT
82089189 TTGGCCATTT
Statistics
Matches: 74, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
26 3 0.04
27 66 0.89
28 5 0.07
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (27 bp):
CAGTCATTTTACCTTATAGGGGTATTA
Found at i:82089197 original size:27 final size:26
Alignment explanation
Indices: 82089084--82089200 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 26
82089074 GGGCAAATCA
* * *
82089084 GTCATTTTACATTATAGGGGTATTACA
1 GTCATTTTACCTT-TAGGGGTATTTCG
* * *
82089111 GTCATTTTATCCTATAGGGGTATTACA
1 GTCATTTTA-CCTTTAGGGGTATTTCG
82089138 GTCATTTTACCTTATAGGGGTATTTCG
1 GTCATTTTACCTT-TAGGGGTATTTCG
* *
82089165 ATCATTTTACCCTTTAGGGGTATTTTG
1 GTCATTTTA-CCTTTAGGGGTATTTCG
*
82089192 GCCATTTTA
1 GTCATTTTA
82089201 GCCTAATATT
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
26 3 0.04
27 69 0.88
28 6 0.08
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.44
Consensus pattern (26 bp):
GTCATTTTACCTTTAGGGGTATTTCG
Found at i:82093422 original size:31 final size:31
Alignment explanation
Indices: 82093387--82093459 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
82093377 CAATTCAGTA
* *
82093387 ACCATCAATCATTCATATTGAAAATGTACTT
1 ACCATCAATCATTCACATTCAAAATGTACTT
82093418 ACCATCAATCATTCACATTCAAAATGTACTT
1 ACCATCAATCATTCACATTCAAAATGTACTT
*
82093449 A-AATCAATCAT
1 ACCATCAATCAT
82093460 ACAAAGTCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 9 0.23
31 30 0.77
ACGTcount: A:0.41, C:0.22, G:0.04, T:0.33
Consensus pattern (31 bp):
ACCATCAATCATTCACATTCAAAATGTACTT
Found at i:82094393 original size:27 final size:27
Alignment explanation
Indices: 82094363--82094416 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
82094353 TAAGAAATAG
*
82094363 AAAATGAAATAGAGTAAGCTTATAGCT
1 AAAATGAAACAGAGTAAGCTTATAGCT
*
82094390 AAAATGGAACAGAGTAAGCTTATAGCT
1 AAAATGAAACAGAGTAAGCTTATAGCT
82094417 CAGTAACCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.46, C:0.09, G:0.20, T:0.24
Consensus pattern (27 bp):
AAAATGAAACAGAGTAAGCTTATAGCT
Found at i:82094804 original size:24 final size:24
Alignment explanation
Indices: 82094759--82094849 Score: 100
Period size: 24 Copynumber: 3.9 Consensus size: 24
82094749 AAGCTATTCA
**
82094759 TGAGCTGATAAACAGTAAGCTCTAT
1 TGAGCTGA-AAATGGTAAGCTCTAT
82094784 TGAGCTGAAAATGGTAAGCTCTAT
1 TGAGCTGAAAATGGTAAGCTCTAT
*
82094808 TGAGCTGAACA--GTAAGCTCT-T
1 TGAGCTGAAAATGGTAAGCTCTAT
*
82094829 TCGAGCTG-AATTGGTAAGCTC
1 T-GAGCTGAAAATGGTAAGCTC
82094850 CAAGTGAGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
21 3 0.05
22 15 0.26
23 8 0.14
24 24 0.41
25 8 0.14
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (24 bp):
TGAGCTGAAAATGGTAAGCTCTAT
Found at i:82094827 original size:46 final size:47
Alignment explanation
Indices: 82094759--82094882 Score: 146
Period size: 46 Copynumber: 2.6 Consensus size: 47
82094749 AAGCTATTCA
* *
82094759 TGAGCTGATAAACAGTAAGCTCTATT-GAGCTGAAAATGGTAAGCT-CTAT
1 TGAGCT-A-AAACAGTAAGCTCT-TTCGAGCTG-AAATGGTAAGCTCCAAG
* *
82094808 TGAGCT-GAACAGTAAGCTCTTTCGAGCTGAATTGGTAAGCTCCAAG
1 TGAGCTAAAACAGTAAGCTCTTTCGAGCTGAAATGGTAAGCTCCAAG
*
82094854 TGAGCTAAAACAGTAAGCTCTTACGAGCT
1 TGAGCTAAAACAGTAAGCTCTTTCGAGCT
82094883 ATGGTGAGTC
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
45 13 0.20
46 27 0.41
47 20 0.30
49 6 0.09
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (47 bp):
TGAGCTAAAACAGTAAGCTCTTTCGAGCTGAAATGGTAAGCTCCAAG
Found at i:82100593 original size:53 final size:54
Alignment explanation
Indices: 82100525--82100731 Score: 227
Period size: 53 Copynumber: 3.8 Consensus size: 54
82100515 TTTCCTTTTA
* * *
82100525 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
82100578 AACTCACCATTGCCATGCCTTGGCATGATCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAG
** * * ** * * * *
82100632 TAGTTTATCACTGCCATATCTTGGCATGGTCTTACATGATTTCCTAGCCTTGTAG
1 -AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAG
* *
82100687 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
82100732 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 45 0.37
54 36 0.30
55 40 0.33
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (54 bp):
AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:82107830 original size:16 final size:16
Alignment explanation
Indices: 82107805--82107841 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
82107795 AAAGAAAGGG
*
82107805 AGTAAGAATAAAGCTT
1 AGTAAAAATAAAGCTT
82107821 AGTAAAAATAAAGCTT
1 AGTAAAAATAAAGCTT
82107837 AGTAA
1 AGTAA
82107842 GTTTGCATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.54, C:0.05, G:0.16, T:0.24
Consensus pattern (16 bp):
AGTAAAAATAAAGCTT
Found at i:82108204 original size:54 final size:54
Alignment explanation
Indices: 82108026--82108204 Score: 207
Period size: 55 Copynumber: 3.3 Consensus size: 54
82108016 CTTGACACGA
* * *
82108026 TCTTACGTGGTATCCTTGCCTTAT-GAACTCACCATTGCCATGCCTTGGCATGG
1 TCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGGCATGG
* * ** * * *
82108079 TCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATGCCATGTCTTGACATGG
1 TCTTACATGGTATCCTTGCCTTATAG-AACTTACCAATGCCATGCCTTGGCATGG
* * * *
82108134 TCTTACATGATTTCCTTGCCTTGTAGAACTTACCAATGCCATGCCTTGGCATAG
1 TCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGGCATGG
*
82108188 TCTTACTTGGTATCCTT
1 TCTTACATGGTATCCTT
82108205 AAACCCTAAT
Statistics
Matches: 100, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 21 0.21
54 37 0.37
55 42 0.42
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
TCTTACATGGTATCCTTGCCTTATAGAACTTACCAATGCCATGCCTTGGCATGG
Found at i:82112391 original size:24 final size:24
Alignment explanation
Indices: 82112349--82112452 Score: 92
Period size: 24 Copynumber: 4.4 Consensus size: 24
82112339 AAGCTATTCA
82112349 TGAGCTGATAAAC-AGTAAGCTCTAT
1 TGAGCTGA-AAACGA-TAAGCTCTAT
82112374 TGAGCTGAAAACGATAAGCTCTAT
1 TGAGCTGAAAACGATAAGCTCTAT
* *
82112398 TGAGCTGAATA-G-TAAGTTCT-T
1 TGAGCTGAAAACGATAAGCTCTAT
* * * *
82112419 TCAAGCTG-AATCGCTAAGCTCTAG
1 T-GAGCTGAAAACGATAAGCTCTAT
82112443 TGAGCTGAAA
1 TGAGCTGAAA
82112453 CAGTAAGCTC
Statistics
Matches: 65, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
21 3 0.05
22 13 0.20
23 13 0.20
24 27 0.42
25 9 0.14
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (24 bp):
TGAGCTGAAAACGATAAGCTCTAT
Found at i:82112471 original size:23 final size:23
Alignment explanation
Indices: 82112349--82112463 Score: 103
Period size: 23 Copynumber: 4.9 Consensus size: 23
82112339 AAGCTATTCA
82112349 TGAGCTGATAAACAGTAAGCTCTAT
1 TGAGCTG--AAACAGTAAGCTCTAT
82112374 TGAGCTGAAA-ACGATAAGCTCTAT
1 TGAGCTGAAACA-G-TAAGCTCTAT
* *
82112398 TGAGCTG-AATAGTAAGTTCT-T
1 TGAGCTGAAACAGTAAGCTCTAT
* * *
82112419 TCAAGCTGAATC-GCTAAGCTCTAG
1 T-GAGCTGAAACAG-TAAGCTCTAT
82112443 TGAGCTGAAACAGTAAGCTCT
