Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 239 of 290
Found at i:82586703 original size:20 final size:20
Alignment explanation
Indices: 82586638--82586704 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
82586628 TTATGAATAC
*
82586638 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAG
*
82586658 ATCATGTGCATACCATACATG
1 ATCATGTGCATATCATACA-G
*
82586679 -TCATGTGCATATTATACAG
1 ATCATGTGCATATCATACAG
*
82586698 ACCATGT
1 ATCATGT
82586705 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 1 0.03
20 39 0.98
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAG
Found at i:82590116 original size:21 final size:20
Alignment explanation
Indices: 82590077--82590116 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
82590067 GGCGCTTCTG
*
82590077 TCAAAACCTTCTTCAACTTC
1 TCAAAACCTTCTGCAACTTC
*
82590097 TCAAAAGCCTTCTGCTACTT
1 TCAAAA-CCTTCTGCAACTT
82590117 ATTTTTCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.28, C:0.33, G:0.05, T:0.35
Consensus pattern (20 bp):
TCAAAACCTTCTGCAACTTC
Found at i:82594246 original size:84 final size:83
Alignment explanation
Indices: 82594147--82594313 Score: 298
Period size: 84 Copynumber: 2.0 Consensus size: 83
82594137 GTGGGGAATA
82594147 ACTCAACCCACCCAACCATAACTCTCCACTGGCAGCATAGCTGCTTTATCATATAACTGGAGGCC
1 ACTCAACCCACCCAACCATAACTCTCCACTGGCAGCATAGCTGCTTTATCATATAACTGGAGGCC
82594212 TAGCCTCTTTTAATAACT
66 TAGCCTCTTTTAATAACT
* * *
82594230 NACTCAACCCATCCAACCATAACTCTCCACTGGCAGCATAGTTGCTTTGTCATATAACTGGAGGC
1 -ACTCAACCCACCCAACCATAACTCTCCACTGGCAGCATAGCTGCTTTATCATATAACTGGAGGC
82594295 CTAGCCTCTTTTAATAACT
65 CTAGCCTCTTTTAATAACT
82594314 GGGGCACAAG
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (83 bp):
ACTCAACCCACCCAACCATAACTCTCCACTGGCAGCATAGCTGCTTTATCATATAACTGGAGGCC
TAGCCTCTTTTAATAACT
Found at i:82594335 original size:24 final size:24
Alignment explanation
Indices: 82594283--82594429 Score: 206
Period size: 24 Copynumber: 6.0 Consensus size: 24
82594273 GCTTTGTCAT
* *
82594283 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
82594308 ATAACTGGGGCACAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
82594332 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
82594356 ATAACTGAGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
82594380 ATAACTGGGGCATAAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTG
82594406 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
82594430 CACTTTCTCC
Statistics
Matches: 111, Mismatches: 8, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
24 76 0.68
25 12 0.11
26 23 0.21
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:82594503 original size:20 final size:20
Alignment explanation
Indices: 82594478--82594544 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
82594468 TTATGAATAC
82594478 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
82594498 ATCATGTGCATAACATACAT
1 ATCATGTGCATATCATACAT
*
82594518 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
82594538 ACCATGT
1 ATCATGT
82594545 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:82598240 original size:42 final size:42
Alignment explanation
Indices: 82598137--82598249 Score: 129
Period size: 43 Copynumber: 2.7 Consensus size: 42
82598127 GAATTAAGCA
* *
82598137 ATCCGAGCTCGTTGAGTGGTCCAAGTTCGTGATATGTATGAG
1 ATCCGAGCTCGTTGAGTGGTCCAAGTTCGTGAGATATATGAG
* * * * *
82598179 ATTCCGAACTTGTTGAGTGGTCTAAGTTTGTGAGATATGTG-G
1 A-TCCGAGCTCGTTGAGTGGTCCAAGTTCGTGAGATATATGAG
*
82598221 CATCCGAGCTCGTTGAGTGGTCCGAGTTC
1 -ATCCGAGCTCGTTGAGTGGTCCAAGTTC
82598250 ATTATGGATA
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
42 24 0.42
43 33 0.58
ACGTcount: A:0.19, C:0.17, G:0.31, T:0.33
Consensus pattern (42 bp):
ATCCGAGCTCGTTGAGTGGTCCAAGTTCGTGAGATATATGAG
Found at i:82605294 original size:12 final size:12
Alignment explanation
Indices: 82605277--82605301 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82605267 TTATTATGTA
82605277 AGTATTGTTATT
1 AGTATTGTTATT
82605289 AGTATTGTTATT
1 AGTATTGTTATT
82605301 A
1 A
82605302 TTAAGTTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (12 bp):
AGTATTGTTATT
Found at i:82605441 original size:44 final size:44
Alignment explanation
Indices: 82605376--82605459 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
82605366 TTGATATCCC
* * *
82605376 AAAGTCCATGGTTGTACCATGGGAATTAAGGAAGAATTGACGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
* *
82605420 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGA
82605460 TGGTTAAGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 31 0.91
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.25
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
Found at i:82605531 original size:45 final size:45
Alignment explanation
Indices: 82605465--82605881 Score: 271
Period size: 47 Copynumber: 9.0 Consensus size: 45
82605455 ATTGATGGTT
* *
82605465 AAGGATACCTTGTAAGACCATGTCAAGACATGGCATTGGTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGAC
* * * * * *
82605510 AAGGATCCCGTGTAAGTCCATGTCAAGACATGGCATCGGCATTGATC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTA-AGA-C
** ** *
82605557 AAGGACT-CCATGTAAGACCACATCAAGATGTGGCATTGGCACTAAGAT
1 AAGGA-TACCATGTAAGACCATGTCAAGACATGGCATTGG---TAAGAC
* * *** *
82605605 AAGGATACCATGCAAGGCCATGTTTGGAACATGGCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAGAC
* * * *
82605652 GAGGATATCATGTAAGACCATGTCAAGACATGGCACTGGTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGAC
* * * * *
82605697 AAGGATCCCGTGTAAGACCATGTCAAGACATGGCATCGGCAATGATT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAA-GA-C
** ** * *
82605744 AAGGACT-CCATGTAAGACCACATCAAGATGTGGCATTAGCACTAAGAG
1 AAGGA-TACCATGTAAGACCATGTCAAGACATGGCATT-G--GTAAGAC
* * *** * *
82605792 AAGGATACCATGTAAAACCACGTTTGGAACATAGCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAGAC
* * * *
82605839 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
82605882 TTCTATAAGG
Statistics
Matches: 280, Mismatches: 74, Indels: 36
0.72 0.19 0.09
Matches are distributed among these distances:
45 85 0.30
46 16 0.06
47 113 0.40
48 41 0.15
49 16 0.06
50 9 0.03
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (45 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGAC
Found at i:82605668 original size:95 final size:95
Alignment explanation
Indices: 82605565--82605858 Score: 312
Period size: 95 Copynumber: 3.1 Consensus size: 95
82605555 TCAAGGACTC
* * *
82605565 CATGTAAGACCACATCAAGATGTGGCATTGGCACTAAGATAAGGATACCATGCAAGGCCATGTTT
1 CATGTAAGACCACATCAAGATGTGGCATTGGCACTAAGACAAGGATACCATGTAAGACCATGTTT
*
82605630 GGAACATGGCATTTGGTAAGATGAGGATAT
66 GGAACATGGCATTTGGTAAGATAAGGATAT
** ** * * * * **
82605660 CATGTAAGACCATGTCAAGACATGGCACTGG---TAAGGCAAGGATCCCGTGTAAGACCATGTCA
1 CATGTAAGACCACATCAAGATGTGGCATTGGCACTAAGACAAGGATACCATGTAAGACCATGTTT
* * * *
82605722 AG-ACATGGCA-TCGGCAATGATTAAGGACT-C
66 GGAACATGGCATTTGGTAA-GA-TAAGGA-TAT
* * * *
82605752 CATGTAAGACCACATCAAGATGTGGCATTAGCACTAAGAGAAGGATACCATGTAAAACCACGTTT
1 CATGTAAGACCACATCAAGATGTGGCATTGGCACTAAGACAAGGATACCATGTAAGACCATGTTT
*
82605817 GGAACATAGCATTTGGTAAGATAAGGATAT
66 GGAACATGGCATTTGGTAAGATAAGGATAT
82605847 CATGTAAGACCA
1 CATGTAAGACCA
82605859 TGCCAAGGCA
Statistics
Matches: 153, Mismatches: 37, Indels: 18
0.74 0.18 0.09
Matches are distributed among these distances:
90 5 0.03
91 10 0.07
92 54 0.35
93 1 0.01
94 1 0.01
95 68 0.44
96 9 0.06
97 5 0.03
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (95 bp):
CATGTAAGACCACATCAAGATGTGGCATTGGCACTAAGACAAGGATACCATGTAAGACCATGTTT
GGAACATGGCATTTGGTAAGATAAGGATAT
Found at i:82605770 original size:92 final size:92
Alignment explanation
Indices: 82605475--82605780 Score: 312
Period size: 92 Copynumber: 3.3 Consensus size: 92
82605465 AAGGATACCT
** *
82605475 TGTAAGACCATGTCAAGACATGGCATTGGTAAGGCAAGGATCCCGTGTAAGTCCATGTCAAGACA
1 TGTAAGACCACATCAAGACATGGCATTGGTAAGGCAAGGATCCCGTGTAAGACCATGTCAAGACA
* *
82605540 TGGCATCGGCATTGATCAAGGACTCCA
66 TGGCATCGGCAATGATTAAGGACTCCA
** ** * * * * ***
82605567 TGTAAGACCACATCAAGATGTGGCATTGGCACTAAGATAAGGATACCATGCAAGGCCATGTTTGG
1 TGTAAGACCACATCAAGACATGGCATTGG---TAAGGCAAGGATCCCGTGTAAGACCATGTCAAG
* * * *
82605632 AACATGGCATTTGGTAA-GA-TGAGGA-TATCA
63 -ACATGGCA-TCGGCAATGATTAAGGACT-CCA
** *
82605662 TGTAAGACCATGTCAAGACATGGCACTGGTAAGGCAAGGATCCCGTGTAAGACCATGTCAAGACA
1 TGTAAGACCACATCAAGACATGGCATTGGTAAGGCAAGGATCCCGTGTAAGACCATGTCAAGACA
82605727 TGGCATCGGCAATGATTAAGGACTCCA
66 TGGCATCGGCAATGATTAAGGACTCCA
**
82605754 TGTAAGACCACATCAAGATGTGGCATT
1 TGTAAGACCACATCAAGACATGGCATT
82605781 AGCACTAAGA
Statistics
Matches: 163, Mismatches: 42, Indels: 18
0.73 0.19 0.08
Matches are distributed among these distances:
90 5 0.03
91 10 0.06
92 78 0.48
93 1 0.01
94 1 0.01
95 54 0.33
96 10 0.06
97 4 0.02
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (92 bp):
TGTAAGACCACATCAAGACATGGCATTGGTAAGGCAAGGATCCCGTGTAAGACCATGTCAAGACA
TGGCATCGGCAATGATTAAGGACTCCA
Found at i:82605790 original size:187 final size:187
Alignment explanation
Indices: 82605464--82605873 Score: 676
Period size: 187 Copynumber: 2.2 Consensus size: 187
82605454 AATTGATGGT
* * * *
82605464 TAAGGATACCTTGTAAGACCATGTCAAGACATGGCATTGGTAAGGCAAGGATCCCGTGTAAGTCC
1 TAAGGATATCATGTAAGACCATGTCAAGACATGGCACTGGTAAGGCAAGGATCCCGTGTAAGACC
*
82605529 ATGTCAAGACATGGCATCGGCATTGATCAAGGACTCCATGTAAGACCACATCAAGATGTGGCATT
66 ATGTCAAGACATGGCATCGGCAATGATCAAGGACTCCATGTAAGACCACATCAAGATGTGGCATT
* * ** * *
82605594 GGCACTAAGATAAGGATACCATGCAAGGCCATGTTTGGAACATGGCATTTGGTAAGA
131 AGCACTAAGAGAAGGATACCATGCAAAACCACGTTTGGAACATAGCATTTGGTAAGA
*
82605651 TGAGGATATCATGTAAGACCATGTCAAGACATGGCACTGGTAAGGCAAGGATCCCGTGTAAGACC
1 TAAGGATATCATGTAAGACCATGTCAAGACATGGCACTGGTAAGGCAAGGATCCCGTGTAAGACC
*
82605716 ATGTCAAGACATGGCATCGGCAATGATTAAGGACTCCATGTAAGACCACATCAAGATGTGGCATT
66 ATGTCAAGACATGGCATCGGCAATGATCAAGGACTCCATGTAAGACCACATCAAGATGTGGCATT
*
82605781 AGCACTAAGAGAAGGATACCATGTAAAACCACGTTTGGAACATAGCATTTGGTAAGA
131 AGCACTAAGAGAAGGATACCATGCAAAACCACGTTTGGAACATAGCATTTGGTAAGA
* *
82605838 TAAGGATATCATGTAAGACCATGCCAAGGCATGGCA
1 TAAGGATATCATGTAAGACCATGTCAAGACATGGCA
82605874 TTGATAAGTT
Statistics
Matches: 206, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
187 206 1.00
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (187 bp):
TAAGGATATCATGTAAGACCATGTCAAGACATGGCACTGGTAAGGCAAGGATCCCGTGTAAGACC
ATGTCAAGACATGGCATCGGCAATGATCAAGGACTCCATGTAAGACCACATCAAGATGTGGCATT
AGCACTAAGAGAAGGATACCATGCAAAACCACGTTTGGAACATAGCATTTGGTAAGA
Found at i:82605873 original size:95 final size:94
Alignment explanation
Indices: 82605464--82605876 Score: 292
Period size: 95 Copynumber: 4.4 Consensus size: 94
82605454 AATTGATGGT
* * * * *
82605464 TAAGGATACCTTGTAAGACCATGTCAAGACATGGCATTG--GTAAG-GCAAGGATCCCGTGTAAG
1 TAAGGATATCATGTAAGACCATGTCAAGACATGGCATTGCACTAAGAG-AAGGATACCATGTAAG
* *** * * *
82605526 TCCATGTCAAG-ACATGGCA-TCGGCATTGA
65 ACCATGTTTGGAACATGGCATTTGGTA-AGA
* ** ** * *
82605555 TCAAGGACT-CCATGTAAGACCACATCAAGATGTGGCATTGGCACTAAGATAAGGATACCATGCA
