Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 240 of 290
Found at i:82907638 original size:24 final size:24
Alignment explanation
Indices: 82907611--82907702 Score: 139
Period size: 24 Copynumber: 3.8 Consensus size: 24
82907601 GTCAGAAGAA
82907611 GATTTAGGAGCTGATAAGGGAGAG
1 GATTTAGGAGCTGATAAGGGAGAG
*
82907635 GATTTACGAGCTGATAAGGGAGAG
1 GATTTAGGAGCTGATAAGGGAGAG
* *
82907659 GATTTAGGAGCTGATAAAGGAGAA
1 GATTTAGGAGCTGATAAGGGAGAG
*
82907683 GATTTAGGAGTTGATCAAGG
1 GATTTAGGAGCTGAT-AAGG
82907703 AGCAAGAGTT
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
24 58 0.95
25 3 0.05
ACGTcount: A:0.35, C:0.05, G:0.37, T:0.23
Consensus pattern (24 bp):
GATTTAGGAGCTGATAAGGGAGAG
Found at i:82915558 original size:24 final size:24
Alignment explanation
Indices: 82915531--82915604 Score: 112
Period size: 24 Copynumber: 3.0 Consensus size: 24
82915521 AAGGCTGTCA
82915531 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
82915555 GGAGAGGATTTAGGAGTTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
82915579 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
82915604 G
1 G
82915605 AGCAGGACTT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 40 0.93
25 3 0.07
ACGTcount: A:0.36, C:0.04, G:0.38, T:0.22
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:82917324 original size:46 final size:46
Alignment explanation
Indices: 82917201--82917329 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
82917191 TGTAACCCGC
** ***
82917201 CCATAAGTGAACTCGGACTCAACTCAACGAGCCCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
82917247 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
82917293 CTATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82917330 TGCCCAAATA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82919978 original size:27 final size:26
Alignment explanation
Indices: 82919947--82920124 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
82919937 TAAATTGTAC
82919947 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
82919974 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
82920000 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
82920028 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
82920056 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
82920083 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
82920110 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
82920125 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:82920063 original size:82 final size:81
Alignment explanation
Indices: 82919948--82920103 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
82919938 AAATTGTACA
* *
82919948 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
82920012 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
82920029 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
82920094 TGCGAGTTGA
65 TGCGAATTGA
82920104 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82920115 original size:82 final size:81
Alignment explanation
Indices: 82919944--82920124 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
82919934 GATTAAATTG
* *
82919944 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
82920009 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
82920025 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
82920089 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
82920107 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
82920125 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:82920135 original size:27 final size:27
Alignment explanation
Indices: 82920029--82920135 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
82920019 TGACCATGCG
* * * *
82920029 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
82920057 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
82920084 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
82920111 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
82920136 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:82925020 original size:40 final size:40
Alignment explanation
Indices: 82924922--82925304 Score: 565
Period size: 40 Copynumber: 9.6 Consensus size: 40
82924912 TCCTCGTTCA
* * * * *
82924922 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
82924961 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82925001 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82925041 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82925081 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82925121 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82925161 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
82925201 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
82925241 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
82925281 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
82925305 CAGCATTCAA
Statistics
Matches: 320, Mismatches: 20, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
39 37 0.12
40 275 0.86
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:82933070 original size:40 final size:40
Alignment explanation
Indices: 82932972--82933514 Score: 885
Period size: 40 Copynumber: 13.6 Consensus size: 40
82932962 TCCTCGTTCA
* * * * *
82932972 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
82933011 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82933051 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82933091 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82933131 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82933171 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82933211 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82933251 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82933291 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82933331 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
82933371 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
82933411 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
82933451 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
82933491 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
82933515 CAGCATTCAA
Statistics
Matches: 480, Mismatches: 20, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
39 37 0.08
40 435 0.91
41 8 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:82936256 original size:13 final size:13
Alignment explanation
Indices: 82936238--82936266 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
82936228 GGTTGTTTAT
82936238 TAAACTAATTAAC
1 TAAACTAATTAAC
82936251 TAAACTAATTAAC
1 TAAACTAATTAAC
82936264 TAA
1 TAA
82936267 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:82941696 original size:28 final size:28
Alignment explanation
Indices: 82941656--82941734 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
82941646 GCAATCAAAT
* *
82941656 ATGGCACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
82941684 ATGGCACTTAGTGTGTGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
82941712 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
82941735 CGAATGATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:82941989 original size:80 final size:81
Alignment explanation
Indices: 82941844--82941992 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 81
82941834 GATATTCGGG
* *
82941844 CTTTGAGCCTAGCAAGCCTTGTCCTGGTGAAGTAAATCGGGCTTATGCCTAGCAGGCTTATTGCC
1 CTTTGAGCCTAGCAAGCCTTGTCCTGGTGAAGTAAATCAGGCTTAGGCCTAGCAGGCTTATTGCC
82941909 GGTGTATAAAATCAGA
66 GGTGTATAAAATCAGA
* * *
82941925 CTTTGAGTCTAGCAAGCCTTGTGCC-GGTG-TG-AGATACAGGCTTAGGCCTAGCAGGCTT-TAT
1 CTTTGAGCCTAGCAAGCCTTGT-CCTGGTGAAGTAAAT-CAGGCTTAGGCCTAGCAGGCTTAT-T
82941986 GCCGGTG
63 GCCGGTG
82941993 AATTATTAGA
Statistics
Matches: 60, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
79 4 0.07
80 29 0.48
81 25 0.42
82 2 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (81 bp):
CTTTGAGCCTAGCAAGCCTTGTCCTGGTGAAGTAAATCAGGCTTAGGCCTAGCAGGCTTATTGCC
GGTGTATAAAATCAGA
Found at i:82950245 original size:84 final size:83
Alignment explanation
Indices: 82950092--82950259 Score: 200
Period size: 84 Copynumber: 2.0 Consensus size: 83
82950082 TTCTGATATG
* *
82950092 TGATTTCCTGTAAGACCACATCTGGGACGTTGGCATTAATTTGATATTACATGTAAGACCAAGTT
1 TGATTTCCTGTAAGACCACATCTGGGACGTTGGCATGAATTTGA-ATTACATGTAAGACCAAGTC
*
82950157 TGGGATATCGGCATTGTAT
65 TGGGACATCGGCATTGTAT
*
82950176 TGATTTCGC-GTAAGACC-CTATCTGGGACAG-TGGCATCGATATTTG-ATTACATGTAAGCCCA
1 TGATTTC-CTGTAAGACCAC-ATCTGGGAC-GTTGGCAT-GA-ATTTGAATTACATGTAAGACCA
* *
82950237 TGTCTGGGACGTCGGCATTGTAT
61 AGTCTGGGACATCGGCATTGTAT
82950260 GAGCTTTCCG
Statistics
Matches: 73, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
83 1 0.01
84 64 0.88
85 3 0.04
86 5 0.07
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (83 bp):
TGATTTCCTGTAAGACCACATCTGGGACGTTGGCATGAATTTGAATTACATGTAAGACCAAGTCT
GGGACATCGGCATTGTAT
Found at i:82956987 original size:13 final size:14
Alignment explanation
Indices: 82956966--82956998 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
82956956 TTTATTAATG
82956966 AAATATATTAAA-AT
1 AAAT-TATTAAATAT
82956980 AAATTATTAAATAT
1 AAATTATTAAATAT
82956994 AAATT
1 AAATT
82956999 TATATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAATTATTAAATAT
Found at i:82961780 original size:8 final size:8
Alignment explanation
Indices: 82961769--82961817 Score: 62
Period size: 8 Copynumber: 5.8 Consensus size: 8
82961759 AAAAATCAAA
*
82961769 AAAAAAAG
1 AAAAAAAT
82961777 AAAAAAAT
1 AAAAAAAT
82961785 AAAAAAAT
1 AAAAAAAT
82961793 AAAAAAAAT
1 -AAAAAAAT
82961802 AAGAATAAAT
1 AA-AA-AAAT
82961812 AAAAAA
1 AAAAAA
82961818 TAGGAGGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
8 19 0.51
9 12 0.32
10 6 0.16
ACGTcount: A:0.86, C:0.00, G:0.04, T:0.10
Consensus pattern (8 bp):
AAAAAAAT
Found at i:82961780 original size:9 final size:9
Alignment explanation
Indices: 82961759--82961817 Score: 66
Period size: 10 Copynumber: 6.3 Consensus size: 9
82961749 ATCACGTAGC
82961759 AAAAATCAAA
1 AAAAAT-AAA
*
82961769 AAAAAAAGAA
1 AAAAATA-AA
82961779 AAAAAT-AA
1 AAAAATAAA
82961787 AAAAATAAA
1 AAAAATAAA
82961796 AAAAATAAGA
1 AAAAATAA-A
*
82961806 ATAAATAAA
1 AAAAATAAA
82961815 AAA
1 AAA
82961818 TAGGAGGATT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
8 8 0.19
9 14 0.33
10 20 0.48
ACGTcount: A:0.85, C:0.02, G:0.03, T:0.10
Consensus pattern (9 bp):
AAAAATAAA
Found at i:82961791 original size:28 final size:27
Alignment explanation
Indices: 82961759--82961817 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 27