1 TGAGCTGAAACAGTAAGCTCT
82112464 TACGAGCTAT
Statistics
Matches: 74, Mismatches: 8, Indels: 18
0.74 0.08 0.18
Matches are distributed among these distances:
21 2 0.03
22 14 0.19
23 31 0.42
24 20 0.27
25 7 0.09
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAT
Found at i:82120793 original size:48 final size:46
Alignment explanation
Indices: 82120734--82120855 Score: 140
Period size: 48 Copynumber: 2.6 Consensus size: 46
82120724 CATGAGAGCT
*
82120734 AGTGTAAGACATGTTTGGGACATGCATCGGC-TTCGAGA-TATTTAAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCATT-GAGACGA---AAGCC
* * * * *
82120782 AGTGTAAGACATGTCTAGGACATGTATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGACGAAAGCC
82120828 AGTGTAAGACATGTTTGGGACATGCATC
1 AGTGTAAGACATGTTTGGGACATGCATC
82120856 AGCCTCGCGA
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
46 28 0.44
48 32 0.51
49 3 0.05
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (46 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGACGAAAGCC
Found at i:82121046 original size:50 final size:50
Alignment explanation
Indices: 82120916--82121046 Score: 173
Period size: 49 Copynumber: 2.7 Consensus size: 50
82120906 CTTGTGGTGT
*
82120916 GCCAGTGTAAGACCTAT-T-TGGGACATGGCATCGACACCGATAGATGAGA
1 GCCAGTGTAAGACC-ATGTCTGGGACATGGCATCGACACCGATAGATGAAA
* *
82120965 GCCAGTGTAAGACC-TGTCTGGGACATGGCATCGGC-CTC-ATTATATGAAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACAC-CGA-TAGATGAAA
82121014 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
82121047 AGTATCTTAT
Statistics
Matches: 74, Mismatches: 3, Indels: 9
0.86 0.03 0.10
Matches are distributed among these distances:
47 1 0.01
48 3 0.04
49 52 0.70
50 18 0.24
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATAGATGAAA
Found at i:82126373 original size:108 final size:108
Alignment explanation
Indices: 82126198--82126414 Score: 434
Period size: 108 Copynumber: 2.0 Consensus size: 108
82126188 CCCTCGGGTT
82126198 TGCTTCAGCTTGTGTTTGTCCCCGAGTGGAAATGGGACCGAGTAGCCATGGATTTTGTGTCAGGG
1 TGCTTCAGCTTGTGTTTGTCCCCGAGTGGAAATGGGACCGAGTAGCCATGGATTTTGTGTCAGGG
82126263 TTGCCTTTGACACCAAGGAAAAAGGATTCAGTACGGGTCATTG
66 TTGCCTTTGACACCAAGGAAAAAGGATTCAGTACGGGTCATTG
82126306 TGCTTCAGCTTGTGTTTGTCCCCGAGTGGAAATGGGACCGAGTAGCCATGGATTTTGTGTCAGGG
1 TGCTTCAGCTTGTGTTTGTCCCCGAGTGGAAATGGGACCGAGTAGCCATGGATTTTGTGTCAGGG
82126371 TTGCCTTTGACACCAAGGAAAAAGGATTCAGTACGGGTCATTG
66 TTGCCTTTGACACCAAGGAAAAAGGATTCAGTACGGGTCATTG
82126414 T
1 T
82126415 TGATAGACTT
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 109 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.29
Consensus pattern (108 bp):
TGCTTCAGCTTGTGTTTGTCCCCGAGTGGAAATGGGACCGAGTAGCCATGGATTTTGTGTCAGGG
TTGCCTTTGACACCAAGGAAAAAGGATTCAGTACGGGTCATTG
Found at i:82130076 original size:66 final size:66
Alignment explanation
Indices: 82129970--82130101 Score: 246
Period size: 66 Copynumber: 2.0 Consensus size: 66
82129960 TGTGAGACAG
* *
82129970 CGCAGAATGACACTGTATTCCTCTGTTCTGTTTTTAGAAAATCATTATAAATTTTACAAAAATGG
1 CGCAGAATGACACTGTAATCCTCTGTTCTGTTTTTAGAAAATCATTATAAATTGTACAAAAATGG
82130035 T
66 T
82130036 CGCAGAATGACACTGTAATCCTCTGTTCTGTTTTTAGAAAATCATTATAAATTGTACAAAAATGG
1 CGCAGAATGACACTGTAATCCTCTGTTCTGTTTTTAGAAAATCATTATAAATTGTACAAAAATGG
82130101 T
66 T
82130102 TATAAGATAA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.36
Consensus pattern (66 bp):
CGCAGAATGACACTGTAATCCTCTGTTCTGTTTTTAGAAAATCATTATAAATTGTACAAAAATGG
T
Found at i:82130264 original size:55 final size:55
Alignment explanation
Indices: 82130180--82130287 Score: 198
Period size: 55 Copynumber: 2.0 Consensus size: 55
82130170 ATTTTTAATT
82130180 CTGTAAAATGAGAAATTTGATTCGTAGTGAAGAGTAGTCAGATTAGTCAAACAGG
1 CTGTAAAATGAGAAATTTGATTCGTAGTGAAGAGTAGTCAGATTAGTCAAACAGG
* *
82130235 CTGTATAATGAGAAATTTGATTCGTAGTGAAGAGTGGTCAGATTAGTCAAACA
1 CTGTAAAATGAGAAATTTGATTCGTAGTGAAGAGTAGTCAGATTAGTCAAACA
82130288 ATGAAACAGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (55 bp):
CTGTAAAATGAGAAATTTGATTCGTAGTGAAGAGTAGTCAGATTAGTCAAACAGG
Found at i:82130947 original size:47 final size:49
Alignment explanation
Indices: 82130691--82131091 Score: 645
Period size: 49 Copynumber: 8.3 Consensus size: 49
82130681 TTTAGGATTT
82130691 TAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATATATGTGA
82130740 TAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATATATGTGA
82130789 TAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATATATGTGA
82130838 TAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATATATGTGA
*
82130887 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-T-TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATATATGTGA
* *
82130934 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATATATGTGA
* *
82130981 TAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTAGCATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTA-TATATATGTGA
* * * *
82131031 TAAGGCCGAATGGCCAATGTGATGAATGTGA-ACATG-A-ATATATGTGG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGATA-GTGTATATATATGTGA
*
82131078 TAAGGCCGAATGGC
1 TAAGGCCTAATGGC
82131092 TAATGCGAAA
Statistics
Matches: 336, Mismatches: 11, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 109 0.32
48 1 0.00
49 185 0.55
50 40 0.12
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATATATGTGA
Found at i:82131159 original size:46 final size:46
Alignment explanation
Indices: 82131070--82131160 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
82131060 GAACATGAAT
* * * *
82131070 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
82131116 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
82131161 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:82131355 original size:37 final size:37
Alignment explanation
Indices: 82131305--82131412 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
82131295 GGAAATATAT
82131305 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
82131342 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
82131379 TCCAGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
82131413 TCGTCTGAGC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:82134217 original size:22 final size:22
Alignment explanation
Indices: 82134190--82134264 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
82134180 AACATGCATG
82134190 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
82134212 TGTGATGAATGTG-AGCAT-G-CATA
1 TGTGAT-AA-G-GCCGAATGGCCA-A
82134235 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
82134259 TGTGAT
1 TGTGAT
82134265 GAATATGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:82134255 original size:47 final size:47
Alignment explanation
Indices: 82134166--82134310 Score: 204
Period size: 47 Copynumber: 3.1 Consensus size: 47
82134156 TTAGGATTTT