1 T-AAGGA-TATCATGTAAGACCATGTCAAGACATGGCATT-GCACTAAGAGAAGGATACCATGTA
*
82605619 AGGCCATGTTTGGAACATGGCATTTGGTAAGA
63 AGACCATGTTTGGAACATGGCATTTGGTAAGA
* * * * *
82605651 TGAGGATATCATGTAAGACCATGTCAAGACATGGCACTG--GTAAG-GCAAGGATCCCGTGTAAG
1 TAAGGATATCATGTAAGACCATGTCAAGACATGGCATTGCACTAAGAG-AAGGATACCATGTAAG
*** * *
82605713 ACCATGTCAAG-ACATGGCA-TCGGCAATGA
65 ACCATGTTTGGAACATGGCATTTGGTAA-GA
* ** **
82605742 TTAAGGACT-CCATGTAAGACCACATCAAGATGTGGCATTAGCACTAAGAGAAGGATACCATGTA
1 -TAAGGA-TATCATGTAAGACCATGTCAAGACATGGCATT-GCACTAAGAGAAGGATACCATGTA
* * *
82605806 AAACCACGTTTGGAACATAGCATTTGGTAAGA
63 AGACCATGTTTGGAACATGGCATTTGGTAAGA
* *
82605838 TAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTG
1 TAAGGATATCATGTAAGACCATGTCAAGACATGGCATTG
82605877 ATAAGTTCTA
Statistics
Matches: 242, Mismatches: 60, Indels: 37
0.71 0.18 0.11
Matches are distributed among these distances:
90 5 0.02
91 11 0.05
92 83 0.34
93 4 0.02
94 4 0.02
95 105 0.43
96 21 0.09
97 9 0.04
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (94 bp):
TAAGGATATCATGTAAGACCATGTCAAGACATGGCATTGCACTAAGAGAAGGATACCATGTAAGA
CCATGTTTGGAACATGGCATTTGGTAAGA
Found at i:82605903 original size:54 final size:55
Alignment explanation
Indices: 82605839--82605943 Score: 158
Period size: 54 Copynumber: 1.9 Consensus size: 55
82605829 TTGGTAAGAT
* * *
82605839 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGC
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTAATAAGTTACTATAAGGC
* *
82605893 AAGGAAATCATGTAAGACCATGTCAAGACATGTCATTAATAAGTTACTATA
1 AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTAATAAGTTACTATA
82605944 CGACAAAGGT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
54 40 0.89
55 5 0.11
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (55 bp):
AAGGAAATCATGTAAGACCATGCCAAGACATGGCATTAATAAGTTACTATAAGGC
Found at i:82613642 original size:40 final size:40
Alignment explanation
Indices: 82613587--82613894 Score: 598
Period size: 40 Copynumber: 7.7 Consensus size: 40
82613577 GAGCATTGGA
82613587 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
82613627 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
82613667 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
82613707 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
82613747 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
82613787 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
82613827 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
82613867 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
82613895 ATGTGTTTGC
Statistics
Matches: 266, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 266 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:82621661 original size:40 final size:39
Alignment explanation
Indices: 82621630--82621839 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
82621620 GGACTAAGAT
* *
82621630 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
82621670 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
82621710 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
82621750 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
82621790 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
82621829 CCGAAGGCATT
1 CCGAAGGCATT
82621840 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:82621793 original size:120 final size:120
Alignment explanation
Indices: 82621577--82621839 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
82621567 TTGAATGCTG
* *
82621577 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
82621641 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
82621697 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
82621760 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
82621816 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
82621840 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:82621859 original size:79 final size:80
Alignment explanation
Indices: 82621630--82621874 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
82621620 GGACTAAGAT
* * * * * * * ** *
82621630 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
82621693 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
82621710 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
82621775 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
82621790 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
82621854 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
82621868 CCGAAGG
1 CCGAAGG
82621875 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:82631180 original size:38 final size:38
Alignment explanation
Indices: 82631137--82631430 Score: 183
Period size: 38 Copynumber: 7.0 Consensus size: 38
82631127 TGTCAAATTA
* *
82631137 ACATGTATAACCCTGGCATATCCACTTAGCACTACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* * *
82631175 ACATGTTTAACCGTGGTATATTCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
82631216 GAATCAATTTATGTAACCGTCGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* * *
82631260 ACATGTTTAACCGTGGTATATCCACTTAGTACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
82631301 GAATCAATATATGTAACCGTGGCATATCCAGTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* *
82631345 ACATGTATCAATATGTGTAATCGTGGTATATCCACTTAGCACCACGTT
1 ACATG------TA----TAACCGTGGCATATCCACTTAGCACCACGTT
* * *
82631393 ACACGTATAACCGTGGTATATCTACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
82631431 TTTTTTATTC
Statistics
Matches: 203, Mismatches: 27, Indels: 52
0.72 0.10 0.18
Matches are distributed among these distances:
38 86 0.42
39 2 0.01
40 5 0.02
41 4 0.02
42 4 0.02
43 2 0.01
44 4 0.02
45 6 0.03
46 4 0.02
47 52 0.26
48 34 0.17
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:82631241 original size:85 final size:85
Alignment explanation
Indices: 82631152--82631350 Score: 344
Period size: 85 Copynumber: 2.3 Consensus size: 85
82631142 TATAACCCTG
* *
82631152 GCATATCCACTTAGCACTACGTTACATGTTTAACCGTGGTATATTCACTTAGCACCACGTTAATG
1 GCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATG
*
82631217 AATCAATTTATGTAACCGTC
66 AATCAATATATGTAACCGTC
*
82631237 GCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGTACCACGTTAATG
1 GCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATG
*
82631302 AATCAATATATGTAACCGTG
66 AATCAATATATGTAACCGTC
*
82631322 GCATATCCAGTTAGCACCACGTTACATGT
1 GCATATCCACTTAGCACCACGTTACATGT
82631351 ATCAATATGT
Statistics
Matches: 108, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 108 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (85 bp):
GCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATG
AATCAATATATGTAACCGTC
Found at i:82631251 original size:47 final size:47
Alignment explanation
Indices: 82631182--82631393 Score: 253
Period size: 47 Copynumber: 4.7 Consensus size: 47
82631172 GTTACATGTT
* *
82631182 TAACCGTGGTATATTCACTTAGCACCACGTTAATGAATCAATTTATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * *
82631229 TAACCGTCGCATATCCACTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
82631267 TAACCGTGGTATATCCACTTAGTACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * * *
82631314 TAACCGTGGCATATCCAGTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
*
82631362 TAATCGTGGTATATCCACTTAGCACCACGTTA
1 TAACCGTGGTATATCCACTTAGCACCACGTTA
82631394 CACGTATAAC
Statistics
Matches: 139, Mismatches: 16, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
38 26 0.19
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 2 0.01
47 55 0.40
48 42 0.30
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (47 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:82631370 original size:48 final size:48
Alignment explanation
Indices: 82631262--82631400 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
82631252 ACCACGTTAC
* * *
82631262 ATGTTTAACCGTGGTATATCCACTTAGTACCACGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * *
82631309 ATATGTAACCGTGGCATATCCAGTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
82631357 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
82631401 AACCGTGGTA
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 32 0.40
48 48 0.60
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.32
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:82631388 original size:133 final size:132
Alignment explanation
Indices: 82631182--82631430 Score: 372
Period size: 133 Copynumber: 1.9 Consensus size: 132
82631172 GTTACATGTT
* * *
82631182 TAACCGTGGTATATTCACTTAGCACCACGTTAATGAATCAATTTATGTAACCGTCGCATATCCAC
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTCGCATATCCAC
* * *
82631247 TTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGTACCACGTTAATGAATCAATATA
66 TTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
82631312 TG
131 TG
* * * * * *
82631314 TAACCGTGGCATATCCAGTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCGTCGCATATCCA
*
82631379 CTTAGCACCACGTTACACGTATAACCGTGGTATATCTACTTAGCACCACGTT
65 CTTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCACGTT
82631431 TTTTTTATTC
Statistics
Matches: 103, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
132 29 0.28
133 74 0.72
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (132 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTCGCATATCCAC
TTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
TG
Found at i:82632612 original size:332 final size:332
Alignment explanation
Indices: 82632006--82632671 Score: 1332
Period size: 332 Copynumber: 2.0 Consensus size: 332
82631996 ATTTGCATTT
82632006 TTGCCCCAAGGTTTGGAATTTAAACTTCTTCCTATTTTCTTATGTTTTATGACATGCTGATCATT
1 TTGCCCCAAGGTTTGGAATTTAAACTTCTTCCTATTTTCTTATGTTTTATGACATGCTGATCATT
82632071 TTTTCCTTCTATAGGAACATCAAATTATCACTCTAACATGTACTTATGAACATTAGGTATTTTTA
66 TTTTCCTTCTATAGGAACATCAAATTATCACTCTAACATGTACTTATGAACATTAGGTATTTTTA
82632136 CTAATTATGTCGTTTTACTCATTTTCACGTAAAATCGCTTAGCAAAAGTTGTTTAACACAATTTA
131 CTAATTATGTCGTTTTACTCATTTTCACGTAAAATCGCTTAGCAAAAGTTGTTTAACACAATTTA
82632201 AAGCTTCATATTCTACCATTAAACATCAAAATACATGCATATCATTTATGGGTAAATTTTTAAAC
196 AAGCTTCATATTCTACCATTAAACATCAAAATACATGCATATCATTTATGGGTAAATTTTTAAAC
82632266 ATAAATCCTAGCTCAAAATAATGGTAGAAATGAGCAGATCATGTTACCGGGATTTCAAAAATACA
261 ATAAATCCTAGCTCAAAATAATGGTAGAAATGAGCAGATCATGTTACCGGGATTTCAAAAATACA
82632331 TAGAACA
326 TAGAACA
82632338 TTGCCCCAAGGTTTGGAATTTAAACTTCTTCCTATTTTCTTATGTTTTATGACATGCTGATCATT
1 TTGCCCCAAGGTTTGGAATTTAAACTTCTTCCTATTTTCTTATGTTTTATGACATGCTGATCATT
82632403 TTTTCCTTCTATAGGAACATCAAATTATCACTCTAACATGTACTTATGAACATTAGGTATTTTTA
66 TTTTCCTTCTATAGGAACATCAAATTATCACTCTAACATGTACTTATGAACATTAGGTATTTTTA
82632468 CTAATTATGTCGTTTTACTCATTTTCACGTAAAATCGCTTAGCAAAAGTTGTTTAACACAATTTA
131 CTAATTATGTCGTTTTACTCATTTTCACGTAAAATCGCTTAGCAAAAGTTGTTTAACACAATTTA
82632533 AAGCTTCATATTCTACCATTAAACATCAAAATACATGCATATCATTTATGGGTAAATTTTTAAAC
196 AAGCTTCATATTCTACCATTAAACATCAAAATACATGCATATCATTTATGGGTAAATTTTTAAAC
82632598 ATAAATCCTAGCTCAAAATAATGGTAGAAATGAGCAGATCATGTTACCGGGATTTCAAAAATACA
261 ATAAATCCTAGCTCAAAATAATGGTAGAAATGAGCAGATCATGTTACCGGGATTTCAAAAATACA
82632663 TAGAACA