82961749 ATCACGTAGC
82961759 AAAAATCAAAAAAAA-AAGAAAAAAATAA
1 AAAAAT-AAAAAAAATAAG-AAAAAATAA
*
82961787 AAAAATAAAAAAAATAAGAATAAATAA
1 AAAAATAAAAAAAATAAGAAAAAATAA
82961814 AAAA
1 AAAA
82961818 TAGGAGGATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 20 0.69
28 9 0.31
ACGTcount: A:0.85, C:0.02, G:0.03, T:0.10
Consensus pattern (27 bp):
AAAAATAAAAAAAATAAGAAAAAATAA
Found at i:82961811 original size:19 final size:17
Alignment explanation
Indices: 82961767--82961817 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 17
82961757 GCAAAAATCA
*
82961767 AAAAAAAAAGAAAAAAAT
1 AAAAAAATA-AAAAAAAT
82961785 AAAAAAATAAAAAAAAT
1 AAAAAAATAAAAAAAAT
82961802 AAGAATAAATAAAAAA
1 AA-AA-AAATAAAAAA
82961818 TAGGAGGATT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 10 0.33
18 10 0.33
19 10 0.33
ACGTcount: A:0.86, C:0.00, G:0.04, T:0.10
Consensus pattern (17 bp):
AAAAAAATAAAAAAAAT
Found at i:82963918 original size:40 final size:40
Alignment explanation
Indices: 82963818--82963989 Score: 238
Period size: 40 Copynumber: 4.3 Consensus size: 40
82963808 GCTCCTCGTT
* * * *
82963818 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
*
82963858 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
* *
82963897 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
* * *
82963937 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
*
82963977 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
82963990 ATCTGAGTCC
Statistics
Matches: 120, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 34 0.28
40 86 0.72
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
Found at i:82963975 original size:80 final size:80
Alignment explanation
Indices: 82963818--82964042 Score: 249
Period size: 80 Copynumber: 2.8 Consensus size: 80
82963808 GCTCCTCGTT
* * * * *
82963818 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCACAAATGCCTTCGGGACTTAACCCGG
82963882 ATTTAACAACTCGCA
66 ATTTAACAACTCGCA
* *
82963897 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCACAAATGCCTTCGGGACTTAACCCGG
** *
82963962 ATTTAGTATCTCGCA
66 ATTTAACAACTCGCA
* * * * * * * *
82963977 CAAAGGCCTTC-GGATCTGAGTCCGGATATATTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAATAAC-TCGCACAAATGCCTTCGGGACTTAACCC
82964040 GGA
64 GGA
82964043 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.31
80 77 0.63
81 8 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAACAACTCGCA
Found at i:82964002 original size:40 final size:40
Alignment explanation
Indices: 82963818--82964042 Score: 181
Period size: 40 Copynumber: 5.7 Consensus size: 40
82963808 GCTCCTCGTT
* * * * *
82963818 CAAATGCCTTCGGGACAT-AGCCCGGTTTTAGTAACTCACA
1 CAAAGGCCTTCGGGAC-TGAACCCGGATTTAATAACTCGCA
* *
82963858 C-AATGCCTTCGGGACAT-AACCCGGATTTAACAACTCGCA
1 CAAAGGCCTTCGGGAC-TGAACCCGGATTTAATAACTCGCA
* * *
82963897 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAAGGCCTTCGGGACTGAACCCGGATTTAATAACTCGCA
* * * *
82963937 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAAGGCCTTCGGGACTGAACCCGGATTTAATAACTCGCA
** * * * *
82963977 CAAAGGCCTTC-GGATCTGAGTCCGGATATATTCACTTAGCA
1 CAAAGGCCTTCGGGA-CTGAACCCGGATTTAATAAC-TCGCA
* *
82964018 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAAGGCCTTCGGGACTGAACCCGGA
82964043 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 38 0.24
40 111 0.69
41 11 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAAGGCCTTCGGGACTGAACCCGGATTTAATAACTCGCA
Found at i:82972109 original size:40 final size:40
Alignment explanation
Indices: 82971844--82972109 Score: 333
Period size: 40 Copynumber: 6.7 Consensus size: 40
82971834 GCTACTCGTT
*
82971844 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
82971884 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
82971924 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTGGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
82971964 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
** *
82972004 CAAATGCCTTC-GGATCTTAGTTCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
82972044 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
82972085 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82972110 CATCATTCAA
Statistics
Matches: 203, Mismatches: 19, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
39 3 0.01
40 188 0.93
41 12 0.06
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:82974515 original size:26 final size:27
Alignment explanation
Indices: 82974459--82974535 Score: 86
Period size: 26 Copynumber: 2.9 Consensus size: 27
82974449 ACACCAATAA
* * * *
82974459 CGCAGCAAAGCTGCTAGTAATAAT-CT
1 CGCAGCAAAGCTGCCAGTAACAGTAAT
82974485 CGCAGCAAAGCTGCCAGTAACAGTAAT
1 CGCAGCAAAGCTGCCAGTAACAGTAAT
* *
82974512 -GCAGCAAAGTTGCCAGTATCAGTA
1 CGCAGCAAAGCTGCCAGTAACAGTA
82974536 TATGTGGCAA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
26 43 0.98
27 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.19
Consensus pattern (27 bp):
CGCAGCAAAGCTGCCAGTAACAGTAAT
Found at i:82974704 original size:26 final size:28
Alignment explanation
Indices: 82974667--82974720 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
82974657 ATCATAGCAC
82974667 AAATCAGTCA-TTTACCCTCG-AGGGGTA
1 AAATCAGTCATTTTACCCT-GTAGGGGTA
82974694 AAAT-AGTCATTTTACCCTGTAGGGGTA
1 AAATCAGTCATTTTACCCTGTAGGGGTA
82974721 TTTTGGTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTGTAGGGGTA
Found at i:82981575 original size:47 final size:47
Alignment explanation
Indices: 82981506--82981819 Score: 520
Period size: 47 Copynumber: 6.7 Consensus size: 47
82981496 ATTGCTCAGT
82981506 CTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGG
1 CTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGG
82981553 CTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGG
1 CTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGG
82981600 CTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGG
1 CTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGG
82981647 CTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGG
1 CTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGG
**
82981694 CTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGGATAAGG
1 CTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGT-GATAAGG
** * *
82981742 CTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGG
1 CTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGG
** * * *
82981789 CCGAGTGGCCAATGTGATGGATGTGAAAGTG
1 CTTAATGGCCGATGTGATGAATGTGAAAGTG
82981820 CATAAATGTG
Statistics
Matches: 257, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 210 0.82
48 47 0.18
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (47 bp):
CTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGG
Found at i:82982008 original size:37 final size:37
Alignment explanation
Indices: 82981952--82982030 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
82981942 TCGAGCTCTA
* * *
82981952 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
82981989 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
82982026 AAGAC
1 AAGAC
82982031 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:82986346 original size:26 final size:27
Alignment explanation
Indices: 82986270--82986346 Score: 95
Period size: 26 Copynumber: 2.9 Consensus size: 27
82986260 ACACCAATAA
*
82986270 CGCAGCAAAGCTGCCAGTAATAAT-AT
1 CGCAGCAAAGCTGCCAGTAATAGTAAT
* * *
82986296 CGCGGCAAAGCTGCTAGTAACAGTAAT
1 CGCAGCAAAGCTGCCAGTAATAGTAAT
*
82986323 -GCAGCAAAGCTGCCAGTATTAGTA
1 CGCAGCAAAGCTGCCAGTAATAGTA
82986347 CATGTGGTAG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 40 0.95
27 2 0.05
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.19
Consensus pattern (27 bp):
CGCAGCAAAGCTGCCAGTAATAGTAAT
Found at i:82986517 original size:26 final size:28
Alignment explanation
Indices: 82986479--82986532 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
82986469 ATCATAGCAC
82986479 AAATCAGTCA-TTTACCCTCG-AGGGGTA
1 AAATCAGTCATTTTACCCT-GTAGGGGTA
*
82986506 AAAT-AGTTATTTTACCCTGTAGGGGTA
1 AAATCAGTCATTTTACCCTGTAGGGGTA
82986533 TTTTGGTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTGTAGGGGTA
Found at i:82991687 original size:40 final size:40
Alignment explanation
Indices: 82991624--82991699 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
82991614 ACTATGTTTG
*
82991624 GCACTAAGTGTGCGTTTAAAAATAGCTTCGGCTATAAATA
1 GCACTAAGTGTGCGATTAAAAATAGCTTCGGCTATAAATA
* *
82991664 GCACTAAGTGTGCGAATT-GAAATAGCTTTGGCTATA
1 GCACTAAGTGTGCG-ATTAAAAATAGCTTCGGCTATA
82991700 TGAGGCACTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 30 0.94
41 2 0.06
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.30
Consensus pattern (40 bp):
GCACTAAGTGTGCGATTAAAAATAGCTTCGGCTATAAATA
Found at i:82991708 original size:40 final size:40
Alignment explanation
Indices: 82991623--82991711 Score: 103
Period size: 40 Copynumber: 2.2 Consensus size: 40
82991613 GACTATGTTT
*
82991623 GGCACTAAGTGTGCGTTTAAAAATAGCTTCGGCTATAAATA
1 GGCACTAAGTGTGCGATTAAAAATAGCTTCGGCTAT-AATA
* *
82991664 -GCACTAAGTGTGCGAATT-GAAATAGCTTTGGCTAT-ATGA
1 GGCACTAAGTGTGCG-ATTAAAAATAGCTTCGGCTATAAT-A
82991703 GGCACTAAG
1 GGCACTAAG
82991712 CGTGTGATAC
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
38 2 0.05
39 1 0.02
40 37 0.88
41 2 0.05
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.28
Consensus pattern (40 bp):
GGCACTAAGTGTGCGATTAAAAATAGCTTCGGCTATAATA
Found at i:82993347 original size:18 final size:18
Alignment explanation
Indices: 82993324--82993413 Score: 94
Period size: 18 Copynumber: 5.1 Consensus size: 18
82993314 CTTGTCCCAT
82993324 TGCAGTAATAGTAAACAG
1 TGCAGTAATAGTAAACAG
* *
82993342 TGCAGTAACAATAATA-A-
1 TGCAGTAATAGTAA-ACAG
*
82993359 TGCAGTAATAGTAAACAT
1 TGCAGTAATAGTAAACAG
* *
82993377 TACAGTAATAATAAACAG
1 TGCAGTAATAGTAAACAG
* *
82993395 TGCAGTAACAGTGAACAG
1 TGCAGTAATAGTAAACAG
82993413 T
1 T
82993414 ATGCAATTCC
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
16 1 0.02
17 13 0.22
18 43 0.74
19 1 0.02
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.23
Consensus pattern (18 bp):
TGCAGTAATAGTAAACAG
Found at i:82993370 original size:35 final size:36
Alignment explanation
Indices: 82993324--82993414 Score: 114
Period size: 35 Copynumber: 2.6 Consensus size: 36
82993314 CTTGTCCCAT
*
82993324 TGCAGTAATAGTAAACAGTGCAGTAACAATAATA-A-
1 TGCAGTAATAGTAAACAGTACAGTAACAATAA-ACAG
* *
82993359 TGCAGTAATAGTAAACATTACAGTAATAATAAACAG
1 TGCAGTAATAGTAAACAGTACAGTAACAATAAACAG
* *
82993395 TGCAGTAACAGTGAACAGTA
1 TGCAGTAATAGTAAACAGTA