82134166 ATGTGATGAATGTGAACATGC--ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
82134211 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * * * * *
82134258 ATGTGATGAATATGAATATGCATATATGTGGTAAAGCTGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
82134305 ATGTGA
1 ATGTGA
82134311 AATATGTATG
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 20 0.22
47 69 0.78
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:82134625 original size:37 final size:37
Alignment explanation
Indices: 82134517--82134625 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
82134507 GGAAATATAT
*
82134517 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
82134554 TCCGGGTAAGACCCGATGCCTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
82134591 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
82134626 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:82136588 original size:40 final size:40
Alignment explanation
Indices: 82136386--82136574 Score: 254
Period size: 40 Copynumber: 4.7 Consensus size: 40
82136376 TATTCGGATG
* * * *
82136386 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAATGACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * * *
82136426 A-ATTCTGAGCTAAGTCCCGAAGGCAATTGTGCGAGTTATT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
82136466 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
82136506 TTAACCAGACTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
82136546 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
82136575 AGCAAGTAGC
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 125 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:82144389 original size:80 final size:80
Alignment explanation
Indices: 82144256--82144451 Score: 281
Period size: 80 Copynumber: 2.5 Consensus size: 80
82144246 TATTCGGATG
*
82144256 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAA-TGACCAATTCTGAGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTGACCAATTCCGAGCTAAGTCCCGAAGGC
* *
82144320 AATTGTGCGAGTTACT
65 AATTGCGAGAGTTACT
* *
82144336 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-C-ATTAACCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACCAATT--CCGAGCTAAGTCCCGAAGG
*
82144399 CATTTGCGAGAGTTACT
64 CAATTGCGAGAGTTACT
*
82144416 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT
82144452 AGCTATATCC
Statistics
Matches: 106, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
78 3 0.03
79 3 0.03
80 100 0.94
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACCAATTCCGAGCTAAGTCCCGAAGGCA
ATTGCGAGAGTTACT
Found at i:82144458 original size:40 final size:40
Alignment explanation
Indices: 82144256--82144467 Score: 247
Period size: 40 Copynumber: 5.3 Consensus size: 40
82144246 TATTCGGATG
* *
82144256 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAA-TGACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACT
* * * * *
82144296 A-ATTCTGAGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
82144336 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTAC-
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
82144375 ATTAACCGGGCTAAGTCCCGAAGGCATTTGCG-AGAGTTACT
1 A-TAACCGGGCTAAGTCCCGAAGGCATTTGTGCA-AGTTACT
*
82144416 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CT
*
82144456 ATATCC-GGCTAA
1 ATAACCGGGCTAA
82144468 ATTCTGAAGG
Statistics
Matches: 149, Mismatches: 15, Indels: 17
0.82 0.08 0.09
Matches are distributed among these distances:
39 12 0.08
40 134 0.90
41 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:82150798 original size:46 final size:46
Alignment explanation
Indices: 82150663--82150874 Score: 166
Period size: 46 Copynumber: 4.6 Consensus size: 46
82150653 CGGATTGTGA
* * * * *
82150663 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCAC-ATTATGAGA
1 GCTAGTGTAAAACATGTCTGGGACATGCATTGGCCTCGA-GACGAGT
* * * *
82150709 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACGAGT
1 GCTAGTGTAA-AACATGTCTGGGACAT-GCATTGGCCTCGAGACGAGT
* *
82150757 GCTAGTGTAAAACATGGCTGGGACATGCATTGGCCTCGAGACATAAGT
1 GCTAGTGTAAAACATGTCTGGGACATGCATTGGCCTCGAGAC--GAGT
* * * *
82150805 -C-AGTGTAAGACATGTCTAGGACATGCATTGG-CTACGAGATGTGT
1 GCTAGTGTAAAACATGTCTGGGACATGCATTGGCCT-CGAGACGAGT
* *
82150849 -C-AGTGTAAGACCATGTTTGGGACATG
1 GCTAGTGTAA-AACATGTCTGGGACATG
82150875 GCATCAGCAC
Statistics
Matches: 134, Mismatches: 25, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
44 10 0.07
45 15 0.11
46 55 0.41
47 29 0.22
48 24 0.18
49 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAAACATGTCTGGGACATGCATTGGCCTCGAGACGAGT
Found at i:82153641 original size:20 final size:20
Alignment explanation
Indices: 82153604--82153640 Score: 67
Period size: 19 Copynumber: 1.9 Consensus size: 20
82153594 GACTAAACTG
82153604 AGAACTTTAGAAAATTTTGA
1 AGAACTTTAGAAAATTTTGA
82153624 AGAAC-TTAGAAAATTTT
1 AGAACTTTAGAAAATTTT
82153641 TCATCAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.46, C:0.05, G:0.14, T:0.35
Consensus pattern (20 bp):
AGAACTTTAGAAAATTTTGA
Found at i:82160077 original size:43 final size:43
Alignment explanation
Indices: 82159920--82160078 Score: 128
Period size: 43 Copynumber: 3.7 Consensus size: 43
82159910 TATGTGTTAT
** * *
82159920 CGTGTAAGACCGTGTTTGGGACGTTGGCATCGAT-TTGTGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATT-T-AATTA
* * ** * * *
82159964 CGTGTAAGACCATGTCTAGGACACTGGCATC-ATATATGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTAATTA
* *
82160006 TGTGTAAGACC-CTGTCTGGGAAAG-TGGCATCGATATTTAATTA
1 CGTGTAAGACCAC-GTCTGGG-ACGTTGGCATCGATATTTAATTA
*
82160049 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
82160079 TGTATGAGCT
Statistics
Matches: 89, Mismatches: 20, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
42 27 0.30
43 34 0.38
44 28 0.31
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTAATTA
Found at i:82162059 original size:46 final size:45
Alignment explanation
Indices: 82162001--82162216 Score: 190
Period size: 46 Copynumber: 4.6 Consensus size: 45
82161991 ATTCATGTGT
* *
82162001 GAGCTAGTGTAAGACATGTCTGCGACATGCATCGGCCACATT-ATGA-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTGA-GAC
*
82162047 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGG-CATTGAGAC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATTGAGAC
*
82162093 GAGGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-TTGAGAC
1 GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGAC
* * * * * *
82162139 GTAAGCCAGTGTAAGATATGTCTAGGACATGCATCGACTA-CGAGAT
1 G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGAC
*
82162185 GATAGTCAGTGTAAGACCATGTCTGGGACATG
1 G--AGCCAGTGTAAGA-CATGTCTGGGACATG
82162217 GCACCGACTT
Statistics
Matches: 142, Mismatches: 17, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
45 6 0.04
46 78 0.55