326 TAGAACA
82632670 TT
1 TT
82632672 AAAAATGAAG
Statistics
Matches: 334, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
332 334 1.00
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (332 bp):
TTGCCCCAAGGTTTGGAATTTAAACTTCTTCCTATTTTCTTATGTTTTATGACATGCTGATCATT
TTTTCCTTCTATAGGAACATCAAATTATCACTCTAACATGTACTTATGAACATTAGGTATTTTTA
CTAATTATGTCGTTTTACTCATTTTCACGTAAAATCGCTTAGCAAAAGTTGTTTAACACAATTTA
AAGCTTCATATTCTACCATTAAACATCAAAATACATGCATATCATTTATGGGTAAATTTTTAAAC
ATAAATCCTAGCTCAAAATAATGGTAGAAATGAGCAGATCATGTTACCGGGATTTCAAAAATACA
TAGAACA
Found at i:82633372 original size:38 final size:38
Alignment explanation
Indices: 82633320--82633395 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
82633310 TGTAATTTGT
*
82633320 CTTAGATCAGCTCATCATCCAACATTTTTATTTTTCTA
1 CTTAGATCAACTCATCATCCAACATTTTTATTTTTCTA
* *
82633358 CTTAGATCAACTCATCATCCCATATTTTTATTTTTCTA
1 CTTAGATCAACTCATCATCCAACATTTTTATTTTTCTA
82633396 TCTCATGTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.26, C:0.24, G:0.04, T:0.46
Consensus pattern (38 bp):
CTTAGATCAACTCATCATCCAACATTTTTATTTTTCTA
Found at i:82641341 original size:20 final size:20
Alignment explanation
Indices: 82641316--82641356 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
82641306 ACTGTTTCTT
82641316 TTAAATATAGTCTAAGTTCA
1 TTAAATATAGTCTAAGTTCA
82641336 TTAAATATAGTCTAAGTTCA
1 TTAAATATAGTCTAAGTTCA
82641356 T
1 T
82641357 ACACCCTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (20 bp):
TTAAATATAGTCTAAGTTCA
Found at i:82644982 original size:73 final size:73
Alignment explanation
Indices: 82644852--82644999 Score: 242
Period size: 73 Copynumber: 2.0 Consensus size: 73
82644842 AGTTAGACAG
* *
82644852 GATTCACGATGTTTTTCACGTCTCCATGTTAAGGCGTTATCGTGCTGACCCTGCTCATGTCCTGC
1 GATTCACGATGTTTTTCACGTCTCCATGTTAAGGCGTTATCGTGCTAACCCTACTCATGTCCTGC
82644917 CAGTTGCA
66 CAGTTGCA
* * * *
82644925 GATTCACGATGTTTTTCACGTCTCCATGTTAAGGTGTTATCGTTCTAATCCTACTCATGTCGTGC
1 GATTCACGATGTTTTTCACGTCTCCATGTTAAGGCGTTATCGTGCTAACCCTACTCATGTCCTGC
82644990 CAGTTGCA
66 CAGTTGCA
82644998 GA
1 GA
82645000 AATTGAAGTT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
73 69 1.00
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (73 bp):
GATTCACGATGTTTTTCACGTCTCCATGTTAAGGCGTTATCGTGCTAACCCTACTCATGTCCTGC
CAGTTGCA
Found at i:82652097 original size:39 final size:39
Alignment explanation
Indices: 82652043--82652121 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
82652033 TTCAAAGTAC
82652043 ATCTTGAATATTGTTGAGTCTAGTGTTTCGGAGAATTTT
1 ATCTTGAATATTGTTGAGTCTAGTGTTTCGGAGAATTTT
*
82652082 ATCTTGAATATTGTTGAGTCTAGTGTTTGGGAGAATTTT
1 ATCTTGAATATTGTTGAGTCTAGTGTTTCGGAGAATTTT
82652121 A
1 A
82652122 AGATCATTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.24, C:0.06, G:0.24, T:0.46
Consensus pattern (39 bp):
ATCTTGAATATTGTTGAGTCTAGTGTTTCGGAGAATTTT
Found at i:82653265 original size:29 final size:31
Alignment explanation
Indices: 82653232--82653296 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 31
82653222 TTATCAGGGA
82653232 CTTCAAATGATTGCA-TCATGGGATCTTC-T
1 CTTCAAATGATTGCATTCATGGGATCTTCTT
* **
82653261 CTTCAAATGCTTGCATTTGTGGGATCTTCTT
1 CTTCAAATGATTGCATTCATGGGATCTTCTT
82653292 CTTCA
1 CTTCA
82653297 TCAGGGACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 14 0.45
30 11 0.35
31 6 0.19
ACGTcount: A:0.20, C:0.22, G:0.17, T:0.42
Consensus pattern (31 bp):
CTTCAAATGATTGCATTCATGGGATCTTCTT
Found at i:82666706 original size:50 final size:49
Alignment explanation
Indices: 82666582--82666952 Score: 405
Period size: 50 Copynumber: 7.5 Consensus size: 49
82666572 AGTGTAAGAT
* * * *
82666582 GCCGACGCAATGTCCCAGACATGGTCTTACACTGGCTCAT-AC-ATCAAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACTATCGAG
* *
82666630 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAC-TATCGAG
* *
82666680 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATTGAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAC-TATCGAG
* * *
82666730 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATTGAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAC-TATCGAG
* *
82666780 GTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCTATCG-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-CTATCGAG
* * * * * *
82666829 TGTCAATGCCATGTCCCAGACATGGTCTTACATTGACACAT-ACATGTC-AGG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCAC-TATCGA-G
* *
82666880 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCA-TAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACT-ATCGAG
*
82666928 GCCGACGCCATGTCCCAGACATGGT
1 GCCGATGCCATGTCCCAGACATGGT
82666953 TTTCCACTAG
Statistics
Matches: 280, Mismatches: 31, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
47 1 0.00
48 61 0.22
49 3 0.01
50 212 0.76
51 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACTATCGAG
Found at i:82666761 original size:100 final size:100
Alignment explanation
Indices: 82666582--82666952 Score: 447
Period size: 100 Copynumber: 3.8 Consensus size: 100
82666572 AGTGTAAGAT
* *
82666582 GCCGACGCAATGTCCCAGACATGGTCTTACACTGGCTCAT-ACATCA---AAGTCGATGCCATGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACAT-ATTGAAGTCGATGCCATGT
*
82666643 CCCAGACATGGTCTTACACTGACTCTCACGTATCGAG
64 CCCAGACATGGTCTTACACTGACTCTCACATATCGAG
82666680 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATTGAAGTCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATTGAAGTCGATGCCATGTCC
* * *
82666745 CAGACATGGTCTTACACTGGCTCTCACATATTGAA
66 CAGACATGGTCTTACACTGACTCTCACATATCGAG
* * * ** *
82666780 GTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATC-TATCGGTGTCAATGCCATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-CATATTGAAGTCGATGCCATGTC
* * *
82666844 CCAGACATGGTCTTACATTGACACAT-ACATGTC-AGG
65 CCAGACATGGTCTTACACTGACTC-TCACATATCGA-G
* * * *
82666880 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA-ATGTG--GCCGACGCCATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATAT-TGAAGTCGATGCCATGTC
82666942 CCAGACATGGT
65 CCAGACATGGT
82666953 TTTCCACTAG
Statistics
Matches: 238, Mismatches: 26, Indels: 18
0.84 0.09 0.06
Matches are distributed among these distances:
97 2 0.01
98 62 0.26
99 3 0.01
100 169 0.71
101 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (100 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATTGAAGTCGATGCCATGTCC
CAGACATGGTCTTACACTGACTCTCACATATCGAG
Found at i:82675305 original size:39 final size:40
Alignment explanation
Indices: 82675260--82675427 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
82675250 CGGGGTTTAG
* * *
82675260 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
82675299 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
82675339 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
82675379 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
82675420 CCGGATAT
1 CCGGATAT
82675428 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:82675410 original size:41 final size:40
Alignment explanation
Indices: 82675283--82675427 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
82675273 CTCGCACAAG
* * * * *
82675283 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
82675323 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
82675363 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
82675404 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
82675428 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:82677666 original size:48 final size:48
Alignment explanation
Indices: 82677603--82677774 Score: 204
Period size: 50 Copynumber: 3.5 Consensus size: 48
82677593 TAATGTCCTG
*
82677603 GACATGGTCTTACACTGGCTCAT-ACATCAAAGTCGATGCCATGTCCCA
1 GACATGGTCTTACACTGGCTC-TCACATCAAAGTCAATGCCATGTCCCA
* * * *
82677651 GACGTGGTCTTACACTGACTCTCACGTATCAAGGCCAATGCCATGTCCCA
1 GACATGGTCTTACACTGGCTCTCAC--ATCAAAGTCAATGCCATGTCCCA
* *
82677701 GACATGGTGTTACATTGGCTCTCACAT-ATTGAAGTCAATGCCATGTCCCA
1 GACATGGTCTTACACTGGCTCTCACATCA---AAGTCAATGCCATGTCCCA
*
82677751 GACATGGTGTTACACTGGCTCTCA
1 GACATGGTCTTACACTGGCTCTCA
82677775 TCTACCGGTG
Statistics
Matches: 106, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
47 2 0.02
48 23 0.22
50 81 0.76
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (48 bp):
GACATGGTCTTACACTGGCTCTCACATCAAAGTCAATGCCATGTCCCA
Found at i:82677792 original size:50 final size:49
Alignment explanation
Indices: 82677603--82677914 Score: 187
Period size: 50 Copynumber: 6.3 Consensus size: 49
82677593 TAATGTCCTG
* *
82677603 GACATGGTCTTACACTGGCTCAT-ACAT-CAAAGT-CGATGCCATGTCCCA
1 GACATGGTCTTACACTGGCTC-TCACATAC-AGGTGCAATGCCATGTCCCA
* * * *
82677651 GACGTGGTCTTACACTGACTCTCACGTATCAAGG-CCAATGCCATGTCCCA
1 GACATGGTCTTACACTGGCTCTCACATA-C-AGGTGCAATGCCATGTCCCA
* * * *
82677701 GACATGGTGTTACATTGGCTCTCACATATTGAAGT-CAATGCCATGTCCCA
1 GACATGGTCTTACACTGGCTCTCACATA--CAGGTGCAATGCCATGTCCCA
* * * *
82677751 GACATGGTGTTACACTGGCTCTCATC-TACCGGTGCTGATGCCATGT-CCT
1 GACATGGTCTTACACTGGCTCTCA-CATACAGGTGC-AATGCCATGTCCCA
* * * * * *
82677800 GAACATGGTCTTACACTGACACACACATGTC-GGGGTCGATGCCATGTCCCA
1 G-ACATGGTCTTACACTGGCTCTCACAT-ACAGGTG-CAATGCCATGTCCCA
* * * * * * *
82677851 AATATGGTCTTACGCTAG--CTCACATA-ATGTGGCCGATGACATGTCCCA
1 GACATGGTCTTACACTGGCTCTCACATACAGGT-G-CAATGCCATGTCCCA
82677899 GACATGGTCTTACACT
1 GACATGGTCTTACACT
82677915 AGTGCACATA
Statistics
Matches: 209, Mismatches: 39, Indels: 32
0.75 0.14 0.11
Matches are distributed among these distances:
47 2 0.01
48 58 0.28
49 5 0.02
50 138 0.66
51 6 0.03
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (49 bp):
GACATGGTCTTACACTGGCTCTCACATACAGGTGCAATGCCATGTCCCA
Found at i:82677827 original size:100 final size:100
Alignment explanation
Indices: 82677580--82677863 Score: 265
Period size: 100 Copynumber: 2.8 Consensus size: 100
82677570 AAACATAGGG
** * *
82677580 CAAGATGCTGATGTAATGTCCTGGACATGGTCTTACACTGGCTCATACATCA--AAGTCGATGCC
1 CAAG-TGCTGATGCCATGTCCTGAACATGGTCTTACACTGGCTCACACAT-ATGAAGTCGATGCC
*
82677643 ATGTCCCAGACGTGGTCTTACACTGACTCTCACGTAT
64 ATGTCCCAGACATGGTCTTACACTGACTCTCACGTAT
** * * * * *
82677680 CAAG-GCCAATGCCATGTCC-CAGACATGGTGTTACATTGGCTCTCACATATTGAAGTCAATGCC
1 CAAGTGCTGATGCCATGTCCTGA-ACATGGTCTTACACTGGCTCACACATA-TGAAGTCGATGCC
* *
82677743 ATGTCCCAGACATGGTGTTACACTGGCTCTCATC-TA-
64 ATGTCCCAGACATGGTCTTACACTGACTCTCA-CGTAT
** * * * **
82677779 CCGGTGCTGATGCCATGTCCTGAACATGGTCTTACACTGACACACACATGTCGGGGTCGATGCCA
1 CAAGTGCTGATGCCATGTCCTGAACATGGTCTTACACTGGCTCACACATAT-GAAGTCGATGCCA
* *
82677844 TGTCCCAAATATGGTCTTAC
65 TGTCCCAGACATGGTCTTAC
82677864 GCTAGCTCAC
Statistics
Matches: 145, Mismatches: 31, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
97 1 0.01
98 33 0.23
99 3 0.02
100 106 0.73
101 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (100 bp):
CAAGTGCTGATGCCATGTCCTGAACATGGTCTTACACTGGCTCACACATATGAAGTCGATGCCAT
GTCCCAGACATGGTCTTACACTGACTCTCACGTAT
Found at i:82684833 original size:21 final size:21
Alignment explanation
Indices: 82684794--82684833 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
82684784 TTTGGTTTGG
*