82993415 TGCAATTCCT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
34 1 0.02
35 30 0.62
36 17 0.35
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.23
Consensus pattern (36 bp):
TGCAGTAATAGTAAACAGTACAGTAACAATAAACAG
Found at i:82993776 original size:27 final size:27
Alignment explanation
Indices: 82993723--82994054 Score: 330
Period size: 27 Copynumber: 12.4 Consensus size: 27
82993713 AAACATACAT
* * *
82993723 CACATAGGGGTAAAACAGTCATCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
82993750 CAGAAAAAGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
82993777 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
**
82993804 CTTATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* **
82993831 CCCATAAGGGCAAAACAACCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
** * *
82993858 CTTATAAGGGC-AAACAATCATTTCAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
82993884 CCCATAAAGGCAAAACAATCTTTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
82993911 CTCATAAGGGC-AAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
82993937 CTCATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
82993964 CCCATAAGGGCAAAACAGTCATTTTA-
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
82993990 CATCATAAGGGAAAAACAATCATTTTAC
1 CA-CATAAGGGCAAAACAGTCATTTTAC
* * * *
82994018 CCCATTAGTGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
82994045 CA-ATTAAGGG
1 CACA-TAAGGG
82994055 TCTAGGTACA
Statistics
Matches: 255, Mismatches: 45, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
26 48 0.19
27 206 0.81
28 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:82997324 original size:40 final size:39
Alignment explanation
Indices: 82997247--82997462 Score: 276
Period size: 40 Copynumber: 5.4 Consensus size: 39
82997237 AAACCAAGTA
* * *
82997247 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATG
* *
82997286 CCTTTGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTCGCACAAATG
82997326 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
82997366 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATG
* *
82997406 CCTTCGGGACTTAGCCCGTA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATG
*
82997446 CCTTCAGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
82997463 CGTTATCATC
Statistics
Matches: 162, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 14 0.09
40 147 0.91
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATG
Found at i:83011177 original size:14 final size:14
Alignment explanation
Indices: 83011158--83011188 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
83011148 GTCTTCTGAA
83011158 GCTACAACTATTTG
1 GCTACAACTATTTG
83011172 GCTACAACTATTTG
1 GCTACAACTATTTG
83011186 GCT
1 GCT
83011189 TTATCTCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (14 bp):
GCTACAACTATTTG
Found at i:83021885 original size:46 final size:45
Alignment explanation
Indices: 83021813--83021988 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
83021803 TGTAACCCGC
* *
83021813 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCAT
* * * *
83021859 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGAATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG---GAC-A-TTGCAT
* *
83021909 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACA-TTGCAT
83021952 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83021989 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 2 0.02
46 61 0.56
47 26 0.24
48 2 0.02
49 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
Found at i:83021980 original size:93 final size:93
Alignment explanation
Indices: 83021821--83021991 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
83021811 GCCCATAAGT
* *
83021821 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATGAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
83021886 CGAGTTCGAATGCCTAGTTACATCTCAC
66 CGAGTTCGAATGCCTAGTTACATCTCAC
* * *
83021914 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
83021979 CGAGTTCGGATGC
66 CGAGTTCGAATGC
83021992 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:83033659 original size:16 final size:16
Alignment explanation
Indices: 83033638--83033670 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
83033628 AAAAATTCAA
83033638 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
83033654 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
83033670 G
1 G
83033671 GGTATTACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.27, T:0.48
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:83041448 original size:46 final size:46
Alignment explanation
Indices: 83041321--83041448 Score: 220
Period size: 46 Copynumber: 2.8 Consensus size: 46
83041311 ATTTGGGCAT
* * *
83041321 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
83041367 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
83041413 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83041449 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:83047736 original size:13 final size:14
Alignment explanation
Indices: 83047710--83047742 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
83047700 ATAAAATATA
83047710 AATTTATATTTAAT
1 AATTTATATTTAAT
83047724 AATTTAT-TTTAAT
1 AATTTATATTTAAT
83047737 ATATTT
1 A-ATTT
83047743 CATTAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
AATTTATATTTAAT
Found at i:83062113 original size:52 final size:46
Alignment explanation
Indices: 83061979--83062114 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 46
83061969 ATAATTTCGG
* * *
83061979 ATATATATTGGCACATAGTGTGCGAGACCGAGATAGCTTCAGCTAT
1 ATATATATTGGCACTTAGTGTGCGAGATCGAGATAGCTCCAGCTAT
* *
83062025 ATATATATTGGCACTTAGTGTGCGTGATTGAGATAGCTCCAGCTATATAAAT
1 ATATATATTGGCACTTAGTGTGCGAGATCGAGATAGCTCCAGC----T--AT
* *
83062077 ATATATATTGGCACTTAGTGTGCGAGATCAATATAGCT
1 ATATATATTGGCACTTAGTGTGCGAGATCGAGATAGCT
83062115 TCGGTTATTT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
46 38 0.51
50 1 0.01
52 36 0.48
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (46 bp):
ATATATATTGGCACTTAGTGTGCGAGATCGAGATAGCTCCAGCTAT
Found at i:83066699 original size:40 final size:40
Alignment explanation
Indices: 83066644--83066865 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
83066634 TATTCGAATG
*
83066644 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGAGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
83066684 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
83066724 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTTGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * * *
83066764 ATATCCAGGCCAAGTCCCGAAGGCGTTTGTGCTATTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
83066804 ATATCGGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
83066844 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
83066866 TACTTGGGTT
Statistics
Matches: 160, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 14 0.09
40 145 0.91
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:83089434 original size:24 final size:24
Alignment explanation
Indices: 83089407--83089482 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
83089397 TAAACAAAAT
83089407 TTGTTATCTGATTTCCAACATTGA
1 TTGTTATCTGATTTCCAACATTGA
* * ** *
83089431 TTGTCAGAT-TGACTTAAAACATT-C
1 TTGT--TATCTGATTTCCAACATTGA
83089455 TTGTTATCTGATTTCCAACATTGA
1 TTGTTATCTGATTTCCAACATTGA
83089479 TTGT
1 TTGT
83089483 CAGATTGACT
Statistics
Matches: 38, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
22 2 0.05
23 11 0.29
24 12 0.32
25 11 0.29
26 2 0.05
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (24 bp):
TTGTTATCTGATTTCCAACATTGA
Found at i:83089451 original size:25 final size:25
Alignment explanation
Indices: 83089423--83089501 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
83089413 TCTGATTTCC
83089423 AACATTGATTGTCAGATTGACTTAA
1 AACATTGATTGTCAGATTGACTTAA
* * * **
83089448 AACATT-CTTGT--TATCTGATTTCC
1 AACATTGATTGTCAGAT-TGACTTAA
83089471 AACATTGATTGTCAGATTGACTTAA
1 AACATTGATTGTCAGATTGACTTAA
83089496 AACATT
1 AACATT
83089502 CTTTTACTCG
Statistics
Matches: 40, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
22 2 0.05
23 11 0.28
24 8 0.20
25 17 0.43
26 2 0.05
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (25 bp):
AACATTGATTGTCAGATTGACTTAA
Found at i:83089470 original size:48 final size:48
Alignment explanation
Indices: 83089407--83089504 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
83089397 TAAACAAAAT
83089407 TTGTTATCTGATTTCCAACATTGATTGTCAGATTGACTTAAAACATTC
1 TTGTTATCTGATTTCCAACATTGATTGTCAGATTGACTTAAAACATTC
83089455 TTGTTATCTGATTTCCAACATTGATTGTCAGATTGACTTAAAACATTC
1 TTGTTATCTGATTTCCAACATTGATTGTCAGATTGACTTAAAACATTC
83089503 TT
1 TT
83089505 TTACTCGTCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (48 bp):
TTGTTATCTGATTTCCAACATTGATTGTCAGATTGACTTAAAACATTC
Found at i:83091807 original size:34 final size:34
Alignment explanation
Indices: 83091769--83091836 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
83091759 ATGAGATAGG
* *
83091769 TTGGTGTTGTATGTGTTTGGTTAGAGGCAAGCAT
1 TTGGTGTTGCATGTGTTCGGTTAGAGGCAAGCAT
83091803 TTGGTGTTGCATGTGTTCGGTTAGAGGCAAGCAT
1 TTGGTGTTGCATGTGTTCGGTTAGAGGCAAGCAT
83091837 ATTGATGCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.18, C:0.09, G:0.35, T:0.38
Consensus pattern (34 bp):
TTGGTGTTGCATGTGTTCGGTTAGAGGCAAGCAT
Found at i:83092510 original size:40 final size:39
Alignment explanation
Indices: 83092447--83092631 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 39
83092437 TCGGATGATA
* * *
83092447 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTAAT
* *
83092487 TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT
* *
83092527 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT
*
83092566 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-AT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT
83092605 AACCGGGCTAAGTCCCGAAGGCATTTG
1 -ACCGGGCTAAGTCCCGAAGGCATTTG
83092632 AGCTAGTGGC
Statistics
Matches: 131, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 38 0.29
40 90 0.69
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAT
Found at i:83092664 original size:79 final size:80
Alignment explanation
Indices: 83092444--83092654 Score: 279
Period size: 79 Copynumber: 2.7 Consensus size: 80
83092434 TGTTCGGATG
83092444 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGAGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-TCCGAGCTAAGTCCCGAAGG
*
83092507 CATTTGTGCGAGCTACT
64 CATTTGTGCAAGCTACT
* * * *** *