47 39 0.27
48 19 0.13
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATTGAGAC
Found at i:82162231 original size:47 final size:47
Alignment explanation
Indices: 82162051--82162266 Score: 160
Period size: 47 Copynumber: 4.6 Consensus size: 47
82162041 TTATGAGAGC
* * * **
82162051 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGA-GGG
1 CAGTGTAAGACCATGTCTGGGACATGGCACCGAC-TTGAGACGATAAG
* *
82162098 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAGACG-TAAG
1 C-AGTGTAAGACCATGTCTGGGACATGGCA-CCGACTTGAGACGATAAG
* * * * *
82162144 CCAGTGTAAGA-TATGTCTAGGACAT-GCATCGACTACGAGATGAT-AG
1 -CAGTGTAAGACCATGTCTGGGACATGGCACCGACT-TGAGACGATAAG
* *
82162190 TCAGTGTAAGACCATGTCTGGGACATGGCACCGACTTGAGA-TATGAG
1 -CAGTGTAAGACCATGTCTGGGACATGGCACCGACTTGAGACGATAAG
* **
82162237 CAAGTGTAAGACCGTGTCTATGACATGGCA
1 C-AGTGTAAGACCATGTCTGGGACATGGCA
82162267 TCAGCACCTT
Statistics
Matches: 137, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
45 3 0.02
46 56 0.41
47 61 0.45
48 17 0.12
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCACCGACTTGAGACGATAAG
Found at i:82162262 original size:140 final size:141
Alignment explanation
Indices: 82162006--82162268 Score: 320
Period size: 140 Copynumber: 1.9 Consensus size: 141
82161996 TGTGTGAGCT
* * *
82162006 AGTGTAAGACATGTCTGCGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCTGCGACATGCATCGACCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
* * * * *
82162071 GACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTTG
66 GACATGGCACCGACATTGAGACGAGAGCAAGTGTAAGACATGTCTAGGACATGGCATCGGCCTTG
82162135 AGACGTAAGCC
131 AGACGTAAGCC
* * * *
82162146 AGTGTAAGATATGTCTAG-GACATGCATCGACTACGA-GATGATAGTCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCT-GCGACATGCATCGACCAC-ATGATGAGAGCCAGTGTAAGACCATGTCT
* * *
82162209 GGGACATGGCACCGAC-TTGAGA-TATGAGCAAGTGTAAGACCGTGTCTATGACATGGCATC
64 GGGACATGGCACCGACATTGAGACGA-GAGCAAGTGTAAGA-CATGTCTAGGACATGGCATC
82162269 AGCACCTTAC
Statistics
Matches: 103, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
138 1 0.01
139 18 0.17
140 77 0.75
141 7 0.07
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGCGACATGCATCGACCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCACCGACATTGAGACGAGAGCAAGTGTAAGACATGTCTAGGACATGGCATCGGCCTTG
AGACGTAAGCC
Found at i:82167129 original size:24 final size:24
Alignment explanation
Indices: 82167086--82167131 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
82167076 TAAAGAAATG
*
82167086 GAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAGAGAAAAAAAATGAT
82167110 GAAAACAAAAGA-AAAAAAAATG
1 GAAAA-AAAAGAGAAAAAAAATG
82167132 TGTCCATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.07
Consensus pattern (24 bp):
GAAAAAAAAGAGAAAAAAAATGAT
Found at i:82169537 original size:27 final size:27
Alignment explanation
Indices: 82169506--82169683 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
82169496 TAAATTGTAC
82169506 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
82169533 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82169559 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
82169587 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
82169615 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
82169642 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
82169669 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82169684 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:82169620 original size:82 final size:81
Alignment explanation
Indices: 82169507--82169662 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
82169497 AAATTGTACA
* *
82169507 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
82169571 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
82169588 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
82169653 TGCGAGTTGA
65 TGCGAATTGA
82169663 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82169674 original size:82 final size:81
Alignment explanation
Indices: 82169503--82169683 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
82169493 GATTAAATTG
* *
82169503 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
82169568 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
82169584 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
82169648 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
82169666 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
82169684 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:82171629 original size:39 final size:40
Alignment explanation
Indices: 82171529--82171713 Score: 173
Period size: 40 Copynumber: 4.7 Consensus size: 40
82171519 TCAAATGATG
* * *
82171529 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
82171568 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
82171609 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
82171648 TCCGAGTTAAGTCCCAAAGGCATTTGTGTGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
82171687 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
82171714 AATGAGTAGC
Statistics
Matches: 117, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
39 33 0.28
40 74 0.63
41 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:82179472 original size:40 final size:41
Alignment explanation
Indices: 82179376--82179480 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 41
82179366 CGAATGATGT
*
82179376 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
* * * *
82179416 CCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCATAA
*
82179456 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
82179481 AACGAGTAGC
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.02
40 46 0.84
41 8 0.15
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
Found at i:82186659 original size:21 final size:21
Alignment explanation
Indices: 82186633--82186684 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
82186623 AGCGGTGGCA
*
82186633 GTGAGATTAGTTACTGTAGCG
1 GTGAGATTAGGTACTGTAGCG
*
82186654 GTGAGATTGGGTACTGTAGCG
1 GTGAGATTAGGTACTGTAGCG
82186675 GTGAGATTAG
1 GTGAGATTAG
82186685 AAACAATGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.23, C:0.08, G:0.38, T:0.31
Consensus pattern (21 bp):
GTGAGATTAGGTACTGTAGCG
Found at i:82194925 original size:9 final size:9
Alignment explanation
Indices: 82194911--82194944 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
82194901 GTTTTCGAAG
*
82194911 TCGAATAAC
1 TCGAATAAT
82194920 TCGAATAAT
1 TCGAATAAT
*
82194929 TCAAATAAT
1 TCGAATAAT
82194938 TCGAATA
1 TCGAATA
82194945 TCAAACTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.29
Consensus pattern (9 bp):
TCGAATAAT
Found at i:82195267 original size:16 final size:15
Alignment explanation
Indices: 82195248--82195300 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 15