82684794 TTTAATAAGTTTTTCTTAAGA
1 TTTAATAAATTTTTCTTAAGA
82684815 TTTAATAAATTATTT-TTAA
1 TTTAATAAATT-TTTCTTAA
82684834 TTGGATTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (21 bp):
TTTAATAAATTTTTCTTAAGA
Found at i:82687975 original size:22 final size:22
Alignment explanation
Indices: 82687945--82687987 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
82687935 TAGGTGTCGA
82687945 AGTTGATGTATATTTTGATAAC
1 AGTTGATGTATATTTTGATAAC
*
82687967 AGTTTATGTATATTTTGATAA
1 AGTTGATGTATATTTTGATAA
82687988 TATGTGAGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
AGTTGATGTATATTTTGATAAC
Found at i:82689704 original size:40 final size:40
Alignment explanation
Indices: 82689585--82689752 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
82689575 CGGATGATAA
* * *
82689585 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * * *
82689625 CTGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
*
82689665 CCGGGCTAAGACCCGAAGGCATTTGTTCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
82689705 CCGGGATAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
82689745 CC-GGCTAA
1 CCGGGCTAA
82689753 ATCCCAAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 7 0.07
40 97 0.92
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:82690029 original size:22 final size:22
Alignment explanation
Indices: 82689989--82690030 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
82689979 GAATGTGCAT
*
82689989 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
82690011 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
82690031 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:82701107 original size:40 final size:40
Alignment explanation
Indices: 82701013--82701157 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
82701003 TACTCGAATG
*
82701013 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
82701054 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
82701094 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
82701134 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
82701158 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:82708299 original size:40 final size:40
Alignment explanation
Indices: 82708140--82708316 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
82708130 CGGATGATAA
* * *
82708140 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
82708180 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
*
82708220 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
82708260 CCGGGCTAAGACCCAAAGGCATTTGTGCGCGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
82708300 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
82708317 ATACTTCGGT
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 99 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:82708584 original size:22 final size:22
Alignment explanation
Indices: 82708544--82708585 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
82708534 GAATGTGCAT
*
82708544 ATATGAAGTTATGCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
82708566 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
82708586 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:82709874 original size:16 final size:15
Alignment explanation
Indices: 82709849--82709879 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
82709839 TTATGACGCA
82709849 TAATTATAATATAAT
1 TAATTATAATATAAT
82709864 TAATATATAATATAAT
1 TAAT-TATAATATAAT
82709880 AAGACATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TAATTATAATATAAT
Found at i:82711226 original size:22 final size:22
Alignment explanation
Indices: 82711195--82711265 Score: 133
Period size: 22 Copynumber: 3.2 Consensus size: 22
82711185 TGTGCCTCTG
*
82711195 CCACATGGCTGTGTGCCTCCCT
1 CCACACGGCTGTGTGCCTCCCT
82711217 CCACACGGCTGTGTGCCTCCCT
1 CCACACGGCTGTGTGCCTCCCT
82711239 CCACACGGCTGTGTGCCTCCCT
1 CCACACGGCTGTGTGCCTCCCT
82711261 CCACA
1 CCACA
82711266 TGGGCATTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.11, C:0.45, G:0.21, T:0.23
Consensus pattern (22 bp):
CCACACGGCTGTGTGCCTCCCT
Found at i:82714243 original size:19 final size:19
Alignment explanation
Indices: 82714219--82714262 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
82714209 CGAGCTGGCA
**
82714219 CATGTGCATGTGTCCAGAC
1 CATGTGCAAATGTCCAGAC
* *
82714238 CATGTGTAAATGTCCAGGC
1 CATGTGCAAATGTCCAGAC
82714257 CATGTG
1 CATGTG
82714263 GCTTCTGAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (19 bp):
CATGTGCAAATGTCCAGAC
Found at i:82716050 original size:5 final size:6
Alignment explanation
Indices: 82716033--82716169 Score: 55
Period size: 6 Copynumber: 22.0 Consensus size: 6
82716023 AGAACCAACC
* * * * *
82716033 ATAAAA ATAAAA ATAAAA ATAAAA ACATAG TTCAAAA GATAATAA AT-GAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA AT-AAAA -ATAA-AA ATAAAA
** * * *
82716083 ATAAGT CTAAGAAA ATAAAA ATAAAGCA ACTAAAA A-CAAA A-AAAA ATAAAG
1 ATAAAA ATAA-A-A ATAAAA ATAAA--A A-TAAAA ATAAAA ATAAAA ATAAAA
* ** *
82716134 ATAAAA ATAAAG ATTCAA CTAAAA ATAAAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
82716170 TGAAAAAGAA
Statistics
Matches: 93, Mismatches: 28, Indels: 20
0.66 0.20 0.14
Matches are distributed among these distances:
5 12 0.13
6 60 0.65
7 9 0.10
8 8 0.09
9 4 0.04
ACGTcount: A:0.71, C:0.06, G:0.06, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:82716170 original size:5 final size:6
Alignment explanation
Indices: 82716094--82716169 Score: 57
Period size: 6 Copynumber: 12.5 Consensus size: 6
82716084 TAAGTCTAAG
* *
82716094 AAAATA AAAATA AAGCAACTA AAAA-C AAAA-A AAAATA AAGATA AAAATA
1 AAAATA AAAATA AA--AA-TA AAAATA AAAATA AAAATA AAAATA AAAATA
* * * *
82716143 AAGATT CAACTA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
82716170 TGAAAAAGAA
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
5 8 0.15
6 38 0.70
7 2 0.04
8 2 0.04
9 4 0.07
ACGTcount: A:0.75, C:0.07, G:0.04, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:82716175 original size:11 final size:11
Alignment explanation
Indices: 82716094--82716181 Score: 52
Period size: 12 Copynumber: 7.4 Consensus size: 11
82716084 TAAGTCTAAG
82716094 AAAATAAAAAT
1 AAAATAAAAAT
*
82716105 AAAGCAACTAAAAAC
1 -AA--AA-TAAAAAT
82716120 AAAA-AAAAAT
1 AAAATAAAAAT
82716130 AAAGATAAAAAT
1 AAA-ATAAAAAT
** *
82716142 AAAGATTCAACT
1 AAA-ATAAAAAT
82716154 AAAAATAAAAAT
1 -AAAATAAAAAT
*
82716166 AAAATGAAAAAG
1 AAAAT-AAAAAT
82716178 AAAA
1 AAAA
82716182 GAAATAACTC
Statistics
Matches: 60, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
10 8 0.13
11 6 0.10
12 33 0.55
13 3 0.05
14 4 0.07
15 6 0.10
ACGTcount: A:0.75, C:0.06, G:0.06, T:0.14
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:82716175 original size:18 final size:17
Alignment explanation
Indices: 82716094--82716181 Score: 63
Period size: 18 Copynumber: 4.9 Consensus size: 17
82716084 TAAGTCTAAG
82716094 AAAATAAAAATAAAGCAACT
1 AAAATAAAAATAAA--AA-T
82716114 AAAA-ACAAAA-AAAAAT
1 AAAATA-AAAATAAAAAT
*
82716130 AAAGATAAAAATAAAGATT
1 AAA-ATAAAAATAAA-AAT
* *
82716149 CAACTAAAAATAAAAAT
1 AAAATAAAAATAAAAAT
*
82716166 AAAATGAAAAAGAAAA
1 AAAAT-AAAAATAAAA
82716182 GAAATAACTC
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
16 4 0.07
17 12 0.22
18 23 0.42
19 8 0.15
20 8 0.15
ACGTcount: A:0.75, C:0.06, G:0.06, T:0.14
Consensus pattern (17 bp):
AAAATAAAAATAAAAAT
Found at i:82716382 original size:8 final size:8
Alignment explanation
Indices: 82716369--82716397 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
82716359 TATAACAAAT
82716369 AATAATGA
1 AATAATGA
82716377 AATAATGA
1 AATAATGA
82716385 AATAATGA
1 AATAATGA
82716393 AATAA
1 AATAA
82716398 AATAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.10, T:0.24
Consensus pattern (8 bp):
AATAATGA
Found at i:82734291 original size:18 final size:19
Alignment explanation
Indices: 82734268--82734306 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
82734258 CTTGGCCCAT
* *
82734268 TACAGTATC-AATATTCAG
1 TACAGTAACAAATATACAG
82734286 TACAGTAACAAATATACAG
1 TACAGTAACAAATATACAG
82734305 TA
1 TA
82734307 TCAAATCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.28
Consensus pattern (19 bp):
TACAGTAACAAATATACAG
Found at i:82745989 original size:40 final size:40
Alignment explanation
Indices: 82745928--82746055 Score: 181
Period size: 40 Copynumber: 3.2 Consensus size: 40
82745918 GGATTGATAA
*
82745928 CCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82745968 CCGGTG-TAAGTCCCAAAGGCATTTGTACGAGTTACTATAT
1 CCGG-GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
82746008 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
82746048 CC-GGCTAA
1 CCGGGCTAA
82746056 ACCTCGAAGG
Statistics
Matches: 79, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
39 9 0.11
40 69 0.87
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:82746199 original size:39 final size:39
Alignment explanation
Indices: 82746133--82746216 Score: 109
Period size: 39 Copynumber: 2.2 Consensus size: 39
82746123 AATCCCACCG
*
82746133 GGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTATAACC
1 GGCTAAGTCCCGAAGGCAATTGAGCGAG-TAGCTATAACC
* *
82746172 AGGCTAAGT-CCGAAGGCATTTGAGCGAGTAGCTATATCC
1 -GGCTAAGTCCCGAAGGCAATTGAGCGAGTAGCTATAACC
82746211 GGCTAA
1 GGCTAA
82746217 ACCCTGAAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
38 8 0.20
39 24 0.60
40 8 0.20
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCAATTGAGCGAGTAGCTATAACC
Found at i:82746226 original size:39 final size:39
Alignment explanation
Indices: 82746141--82746226 Score: 95
Period size: 39 Copynumber: 2.2 Consensus size: 39
82746131 CGGGCTAAGT
* *
82746141 CCCGAAGGCAATTGTGCGAGTTACTATAACCAGGCTAAG
1 CCCGAAGGCAATTGAGCGAGTTACTATAACCAGGCTAAA
* * *
82746180 TCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGCTAAA
1 CCCGAAGGCAATTGAGCGAGTTA-CTATAACCAGGCTAAA
82746218 CCCTGAAGG
1 CCC-GAAGG
82746227 TACTTGGTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
38 10 0.26
39 29 0.74
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (39 bp):
CCCGAAGGCAATTGAGCGAGTTACTATAACCAGGCTAAA
Found at i:82746240 original size:161 final size:162
Alignment explanation
Indices: 82745974--82746290 Score: 566
Period size: 161 Copynumber: 2.0 Consensus size: 162
82745964 ATATCCGGTG
* * *
82745974 TAAGTCCCAAAGGCATTTGTACGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 TAAGTCCCAAAGGCAATTGTACGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATTTGAGCGAG
82746039 TAGCTATATCCGGCTAAACCTCGAAGGTACTTGGTTTGGGAATGAGCGATCTTGCTGTAATAATT
66 TAGCTATATCCGGCTAAACCTCGAAGGTACTTGGTTTGGGAATGAGCGATCTTGCTGTAATAATT
82746104 TCAATTAACACGCTCGTAAAATCCCACCGGGC
131 TCAATTAACACGCTCGTAAAATCCCACCGGGC
* *
82746136 TAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCAGGCTAAGT-CCGAAGGCATTTGAGCGAG
1 TAAGTCCCAAAGGCAATTGTACGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATTTGAGCGAG
82746200 TAGCTATATCCGGCTAAACC-CTGAAGGTACTTGGTTTGGGAATGAGCGATCTTGCTGTAATAAT
66 TAGCTATATCCGGCTAAACCTC-GAAGGTACTTGGTTTGGGAATGAGCGATCTTGCTGTAATAAT