83092524 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGAGCTAAGTCCCGAAGGC
*
83092587 ATTTGTGCAAGTTACT
65 ATTTGTGCAAGCTACT
83092603 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-AGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGAGCTAA
83092655 ACTTCGAAGG
Statistics
Matches: 110, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
79 74 0.67
80 33 0.30
81 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGAGCTAAGTCCCGAAGGCA
TTTGTGCAAGCTACT
Found at i:83096593 original size:40 final size:40
Alignment explanation
Indices: 83096542--83096812 Score: 364
Period size: 40 Copynumber: 6.7 Consensus size: 40
83096532 ATTACCACAA
* * ** *
83096542 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
83096582 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
83096622 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATATCAACTC
* *
83096664 GCACAAATTCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
83096704 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
83096744 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * *
83096784 GCACAATTGCCTTCGAGACTTAGCCCGGA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGA
83096813 AAAATTCAAA
Statistics
Matches: 208, Mismatches: 20, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
40 168 0.81
41 4 0.02
42 36 0.17
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:83096759 original size:122 final size:120
Alignment explanation
Indices: 83096541--83096812 Score: 393
Period size: 122 Copynumber: 2.2 Consensus size: 120
83096531 TATTACCACA
* * * *
83096541 AGCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGC
* * *
83096606 CCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATATCAACT
66 CCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA-AAATC-ACT
* * * *
83096663 CGCACAAATT-CCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTGCGGGTCTTAG
1 AGCAC-AATTGCCTTCGGGTCTTAGCCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAG
83096727 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
65 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
* *
83096783 AGCACAATTGCCTTCGAGACTTAGCCCGGA
1 AGCACAATTGCCTTCGGGTCTTAGCCCGGA
83096813 AAAATTCAAA
Statistics
Matches: 133, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
119 4 0.03
120 24 0.18
121 4 0.03
122 97 0.73
123 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (120 bp):
AGCACAATTGCCTTCGGGTCTTAGCCCGGACATAGCAACTCGCACAAATGCCTGCGGGTCTTAGC
CCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
Found at i:83100426 original size:93 final size:93
Alignment explanation
Indices: 83100313--83100484 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
83100303 CGCCCATAAG
* * *
83100313 CGAACTCGGACTTAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83100378 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
83100406 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
83100471 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
83100485 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:83100481 original size:46 final size:46
Alignment explanation
Indices: 83100306--83100481 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
83100296 TGTAACCCGC
* * * *
83100306 CCATAAGCGAACTCGGACTTAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
83100352 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
83100402 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
83100445 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
83100482 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:83100500 original size:46 final size:46
Alignment explanation
Indices: 83100355--83100493 Score: 144
Period size: 47 Copynumber: 3.0 Consensus size: 46
83100345 TTCGCATCCA
83100355 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
83100403 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
83100448 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
83100494 CTAGTGACAT
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.37
47 30 0.40
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:83103917 original size:27 final size:27
Alignment explanation
Indices: 83103887--83104064 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
83103877 ATATTGAGTC
* * * *
83103887 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
83103914 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
83103941 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
83103969 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
83103996 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
83104023 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
83104050 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83104065 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:83104026 original size:82 final size:81
Alignment explanation
Indices: 83103908--83104063 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
83103898 TGCTATATAA
* *
83103908 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
83103973 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
83103990 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
83104054 CACTTAGTGC
65 CACTTAGTGC
83104064 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:83108630 original size:34 final size:34
Alignment explanation
Indices: 83108592--83108659 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
83108582 ATGAGATAGG
83108592 TTGGTGTTGCATGTGTTCGGTTAGAGGCAAGCAT
1 TTGGTGTTGCATGTGTTCGGTTAGAGGCAAGCAT
83108626 TTGGTGTTGCATGTGTTCGGTTAGAGGCAAGCAT
1 TTGGTGTTGCATGTGTTCGGTTAGAGGCAAGCAT
83108660 ATTGATGCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.18, C:0.12, G:0.35, T:0.35
Consensus pattern (34 bp):
TTGGTGTTGCATGTGTTCGGTTAGAGGCAAGCAT
Found at i:83109329 original size:40 final size:39
Alignment explanation
Indices: 83109272--83109419 Score: 224
Period size: 40 Copynumber: 3.7 Consensus size: 39
83109262 TCGGATGATA
*
83109272 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
** *
83109312 TTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
83109351 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
83109390 AACCGGGCTAAGTCCCGAAGGGATTTGTGC
1 -ACCGGGCTAAGTCCCGAAGGCATTTGTGC
83109420 TAGTGGCTAT
Statistics
Matches: 98, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 37 0.38
40 61 0.62
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
Found at i:83109403 original size:79 final size:79
Alignment explanation
Indices: 83109272--83109419 Score: 235
Period size: 79 Copynumber: 1.9 Consensus size: 79
83109262 TCGGATGATA
* **
83109272 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATTTCGGGCTAAGTCCCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTAATACCGGGCTAAGTCCCGAAGGCATTT
83109337 GTGCGAGTTATTAT
66 GTGCGAGTTATTAT
* *
83109351 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTAAGTCCCGAAGGGATT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTAAT-ACCGGGCTAAGTCCCGAAGGCATT
83109415 TGTGC
65 TGTGC
83109420 TAGTGGCTAT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 2 0.03
79 61 0.97
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTAATACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTATTAT
Found at i:83109438 original size:79 final size:79
Alignment explanation
Indices: 83109272--83109439 Score: 223
Period size: 79 Copynumber: 2.1 Consensus size: 79
83109262 TCGGATGATA
* **
83109272 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATTTCGGGCTAAGTCCCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTAATACCGGGCTAAGTCCCGAAGGCATTT
* *
83109337 GTGCGAGTTATTAT
66 GTGCGAGTGACTAT
* *
83109351 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTAAGTCCCGAAGGGATT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTAAT-ACCGGGCTAAGTCCCGAAGGCATT
* *
83109415 TGTGCTAGTGGCTAT
65 TGTGCGAGTGACTAT
83109430 ATCC-GGCTAA
1 A-CCGGGCTAA
83109440 ACTCCGAAGG
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 2 0.03
79 74 0.95
80 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTAATACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTGACTAT
Found at i:83109449 original size:39 final size:40
Alignment explanation
Indices: 83109269--83109449 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 40
83109259 TGTTCGGATG
* *
83109269 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACT
1 ATAACCGGGCTAACTCCCGAAGGCATTTGTGCAAG-TGACT
** * * * *
83109309 A-ATTTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATA-ACCGGGCTAACTCCCGAAGGCATTTGTGCAAGTGACT
* *
83109349 AT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAACTCCCGAAGGCATTTGTGCAAGTGACT
* * * *
83109388 ATAACCGGGCTAAGTCCCGAAGGGATTTGTGCTAGTGGCT
1 ATAACCGGGCTAACTCCCGAAGGCATTTGTGCAAGTGACT
*
83109428 ATATCC-GGCTAAACT-CCGAAGG
1 ATAACCGGGCT-AACTCCCGAAGG
83109450 TACTTGGTTT
Statistics
Matches: 123, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
39 48 0.39
40 75 0.61
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAACTCCCGAAGGCATTTGTGCAAGTGACT
Found at i:83114885 original size:11 final size:12
Alignment explanation
Indices: 83114871--83114937 Score: 68
Period size: 12 Copynumber: 5.6 Consensus size: 12
83114861 TTAACACATA
83114871 TTTTTTTT-AA-
1 TTTTTTTTGAAC
*
83114881 TTTTTTTCGAA-
1 TTTTTTTTGAAC
*
83114892 TTTTTTTCGAAC
1 TTTTTTTTGAAC
83114904 TTTTTTTTGAAC
1 TTTTTTTTGAAC
83114916 TTTTTTTTCGAAAC
1 TTTTTTTT-G-AAC
83114930 TTCTTTTT
1 TT-TTTTT
83114938 ACGTACGAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
10 7 0.14
11 13 0.26
12 19 0.38
13 1 0.02
14 5 0.10
15 5 0.10
ACGTcount: A:0.16, C:0.10, G:0.06, T:0.67
Consensus pattern (12 bp):
TTTTTTTTGAAC
Found at i:83114896 original size:12 final size:12
Alignment explanation
Indices: 83114870--83114927 Score: 63
Period size: 11 Copynumber: 5.1 Consensus size: 12
83114860 TTTAACACAT
83114870 ATTTTTTTT--A
1 ATTTTTTTTCGA
83114880 A-TTTTTTTCGA
1 ATTTTTTTTCGA
83114891 A-TTTTTTTCGA
1 ATTTTTTTTCGA
83114902 ACTTTTTTTT-GA
1 A-TTTTTTTTCGA
83114914 ACTTTTTTTTCGA
1 A-TTTTTTTTCGA
83114927 A
1 A
83114928 ACTTCTTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
9 7 0.16
10 1 0.02
11 13 0.30
12 12 0.28
13 10 0.23
ACGTcount: A:0.19, C:0.09, G:0.07, T:0.66
Consensus pattern (12 bp):
ATTTTTTTTCGA
Found at i:83119780 original size:27 final size:27
Alignment explanation
Indices: 83119721--83119872 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
83119711 TAAATTGTAC
*
83119721 AGCACTAAGTGTGCGAGTTGGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
83119749 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