82195238 CCTATTTACT
82195248 TTCCCTCAAACTTTTA
1 TTCCC-CAAACTTTTA
82195264 TTCCCCAAACTTTTTA
1 TTCCCCAAAC-TTTTA
82195280 TTTTCCCCCTAAACTTTTA
1 --TT-CCCC-AAACTTTTA
82195299 TT
1 TT
82195301 TCTCACCCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
15 5 0.16
16 10 0.31
17 2 0.06
18 2 0.06
19 9 0.28
20 4 0.12
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (15 bp):
TTCCCCAAACTTTTA
Found at i:82195295 original size:20 final size:18
Alignment explanation
Indices: 82195242--82195301 Score: 63
Period size: 19 Copynumber: 3.4 Consensus size: 18
82195232 ACTCCTCCTA
* *
82195242 TTTACTTTCCCTCAAACT
1 TTTATTTTCCCCCAAACT
82195260 TTTA--TT-CCCCAAACTT
1 TTTATTTTCCCCCAAAC-T
82195276 TTTATTTTCCCCCTAAACT
1 TTTATTTTCCCCC-AAACT
82195295 TTTATTT
1 TTTATTT
82195302 CTCACCCTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
15 7 0.19
16 7 0.19
18 6 0.17
19 12 0.33
20 4 0.11
ACGTcount: A:0.22, C:0.28, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTATTTTCCCCCAAACT
Found at i:82195309 original size:20 final size:20
Alignment explanation
Indices: 82195270--82195309 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
82195260 TTTATTCCCC
*
82195270 AAACTTTTTATTTTCCCCCT
1 AAACTTTTTATTTTCACCCT
82195290 AAAC-TTTTATTTCTCACCCT
1 AAACTTTTTATTT-TCACCCT
82195310 TTACTGTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (20 bp):
AAACTTTTTATTTTCACCCT
Found at i:82195813 original size:5 final size:5
Alignment explanation
Indices: 82195803--82195859 Score: 71
Period size: 5 Copynumber: 11.2 Consensus size: 5
82195793 GAACAAATAT
* *
82195803 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG AATTCC ATCTC- ATTCG ACTCG
1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG -ATTCG AT-TCG ATTCG ATTCG
82195854 ATTCG A
1 ATTCG A
82195860 GAAAACTTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
4 2 0.04
5 38 0.83
6 6 0.13
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.37
Consensus pattern (5 bp):
ATTCG
Found at i:82200364 original size:15 final size:15
Alignment explanation
Indices: 82200344--82200387 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
82200334 AAAATCGTCG
*
82200344 AATAAAATTGAAAAA
1 AATAAAATAGAAAAA
*
82200359 AATAAAA-AAATAAAA
1 AATAAAATAGA-AAAA
82200374 AATAAAATAGAAAA
1 AATAAAATAGAAAA
82200388 TCCCCCCTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 1 0.04
15 21 0.88
16 2 0.08
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.16
Consensus pattern (15 bp):
AATAAAATAGAAAAA
Found at i:82201152 original size:44 final size:44
Alignment explanation
Indices: 82201103--82201625 Score: 142
Period size: 44 Copynumber: 11.2 Consensus size: 44
82201093 TAACTTCAAA
*
82201103 GAGATAAGATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
1 GAGATAAGATACTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
* * * * * **
82201147 GAGATAGGATTAC-TAGCTTCAATCTGCTCCGTTGTAATCTCAGG
1 GAGATAAGA-TACTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
* * * * *
82201191 GAGATAAGAT--TTCTGGCTTCAATATGATGCGATTTACTCTACTGTAA-CTTTAGA
1 GAGATAAGATACTT-T-G-TT---T-TAATCCG-----CTCCACTGTAATC-TCAGG
* *
82201245 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGG
1 GAGATAAGATACTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
* * * * * *
82201289 GAGATAGGATTAC-TAGCTTCAATCTGCT-TAGCTGTAATCTCAGG
1 GAGATAAGA-TACTTTGTTTTAATCCGCTCCA-CTGTAATCTCAGG
* * *
82201333 GAGATAAGAT--TTCTAGCTTCAATCTGGTGCGATCTACTCTACTGTAA-CTTCAGA
1 GAGATAAGATACTT-T-GTTTTAATC-----CG--CT-C-C-ACTGTAATC-TCAGG
*
82201387 GAGATAAGAT-CATTTATTTTAATCCGCTCCACTGTAATCTCAGG
1 GAGATAAGATAC-TTTGTTTTAATCCGCTCCACTGTAATCTCAGG
* * * * * *
82201431 GAGATAGGATTAC-TAGCTTCAATCTGCTCCGCTGTAATCTCAGG
1 GAGATAAGA-TACTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
* * *
82201475 GAGATAAGAT--TTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAA-CTTCAGA
1 GAGATAAGATACTT-T-G-TT---T-TAATCCG--CT-C-C-ACTGTAATC-TCAGG
* *
82201529 GAGATAAGATCCTTTATTTTAAT-CGCTCCACTGTAATCTCAGG
1 GAGATAAGATACTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
* * * * * * *
82201572 GAGATAGGATTAC-TAGCTTCAATCTGCTCCGCTGTAATCTTAGG
1 GAGATAAGA-TACTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
82201616 GAGATAAGAT
1 GAGATAAGAT
82201626 TTCTGGCGTC
Statistics
Matches: 348, Mismatches: 72, Indels: 119
0.65 0.13 0.22
Matches are distributed among these distances:
42 3 0.01
43 30 0.09
44 185 0.53
45 11 0.03
46 4 0.01
47 2 0.01
48 4 0.01
49 17 0.05
50 2 0.01
51 4 0.01
52 1 0.00
53 8 0.02
54 67 0.19
55 4 0.01
56 6 0.02
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (44 bp):
GAGATAAGATACTTTGTTTTAATCCGCTCCACTGTAATCTCAGG
Found at i:82201229 original size:142 final size:142
Alignment explanation
Indices: 82201064--82201724 Score: 1162
Period size: 142 Copynumber: 4.7 Consensus size: 142
82201054 TGCTGTTGTA
* *
82201064 GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTTTGTTTTAATCCG
1 GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
*
82201129 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGTTGTAATCTCAGGGAG
66 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
82201194 ATAAGATTTCTG
131 ATAAGATTTCTG
* * *
82201206 GCTTCAATATGATGCGATTTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCG
1 GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
**
82201271 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTTAGCTGTAATCTCAGGGAG
66 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
*
82201336 ATAAGATTTCTA
131 ATAAGATTTCTG
* *
82201348 GCTTCAATCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCG
1 GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
82201413 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
66 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
82201478 ATAAGATTTCTG
131 ATAAGATTTCTG
82201490 GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAAT-CG
1 GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
*
82201554 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTTAGGGAG
66 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
82201619 ATAAGATTTCTG
131 ATAAGATTTCTG
* * *
82201631 GCGTCAATCTGATGCGATCTACTGTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCG
1 GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
* *
82201696 CTCTACTGTAATCTCAAGGAGATAGGATT
66 CTCCACTGTAATCTCAGGGAGATAGGATT
82201725 TCTTCTATCT
Statistics
Matches: 493, Mismatches: 25, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
141 137 0.28
142 356 0.72
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (142 bp):
GCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
ATAAGATTTCTG
Found at i:82201391 original size:98 final size:98
Alignment explanation
Indices: 82201275--82201456 Score: 226