82746264 TTCAATTAACACGCTCGTAAAATCCCA
130 TTCAATTAACACGCTCGTAAAATCCCA
82746291 ACAATAAGGT
Statistics
Matches: 149, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
160 1 0.01
161 108 0.72
162 40 0.27
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (162 bp):
TAAGTCCCAAAGGCAATTGTACGAGTTACTATAACCAGGCTAAGTCCCGAAGGCATTTGAGCGAG
TAGCTATATCCGGCTAAACCTCGAAGGTACTTGGTTTGGGAATGAGCGATCTTGCTGTAATAATT
TCAATTAACACGCTCGTAAAATCCCACCGGGC
Found at i:82754144 original size:40 final size:40
Alignment explanation
Indices: 82754083--82754210 Score: 181
Period size: 40 Copynumber: 3.2 Consensus size: 40
82754073 GGATTGATAA
*
82754083 CCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
82754123 CCGGTG-TAAGTCCCAAAGGCATTTGTACGAGTTACTATAT
1 CCGG-GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
82754163 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
82754203 CC-GGCTAA
1 CCGGGCTAA
82754211 ACCTCGAAGG
Statistics
Matches: 79, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
39 9 0.11
40 69 0.87
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:82754343 original size:40 final size:40
Alignment explanation
Indices: 82754288--82754374 Score: 124
Period size: 40 Copynumber: 2.2 Consensus size: 40
82754278 AATCCCAACT
*
82754288 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTATAAC
1 CGGGCTAAGTCCCGAAGGCAATTGAGCGAG-TAGCTATAAC
* *
82754328 CGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATC
1 CGGGCTAAGTCCCGAAGGCAATTGAGCGAGTAGCTATAAC
82754368 C-GGCTAA
1 CGGGCTAA
82754375 ACCTCGAAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
39 8 0.19
40 35 0.81
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCAATTGAGCGAGTAGCTATAAC
Found at i:82754384 original size:39 final size:40
Alignment explanation
Indices: 82754288--82754384 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
82754278 AATCCCAACT
* *
82754288 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAAC
1 CGGGCTAAGACCCGAAGGCAATTGAGCGAGTTACTATAAC
* * *
82754328 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 CGGGCTAAGACCCGAAGGCAATTGAGCGAGTTA-CTATAAC
82754368 C-GGCTAA-ACCTCGAAGG
1 CGGGCTAAGACC-CGAAGG
82754385 TACTTGGTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
38 2 0.04
39 14 0.27
40 35 0.69
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.21
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCAATTGAGCGAGTTACTATAAC
Found at i:82754400 original size:164 final size:164
Alignment explanation
Indices: 82754129--82754450 Score: 608
Period size: 164 Copynumber: 2.0 Consensus size: 164
82754119 ATATCCGGTG
* *
82754129 TAAGTCCCAAAGGCATTTGTACGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 TAAGTCCCAAAGGCAATTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
82754194 TAGCTATATCCGGCTAAACCTCGAAGGTACTTGGTTTGGGAATGAGCGATCTTGCTGTAATAATT
66 TAGCTATATCCGGCTAAACCTCGAAGGTACTTGGTTTGGGAATGAGCGATCTTGCTGTAATAATT
82754259 TCAATTAACACGCTCGTAAAATCCCAACTCGGGC
131 TCAATTAACACGCTCGTAAAATCCCAACTCGGGC
* *
82754293 TAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 TAAGTCCCAAAGGCAATTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
82754358 TAGCTATATCCGGCTAAACCTCGAAGGTACTTGGTTTGGGAATGAGCGATCTTGCTGTAATAATT
66 TAGCTATATCCGGCTAAACCTCGAAGGTACTTGGTTTGGGAATGAGCGATCTTGCTGTAATAATT
82754423 TCAATTAACACGCTCGTAAAATCCCAAC
131 TCAATTAACACGCTCGTAAAATCCCAAC
82754451 AATAAGGTAC
Statistics
Matches: 154, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
164 154 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (164 bp):
TAAGTCCCAAAGGCAATTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
TAGCTATATCCGGCTAAACCTCGAAGGTACTTGGTTTGGGAATGAGCGATCTTGCTGTAATAATT
TCAATTAACACGCTCGTAAAATCCCAACTCGGGC
Found at i:82764309 original size:34 final size:33
Alignment explanation
Indices: 82764264--82764335 Score: 92
Period size: 34 Copynumber: 2.2 Consensus size: 33
82764254 TGTTTCAGTA
82764264 ACAGTCCAGTAACAGT-TAGGGCCTTAGCCCAAT
1 ACAGTCCAGTAACAGTGT-GGGCCTTAGCCCAAT
* * *
82764297 ACAGTCTCAGTAATAGTGTGGGCTTTAGCCCATT
1 ACAGTC-CAGTAACAGTGTGGGCCTTAGCCCAAT
82764331 ACAGT
1 ACAGT
82764336 AATAGTAACA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 6 0.18
34 27 0.79
35 1 0.03
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (33 bp):
ACAGTCCAGTAACAGTGTGGGCCTTAGCCCAAT
Found at i:82764407 original size:22 final size:23
Alignment explanation
Indices: 82764368--82764410 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
82764358 GAAGTCCTAC
*
82764368 CCATCCATCCTCTACACTCCACT
1 CCATCCAGCCTCTACACTCCACT
82764391 CCATCCAGCC-CTACACTCCA
1 CCATCCAGCCTCTACACTCCA
82764411 TATAGGAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.53, G:0.02, T:0.21
Consensus pattern (23 bp):
CCATCCAGCCTCTACACTCCACT
Found at i:82767198 original size:48 final size:48
Alignment explanation
Indices: 82767124--82767221 Score: 142
Period size: 48 Copynumber: 2.0 Consensus size: 48
82767114 CTCGAAAGTT
* * ** *
82767124 TCGCATCCTAAGTGTCAATATCATGGCCTGAAGCCAAATCAATTTAAC
1 TCGCACCCTAAGTGCCAATATCATGGCCCAAAGCCAAATCAATGTAAC
*
82767172 TCGCACCCTAAGTGCCAATATTATGGCCCAAAGCCAAATCAATGTAAC
1 TCGCACCCTAAGTGCCAATATCATGGCCCAAAGCCAAATCAATGTAAC
82767220 TC
1 TC
82767222 CAAATGACAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (48 bp):
TCGCACCCTAAGTGCCAATATCATGGCCCAAAGCCAAATCAATGTAAC
Found at i:82767790 original size:21 final size:20
Alignment explanation
Indices: 82767762--82767801 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
82767752 CAAAACTTGT
82767762 GTAACTATCATCAAACATTC
1 GTAACTATCATCAAACATTC
*
82767782 GTAATCTATCATCAATCATT
1 GTAA-CTATCATCAAACATT
82767802 AAAATACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.35
Consensus pattern (20 bp):
GTAACTATCATCAAACATTC
Found at i:82769863 original size:16 final size:16
Alignment explanation
Indices: 82769842--82769877 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
82769832 GTCTAAAGAA
82769842 TAGAGCTCCAATCCTG
1 TAGAGCTCCAATCCTG
82769858 TAGAGCTCCAATCCTG
1 TAGAGCTCCAATCCTG
82769874 TAGA
1 TAGA
82769878 AGCCAGTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (16 bp):
TAGAGCTCCAATCCTG
Found at i:82773388 original size:16 final size:16
Alignment explanation
Indices: 82773367--82773404 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
82773357 GTAGCCAAAC
82773367 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
82773383 TTTCAGCTTTTCGGCT
1 TTTCAGCTTTTCGGCA
82773399 TTTCAG
1 TTTCAG
82773405 GATTTATCGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.11, C:0.24, G:0.18, T:0.47
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:82774406 original size:16 final size:15
Alignment explanation
Indices: 82774381--82774411 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
82774371 AATTCACGAT
82774381 TTTCAGATTTTTGGG
1 TTTCAGATTTTTGGG
82774396 TTTCGAGATTTTTGGG
1 TTTC-AGATTTTTGGG
82774412 GTGTTACAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.13, C:0.06, G:0.29, T:0.52
Consensus pattern (15 bp):
TTTCAGATTTTTGGG
Found at i:82776682 original size:40 final size:40
Alignment explanation
Indices: 82776638--82776729 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
82776628 TGCCTCATGC
* * **
82776638 AGCCGAAGCTATACCATTTCGCACAGTTAGTGTTATTTAT
1 AGCCGAAGCTATACCATTTCCCACACTTAGTCCTATTTAT
82776678 AGCCGAAGCTATACCATTTCCCACACTTAGTCCTATTTAT
1 AGCCGAAGCTATACCATTTCCCACACTTAGTCCTATTTAT
82776718 AGCCGAAGCTAT
1 AGCCGAAGCTAT
82776730 TTTGAATCTC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (40 bp):
AGCCGAAGCTATACCATTTCCCACACTTAGTCCTATTTAT
Found at i:82787853 original size:14 final size:13
Alignment explanation
Indices: 82787828--82787861 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
82787818 CTGGGATATT
82787828 AAAACAATAATTA
1 AAAACAATAATTA
82787841 AAAACACATAATTA
1 AAAACA-ATAATTA
*
82787855 AGAACAA
1 AAAACAA
82787862 GTTAAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.68, C:0.12, G:0.03, T:0.18
Consensus pattern (13 bp):
AAAACAATAATTA
Found at i:82790305 original size:13 final size:13
Alignment explanation
Indices: 82790287--82790313 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82790277 ATGTCGTACG
82790287 CCCGTGCTAGTTT
1 CCCGTGCTAGTTT
82790300 CCCGTGCTAGTTT
1 CCCGTGCTAGTTT
82790313 C
1 C
82790314 TCAGTTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.33, G:0.22, T:0.37
Consensus pattern (13 bp):
CCCGTGCTAGTTT
Found at i:82791270 original size:31 final size:31
Alignment explanation
Indices: 82791235--82791406 Score: 254
Period size: 31 Copynumber: 5.5 Consensus size: 31
82791225 CTTGACCTAT
* *
82791235 ACTGGACCGAAGCCTTTCCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
82791266 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
82791297 ATTGGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* * *
82791328 ATTAGGCCGGAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
82791359 ACTAGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
82791390 ACTGGGCCTAAGCCTTT
1 ACTGGGCCGAAGCCTTT
82791407 AATGTAAACG
Statistics
Matches: 128, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 128 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:82791479 original size:42 final size:42
Alignment explanation
Indices: 82791432--82791521 Score: 144
Period size: 42 Copynumber: 2.1 Consensus size: 42
82791422 GCCCTTAGGC
* *
82791432 CCATTTCAATGTCACATGTAATGCCAATGGATGTATGCAAGA
1 CCATTTCAATATCACATGTAATGCCAATGAATGTATGCAAGA
* *
82791474 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
1 CCATTTCAATATCACATGTAATGCCAATGAATGTATGCAAGA
82791516 CCATTT
1 CCATTT
82791522 TGGGAGACTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (42 bp):
CCATTTCAATATCACATGTAATGCCAATGAATGTATGCAAGA
Found at i:82791683 original size:24 final size:24
Alignment explanation
Indices: 82791656--82791740 Score: 91
Period size: 25 Copynumber: 3.5 Consensus size: 24
82791646 CTGGAGGCCT
82791656 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
82791680 AGCCCTTTCTGATAAACTGGGGCAA
1 AGCCCTTT-TAATAAACTGGGGCAA
** * *
82791705 AGCCCTTTTCGGTAAATTGGGGCAG
1 AGCCCTTTT-AATAAACTGGGGCAA
82791730 AGCCCTTTTAA
1 AGCCCTTTTAA
82791741 CACTTCCTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
23 4 0.08
24 8 0.15
25 40 0.77
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:82791697 original size:25 final size:25
Alignment explanation
Indices: 82791669--82791738 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
82791659 CTCTTTTAAT
82791669 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
82791694 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
82791719 AATTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
82791739 AACACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:82792686 original size:27 final size:27
Alignment explanation
Indices: 82792663--82792906 Score: 231
Period size: 27 Copynumber: 9.0 Consensus size: 27
82792653 TTGGTAAATC
* *
82792663 TACAAACTAAGGGTATTTCAGTAATTT
1 TACAAACTAGGGGTATTTCGGTAATTT