83119776 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
83119803 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
83119831 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
83119858 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
83119873 GACTTAATAT
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
27 71 0.62
28 43 0.38
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:83119787 original size:55 final size:55
Alignment explanation
Indices: 83119721--83119872 Score: 234
Period size: 55 Copynumber: 2.8 Consensus size: 55
83119711 TAAATTGTAC
83119721 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTT-GACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
* * * *
83119776 TGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
* *
83119831 AGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
83119873 GACTTAATAT
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 24 0.27
55 64 0.73
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
Found at i:83119835 original size:82 final size:82
Alignment explanation
Indices: 83119721--83119872 Score: 250
Period size: 82 Copynumber: 1.9 Consensus size: 82
83119711 TAAATTGTAC
* *
83119721 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATGTTGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
83119786 GTGCGAATTGACTATGT
66 GTGCGAATTGACTATGT
* * * *
83119803 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
83119868 GTGCG
66 GTGCG
83119873 GACTTAATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 64 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
GTGCGAATTGACTATGT
Found at i:83121062 original size:82 final size:82
Alignment explanation
Indices: 83120952--83121115 Score: 319
Period size: 82 Copynumber: 2.0 Consensus size: 82
83120942 GGGACAGGGC
*
83120952 CAGAACGGTTTCTGGATTCCCTTCTCCGACCTTGGAAATTCATTATAAATTAACCAGAGATAATT
1 CAGAACGGTTTCTGGATTCCCTGCTCCGACCTTGGAAATTCATTATAAATTAACCAGAGATAATT
83121017 AGGAGTCATGCTATATA
66 AGGAGTCATGCTATATA
83121034 CAGAACGGTTTCTGGATTCCCTGCTCCGACCTTGGAAATTCATTATAAATTAACCAGAGATAATT
1 CAGAACGGTTTCTGGATTCCCTGCTCCGACCTTGGAAATTCATTATAAATTAACCAGAGATAATT
83121099 AGGAGTCATGCTATATA
66 AGGAGTCATGCTATATA
83121116 TGTATAGATT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 81 1.00
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31
Consensus pattern (82 bp):
CAGAACGGTTTCTGGATTCCCTGCTCCGACCTTGGAAATTCATTATAAATTAACCAGAGATAATT
AGGAGTCATGCTATATA
Found at i:83127946 original size:27 final size:27
Alignment explanation
Indices: 83127915--83128092 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
83127905 TAAATTGTAC
83127915 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
83127942 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
83127968 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
83127996 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
83128024 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
83128051 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
83128078 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
83128093 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:83128029 original size:82 final size:81
Alignment explanation
Indices: 83127916--83128071 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
83127906 AAATTGTACA
* *
83127916 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
83127980 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
83127997 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
83128062 TGCGAGTTGA
65 TGCGAATTGA
83128072 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:83128083 original size:82 final size:81
Alignment explanation
Indices: 83127912--83128092 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
83127902 GATTAAATTG
* *
83127912 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
83127977 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
83127993 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
83128057 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
83128075 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
83128093 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:83129991 original size:41 final size:41
Alignment explanation
Indices: 83129881--83130073 Score: 212
Period size: 41 Copynumber: 4.8 Consensus size: 41
83129871 AATACTCGAT
* * *
83129881 ATCTCGCACACTAAGTGCCGTACATAGCCGAAGCTATCTCA
1 ATCTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCA
* * * *
83129922 A-ATCGCACAGTAAGTGCCGTATAGAGCTGAAGCTATCTCA
1 ATCTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCA
* *
83129962 ATCTCGCACACTAAGTGCCATATGTAGCTGAAGCTATCTCG
1 ATCTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCA
* * * * *
83130003 ATCTTGCACATTAAGTGCCATATATAGCCGAAGTTATGTCGA
1 ATCTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTC-A
* *
83130045 A--TCGTACACTAAGTGCCACATATAGCTGA
1 ATCTCGCACACTAAGTGCCATATATAGCTGA
83130074 TTTATCGTCG
Statistics
Matches: 127, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
40 58 0.46
41 68 0.54
42 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (41 bp):
ATCTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCA
Found at i:83130054 original size:81 final size:80
Alignment explanation
Indices: 83129883--83130073 Score: 215
Period size: 81 Copynumber: 2.4 Consensus size: 80
83129873 TACTCGATAT
* * * *
83129883 CTCGCACACTAAGTGCCGTACATAGCCGAAGCTATCTCAAATCGCACAGTAAGTGCCGTATAGAG
1 CTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCAAATCGCACAGTAAGTGCCATATAGAG
*
83129948 CTGAAGCTATCTCAA
66 CCGAAGCTATCTCAA
* * *
83129963 TCTCGCACACTAAGTGCCATATGTAGCTGAAGCTATCTC-GATCTTGCACATTAAGTGCCATATA
1 -CTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCAAATC--GCACAGTAAGTGCCATATA
* * *
83130027 TAGCCGAAGTTATGTCGAA
63 GAGCCGAAGCTATCTC-AA
* *
83130046 -TCGTACACTAAGTGCCACATATAGCTGA
1 CTCGCACACTAAGTGCCATATATAGCTGA
83130074 TTTATCGTCG
Statistics
Matches: 93, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
80 3 0.03
81 59 0.63
82 29 0.31
83 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (80 bp):
CTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCAAATCGCACAGTAAGTGCCATATAGAG
CCGAAGCTATCTCAA
Found at i:83137896 original size:43 final size:43
Alignment explanation
Indices: 83137805--83137910 Score: 122
Period size: 43 Copynumber: 2.5 Consensus size: 43
83137795 TTAACGAGAC
* * * * *
83137805 GTGATTATGTGTAAGACCATGTCTGGGATATTGGCATAATTGT
1 GTGATTACGTGTAAGACCATGTCTAGAACATTGGCATAATTAT
*
83137848 GTGATTACGTGTAAGACCATGTCTAGAACATTGGCATCATTAT
1 GTGATTACGTGTAAGACCATGTCTAGAACATTGGCATAATTAT
* * **
83137891 TTGATTTCAAGTAAGACCAT
1 GTGATTACGTGTAAGACCAT
83137911 AGCTAGGCTA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (43 bp):
GTGATTACGTGTAAGACCATGTCTAGAACATTGGCATAATTAT
Found at i:83139518 original size:25 final size:25
Alignment explanation
Indices: 83139490--83139561 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
83139480 CTCTTTTAAT
83139490 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
* * *
83139515 AACTGGGGCAAATCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
83139540 AACTGGGGCAAAGCCCTTTTTG
1 AACTGGGGCAAAGCCCTTTTTG
83139562 CACTTCCTCC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:83139628 original size:11 final size:11
Alignment explanation
Indices: 83139592--83139666 Score: 57
Period size: 10 Copynumber: 7.1 Consensus size: 11
83139582 ACCCAACCCA
*
83139592 TGCATATAATG
1 TGCATATCATG
* *
83139603 AGTATATCATG
1 TGCATATCATG
83139614 -GCATATCATG
1 TGCATATCATG
*
83139624 TGCATATCA-A
1 TGCATATCATG
** *
83139634 AACATACCATG
1 TGCATATCATG
*
83139645 TGCATATTATG
1 TGCATATCATG
83139656 T-CATATCATG
1 TGCATATCATG
83139666 T
1 T
83139667 ATAATAACAA
Statistics
Matches: 48, Mismatches: 14, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
10 24 0.50
11 24 0.50
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (11 bp):
TGCATATCATG
Found at i:83139630 original size:21 final size:21
Alignment explanation
Indices: 83139606--83139666 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
83139596 TATAATGAGT
*
83139606 ATATCATGGCATATCATGTGC
1 ATATCATGACATATCATGTGC
** *
83139627 ATATCAAAACATACCATGTGC
1 ATATCATGACATATCATGTGC
* *
83139648 ATATTATGTCATATCATGT
1 ATATCATGACATATCATGT
83139667 ATAATAACAA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (21 bp):
ATATCATGACATATCATGTGC
Found at i:83142739 original size:47 final size:47
Alignment explanation
Indices: 83142666--83142801 Score: 150
Period size: 46 Copynumber: 2.9 Consensus size: 47
83142656 ATTTGTTTGT
* * ** *
83142666 GAGCTAGTGTAAGACATGTCTGGGACATGCATTAGCCACGCTATG-A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACGTA
* *
83142712 GAGCCAGTGTAAGACCATGTCTGGGACATGTATCAGCCCCGAGACGTA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGCATCAGCCACGAGACGTA
* * * *
83142760 -AGCCAGTGTACGATATGTCTGGGACATGCATCGGCTACGAGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGA
83142802 TGATAGTTAG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
46 37 0.49
47 37 0.49
48 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.21
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACGTA
Found at i:83142801 original size:46 final size:47
Alignment explanation
Indices: 83142671--83142801 Score: 142
Period size: 47 Copynumber: 2.8 Consensus size: 47
83142661 TTTGTGAGCT
* ** *
83142671 AGTGTAAGA-CATGTCTGGGACATGCATTAGCCACGCTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACGAGACGTA-AGCC
* *
83142717 AGTGTAAGACCATGTCTGGGACATGTATCAGCCCCGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACGAGACGTAAGCC
* * * *
83142764 AGTGTACGA-TATGTCTGGGACATGCATCGGCTACGAGA
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACGAGA
83142802 TGATAGTTAG
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
46 33 0.46
47 37 0.52
48 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.21
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCAGCCACGAGACGTAAGCC
Found at i:83150375 original size:46 final size:46
Alignment explanation
Indices: 83150230--83150381 Score: 171
Period size: 46 Copynumber: 3.3 Consensus size: 46
83150220 GTTTGTTTGT
* * ** *
83150230 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGTTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGA
* * *
83150276 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGACGA
* * *
83150324 GAGCTAGTGTAAGACATGTATGGGACATACATCAACCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACG-A
83150371 -AGCTAGTGTAA