Period size: 98 Copynumber: 1.9 Consensus size: 98
82201265 AATCCGCTCC
* * * * *
82201275 ACTGTAATCTCAGGGAGATAGGATTA-CTAGCTTCAATCTGCT-TAGCTGTAATCTCAGGGAGAT
1 ACTGTAATCTCAGAGAGATAAGATCATCTA-CTTCAATCCGCTCCA-CTGTAATCTCAGGGAGAT
*
82201338 AAGATTTCTAGCTTCAATCTGGTGCGATCTACTCT
64 AAGATTACTAGCTTCAATCTGGTGCGATCTACTCT
* * *
82201373 ACTGTAA-CTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATA
1 ACTGTAATC-TCAGAGAGATAAGATCATCTACTTCAATCCGCTCCACTGTAATCTCAGGGAGATA
*
82201437 GGATTACTAGCTTCAATCTG
65 AGATTACTAGCTTCAATCTG
82201457 CTCCGCTGTA
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
97 1 0.01
98 67 0.94
99 3 0.04
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (98 bp):
ACTGTAATCTCAGAGAGATAAGATCATCTACTTCAATCCGCTCCACTGTAATCTCAGGGAGATAA
GATTACTAGCTTCAATCTGGTGCGATCTACTCT
Found at i:82201638 original size:44 final size:44
Alignment explanation
Indices: 82201549--82201641 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
82201539 CCTTTATTTT
* *
82201549 AATC-GCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCGTC
* * * *
82201592 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTTCTGGCGTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCGTC
82201636 AATCTG
1 AATCTG
82201642 ATGCGATCTA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 4 0.09
44 39 0.91
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCGTC
Found at i:82211774 original size:30 final size:30
Alignment explanation
Indices: 82211738--82211798 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
82211728 TGGTTTTTGG
* * *
82211738 GTTTAGGCTAGTTGGGTTTGGGTTAAAGCT
1 GTTTAGGCTAATCGGGTTTAGGTTAAAGCT
82211768 GTTTAGGCTAATCGGGTTTAGGTTAAAGCT
1 GTTTAGGCTAATCGGGTTTAGGTTAAAGCT
82211798 G
1 G
82211799 GTTTTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.20, C:0.08, G:0.34, T:0.38
Consensus pattern (30 bp):
GTTTAGGCTAATCGGGTTTAGGTTAAAGCT
Found at i:82214378 original size:18 final size:18
Alignment explanation
Indices: 82214357--82214393 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
82214347 TGATTTTTCG
*
82214357 AATTCAAATAACTCGAAT
1 AATTCAAATAAATCGAAT
*
82214375 AATTCGAATAAATCGAAT
1 AATTCAAATAAATCGAAT
82214393 A
1 A
82214394 TCAACTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.08, T:0.27
Consensus pattern (18 bp):
AATTCAAATAAATCGAAT
Found at i:82215272 original size:71 final size:71
Alignment explanation
Indices: 82215156--82215298 Score: 268
Period size: 71 Copynumber: 2.0 Consensus size: 71
82215146 CCCTACTAGC
82215156 AGCAAGTAGCGCCGCAAGCCCCCGCCTTCAGCGCCTCCAGCAGCATCCGGACGCCGCAAGTTTCG
1 AGCAAGTAGCGCCGCAAGCCCCCGCCTTCAGCGCCTCCAGCAGCATCCGGACGCCGCAAGTTTCG
82215221 GCCTCT
66 GCCTCT
* *
82215227 AGCAAGTAGCGCCGCAAGCCCCCGCCTTCAGCGCCTCTAGCAGCATCCGGACGCGGCAAGTTTCG
1 AGCAAGTAGCGCCGCAAGCCCCCGCCTTCAGCGCCTCCAGCAGCATCCGGACGCCGCAAGTTTCG
82215292 GCCTCT
66 GCCTCT
82215298 A
1 A
82215299 CGCATGCCAA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.19, C:0.41, G:0.26, T:0.15
Consensus pattern (71 bp):
AGCAAGTAGCGCCGCAAGCCCCCGCCTTCAGCGCCTCCAGCAGCATCCGGACGCCGCAAGTTTCG
GCCTCT
Found at i:82229132 original size:78 final size:81
Alignment explanation
Indices: 82228997--82229180 Score: 243
Period size: 78 Copynumber: 2.3 Consensus size: 81
82228987 TCGAATGATG
*
82228997 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
82229061 TGTGCGAGATACTAT-
66 TGTGCGAGATACTATA
* * * **
82229076 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
82229138 TTGTGCGAGTTACTATA
65 TTGTGCGAGATACTATA
* *
82229155 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82229181 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
77 1 0.01
78 50 0.54
79 27 0.29
80 14 0.15
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:82229142 original size:40 final size:40
Alignment explanation
Indices: 82228997--82229180 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
82228987 TCGAATGATG
* * * *
82228997 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
82229037 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
82229076 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82229115 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
82229156 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82229181 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 23 0.18
39 21 0.17
40 71 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:82229199 original size:80 final size:77
Alignment explanation
Indices: 82229050--82229213 Score: 213
Period size: 78 Copynumber: 2.1 Consensus size: 77
82229040 GGACTAAGAT
* **
82229050 CCGAAGGCATTTGTGCGAGATACTATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAGATACTATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
*
82229115 TCCGGGTTAAGTC
66 TCC-GGTTAAATC
* *
82229128 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCATTTGTGCGAGATACTAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CT
* *
82229192 ATATCCGGTTAAATT
63 AAATCCGGTTAAATC
82229207 CCGAAGG
1 CCGAAGG
82229214 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
78 25 0.33
79 25 0.33
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATACTATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGTTAAATC
Found at i:82230844 original size:100 final size:100
Alignment explanation
Indices: 82230714--82231906 Score: 1926
Period size: 100 Copynumber: 11.9 Consensus size: 100
82230704 GGTTGAAAAG
* ** *
82230714 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGCGGAATAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
* * *
82230779 TACGACAGCGGATCTGGTTTCCCTGATATTGCAAT
66 TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
* * * * *
82230814 TAAAAAGATTAAAGCCACAACGGCAGATCTTACTTCCTTAGCAGTGCAG-CGAAATAGATTGAAG
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAG-AACAGATTGAAG
* * *
82230878 CTACGACAGCGGATCTGGTTTCCCTGATATTGCAAT
65 CTACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
* * * * *
82230914 TAAAAAGATTAAAGCCACAACGGCAGATCTTACTTCCTTAGCAGTGCAG-CGAAATAGATTGAAG
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAG-AACAGATTGAAG
* * *
82230978 CTACGACAGCGGATCTGGTTTCCCTGATATTGCAAT
65 CTACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
* * * * *
82231014 TAAAAAGATTAAAGCCACAACGGCAGATCTTACTTCCTTAGCAGTGCAG-CGAAATAGATTGAAG
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAG-AACAGATTGAAG
* * *
82231078 CTACGACAGCGGATCTGGTTTCCCTGATATTGCAAT
65 CTACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
* * * * *
82231114 TAAAAAGATTAAAGCCACAACGGCAGATCTTACTTCCTTAGCAGTGCAG-CGAAATAGATTGAAG
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAG-AACAGATTGAAG
* * *
82231178 CTACGACAGCGGATCTGGTTTCCCTGATATTGCAAT
65 CTACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
82231214 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