** * ** **
82792690 TGTAAACCAATGGTATTTCTATAATTT
1 TACAAACTAGGGGTATTTCGGTAATTT
* * * *
82792717 CTAAAAAGTCAAGGGTATTTCTGTAATTT
1 -TACAAACT-AGGGGTATTTCGGTAATTT
** *
82792746 TGTAAA-TCAGGGGTATTTTGGTAATTT
1 TACAAACT-AGGGGTATTTCGGTAATTT
*
82792773 TACAAA-TTGAGGGTATTTCGGTAATTT
1 TACAAACTAG-GGGTATTTCGGTAATTT
* *
82792800 CACAAACTAGGGGTATTTCAGTAATTT
1 TACAAACTAGGGGTATTTCGGTAATTT
*
82792827 TACAAACTAGGGGTATTTTGGTAATTT
1 TACAAACTAGGGGTATTTCGGTAATTT
* *
82792854 TACAAACTAGGGGTATTTTGGTTATTT
1 TACAAACTAGGGGTATTTCGGTAATTT
*
82792881 TACAAACTAGGGGTATTTTGGTAATT
1 TACAAACTAGGGGTATTTCGGTAATT
82792907 CTATCCTACA
Statistics
Matches: 184, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
26 1 0.01
27 156 0.85
28 10 0.05
29 17 0.09
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
TACAAACTAGGGGTATTTCGGTAATTT
Found at i:82792932 original size:81 final size:81
Alignment explanation
Indices: 82792656--82792948 Score: 202
Period size: 81 Copynumber: 3.6 Consensus size: 81
82792646 GGGTGTTTTG
* ** * * **
82792656 GTAAATCTACAAACTAAGG-GTATTTCAGTAATTTTGTAAACCA-ATGGTATTTCTATAATTTCT
1 GTAATTCTACAAACT-AGGCGTATTTCAGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTC-
* * * *
82792719 AAAAAGTCAAGGGTATTTCT
63 ACAAACT-AGGGGTATTTCA
* ** * ** *
82792739 GTAATTTTGTAAA-TCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCAC
1 GTAATTCTACAAACT-AGGCGTATTTCAGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCAC
82792803 AAACTAGGGGTATTTCA
65 AAACTAGGGGTATTTCA
* * ** * * *
82792820 GTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTTATTTTAC
1 GTAATTCTACAAACTAGGCGTATTTCAGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCAC
**
82792884 AAACTAGGGGTATTTTG
65 AAACTAGGGGTATTTCA
** * *
82792901 GTAATTCTATCCTAC-AGGCGTATTTCAGTAATTTCAC-AATCGAGGGTA
1 GTAATTCTA-CAAACTAGGCGTATTTCAGTAATTTTACAAATAGAGGGTA
82792949 AAATGGTAAT
Statistics
Matches: 170, Mismatches: 34, Indels: 15
0.78 0.16 0.07
Matches are distributed among these distances:
79 2 0.01
80 7 0.04
81 104 0.61
82 15 0.09
83 42 0.25
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (81 bp):
GTAATTCTACAAACTAGGCGTATTTCAGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACA
AACTAGGGGTATTTCA
Found at i:82793041 original size:27 final size:27
Alignment explanation
Indices: 82792938--82793054 Score: 128
Period size: 27 Copynumber: 4.3 Consensus size: 27
82792928 GTAATTTCAC
* *
82792938 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
82792965 GA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
* * * *
82792992 AATTGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
82793019 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
82793046 AATCGAGGG
1 AATCGAGGG
82793055 CATTTCAGTA
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 74 0.99
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:82796470 original size:20 final size:20
Alignment explanation
Indices: 82796436--82796487 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
82796426 AATGAAAAAG
*
82796436 GGAATAATC-GAAGACGAAT
1 GGAATCATCAGAAGACGAAT
*
82796455 GGCATCATCAGAAGACGAAT
1 GGAATCATCAGAAGACGAAT
82796475 GGAATCATCAGAA
1 GGAATCATCAGAA
82796488 ATGCCATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 7 0.24
20 22 0.76
ACGTcount: A:0.44, C:0.15, G:0.25, T:0.15
Consensus pattern (20 bp):
GGAATCATCAGAAGACGAAT
Found at i:82796816 original size:39 final size:39
Alignment explanation
Indices: 82796762--82796842 Score: 128
Period size: 39 Copynumber: 2.1 Consensus size: 39
82796752 TTTTCAGCCA
*
82796762 TCTCTTTGATTGGGGGTTGAGTATCGTATTCTTGCTCGT
1 TCTCTTTGATTGGGGGTTGAGTATCGTATTCTTACTCGT
*
82796801 TCTCTTTTG-TTGGGGGTTGAGTATCGTCTTCTTACTCGT
1 TCTC-TTTGATTGGGGGTTGAGTATCGTATTCTTACTCGT
82796840 TCT
1 TCT
82796843 TTGTGTATCT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 35 0.90
40 4 0.10
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.48
Consensus pattern (39 bp):
TCTCTTTGATTGGGGGTTGAGTATCGTATTCTTACTCGT
Found at i:82807646 original size:3 final size:3
Alignment explanation
Indices: 82807638--82807676 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
82807628 TCAGAGCTAC
* *
82807638 TGA TGA TGA TGA TGA TGA TGA TGA TGT TGA TGA TAA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
82807677 GCGAGCTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.33, C:0.00, G:0.31, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:82812657 original size:15 final size:15
Alignment explanation
Indices: 82812637--82812666 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
82812627 ATTATGAAAG
82812637 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
82812652 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
82812667 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:82815066 original size:308 final size:308
Alignment explanation
Indices: 82814506--82815119 Score: 1183
Period size: 308 Copynumber: 2.0 Consensus size: 308
82814496 TTTAAGAAAA
82814506 CTAATGCTTAGGCATATAAGGCTTATAATTAATTGTGACCGAATGATAATATAAGAATGGATGCG
1 CTAATGCTTAGGCATATAAGGCTTATAATTAATTGTGACCGAATGATAATATAAGAATGGATGCG
82814571 GTGCAGTGGCCAGCGGTGTTTGGGGAGGTAGAGTAACCTTGAGGTTTGGAGTTTAAGTGGAGGCG
66 GTGCAGTGGCCAGCGGTGTTTGGGGAGGTAGAGTAACCTTGAGGTTTGGAGTTTAAGTGGAGGCG
82814636 CGCGCAGAGGGAGAATTTAATTTTTCTATTCAAGTGCTGTACAGTGGAAGCAATTTGAATGCAAT
131 CGCGCAGAGGGAGAATTTAATTTTTCTATTCAAGTGCTGTACAGTGGAAGCAATTTGAATGCAAT
*
82814701 TCAAATTGGAATTTTTGGCTAAAATCAAGGGGATTAGGATGAGGATTAAGTGTAAATATGATGGT
196 TCAAATTGGAATTTTTGGCTAAAATCAAGGGGATTAGGATGAGGATTAAGGGTAAATATGATGGT
*
82814766 GATAAAATTGTAGAATTTGAAAGGAAATTATCTTGACGAGTTTAAGTC
261 GATAAAATTGGAGAATTTGAAAGGAAATTATCTTGACGAGTTTAAGTC
82814814 CTAATGCTTAGGCATATAAGGCTTATAATTAATTGTGACCGAATGATAATATAAGAATGGATGCG
1 CTAATGCTTAGGCATATAAGGCTTATAATTAATTGTGACCGAATGATAATATAAGAATGGATGCG
82814879 GTGCAGTGGCCAGCGGTGTTTGGGGAGGTAGAGTAACCTTGAGGTTTGGAGTTTAAGTGGAGGCG
66 GTGCAGTGGCCAGCGGTGTTTGGGGAGGTAGAGTAACCTTGAGGTTTGGAGTTTAAGTGGAGGCG
82814944 CGCGCAGAGGGAGAATTTAATTTTTCTATTCAAGTGCTGTACAGTGGAAGCAATTTGAATGCAAT
131 CGCGCAGAGGGAGAATTTAATTTTTCTATTCAAGTGCTGTACAGTGGAAGCAATTTGAATGCAAT
*
82815009 TCAAATTGGAATTTTTGGCTAAAATCAAGGGGATTAGGATGAGGGTTAAGGGTAAATATGATGGT
196 TCAAATTGGAATTTTTGGCTAAAATCAAGGGGATTAGGATGAGGATTAAGGGTAAATATGATGGT
* *
82815074 GATAAAATTGGAGAATTTGAAGGGAAATTATCTTGATGAGTTTAAG
261 GATAAAATTGGAGAATTTGAAAGGAAATTATCTTGACGAGTTTAAG
82815120 CTGATTGAGG
Statistics
Matches: 301, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
308 301 1.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (308 bp):
CTAATGCTTAGGCATATAAGGCTTATAATTAATTGTGACCGAATGATAATATAAGAATGGATGCG
GTGCAGTGGCCAGCGGTGTTTGGGGAGGTAGAGTAACCTTGAGGTTTGGAGTTTAAGTGGAGGCG
CGCGCAGAGGGAGAATTTAATTTTTCTATTCAAGTGCTGTACAGTGGAAGCAATTTGAATGCAAT
TCAAATTGGAATTTTTGGCTAAAATCAAGGGGATTAGGATGAGGATTAAGGGTAAATATGATGGT
GATAAAATTGGAGAATTTGAAAGGAAATTATCTTGACGAGTTTAAGTC
Found at i:82815943 original size:16 final size:16
Alignment explanation
Indices: 82815922--82815960 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
82815912 GTAGATCGGC
* * *
82815922 AAAAGCTGAAATGCTG
1 AAAAGCCGAAATACCG
82815938 AAAAGCCGAAATACCG
1 AAAAGCCGAAATACCG
82815954 AAAAGCC
1 AAAAGCC
82815961 AAAAGTTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.21, G:0.21, T:0.10
Consensus pattern (16 bp):
AAAAGCCGAAATACCG
Found at i:82816262 original size:28 final size:28
Alignment explanation
Indices: 82816178--82816267 Score: 128
Period size: 29 Copynumber: 3.1 Consensus size: 28
82816168 TAAGCATGAC
82816178 TATAAATGTGAATTGGGCCT-GATGGGCCA
1 TATAAATGTG-ATTGGGCCTAG-TGGGCCA
* *
82816207 TATAAATGTGATTTGGGCCTAATAGGCCA
1 TATAAATGTGA-TTGGGCCTAGTGGGCCA
82816236 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
82816264 TATA
1 TATA
82816268 CAAGTACGTG
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
28 20 0.36
29 35 0.64
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:82831136 original size:79 final size:80
Alignment explanation
Indices: 82830922--82831186 Score: 358
Period size: 80 Copynumber: 3.3 Consensus size: 80
82830912 GCTACTCGTT
* **
82830922 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
*
82830985 AGATTTAGTAACTCGCA
64 GGATTTAGTAACTCGCA
* *
82831002 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
*
82831067 ATTTAGTAACTCGTA
66 ATTTAGTAACTCGCA
* *
82831082 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
* * * *
82831146 ATATGGTCACTTAGCA
66 ATTTAGTAAC-TCGCA
82831162 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82831187 CATCATTCAA
Statistics
Matches: 165, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
79 65 0.39
80 98 0.59
81 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
ATTTAGTAACTCGCA
Found at i:82831186 original size:40 final size:40
Alignment explanation
Indices: 82830903--82831186 Score: 319
Period size: 40 Copynumber: 7.1 Consensus size: 40
82830893 CGGAATTTAA
** *
82830903 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
82830943 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
82830983 CCAGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
82831023 CCGGATTTAGTAACTCGTACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
82831063 CCGGATTTAGTAACTCGTACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
82831102 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
82831142 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
82831182 CCGGA
1 CCGGA
82831187 CATCATTCAA
Statistics
Matches: 213, Mismatches: 22, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 35 0.16
40 162 0.76
41 14 0.07
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:82835404 original size:79 final size:79
Alignment explanation
Indices: 82835305--82835461 Score: 314
Period size: 79 Copynumber: 2.0 Consensus size: 79
82835295 GAACGTATTT
82835305 ATTACCAGTTGATACTGTGAAGTCGTATAATCCTATGCTTTACTCGAATCTTCAGCGAAACCTTT
1 ATTACCAGTTGATACTGTGAAGTCGTATAATCCTATGCTTTACTCGAATCTTCAGCGAAACCTTT
82835370 AGCTCGAATAGTCC
66 AGCTCGAATAGTCC
82835384 ATTACCAGTTGATACTGTGAAGTCGTATAATCCTATGCTTTACTCGAATCTTCAGCGAAACCTTT
1 ATTACCAGTTGATACTGTGAAGTCGTATAATCCTATGCTTTACTCGAATCTTCAGCGAAACCTTT
82835449 AGCTCGAATAGTC
66 AGCTCGAATAGTC
82835462 ACCACACGTA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (79 bp):
ATTACCAGTTGATACTGTGAAGTCGTATAATCCTATGCTTTACTCGAATCTTCAGCGAAACCTTT
AGCTCGAATAGTCC
Found at i:82835628 original size:48 final size:48
Alignment explanation
Indices: 82835572--82835848 Score: 437
Period size: 48 Copynumber: 5.8 Consensus size: 48
82835562 TGTTACAACA
* *
82835572 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
82835620 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
82835668 TTCACATTCGTCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
82835716 TTCACATTAGCCATTCGGCTTTACCACATACACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
82835764 TTCACATTAGCCATTCGGCTTTACCACATACACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
82835812 TTCACATTAGCCATTCGGCTTCACCACACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