1 GAGCTAGTGTAA
83150382 CACCCCTCAT
Statistics
Matches: 89, Mismatches: 14, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
46 37 0.42
47 28 0.31
48 24 0.27
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGA
Found at i:83152515 original size:43 final size:43
Alignment explanation
Indices: 83152454--83152575 Score: 196
Period size: 43 Copynumber: 2.9 Consensus size: 43
83152444 GAATATTCGA
* *
83152454 ATGATAACCGGGCTAAGTCCCAAAGGCATCTGTGCGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
83152497 ATGATAACCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
83152540 AT-AT--CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
83152576 AGCTATATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
40 31 0.41
42 2 0.03
43 42 0.56
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (43 bp):
ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:83152559 original size:40 final size:40
Alignment explanation
Indices: 83152461--83152601 Score: 196
Period size: 40 Copynumber: 3.5 Consensus size: 40
83152451 CGAATGATAA
* *
83152461 CCGGGCTAAGTCCCAAAGGCATCTGTGCGAGTTACTATGAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
*
83152502 AACCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 --CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
83152544 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
83152584 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
83152602 TACTTGGTTT
Statistics
Matches: 92, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
39 17 0.18
40 38 0.41
42 2 0.02
43 35 0.38
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:83152729 original size:93 final size:93
Alignment explanation
Indices: 83152570--83152750 Score: 353
Period size: 93 Copynumber: 1.9 Consensus size: 93
83152560 AGGCATTTGT
*
83152570 GCGAGTAGCTATATCCGGCTAAATCCCGAAGGTACTTGGTTTGGGAATGAGCGATCTTGCTGTAA
1 GCGAGTAGCTATATCCGGCTAAATCCCGAAGGTACTTGATTTGGGAATGAGCGATCTTGCTGTAA
83152635 TAATTTCAATTAATACGCTCGTAGTTAA
66 TAATTTCAATTAATACGCTCGTAGTTAA
83152663 GCGAGTAGCTATATCCGGCTAAATCCCGAAGGTACTTGATTTGGGAATGAGCGATCTTGCTGTAA
1 GCGAGTAGCTATATCCGGCTAAATCCCGAAGGTACTTGATTTGGGAATGAGCGATCTTGCTGTAA
83152728 TAATTTCAATTAATACGCTCGTA
66 TAATTTCAATTAATACGCTCGTA
83152751 AAATCCCAAC
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 87 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (93 bp):
GCGAGTAGCTATATCCGGCTAAATCCCGAAGGTACTTGATTTGGGAATGAGCGATCTTGCTGTAA
TAATTTCAATTAATACGCTCGTAGTTAA
Found at i:83171079 original size:40 final size:40
Alignment explanation
Indices: 83171035--83171298 Score: 369
Period size: 40 Copynumber: 6.7 Consensus size: 40
83171025 GCTCCTCGTT
*
83171035 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
83171075 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
83171115 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
83171155 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
83171195 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
83171234 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
83171275 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83171299 CATCATTCAA
Statistics
Matches: 207, Mismatches: 11, Indels: 13
0.90 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 147 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:83186089 original size:78 final size:81
Alignment explanation
Indices: 83185946--83186127 Score: 230
Period size: 78 Copynumber: 2.3 Consensus size: 81
83185936 GCTACTCGTT
* **
83185946 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
83186011 ATTTAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
* **
83186026 CAAATGCCTTCGGG-CTTAGCCCGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
83186088 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
83186105 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
83186128 GACATCATTC
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 3 0.03
78 46 0.52
79 26 0.29
80 14 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:83186129 original size:40 final size:40
Alignment explanation
Indices: 83185927--83186129 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
83185917 CGAAATTTAA
** *
83185927 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83185967 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
83186007 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
83186046 CCGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
83186085 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
83186125 CCGGA
1 CCGGA
83186130 CATCATTCAA
Statistics
Matches: 140, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
37 2 0.01
38 22 0.16
39 21 0.15
40 84 0.60
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:83208292 original size:53 final size:53
Alignment explanation
Indices: 83208165--83208418 Score: 266
Period size: 55 Copynumber: 4.8 Consensus size: 53
83208155 ACATGGGTAC
* * * * *
83208165 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAA
* * * * *
83208214 CTTACCATTGCCATGTCTCGACATGGTCTTGCATGGTATCCTTGCCTTATCAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAA
* * * *
83208267 CTCACCAATGCCATGTCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATA--AA
* *
83208322 CTTATCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAA
* *
83208375 CCTTAACAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCT
83208419 GAAACCTTAA
Statistics
Matches: 173, Mismatches: 22, Indels: 14
0.83 0.11 0.07
Matches are distributed among these distances:
49 38 0.22
52 4 0.02
53 45 0.26
54 7 0.04
55 77 0.45
56 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAA
Found at i:83208357 original size:108 final size:110
Alignment explanation
Indices: 83208212--83208412 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 110
83208202 ATCCTTTTGA
* * * ** *
83208212 AACTTACCATTGCCATGTCTCGACATGGTCTTGCATGGTATCCTTGCCTTATCAA-CTCACCAA-
1 AACTTACCAATGCCATGCCTCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCAACAAT
*
83208275 TGCCATGTCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
83208320 AACTTATCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTTAACAAT
1 AACTTACCAATGCCATGCCTCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCAACAAT
83208385 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
83208413 TATCCTGAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
108 48 0.59
109 6 0.07
110 27 0.33
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGCCTCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCAACAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:83216395 original size:16 final size:16
Alignment explanation
Indices: 83216374--83216405 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
83216364 AAGGGGTTCG
83216374 ATACTTTAATCACAAA
1 ATACTTTAATCACAAA
83216390 ATACTTTAATCACAAA
1 ATACTTTAATCACAAA
83216406 CTCAGTAGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (16 bp):
ATACTTTAATCACAAA
Found at i:83222266 original size:24 final size:26
Alignment explanation
Indices: 83222239--83222286 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
83222229 GGTTATCCAT
83222239 AATTCTTA-TTGAT-ATTT-TTTTATG
1 AATT-TTATTTGATAATTTCTTTTATG
83222263 AATTTTATTTGATAATTTCTTTTA
1 AATTTTATTTGATAATTTCTTTTA
83222287 GAAACAAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 9 0.43
25 4 0.19
26 5 0.24
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.62
Consensus pattern (26 bp):
AATTTTATTTGATAATTTCTTTTATG
Found at i:83223435 original size:20 final size:20
Alignment explanation
Indices: 83223410--83223455 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
83223400 GGTCGAGCCA
83223410 CCAGTATTGCAAATAAACTG
1 CCAGTATTGCAAATAAACTG
* * *
83223430 CCAGTATTGGAGATAAACTT
1 CCAGTATTGCAAATAAACTG
83223450 CCAGTA
1 CCAGTA
83223456 GTGTGGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (20 bp):
CCAGTATTGCAAATAAACTG
Found at i:83225445 original size:10 final size:11
Alignment explanation
Indices: 83225430--83225475 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
83225420 ATTTTGATAT
*
83225430 ACATGATTTG-
1 ACATGATATGC
83225440 ACATGATATGC
1 ACATGATATGC
83225451 ACATGATATG-
1 ACATGATATGC
*
83225461 -TATGATATGC
1 ACATGATATGC
83225471 ACATG
1 ACATG
83225476 TTATATTCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 8 0.27
10 9 0.30
11 13 0.43
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.33
Consensus pattern (11 bp):
ACATGATATGC
Found at i:83225456 original size:11 final size:10
Alignment explanation
Indices: 83225424--83225475 Score: 54
Period size: 9 Copynumber: 5.2 Consensus size: 10
83225414 CATGAGATTT
83225424 TGATAT-ACA
1 TGATATGACA
*
83225433 TGATTTGACA
1 TGATATGACA
83225443 TGATATGCACA
1 TGATATG-ACA
*
83225454 TGATATG-TA
1 TGATATGACA
83225463 TGATATGCACA
1 TGATATG-ACA
83225474 TG
1 TG
83225476 TTATATTCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
9 13 0.37
10 9 0.26
11 13 0.37
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:83235730 original size:46 final size:46
Alignment explanation
Indices: 83235677--83235813 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
83235667 TATATATACA
* * * * *
83235677 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCGCATGTC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCGCATATC
* *
83235723 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCGCATATC
*
83235769 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCGCATAT
83235814 ATACACTTCC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.24, C:0.31, G:0.10, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCGCATATC
Found at i:83235858 original size:47 final size:47
Alignment explanation
Indices: 83235787--83236167 Score: 602
Period size: 47 Copynumber: 8.1 Consensus size: 47
83235777 ACACATTTCG
* * * * * *
83235787 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* *
83235834 CATTGGCCATTCTGCCTTGTCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
83235881 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
83235928 CATTGGCCACTCGGCCTTATCACACATATGCATGTTCGCATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
83235975 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
83236022 CATTGGCCTTTCAGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
83236069 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
83236116 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
83236163 CATTG
1 CATTG
83236168 AATCCTAAAT
Statistics