82231279 TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
66 TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
82231314 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
82231379 TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
66 TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
82231414 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
82231479 TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
66 TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
82231514 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
82231579 TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
66 TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
82231614 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
82231679 TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
66 TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
82231714 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
82231779 TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
66 TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
* *
82231814 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
** *
82231879 TACGACGGTGGATCTGGTTTCCCGGATA
66 TACGACGGCAGATCTGGTTTCCCTGATA
82231907 CTGTTTTCAG
Statistics
Matches: 1075, Mismatches: 16, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
99 1 0.00
100 1073 1.00
101 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (100 bp):
TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGC
TACGACGGCAGATCTGGTTTCCCTGATATAGCAAT
Found at i:82232126 original size:100 final size:100
Alignment explanation
Indices: 82231953--82232133 Score: 292
Period size: 100 Copynumber: 1.8 Consensus size: 100
82231943 TGAGGTATGT
* *
82231953 ATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGCTACGACG
1 ATTGAAGCCACAACGGCAGATCTTACTTCCTGAGCAGTGAAGTAGAACAGATTGAAGCTACGACG
82232018 GCAGATCTGGTTTCCCTGATATAGCAATTAAAAAG
66 GCAGATCTGGTTTCCCTGATATAGCAATTAAAAAG
* ** *
82232053 ATTGAAGCCACAACGGCAGATCTTACTTGCCTGA-CGGTGCGGTAGAATAGATTGAAGCTACGAC
1 ATTGAAGCCACAACGGCAGATCTTACTT-CCTGAGCAGTGAAGTAGAACAGATTGAAGCTACGAC
82232117 GGCAGATCTGGTTTCCC
65 GGCAGATCTGGTTTCCC
82232134 CGACATTGCA
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
100 70 0.95
101 4 0.05
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.24
Consensus pattern (100 bp):
ATTGAAGCCACAACGGCAGATCTTACTTCCTGAGCAGTGAAGTAGAACAGATTGAAGCTACGACG
GCAGATCTGGTTTCCCTGATATAGCAATTAAAAAG
Found at i:82232149 original size:100 final size:100
Alignment explanation
Indices: 82231953--82232158 Score: 290
Period size: 100 Copynumber: 2.1 Consensus size: 100
82231943 TGAGGTATGT
* *
82231953 ATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGAAGTAGAACAGATTGAAGCTACGACG
1 ATTGAAGCCACAACGGCAGATCTTACTTCCTGAGCAGTGAAGTAGAACAGATTGAAGCTACGACG
* *
82232018 GCAGATCTGGTTTCCCTGATATAGCAATTAAA-AA
66 GCAGATCTGGTTTCCCCGACATAGCAATTAAACAA
* ** *
82232052 GATTGAAGCCACAACGGCAGATCTTACTTGCCTGA-CGGTGCGGTAGAATAGATTGAAGCTACGA
1 -ATTGAAGCCACAACGGCAGATCTTACTT-CCTGAGCAGTGAAGTAGAACAGATTGAAGCTACGA
* *
82232116 CGGCAGATCTGGTTTCCCCGACATTGCAGTTAAACAA
64 CGGCAGATCTGGTTTCCCCGACATAGCAATTAAACAA
82232153 ATTGAA
1 ATTGAA
82232159 AATTTCAGAT
Statistics
Matches: 94, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
100 88 0.94
101 6 0.06
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.24
Consensus pattern (100 bp):
ATTGAAGCCACAACGGCAGATCTTACTTCCTGAGCAGTGAAGTAGAACAGATTGAAGCTACGACG
GCAGATCTGGTTTCCCCGACATAGCAATTAAACAA
Found at i:82232157 original size:50 final size:50
Alignment explanation
Indices: 82231998--82232158 Score: 146
Period size: 50 Copynumber: 3.2 Consensus size: 50
82231988 AGTGAAGTAG
* * * *
82231998 AACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGATATAGCAATTA
1 AACAAATTGAAGCTACGACGGCAGATCTGGTTTCCCTGACATTGCAGTTA
* * *** * ** *
82232048 AA-AAGATTGAAGCCACAACGGCAGATCTTACTTGCCTGACGGTGC-GGTA
1 AACAA-ATTGAAGCTACGACGGCAGATCTGGTTTCCCTGACATTGCAGTTA
* * *
82232097 GAATAGATTGAAGCTACGACGGCAGATCTGGTTTCCCCGACATTGCAGTTA
1 -AACAAATTGAAGCTACGACGGCAGATCTGGTTTCCCTGACATTGCAGTTA
82232148 AACAAATTGAA
1 AACAAATTGAA
82232159 AATTTCAGAT
Statistics
Matches: 81, Mismatches: 26, Indels: 8
0.70 0.23 0.07
Matches are distributed among these distances:
49 3 0.04
50 74 0.91
51 4 0.05
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (50 bp):
AACAAATTGAAGCTACGACGGCAGATCTGGTTTCCCTGACATTGCAGTTA
Found at i:82232347 original size:44 final size:45
Alignment explanation
Indices: 82232284--82232381 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 45
82232274 CAGTGGAATC
** *
82232284 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCACATACTGGTCGTGAAGTA
* * * *
82232328 GATCGAAGAAAGTATATCTTGTCTTCCCATACTGGTGGTGAAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCACATACTGGTCGTGAAGTA
82232373 GATCGAAGA
1 GATCGAAGA
82232382 TATAAGTCTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 29 0.63
45 17 0.37
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.29
Consensus pattern (45 bp):
GATCGAAGAAAGCAGATCTTGTCTTCACATACTGGTCGTGAAGTA
Found at i:82246486 original size:84 final size:85
Alignment explanation
Indices: 82246345--82246513 Score: 286
Period size: 84 Copynumber: 2.0 Consensus size: 85
82246335 TCACTTTTGG
* *
82246345 GACTAAATTAGAAATTTTGAATAGTACAATGATTAAATTGTAAAATTCCCATTTTTATCGAGAAA
1 GACTAAATTAGAAAATTTAAATAGTACAATGATTAAATTGTAAAATTCCCATTTTTATCGAGAAA
*
82246410 AGAGCCAAAG-GAGATTTTA
66 AGAGCAAAAGTGAGATTTTA
*
82246429 GACTAAATTAGAAAATTTAAATAGTACAATGATTAAATTGTAAAATTCCCATTTTTATCTAGAAA
1 GACTAAATTAGAAAATTTAAATAGTACAATGATTAAATTGTAAAATTCCCATTTTTATCGAGAAA
*
82246494 ATAGCAAAAGTGAGATTTTA
66 AGAGCAAAAGTGAGATTTTA
82246514 ATTACTCATA
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
84 70 0.89
85 9 0.11
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.33
Consensus pattern (85 bp):
GACTAAATTAGAAAATTTAAATAGTACAATGATTAAATTGTAAAATTCCCATTTTTATCGAGAAA
AGAGCAAAAGTGAGATTTTA
Found at i:82252122 original size:16 final size:16
Alignment explanation
Indices: 82252083--82252122 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
82252073 TCTTCAACTG
*
82252083 AAGAAAGAATATGCCT
1 AAGAAAGAATACGCCT
*
82252099 AATAAAGAATACGCCT
1 AAGAAAGAATACGCCT
*
82252115 AAGGAAGA
1 AAGAAAGA
82252123 GTATGCCCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.53, C:0.12, G:0.20, T:0.15
Consensus pattern (16 bp):
AAGAAAGAATACGCCT
Found at i:82253498 original size:25 final size:25
Alignment explanation
Indices: 82253455--82253508 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
82253445 TTGTAGCGAG
* **
82253455 TTATTTGTAAGGCTTTTATGAAAAA
1 TTATTTGTAAAGCCCTTATGAAAAA
**
82253480 TTATTTGTAAAGCCCTTATGGCAAA
1 TTATTTGTAAAGCCCTTATGAAAAA
82253505 TTAT