82835849 TTATCTTGTA
Statistics
Matches: 214, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 214 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:82843998 original size:26 final size:26
Alignment explanation
Indices: 82843969--82844092 Score: 83
Period size: 27 Copynumber: 4.7 Consensus size: 26
82843959 TTAGTTTACC
*
82843969 AAATTACTGAAATACCCCCAGTTGTA
1 AAATTACTGAAATACCCCCAGTTATA
* *
82843995 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCCC-AGTTATA
** * * *
82844022 AAATTACCCAAATATCCTCAATTTATA
1 AAATTACTGAAATA-CCCCCAGTTATA
**
82844049 AAATTA-TCGAAATACCCTTAGTT-TGCA
1 AAATTACT-GAAATACCCCCAGTTAT--A
82844076 AAATTACTGAAATACCC
1 AAATTACTGAAATACCC
82844093 TCGACATGTA
Statistics
Matches: 79, Mismatches: 11, Indels: 15
0.75 0.10 0.14
Matches are distributed among these distances:
25 4 0.05
26 19 0.24
27 48 0.61
28 8 0.10
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (26 bp):
AAATTACTGAAATACCCCCAGTTATA
Found at i:82844144 original size:26 final size:27
Alignment explanation
Indices: 82844115--82844171 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
82844105 ATTATCAAAG
82844115 TACCATCGAATTACA-AATTACTATTT
1 TACCATCGAATTACAGAATTACTATTT
* * *
82844141 TACCCTCGATTTATAGAATTACTATTT
1 TACCATCGAATTACAGAATTACTATTT
82844168 TACC
1 TACC
82844172 CCCGATTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 12 0.44
27 15 0.56
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.40
Consensus pattern (27 bp):
TACCATCGAATTACAGAATTACTATTT
Found at i:82844164 original size:27 final size:27
Alignment explanation
Indices: 82844129--82844189 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
82844119 ATCGAATTAC
*
82844129 AAATTACTATTTTACCCTCGATTTATA
1 AAATTACTATTTTACCCCCGATTTATA
*
82844156 GAATTACTATTTTACCCCCGATTTATA
1 AAATTACTATTTTACCCCCGATTTATA
82844183 AAATTAC
1 AAATTAC
82844190 CCAAATATCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.34, C:0.20, G:0.05, T:0.41
Consensus pattern (27 bp):
AAATTACTATTTTACCCCCGATTTATA
Found at i:82844272 original size:161 final size:161
Alignment explanation
Indices: 82844007--82844494 Score: 890
Period size: 161 Copynumber: 3.0 Consensus size: 161
82843997 ATTACCAAAG
82844007 TACCCCCGATTTATAAAATTACCCAAATATCCTCAATTTATAAAATTATCGAAATACCCTTAGTT
1 TACCCCCGATTTATAAAATTACCCAAATATCCTCAATTTATAAAATTATCGAAATACCCTTAGTT
*
82844072 TGCAAAATTACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCATCGAATTACAAATTACT
66 TGCAAAATTACTGAAATACTCTCGACATGTAAAATTATCAAAGTACCATCGAATTACAAATTACT
82844137 ATTTTACCCTCGATTTATAGAATTACTATTT
131 ATTTTACCCTCGATTTATAGAATTACTATTT
82844168 TACCCCCGATTTATAAAATTACCCAAATATCCTCAATTTATAAAATTATCGAAATACCCTTAGTT
1 TACCCCCGATTTATAAAATTACCCAAATATCCTCAATTTATAAAATTATCGAAATACCCTTAGTT
82844233 TGCAAAATTACTGAAATACTCTCGACATGTAAAATTATCAAAGTACCATCGAATTACAAATTACT
66 TGCAAAATTACTGAAATACTCTCGACATGTAAAATTATCAAAGTACCATCGAATTACAAATTACT
82844298 ATTTTACCCTCGATTTATAGAATTACTATTT
131 ATTTTACCCTCGATTTATAGAATTACTATTT
82844329 TACCCCCGATTTATAAAATTACCCAAATATCCTCAATTTATAAAATTATCGAAATACCCTTAGTT
1 TACCCCCGATTTATAAAATTACCCAAATATCCTCAATTTATAAAATTATCGAAATACCCTTAGTT
*
82844394 TGCAAAATTACTGAAATACTCTCGACATGTAAAATTATCAAAGTACCATTCGATTTACAAAATTA
66 TGCAAAATTACTGAAATACTCTCGACATGTAAAATTATCAAAGTACCA-TCGAATTAC-AAATTA
* **
82844459 CTGTTTTA-CCTCGATTTACT-GAATTACCGTTT
129 CTATTTTACCCTCGATTTA-TAGAATTACTATTT
82844491 TACC
1 TACC
82844495 TTCAATTGAC
Statistics
Matches: 319, Mismatches: 5, Indels: 5
0.97 0.02 0.02
Matches are distributed among these distances:
161 273 0.86
162 32 0.10
163 14 0.04
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.35
Consensus pattern (161 bp):
TACCCCCGATTTATAAAATTACCCAAATATCCTCAATTTATAAAATTATCGAAATACCCTTAGTT
TGCAAAATTACTGAAATACTCTCGACATGTAAAATTATCAAAGTACCATCGAATTACAAATTACT
ATTTTACCCTCGATTTATAGAATTACTATTT
Found at i:82844305 original size:26 final size:27
Alignment explanation
Indices: 82844276--82844332 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
82844266 ATTATCAAAG
82844276 TACCATCGAATTACA-AATTACTATTT
1 TACCATCGAATTACAGAATTACTATTT
* * *
82844302 TACCCTCGATTTATAGAATTACTATTT
1 TACCATCGAATTACAGAATTACTATTT
82844329 TACC
1 TACC
82844333 CCCGATTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 12 0.44
27 15 0.56
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.40
Consensus pattern (27 bp):
TACCATCGAATTACAGAATTACTATTT
Found at i:82844325 original size:27 final size:27
Alignment explanation
Indices: 82844290--82844350 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
82844280 ATCGAATTAC
*
82844290 AAATTACTATTTTACCCTCGATTTATA
1 AAATTACTATTTTACCCCCGATTTATA
*
82844317 GAATTACTATTTTACCCCCGATTTATA
1 AAATTACTATTTTACCCCCGATTTATA
82844344 AAATTAC
1 AAATTAC
82844351 CCAAATATCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.34, C:0.20, G:0.05, T:0.41
Consensus pattern (27 bp):
AAATTACTATTTTACCCCCGATTTATA
Found at i:82844472 original size:54 final size:54
Alignment explanation
Indices: 82844208--82844461 Score: 137
Period size: 54 Copynumber: 4.7 Consensus size: 54
82844198 CCTCAATTTA
* *
82844208 TAAAATTATCGAAATACCCTTAGTTTGCAAAATTACTGAAATACTCTCGACATG
1 TAAAATTATCGAAATACCATTAGTTTACAAAATTACTGAAATACTCTCGACATG
* * ** * ** *
82844262 TAAAATTATC-AAAGTACCA-TCGAATTAC-AAATTACT-ATTTTACCCTCGATTTA
1 TAAAATTATCGAAA-TACCATTAG-TTTACAAAATTACTGA-AATACTCTCGACATG
* * ** *** * ** * ** *
82844315 TAGAATTA-CTATTTTACC-CCCGATTTATAAAATTACCCAAATA-TCCTCAATTTA
1 TAAAATTATCGA-AATACCATTAG-TTTACAAAATTACTGAAATACT-CTCGACATG
* *
82844369 TAAAATTATCGAAATACCCTTAGTTTGCAAAATTACTGAAATACTCTCGACATG
1 TAAAATTATCGAAATACCATTAGTTTACAAAATTACTGAAATACTCTCGACATG
*
82844423 TAAAATTATC-AAAGTACCATTCGATTTACAAAATTACTG
1 TAAAATTATCGAAA-TACCATTAG-TTTACAAAATTACTG
82844462 TTTTACCTCG
Statistics
Matches: 147, Mismatches: 39, Indels: 27
0.69 0.18 0.13
Matches are distributed among these distances:
52 2 0.01
53 43 0.29
54 83 0.56
55 19 0.13
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.34
Consensus pattern (54 bp):
TAAAATTATCGAAATACCATTAGTTTACAAAATTACTGAAATACTCTCGACATG
Found at i:82844518 original size:27 final size:27
Alignment explanation
Indices: 82844443--82844792 Score: 434
Period size: 27 Copynumber: 13.0 Consensus size: 27
82844433 AAAGTACCAT
*
82844443 TCGATTTACAAAATTACTGTTTTA-CC
1 TCGATTTACAGAATTACTGTTTTACCC
* * *
82844469 TCGATTTACTGAATTACCGTTTTACCT
1 TCGATTTACAGAATTACTGTTTTACCC
* * *
82844496 TCAATTGACAGAATTACTATTTTACCC
1 TCGATTTACAGAATTACTGTTTTACCC
* *
82844523 TCGATTTATAGAATTACTATTTTACCC
1 TCGATTTACAGAATTACTGTTTTACCC
* *
82844550 TCGATTTACAAAATTACTATTTTACCC
1 TCGATTTACAGAATTACTGTTTTACCC
82844577 TCGATTTACAGAATTA-TCGTTTTACCC
1 TCGATTTACAGAATTACT-GTTTTACCC
* *
82844604 TCGATTTACAAAATTACTATTTTACCC
1 TCGATTTACAGAATTACTGTTTTACCC
* *
82844631 TTGATTTGCAGAATTACTGTTTTACCC
1 TCGATTTACAGAATTACTGTTTTACCC
*
82844658 TCGATTGACAGAATTACTGTTTTACCC
1 TCGATTTACAGAATTACTGTTTTACCC
* * *
82844685 TCGATTTACAAAACTACTGATTTACCC
1 TCGATTTACAGAATTACTGTTTTACCC
* *
82844712 TCGATTTACAAAATTACTGTTTTCCCC
1 TCGATTTACAGAATTACTGTTTTACCC
* *
82844739 TTGATTTACAGAATTACCGTTTTACCC
1 TCGATTTACAGAATTACTGTTTTACCC
* * **
82844766 TCGATTTATAAAATTACCATTTTACCC
1 TCGATTTACAGAATTACTGTTTTACCC
82844793 CTAGGGTGTT
Statistics
Matches: 280, Mismatches: 41, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
26 22 0.08
27 257 0.92
28 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TCGATTTACAGAATTACTGTTTTACCC
Found at i:82845146 original size:33 final size:32
Alignment explanation
Indices: 82845096--82845159 Score: 76
Period size: 33 Copynumber: 2.0 Consensus size: 32
82845086 TTCGCTGCAA
*
82845096 TCTGGTGGCTTCACCACATATATATATATCTGT
1 TCTGGTGGCCTCACCACA-ATATATATATCTGT
* *
82845129 TCTGGTGGCCT-AGCCACAATATCTGTATCTG
1 TCTGGTGGCCTCA-CCACAATATATATATCTG
82845160 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 12 0.44
33 15 0.56
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTCACCACAATATATATATCTGT
Found at i:82845173 original size:27 final size:26
Alignment explanation
Indices: 82845121--82845178 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
82845111 ACATATATAT
*
82845121 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
82845147 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
82845174 ATATC
1 ATATC
82845179 AGGCAGCCTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 8 0.30
27 19 0.70
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:82845369 original size:37 final size:37
Alignment explanation
Indices: 82845327--82845414 Score: 149
Period size: 37 Copynumber: 2.4 Consensus size: 37
82845317 TTACCTAATA
82845327 CTGATTCTAATTCTAATTCTGTCACCTAATTCTGATT
1 CTGATTCTAATTCTAATTCTGTCACCTAATTCTGATT
* *
82845364 TTGATTCTAATTCTAATTCTGTCACCTGATTCTGATT
1 CTGATTCTAATTCTAATTCTGTCACCTAATTCTGATT
*
82845401 CTGATTCTGATTCT
1 CTGATTCTAATTCT
82845415 CATTTTGATT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.48
Consensus pattern (37 bp):
CTGATTCTAATTCTAATTCTGTCACCTAATTCTGATT
Found at i:82845375 original size:18 final size:18
Alignment explanation
Indices: 82845327--82845435 Score: 78
Period size: 18 Copynumber: 5.9 Consensus size: 18
82845317 TTACCTAATA
*
82845327 CTGATTCTAATTCTAATT
1 CTGATTCTAATTCTGATT
*
82845345 CTG-TCACCTAATTCTGATT
1 CTGAT--TCTAATTCTGATT
* *
82845364 TTGATTCTAATTCTAATT
1 CTGATTCTAATTCTGATT
* *
82845382 CTG-TCACCTGATTCTGATT
1 CTGAT--TCTAATTCTGATT
* *
82845401 CTGATTCTGATTCTCATT
1 CTGATTCTAATTCTGATT
* *
82845419 TTGATTCTAGTTCTGAT
1 CTGATTCTAATTCTGAT
82845436 AATGTTTCTT
Statistics
Matches: 70, Mismatches: 15, Indels: 12
0.72 0.15 0.12
Matches are distributed among these distances:
17 2 0.03
18 40 0.57
19 26 0.37
20 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.11, T:0.49
Consensus pattern (18 bp):
CTGATTCTAATTCTGATT
Found at i:82845398 original size:6 final size:6
Alignment explanation
Indices: 82845355--82845435 Score: 67
Period size: 6 Copynumber: 13.3 Consensus size: 6
82845345 CTGTCACCTA
* * * *
82845355 ATTCTG ATTTTG ATTCTA ATTCTA ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
82845404 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
82845436 AATGTTTCTT
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
5 2 0.03
6 53 0.88
7 4 0.07
8 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:82846600 original size:20 final size:21
Alignment explanation
Indices: 82846575--82846616 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
82846565 TTCTGAACTG
*
82846575 TATGATGAT-AGCATATGAAA
1 TATGATAATGAGCATATGAAA
82846595 TATGATAATGAGCATATGAAA
1 TATGATAATGAGCATATGAAA
82846616 T
1 T
82846617 GTATAATCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.45, C:0.05, G:0.19, T:0.31
Consensus pattern (21 bp):
TATGATAATGAGCATATGAAA
Found at i:82856022 original size:27 final size:28
Alignment explanation
Indices: 82855990--82856095 Score: 92
Period size: 27 Copynumber: 3.9 Consensus size: 28
82855980 ACCCCAAATT
* *
82855990 GATAAAGTGACTATTTTGCCCTGATGT-C
1 GATAAAATGACTATTTTGCCCT-ATATAC
* * *