Matches: 312, Mismatches: 21, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 311 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:83235904 original size:22 final size:22
Alignment explanation
Indices: 83235877--83235998 Score: 58
Period size: 23 Copynumber: 5.3 Consensus size: 22
83235867 GTTCACATTC
83235877 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
83235899 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
*
83235923 CATCACATTGGCCACTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
*
83235946 ATCACACATAT-G-CATGTTC-GCATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
83235970 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
83235993 ATCACA
1 ATCACA
83235999 CATATGCATG
Statistics
Matches: 74, Mismatches: 8, Indels: 36
0.63 0.07 0.31
Matches are distributed among these distances:
22 17 0.23
23 23 0.31
24 23 0.31
25 11 0.15
ACGTcount: A:0.25, C:0.31, G:0.14, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:83235975 original size:25 final size:25
Alignment explanation
Indices: 83235946--83236070 Score: 74
Period size: 23 Copynumber: 5.2 Consensus size: 25
83235936 ACTCGGCCTT
83235946 ATCACACATATGCATGTTCGCATTC
1 ATCACACATATGCATGTTCGCATTC
*
83235971 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-GCATTC
*
83235993 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCGCATTC
* *
83236018 AT--CACAT-TGGCCT-TTCAGCCTT-
1 ATCACACATAT-GCATGTTC-GCATTC
* *
83236040 ATCACATATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCGCATTC
83236065 ATCACA
1 ATCACA
83236071 TTGGCCATTC
Statistics
Matches: 74, Mismatches: 10, Indels: 32
0.64 0.09 0.28
Matches are distributed among these distances:
22 12 0.16
23 23 0.31
24 21 0.28
25 18 0.24
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (25 bp):
ATCACACATATGCATGTTCGCATTC
Found at i:83236043 original size:22 final size:22
Alignment explanation
Indices: 83236018--83236093 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
83236008 GTTCACATTC
83236018 ATCACATTGGCCTTTCAGCCTT
1 ATCACATTGGCCTTTCAGCCTT
* * *
83236040 ATCACATATATGCATGTTCA-CATT
1 ATCACAT-T-GGCCT-TTCAGCCTT
* *
83236064 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCTTTCAGCCTT
83236087 ATCACAT
1 ATCACAT
83236094 ATATGCATGT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 17 0.41
23 6 0.15
24 7 0.17
25 11 0.27
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCTTTCAGCCTT
Found at i:83242216 original size:70 final size:70
Alignment explanation
Indices: 83242126--83242270 Score: 272
Period size: 70 Copynumber: 2.1 Consensus size: 70
83242116 ATCGATAAAA
* *
83242126 TTTCGCAACGAAATTTTCACACAGTTATGAAATTGTAATATAAACACTAAAACTTAATCAAAATA
1 TTTCACAACGAAATTTTCACACAATTATGAAATTGTAATATAAACACTAAAACTTAATCAAAATA
83242191 ATTTC
66 ATTTC
83242196 TTTCACAACGAAATTTTCACACAATTATGAAATTGTAATATAAACACTAAAACTTAATCAAAATA
1 TTTCACAACGAAATTTTCACACAATTATGAAATTGTAATATAAACACTAAAACTTAATCAAAATA
83242261 ATTTC
66 ATTTC
83242266 TTTCA
1 TTTCA
83242271 ACCTCGAATT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.45, C:0.16, G:0.06, T:0.34
Consensus pattern (70 bp):
TTTCACAACGAAATTTTCACACAATTATGAAATTGTAATATAAACACTAAAACTTAATCAAAATA
ATTTC
Found at i:83248849 original size:43 final size:44
Alignment explanation
Indices: 83248746--83248858 Score: 140
Period size: 43 Copynumber: 2.6 Consensus size: 44
83248736 TGATTTAGTT
* * * *
83248746 TAAGACCAGGTCTGGGA-TGTTGGCATCGATTTGAGATTTACGTG
1 TAAGACCAAGTCTGGGACAG-TGGCATCGATATGAGATTTACATG
* *
83248790 TAAGACCATGTCTGGGACAGTGGCATCGATATGCGA-TTACATG
1 TAAGACCAAGTCTGGGACAGTGGCATCGATATGAGATTTACATG
*
83248833 TAAGACCAAGTCTGGGACATTGGCAT
1 TAAGACCAAGTCTGGGACAGTGGCAT
83248859 TGTACGAGTT
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
43 30 0.49
44 30 0.49
45 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (44 bp):
TAAGACCAAGTCTGGGACAGTGGCATCGATATGAGATTTACATG
Found at i:83256540 original size:40 final size:40
Alignment explanation
Indices: 83256446--83256670 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 40
83256436 TATTCGAATG
*
83256446 ATATCCGGGCTAAG-TCCTGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTGTGCTA-GTGACT
* * * *
83256487 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
83256527 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
83256567 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * * *
83256607 ATATCCCGGCTAA-TTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
83256647 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
83256671 CTTGTGCAAG
Statistics
Matches: 155, Mismatches: 24, Indels: 11
0.82 0.13 0.06
Matches are distributed among these distances:
39 1 0.01
40 124 0.80
41 27 0.17
42 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:83256626 original size:80 final size:80
Alignment explanation
Indices: 83256446--83256706 Score: 276
Period size: 80 Copynumber: 3.3 Consensus size: 80
83256436 TATTCGAATG
* * * * *
83256446 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
83256511 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
83256527 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
83256592 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * * *
83256607 ATATCCCGGCTAATTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
83256672 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
* *
83256686 ATATCC-GGCTAAATCACGAAG
1 ATATCCGGGCTAAGTCCCGAAG
83256707 ATTACTTGAG
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
78 13 0.09
79 14 0.09
80 93 0.62
81 31 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:83256660 original size:120 final size:121
Alignment explanation
Indices: 83256446--83256670 Score: 287
Period size: 120 Copynumber: 1.9 Consensus size: 121
83256436 TATTCGAATG
** * * *
83256446 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
83256511 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* *
83256567 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCCGG-CTAA-TTCCCGAAG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATA-ACCGGACTAAGAT-CCGAAG
* *
83256629 GCATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
64 GCATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGC
83256671 CTTGTGCAAG
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
119 3 0.03
120 52 0.58
121 34 0.38
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:83264632 original size:62 final size:62
Alignment explanation
Indices: 83264527--83264645 Score: 202
Period size: 62 Copynumber: 1.9 Consensus size: 62
83264517 AGCCGAAATT
*
83264527 GCAAGAATGATAAATGTCTTGTGTTTGAGTTTTGCTAACGAAAATGAAATACGAATGGGCCA
1 GCAAGAATGATAAATGTCTTGTGTTTGAGTTTTGATAACGAAAATGAAATACGAATGGGCCA
* * *
83264589 GCAAGAGTGATAAGTGTCTTGTGTTTGAGTTTTGATAATGAAAATGAAATACGAATG
1 GCAAGAATGATAAATGTCTTGTGTTTGAGTTTTGATAACGAAAATGAAATACGAATG
83264646 TGTCATGATT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 53 1.00
ACGTcount: A:0.35, C:0.08, G:0.25, T:0.31
Consensus pattern (62 bp):
GCAAGAATGATAAATGTCTTGTGTTTGAGTTTTGATAACGAAAATGAAATACGAATGGGCCA
Found at i:83264720 original size:39 final size:40
Alignment explanation
Indices: 83264676--83264753 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 40
83264666 TGTGCATGGT
** *
83264676 TATTCGAATGATGTCCGGGCTAAGTCCCGAAGGC-TTTGA
1 TATTCGAATGATAACCGGGCCAAGTCCCGAAGGCATTTGA
*
83264715 TATTCGGATGATAACCGGGCCAAGTCCCGAAGGCATTTG
1 TATTCGAATGATAACCGGGCCAAGTCCCGAAGGCATTTG
83264754 CGCTAGTGAC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 30 0.88
40 4 0.12
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATTCGAATGATAACCGGGCCAAGTCCCGAAGGCATTTGA
Found at i:83264782 original size:40 final size:40
Alignment explanation
Indices: 83264725--83264911 Score: 286
Period size: 40 Copynumber: 4.7 Consensus size: 40
83264715 TATTCGGATG
* * * * *
83264725 ATAACCGGGCCAAGTCCCGAAGGCATTTGCGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
83264765 AGT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 A-TAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
83264805 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
83264845 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
83264885 ATAACCGGACTAAGTCCCGAAGGCAAT
1 ATAACCGGGCTAAGTCCCGAAGGCAAT
83264912 ATCCGGGCTA
Statistics
Matches: 137, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
39 1 0.01
40 135 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:83264963 original size:65 final size:65
Alignment explanation
Indices: 83264849--83264974 Score: 216
Period size: 65 Copynumber: 1.9 Consensus size: 65
83264839 GTTACTATAA
*
83264849 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGACTAAGTCCCGAAGGCAATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTACAACCGGACTAAGTCCCGAAGGCAATAT
* * *
83264914 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTACAACCGGACTAAGTCCCGAAGGCA
83264975 TTTGTGCGAG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.20
Consensus pattern (65 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTACAACCGGACTAAGTCCCGAAGGCAATAT
Found at i:83264967 original size:40 final size:40
Alignment explanation
Indices: 83264910--83265090 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
83264900 CCCGAAGGCA
83264910 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
83264950 ACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
83264990 ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
83265030 ATATCCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
83265069 ATATCC-GGTTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
83265091 TCCTTGGCTT
Statistics
Matches: 129, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
38 15 0.12
39 15 0.12
40 99 0.77
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:83264991 original size:105 final size:105
Alignment explanation
Indices: 83264809--83265014 Score: 349
Period size: 105 Copynumber: 2.0 Consensus size: 105
83264799 GTTACTATAA
*
83264809 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTACAACCGGGCTAAGTCCCGAAGGCAATTG
*
83264874 TGCGAGTTACTATAACCGGACTAAGTCCCGAAGGCAATAT
66 TGCGAGCTACTATAACCGGACTAAGTCCCGAAGGCAATAT
* * *
83264914 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTACAACCGGGCTAAGTCCCGAAGGCAATTG
* *
83264979 TGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCA
66 TGCGAGCTACTATAACCGGACTAAGTCCCGAAGGCA
83265015 TTGGTGCGAG
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
105 94 1.00
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.21
Consensus pattern (105 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTACAACCGGGCTAAGTCCCGAAGGCAATTG