1 TTAT
82253509 CTAAAAGGCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (25 bp):
TTATTTGTAAAGCCCTTATGAAAAA
Found at i:82256884 original size:23 final size:22
Alignment explanation
Indices: 82256841--82256884 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
82256831 TTCTAAGTTG
82256841 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
82256864 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
82256885 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:82256993 original size:45 final size:45
Alignment explanation
Indices: 82256929--82257017 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
82256919 AACAGATACT
* *
82256929 CAGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CAGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
82256974 CAGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 CAGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
82257018 TCGGTTCACT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.25
Consensus pattern (45 bp):
CAGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:82257090 original size:51 final size:51
Alignment explanation
Indices: 82257028--82257164 Score: 168
Period size: 51 Copynumber: 2.7 Consensus size: 51
82257018 TCGGTTCACT
* * *
82257028 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCAATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATAACCATCCAATACACA
* * * ** *
82257079 TAGTAGTCTGCACATAGTACTACACACGTGATCGA-AACTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATAACCATCCAATACACA
*
82257130 TAGTAGCCTGCAGATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
82257165 CACTTTCAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
50 2 0.03
51 68 0.94
52 2 0.03
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATAACCATCCAATACACA
Found at i:82260697 original size:39 final size:39
Alignment explanation
Indices: 82260643--82260723 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
82260633 GAAAATAAGA
82260643 CGAATAACACGAGTAAGATTTTATAAAGCTTAGTAAGTT
1 CGAATAACACGAGTAAGATTTTATAAAGCTTAGTAAGTT
* *
82260682 CGAATAACACGAGTAAGCTTTTATAAATCTTAGTAAGTT
1 CGAATAACACGAGTAAGATTTTATAAAGCTTAGTAAGTT
82260721 CGA
1 CGA
82260724 TGATTAAAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (39 bp):
CGAATAACACGAGTAAGATTTTATAAAGCTTAGTAAGTT
Found at i:82262975 original size:41 final size:41
Alignment explanation
Indices: 82262821--82262968 Score: 226
Period size: 41 Copynumber: 3.6 Consensus size: 41
82262811 TAAGGCCCAA
* * *
82262821 ACTGATTCTGTGATGGGCTATGGCCCTACTGCATATTTGAA
1 ACTGATACTGTGATGGGCTAAGGCCCTACTGCATATTTGAT
* *
82262862 ATTGATTCTGTGATGGGCTAAGGCCCTACTGCATATTTGAT
1 ACTGATACTGTGATGGGCTAAGGCCCTACTGCATATTTGAT
*
82262903 ACTGATACTGTGATGGGCTACGGCCCTACTGCATATTTGAT
1 ACTGATACTGTGATGGGCTAAGGCCCTACTGCATATTTGAT
*
82262944 ACTG-TACTGAGATGGGCTAAGGCCC
1 ACTGATACTGTGATGGGCTAAGGCCC
82262969 AAACTGCTAC
Statistics
Matches: 99, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 19 0.19
41 80 0.81
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (41 bp):
ACTGATACTGTGATGGGCTAAGGCCCTACTGCATATTTGAT
Found at i:82262975 original size:82 final size:80
Alignment explanation
Indices: 82262821--82262987 Score: 228
Period size: 82 Copynumber: 2.1 Consensus size: 80
82262811 TAAGGCCCAA
* * * * *
82262821 ACTGATTCTGTGATGGGCTATGGCCCTACTGCATATTTGAAATTGATTCTGTGATGGGCTAAGGC
1 ACTGATACTGTGATGGGCTACGGCCCTACTGCATATTTGAAACTGATACTGAGATGGGCTAAGGC
* *
82262886 CCTACTGCATATTTGAT
66 CCAACTGC-TA-CTGAT
*
82262903 ACTGATACTGTGATGGGCTACGGCCCTACTGCATATTTGATACTG-TACTGAGATGGGCTAAGGC
1 ACTGATACTGTGATGGGCTACGGCCCTACTGCATATTTGAAACTGATACTGAGATGGGCTAAGGC
82262967 CCAAACTGCTACTGAT
66 CC-AACTGCTACTGAT
82262983 ACTGA
1 ACTGA
82262988 AATAGGGCTT
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 9 0.12
81 21 0.28
82 46 0.61
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (80 bp):
ACTGATACTGTGATGGGCTACGGCCCTACTGCATATTTGAAACTGATACTGAGATGGGCTAAGGC
CCAACTGCTACTGAT
Found at i:82268093 original size:22 final size:22
Alignment explanation
Indices: 82268049--82268093 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
82268039 TTAAGTGACT
* *
82268049 AAAATTGGTTTTTGGATGGTCG
1 AAAATAGGTTTTTGGATGCTCG
82268071 AAAATAGG-TTTTGGAGTGCTCG
1 AAAATAGGTTTTTGGA-TGCTCG
82268093 A
1 A
82268094 GGATCTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.27, C:0.07, G:0.31, T:0.36
Consensus pattern (22 bp):
AAAATAGGTTTTTGGATGCTCG
Found at i:82269376 original size:40 final size:41
Alignment explanation
Indices: 82269284--82269471 Score: 236
Period size: 41 Copynumber: 4.6 Consensus size: 41
82269274 TAAGGCCCAA
* * *
82269284 ACTGATTCTGTGATGGGCTAAGGCCCTACTGCATATTTGAA
1 ACTGATACTGTGATGGGCTAAGGCCCTACTACATATTTGAT
* **
82269325 ACTGATCCTGTGATGGGCTAAGGCCCTA-TGGATATTTGAT
1 ACTGATACTGTGATGGGCTAAGGCCCTACTACATATTTGAT
* * *
82269365 ACTGATACTGTGATAGGTTAAGGCCCTACTACAGATTTGAT
1 ACTGATACTGTGATGGGCTAAGGCCCTACTACATATTTGAT
* * *
82269406 ACTGATGCTATGATGGGCTAAGACCCTACTACATATTTGAT
1 ACTGATACTGTGATGGGCTAAGGCCCTACTACATATTTGAT
* *
82269447 ACT-ATACTGAGATGGGCAAAGGCCC
1 ACTGATACTGTGATGGGCTAAGGCCC
82269472 AAATTGTTAC
Statistics
Matches: 126, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
40 52 0.41
41 74 0.59
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (41 bp):
ACTGATACTGTGATGGGCTAAGGCCCTACTACATATTTGAT
Found at i:82269420 original size:81 final size:82
Alignment explanation
Indices: 82269284--82269471 Score: 236
Period size: 81 Copynumber: 2.3 Consensus size: 82
82269274 TAAGGCCCAA
* * * * * *
82269284 ACTGATTCTGTGATGGGCTAAGGCCCTACTGCATATTTGAAACTGATCCTGTGATGGGCTAAGGC
1 ACTGATACTGTGATAGGCTAAGGCCCTACTACAGATTTGAAACTGATCCTATGATGGGCTAAGAC
**
82269349 CCTA-TGGATATTTGAT
66 CCTACTACATATTTGAT
* * *
82269365 ACTGATACTGTGATAGGTTAAGGCCCTACTACAGATTTGATACTGATGCTATGATGGGCTAAGAC
1 ACTGATACTGTGATAGGCTAAGGCCCTACTACAGATTTGAAACTGATCCTATGATGGGCTAAGAC
82269430 CCTACTACATATTTGAT
66 CCTACTACATATTTGAT
* * *
82269447 ACT-ATACTGAGATGGGCAAAGGCCC
1 ACTGATACTGTGATAGGCTAAGGCCC
82269472 AAATTGTTAC
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 78 0.86
82 13 0.14
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (82 bp):
ACTGATACTGTGATAGGCTAAGGCCCTACTACAGATTTGAAACTGATCCTATGATGGGCTAAGAC
CCTACTACATATTTGAT
Found at i:82275850 original size:23 final size:22
Alignment explanation
Indices: 82275824--82275869 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
82275814 GAAATTAATT
82275824 TGAATTG-TGAACATGAGAAATGA
1 TGAATTGATGAA-ATG-GAAATGA
82275847 TGAATTGAATGAAATGGAAATGA
1 TGAATTG-ATGAAATGGAAATGA
82275870 ATCATTGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 14 0.67
24 3 0.14
25 4 0.19
ACGTcount: A:0.46, C:0.02, G:0.26, T:0.26
Consensus pattern (22 bp):
TGAATTGATGAAATGGAAATGA
Done.