82856018 G-TAAAATGACTGTTTTACCCTATATAT
1 GATAAAATGACTATTTTGCCCTATATAC
*
82856045 GATAAAATGACTATTTTGCCCT-TATAT
1 GATAAAATGACTATTTTGCCCTATATAC
* * * *
82856072 GGTAAGATGACTGTTTTTCCCTAT
1 GATAAAATGACTATTTTGCCCTAT
82856096 GTGATGTATA
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
26 3 0.05
27 41 0.64
28 20 0.31
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (28 bp):
GATAAAATGACTATTTTGCCCTATATAC
Found at i:82856055 original size:28 final size:28
Alignment explanation
Indices: 82856019--82856095 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
82856009 CCTGATGTCG
82856019 TAAAATGACTGTTTTACCCTATATATGA
1 TAAAATGACTGTTTTACCCTATATATGA
* * *
82856047 TAAAATGACTATTTTGCCCT-TATATGG
1 TAAAATGACTGTTTTACCCTATATATGA
* *
82856074 TAAGATGACTGTTTTTCCCTAT
1 TAAAATGACTGTTTTACCCTAT
82856096 GTGATGTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.42
Consensus pattern (28 bp):
TAAAATGACTGTTTTACCCTATATATGA
Found at i:82856082 original size:55 final size:55
Alignment explanation
Indices: 82855989--82856095 Score: 160
Period size: 55 Copynumber: 1.9 Consensus size: 55
82855979 GACCCCAAAT
* *
82855989 TGATAAAGTGACTATTTTGCCCTGATGTCGTAAAATGACTGTTTTACCCTATATA
1 TGATAAAATGACTATTTTGCCCTGATATCGTAAAATGACTGTTTTACCCTATATA
* * * *
82856044 TGATAAAATGACTATTTTGCCCTTATATGGTAAGATGACTGTTTTTCCCTAT
1 TGATAAAATGACTATTTTGCCCTGATATCGTAAAATGACTGTTTTACCCTAT
82856096 GTGATGTATA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (55 bp):
TGATAAAATGACTATTTTGCCCTGATATCGTAAAATGACTGTTTTACCCTATATA
Found at i:82868710 original size:75 final size:74
Alignment explanation
Indices: 82868564--82868710 Score: 170
Period size: 75 Copynumber: 2.0 Consensus size: 74
82868554 AGAGAAATTA
* * * * *
82868564 ATATTCTTTTGAAAGAATATAATTTATTTTTCTAACATTCAATTTGGCTTCTCTACTAGTAAGGG
1 ATATTATTTTGAAAGAATATAATTCATTTTTCTAACATTCAATTTGCCTTCTCTACTAATAAGGA
82868629 GATAATCCT
66 GATAATCCT
* ** * * *
82868638 ATATTATTTTGAAAAGAATATAATTCCTTTTTCTAATTTTCCATTTGCCTTCTTTATTAATAAAG
1 ATATTATTTTG-AAAGAATATAATTCATTTTTCTAACATTCAATTTGCCTTCTCTACTAAT-AAG
82868703 GAG-TAATC
64 GAGATAATC
82868711 TTGTTTTCTT
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
74 10 0.17
75 45 0.75
76 5 0.08
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (74 bp):
ATATTATTTTGAAAGAATATAATTCATTTTTCTAACATTCAATTTGCCTTCTCTACTAATAAGGA
GATAATCCT
Found at i:82872941 original size:45 final size:45
Alignment explanation
Indices: 82872877--82873008 Score: 221
Period size: 45 Copynumber: 2.9 Consensus size: 45
82872867 AGGCACGATA
*
82872877 TCACCGGTATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
*
82872922 TCACCGGCATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
82872967 TCACCTGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
82873009 GTCGTATGAT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
44 3 0.04
45 79 0.96
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:82880576 original size:45 final size:45
Alignment explanation
Indices: 82880519--82880645 Score: 200
Period size: 45 Copynumber: 2.8 Consensus size: 45
82880509 TGATATCACT
* * *
82880519 GGCATTATAGCCTGCTAGGCTCAAAAGCTCGAATAGTATCTCACC
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCCCACC
* *
82880564 GGTATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCCCACC
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCCCACC
*
82880609 GGCATTATAACCTGCTAGGCTCAAAGGCCCGAATAGT
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT
82880646 GTCGTATGAT
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 74 1.00
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (45 bp):
GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCCCACC
Found at i:82881960 original size:45 final size:46
Alignment explanation
Indices: 82881897--82881994 Score: 173
Period size: 45 Copynumber: 2.2 Consensus size: 46
82881887 TGTATATTAC
*
82881897 CAAT-CAATTTCATCACATATCTATAATTTCACTTAATCAAAATCT
1 CAATACAATTTCATCACATATCTATAATTTCACTTAAGCAAAATCT
82881942 CAATACAA-TTCATCACATATCTATAATTTCACTTAAGCAAAATCT
1 CAATACAATTTCATCACATATCTATAATTTCACTTAAGCAAAATCT
82881987 CAATACAA
1 CAATACAA
82881995 GACATCGTGC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
45 48 0.94
46 3 0.06
ACGTcount: A:0.43, C:0.22, G:0.01, T:0.34
Consensus pattern (46 bp):
CAATACAATTTCATCACATATCTATAATTTCACTTAAGCAAAATCT
Found at i:82886715 original size:46 final size:46
Alignment explanation
Indices: 82886663--82886886 Score: 249
Period size: 46 Copynumber: 4.8 Consensus size: 46
82886653 GATATTTGGG
* * *
82886663 CATCCGAACTCGTTGAGTTGAGTTCAAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
82886709 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* * * * *
82886755 CGTCCGAACTCGTTGAGTTAAGTCCGAG-T---TTGTGAAATGTAACTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--A
**
82886800 GGCATCCGAACTCGTTGAGTTGAGTCTAAGTTCACTTATGGATGCAAA
1 --CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
** * *
82886848 CGCCCGATCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82886887 GTGGGTTACA
Statistics
Matches: 148, Mismatches: 21, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
42 4 0.03
43 5 0.03
45 2 0.01
46 102 0.69
47 24 0.16
48 2 0.01
50 5 0.03
51 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
Found at i:82886818 original size:93 final size:93
Alignment explanation
Indices: 82886709--82886877 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 93
82886699 TGGATGCGAA
* *
82886709 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
82886774 AAGTCCGAGTTTGTGAAATGTAACTAGG
66 AAGTCCGAGTTTGTGAAATGTAACTAGG
* *
82886802 CATCCGAACTCGTTGAGTTGAGTCTAAGTTCACTTATGGATGCAAACGCCCGATCTCGTTGAGTT
1 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
*
82886867 GAGTCCGAGTT
66 AAGTCCGAGTT
82886878 CGCTTATGGG
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
AAGTCCGAGTTTGTGAAATGTAACTAGG
Found at i:82891242 original size:20 final size:20
Alignment explanation
Indices: 82891170--82891242 Score: 56
Period size: 20 Copynumber: 3.3 Consensus size: 20
82891160 ATAAGTGAAC
82891170 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
* **
82891190 TCGGATGCTCAACCATCCTACTCGAAC
1 TCGGA--CTCAA-C-T-C-A-ACGAGT
82891217 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
82891237 TCGGAC
1 TCGGAC
82891243 ATTCGCATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
20 14 0.35
21 1 0.03
22 6 0.15
23 2 0.05
24 2 0.05
25 6 0.15
26 1 0.03
27 8 0.20
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (20 bp):
TCGGACTCAACTCAACGAGT
Found at i:82891280 original size:46 final size:46
Alignment explanation
Indices: 82891158--82891379 Score: 331
Period size: 46 Copynumber: 4.8 Consensus size: 46
82891148 TGTAACCCGC
* * * *
82891158 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
82891202 CCATCCTACTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCAT--AAGT-GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
*
82891251 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
82891297 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
82891343 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
82891380 TGCCCAAATA
Statistics
Matches: 163, Mismatches: 10, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
44 4 0.02
46 120 0.74
47 30 0.18
49 9 0.06
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82898245 original size:30 final size:30
Alignment explanation
Indices: 82898164--82898237 Score: 112
Period size: 30 Copynumber: 2.5 Consensus size: 30
82898154 ATGGTCGTCA
* **
82898164 CCATCGCTTTTCATAAAGGGATAGCCAAAG
1 CCATCCCTTTTCATAAATTGATAGCCAAAG
*
82898194 CTATCCCTTTTCATAAATTGATAGCCAAAG
1 CCATCCCTTTTCATAAATTGATAGCCAAAG
82898224 CCATCCCTTTTCAT
1 CCATCCCTTTTCAT
82898238 TTTTTGATGG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (30 bp):
CCATCCCTTTTCATAAATTGATAGCCAAAG
Found at i:82902182 original size:15 final size:17
Alignment explanation
Indices: 82902162--82902193 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
82902152 TGTATATATA
82902162 TATGTG-TGTA-TGGTT
1 TATGTGATGTATTGGTT
82902177 TATGTGATGTATTGGTT
1 TATGTGATGTATTGGTT
82902194 AATAGATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 4 0.27
17 5 0.33
ACGTcount: A:0.16, C:0.00, G:0.31, T:0.53
Consensus pattern (17 bp):
TATGTGATGTATTGGTT
Found at i:82903791 original size:40 final size:40
Alignment explanation
Indices: 82903729--82903823 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 40
82903719 ACCATGTTCG
82903729 GCACTAAGTGTGCG-ATTCAAAATAGCTTCGGCTATAAATA
1 GCACTAAGTGTGCGAATTCAAAATAGCTTCGGCTATAAA-A
* *
82903769 GCACTAAGTGTGCGAATT-AAAATAGCTTTGGCTATATAA
1 GCACTAAGTGTGCGAATTCAAAATAGCTTCGGCTATAAAA
82903808 GCCACTAAGTGTGCGA
1 G-CACTAAGTGTGCGA
82903824 TACCGAGATA
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
39 2 0.04
40 46 0.90
41 3 0.06
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (40 bp):
GCACTAAGTGTGCGAATTCAAAATAGCTTCGGCTATAAAA
Found at i:82903910 original size:17 final size:17
Alignment explanation
Indices: 82903888--82903921 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
82903878 GCTTCGGCTA
82903888 ATCATTAATGCACTAAG
1 ATCATTAATGCACTAAG
82903905 ATCATTAATGCACTAAG
1 ATCATTAATGCACTAAG
82903922 TTTGTGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (17 bp):
ATCATTAATGCACTAAG
Found at i:82904038 original size:20 final size:20
Alignment explanation
Indices: 82904015--82904077 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
82904005 GGAAATATCA
82904015 GGTATGTACGATACCTATGT
1 GGTATGTACGATACCTATGT
* *
82904035 GGTA-G-ATGATA-CTATATT
1 GGTATGTACGATACCTAT-GT
82904053 AGGTATGTACGATACCTATGT
1 -GGTATGTACGATACCTATGT
82904074 GGTA
1 GGTA
82904078 AATGATACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
17 4 0.12
18 6 0.18
19 5 0.15
20 9 0.26
21 6 0.18
22 4 0.12
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.35
Consensus pattern (20 bp):
GGTATGTACGATACCTATGT
Found at i:82904068 original size:39 final size:39
Alignment explanation
Indices: 82904009--82904088 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
82903999 AATACGGGAA
*
82904009 ATATCAGGTATGTACGATACCTATGTGGTAGATGATACT
1 ATATCAGGTATGTACGATACCTATGTGGTAAATGATACT
*
82904048 ATATTAGGTATGTACGATACCTATGTGGTAAATGATACT
1 ATATCAGGTATGTACGATACCTATGTGGTAAATGATACT
82904087 AT
1 AT
82904089 GTGTATGAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.35
Consensus pattern (39 bp):
ATATCAGGTATGTACGATACCTATGTGGTAAATGATACT
Found at i:82907143 original size:46 final size:46
Alignment explanation
Indices: 82907090--82907180 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
82907080 TTGATGTTAT
82907090 TACCTTTTGATGAGTTCGATATAATTTTGGGTATGGATTGGTTAAA
1 TACCTTTTGATGAGTTCGATATAATTTTGGGTATGGATTGGTTAAA
*
82907136 TACCTTTTGATGAGTTTGATATAATTTTGGGTATGGATTGGTTAA
1 TACCTTTTGATGAGTTCGATATAATTTTGGGTATGGATTGGTTAA
82907181 CTTTGCATGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.25, C:0.05, G:0.24, T:0.45
Consensus pattern (46 bp):
TACCTTTTGATGAGTTCGATATAATTTTGGGTATGGATTGGTTAAA
Done.