TGCGAGCTACTATAACCGGACTAAGTCCCGAAGGCAATAT
Found at i:83265031 original size:145 final size:145
Alignment explanation
Indices: 83264768--83265054 Score: 486
Period size: 145 Copynumber: 2.0 Consensus size: 145
83264758 AGTGACTAGT
*
83264768 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAACCGGGCTAAGTCCCGAAGGCAATT
*
83264833 GTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGACTAA
66 GTGCGAGCTACTATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGACTAA
83264898 GTCCCGAAGGCAATA
131 GTCCCGAAGGCAATA
* *
83264913 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAACCGGGCTAAGTCCCGAAGGCAATT
* * *
83264978 GTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGC-ATTGGTGCGAGTTACTATATCCGGGCTA
66 GTGCGAGCTACTATAACCGGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACTATAACCGGACTA
*
83265042 TGTCCCGAAGGCA
130 AGTCCCGAAGGCA
83265055 TTGAGCGAGT
Statistics
Matches: 133, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
144 3 0.02
145 130 0.98
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (145 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAACCGGGCTAAGTCCCGAAGGCAATT
GTGCGAGCTACTATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGACTAA
GTCCCGAAGGCAATA
Found at i:83280086 original size:27 final size:26
Alignment explanation
Indices: 83280038--83280097 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
83280028 GCGAAGCTGC
*
83280038 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
83280065 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
83280091 CATATAT
1 CAGATAT
83280098 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:83280206 original size:67 final size:68
Alignment explanation
Indices: 83280065--83280206 Score: 169
Period size: 71 Copynumber: 2.1 Consensus size: 68
83280055 TCACCAGATA
* * * *
83280065 CAGATATTGTGGCTAGGCCACCAGAACATATATATATATGTGGCGAAGCCACCAGATTACAACGA
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATATA---GGCGAAGCCACCAGATTACAACGA
*
83280130 GGTTGC
63 GGCTGC
* * * *
83280136 CAGATATTGTGACGAAGTCACCAGAACAGATATATATA-GCGAGGCCACCAGATTGCAGCGAGGC
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATATAGGCGAAGCCACCAGATTACAACGAGGC
83280200 TGC
66 TGC
83280203 CAGA
1 CAGA
83280207 ACGCTTCCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 29 0.47
71 33 0.53
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (68 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATATAGGCGAAGCCACCAGATTACAACGAGGC
TGC
Found at i:83282445 original size:79 final size:81
Alignment explanation
Indices: 83282312--83282493 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 81
83282302 AATGATGTCT
* *
83282312 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGT
**
83282376 GCGAGATACTA-ATTTC
66 GCGAGATACTATA-ACC
* * * **
83282392 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAATTG
*
83282454 TGCGAGTTACTATAACC
65 TGCGAGATACTATAACC
*
83282471 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
83282494 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 56 0.64
80 30 0.34
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGT
GCGAGATACTATAACC
Found at i:83282500 original size:40 final size:40
Alignment explanation
Indices: 83282312--83282493 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
83282302 AATGATGTCT
* * * *
83282312 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
* * * *
83282352 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTTC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
83282392 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
83282431 GGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
83282471 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
83282494 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:83282515 original size:79 final size:79
Alignment explanation
Indices: 83282362--83282526 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
83282352 GGACTAAGAT
* ** **
83282362 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
83282427 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
83282441 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
83282504 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
83282520 CCGAAGG
1 CCGAAGG
83282527 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:83285103 original size:33 final size:33
Alignment explanation
Indices: 83285066--83285131 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
83285056 AAAATTCTAG
83285066 AAAAAATATGTAGATGGGCATATGAGTCTAGTT
1 AAAAAATATGTAGATGGGCATATGAGTCTAGTT
83285099 AAAAAATATGTAGATGGGCATATGAGTCTAGTT
1 AAAAAATATGTAGATGGGCATATGAGTCTAGTT
83285132 TCAGGGAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.30
Consensus pattern (33 bp):
AAAAAATATGTAGATGGGCATATGAGTCTAGTT
Found at i:83286737 original size:42 final size:43
Alignment explanation
Indices: 83286655--83286749 Score: 140
Period size: 42 Copynumber: 2.2 Consensus size: 43
83286645 TCTCAGACGT
* *
83286655 GGTCTTACAGGTAATCAAATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAG
*
83286698 GGTCTTACACGAAATCAAATAT-GATGCCGA-TGTCCCAGACAT
1 GGTCTTACACGAAATCAAATATCGATGCC-ACTGTCCCAGACAG
83286740 GGTCTTACAC
1 GGTCTTACAC
83286750 TTAAATCATA
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
42 27 0.56
43 21 0.44
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAG
Found at i:83286756 original size:43 final size:43
Alignment explanation
Indices: 83286648--83286757 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 43
83286638 GCCAACGTCT
* *
83286648 CAGACGTGGTCTTACAGGT-AATCAAATATCGATGCCACTGTCC
1 CAGACATGGTCTTACA-CTAAATCAAATATCGATGCCACTGTCC
* *
83286691 CAGACAGGGTCTTACACGAAATCAAATAT-GATGCCGA-TGTCC
1 CAGACATGGTCTTACACTAAATCAAATATCGATGCC-ACTGTCC
83286733 CAGACATGGTCTTACACTTAAATCA
1 CAGACATGGTCTTACAC-TAAATCA
83286758 TAAATCAGTG
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
42 27 0.47
43 31 0.53
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
CAGACATGGTCTTACACTAAATCAAATATCGATGCCACTGTCC
Found at i:83292507 original size:282 final size:282
Alignment explanation
Indices: 83292003--83292562 Score: 877
Period size: 282 Copynumber: 2.0 Consensus size: 282
83291993 TCTTCAATTC
* * *
83292003 TTTTGCACATTATTGCCTCAGTAGATCCACATTCTCATGCATATTGACTTAGTCTTACAAATTCT
1 TTTTGCACATTATTGCCTCAGTAAATCCACATTCTCATGCATACTGACTTAGCCTTACAAATTCT
* * * *
83292068 CAATCGTATTTTGTAACAGACATACGACCTTACTTCAGTTCAAGAAACTCTTTGCGTTTCTGATC
66 CAATCGTATTCTGTAACAGACATACGACCATACTTCAGTTCAAGAAACTCTTTACATTTCTGATC
* * *
83292133 GATGAATCTTTGACTAATGTATTTCTTTTGGAATTCAACTTGGAAGAAATCCCAGGTAACTTGTT
131 GATGAATCTCTGACTAATGTATTTATTTTGGAATTCAACTTGGAAGAAATCCCAGGTAACTTATT
** * * **
83292198 TTTTCGGAACCACGGATATTAAAGTCTTCCATCAATGATACGTTGTATCTCTCAAAAATGAAACG
196 CCTTCGAAACCACGGATATTAAAGTCTTCCACCAATGATACGTCATATCTCTCAAAAATGAAACG
83292263 ACACACTTAAGGCATTCAAATA
261 ACACACTTAAGGCATTCAAATA
83292285 TTTTGCACATTATTGCCTCAGTAAATCCACATTCTCATGCATACTGACTTAGCCTTACAAATTCT
1 TTTTGCACATTATTGCCTCAGTAAATCCACATTCTCATGCATACTGACTTAGCCTTACAAATTCT
** * * * *
83292350 CGCTTGTATTCTGTAACAGACATACGACCATGCTTCAGTTCAAGAAACTCTTTACATTTTTTATC
66 CAATCGTATTCTGTAACAGACATACGACCATACTTCAGTTCAAGAAACTCTTTACATTTCTGATC
*
83292415 GATGTATCTCTGACTAATGTATTTATTTTGGAATTCAACTTGGAAGAAATCCCAGGTAACTTATT
131 GATGAATCTCTGACTAATGTATTTATTTTGGAATTCAACTTGGAAGAAATCCCAGGTAACTTATT
* * * *
83292480 CCTTCGAAACCACGGATATTAAAGTCTTCCACCAATGATAGGTCATATCTTTCAAAAGTGAAAGG
196 CCTTCGAAACCACGGATATTAAAGTCTTCCACCAATGATACGTCATATCTCTCAAAAATGAAACG
83292545 ACACACTTAAGGCATTCA
261 ACACACTTAAGGCATTCA
83292563 TCCGAAGTCA
Statistics
Matches: 251, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
282 251 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (282 bp):
TTTTGCACATTATTGCCTCAGTAAATCCACATTCTCATGCATACTGACTTAGCCTTACAAATTCT
CAATCGTATTCTGTAACAGACATACGACCATACTTCAGTTCAAGAAACTCTTTACATTTCTGATC
GATGAATCTCTGACTAATGTATTTATTTTGGAATTCAACTTGGAAGAAATCCCAGGTAACTTATT
CCTTCGAAACCACGGATATTAAAGTCTTCCACCAATGATACGTCATATCTCTCAAAAATGAAACG
ACACACTTAAGGCATTCAAATA
Found at i:83293929 original size:34 final size:33
Alignment explanation
Indices: 83293891--83293964 Score: 76
Period size: 34 Copynumber: 2.2 Consensus size: 33
83293881 ATACCACATT
* * *
83293891 CTTACCAATTCCACAATTAATCACATACCAAAAA
1 CTTACCAACTCCA-AAATAAGCACATACCAAAAA
* * *
83293925 CTTACAAAACTCCAAAATAAGCACTTACCACAAA
1 CTTAC-CAACTCCAAAATAAGCACATACCAAAAA
83293959 CTTACC
1 CTTACC
83293965 CAAAATGACC
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
34 26 0.81
35 6 0.19
ACGTcount: A:0.46, C:0.31, G:0.01, T:0.22
Consensus pattern (33 bp):
CTTACCAACTCCAAAATAAGCACATACCAAAAA
Found at i:83294742 original size:44 final size:43
Alignment explanation
Indices: 83294601--83294756 Score: 167
Period size: 43 Copynumber: 3.6 Consensus size: 43
83294591 AGCTCGTACA
* * *
83294601 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCTAACGTCCCAGACATGGTCTTACACGTAAATCAAA-ATCG
* * * *
83294644 ATGC-CACTGTCCTAGACAGGGTATTACACG-AAATC-AAATACG
1 ATGCTAAC-GTCCCAGACATGGTCTTACACGTAAATCAAAAT-CG
* *
83294686 ATGCTGATGTCCCAGACATGGTCTTACACGTAAATCATAAATCG
1 ATGCTAACGTCCCAGACATGGTCTTACACGTAAATCA-AAATCG
83294730 ATGCTAACGTCCCAGACATGGTCTTAC
1 ATGCTAACGTCCCAGACATGGTCTTAC
83294757 GCGAAAACAC
Statistics
Matches: 93, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
41 2 0.02
42 29 0.31
43 31 0.33
44 27 0.29
45 4 0.04
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCTAACGTCCCAGACATGGTCTTACACGTAAATCAAAATCG
Found at i:83295919 original size:27 final size:27
Alignment explanation
Indices: 83295887--83296083 Score: 261
Period size: 27 Copynumber: 7.3 Consensus size: 27
83295877 TACTGAAATG
* *
83295887 CCTCGATTTGTAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
*
83295914 CCTCGATTTATAGAATTACCGTTTCAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * *
83295941 CCTCGATTTACAAAATTACCGCTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
*
83295968 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
83295995 CCTCGATTTACAGAATTATCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * *
83296022 CCTCGATTTACAAAATTACCTTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
*
83296049 CCTC-AGTTTATAAAATTACCGTTTTAC
1 CCTCGA-TTTATAGAATTACCGTTTTAC
83296076 CCTCGATT
1 CCTCGATT
83296084 GTGAAATTAC
Statistics
Matches: 149, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 147 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.09, T:0.39
Consensus pattern (27 bp):
CCTCGATTTATAGAATTACCGTTTTAC
Done.