Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 244 of 290
Found at i:84228349 original size:41 final size:41
Alignment explanation
Indices: 84228304--84228407 Score: 163
Period size: 41 Copynumber: 2.5 Consensus size: 41
84228294 AGTGGCGTAT
* * *
84228304 TTTTGTTAAAACGCTGCTAAAGACCAGAGCATTAGCGGCGC
1 TTTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGC
*
84228345 TTTTGGTAAAATGCCGCTAAAAACCAGAGCATTAGCGGCGC
1 TTTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGC
*
84228386 TTTTGGTAAAACGCCACTAAAA
1 TTTTGGTAAAACGCCGCTAAAA
84228408 GTTATAAACA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (41 bp):
TTTTGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGC
Found at i:84229048 original size:24 final size:24
Alignment explanation
Indices: 84229021--84229069 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
84229011 CATGTATTTA
84229021 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
84229045 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
84229069 T
1 T
84229070 GTTATTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAAAAGTTTATATAAAAATTAAT
Found at i:84229589 original size:14 final size:14
Alignment explanation
Indices: 84229570--84229597 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
84229560 AAAAAACTTA
84229570 AATATTTAATATTT
1 AATATTTAATATTT
84229584 AATATTTAATATTT
1 AATATTTAATATTT
84229598 TAGTCTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
AATATTTAATATTT
Found at i:84229695 original size:10 final size:10
Alignment explanation
Indices: 84229680--84229719 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
84229670 AAAATTTAAA
84229680 AGAAAAAAAT
1 AGAAAAAAAT
84229690 AG-AAAAAAT
1 AGAAAAAAAT
84229699 AGAAAAAAAAT
1 AG-AAAAAAAT
*
84229710 ATAAAAAAAT
1 AGAAAAAAAT
84229720 TAAAATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 9 0.33
10 10 0.37
11 8 0.30
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.12
Consensus pattern (10 bp):
AGAAAAAAAT
Found at i:84229706 original size:11 final size:11
Alignment explanation
Indices: 84229682--84229718 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
84229672 AATTTAAAAG
84229682 AAAAAAATAG-
1 AAAAAAATAGA
84229692 -AAAAAATAGA
1 AAAAAAATAGA
*
84229702 AAAAAAATATA
1 AAAAAAATAGA
84229713 AAAAAA
1 AAAAAA
84229719 TTAAAATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
9 9 0.38
11 15 0.62
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.11
Consensus pattern (11 bp):
AAAAAAATAGA
Found at i:84231681 original size:9 final size:9
Alignment explanation
Indices: 84231667--84231694 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
84231657 AATAAAAAAA
84231667 TGATGATGC
1 TGATGATGC
84231676 TGATGATGC
1 TGATGATGC
84231685 TGATGATGC
1 TGATGATGC
84231694 T
1 T
84231695 TGATTGCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.32, T:0.36
Consensus pattern (9 bp):
TGATGATGC
Found at i:84233613 original size:76 final size:76
Alignment explanation
Indices: 84233530--84233683 Score: 299
Period size: 76 Copynumber: 2.0 Consensus size: 76
84233520 TTAGTTTTGA
84233530 TTCTAAATTTTTATTTTTATTTTAATATTTAAGATAACTTGAGTTCTAACTTTTGGATGTTAATT
1 TTCTAAATTTTTATTTTTATTTTAATATTTAAGATAACTTGAGTTCTAACTTTTGGATGTTAATT
84233595 GTGTTATTAAT
66 GTGTTATTAAT
*
84233606 TTCTAAATTTTTATTTTTATTTTAATATTTAAGATAACTTGAGTTCTAACTTTTGGATTTTAATT
1 TTCTAAATTTTTATTTTTATTTTAATATTTAAGATAACTTGAGTTCTAACTTTTGGATGTTAATT
84233671 GTGTTATTAAT
66 GTGTTATTAAT
84233682 TT
1 TT
84233684 ATTATTTTAA
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.29, C:0.05, G:0.10, T:0.56
Consensus pattern (76 bp):
TTCTAAATTTTTATTTTTATTTTAATATTTAAGATAACTTGAGTTCTAACTTTTGGATGTTAATT
GTGTTATTAAT
Found at i:84233666 original size:38 final size:38
Alignment explanation
Indices: 84233548--84233669 Score: 99
Period size: 38 Copynumber: 3.2 Consensus size: 38
84233538 TTTTATTTTT
84233548 ATTTTAATATTTAAGATAACTTGAGTTCTAACTTTTGG
1 ATTTTAATATTTAAGATAACTTGAGTTCTAACTTTTGG
* * * * * * * * *
84233586 ATGTTAAT-TGTGTTA-TTAATTTCTAAATTTTTA-TTTT-T
1 ATTTTAATAT-T-TAAGATAA-CT-TGAGTTCTAACTTTTGG
84233624 ATTTTAATATTTAAGATAACTTGAGTTCTAACTTTTGG
1 ATTTTAATATTTAAGATAACTTGAGTTCTAACTTTTGG
84233662 ATTTTAAT
1 ATTTTAAT
84233670 TGTGTTATTA
Statistics
Matches: 58, Mismatches: 18, Indels: 16
0.63 0.20 0.17
Matches are distributed among these distances:
36 6 0.10
37 8 0.14
38 30 0.52
39 8 0.14
40 6 0.10
ACGTcount: A:0.30, C:0.06, G:0.11, T:0.53
Consensus pattern (38 bp):
ATTTTAATATTTAAGATAACTTGAGTTCTAACTTTTGG
Found at i:84233706 original size:76 final size:76
Alignment explanation
Indices: 84233550--84233706 Score: 235
Period size: 76 Copynumber: 2.1 Consensus size: 76
84233540 TTATTTTTAT
*
84233550 TTTAATATTTAAGATAACTTGAGTTCTAACTTTTGGATGTTAATTGTGTTATTAATTTCTAAATT
1 TTTAATATTTAAGATAACTTGAGTTCTAACTTTTGGATGTTAATTGTGTTATTAATTTATAAATT
* * * *
84233615 TTTATTTTTAT
66 TTAATTCTAAA
* *
84233626 TTTAATATTTAAGATAACTTGAGTTCTAACTTTTGGATTTTAATTGTGTTATTAATTTAT-TATT
1 TTTAATATTTAAGATAACTTGAGTTCTAACTTTTGGATGTTAATTGTGTTATTAATTTATAAATT
84233690 TTAAATTCTAAA
66 TT-AATTCTAAA
84233702 TTTAA
1 TTTAA
84233707 ATTCATTAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
75 5 0.07
76 68 0.93
ACGTcount: A:0.31, C:0.05, G:0.10, T:0.54
Consensus pattern (76 bp):
TTTAATATTTAAGATAACTTGAGTTCTAACTTTTGGATGTTAATTGTGTTATTAATTTATAAATT
TTAATTCTAAA
Found at i:84233948 original size:43 final size:43
Alignment explanation
Indices: 84233884--84234042 Score: 234
Period size: 43 Copynumber: 3.7 Consensus size: 43
84233874 CGCTAAAGTC
*
84233884 AAAAA-CGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAG
1 AAAAAGCGTCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAG
* *
84233926 AAAAAGCGTCGCTAAAGTTCATGATCTTTAGCGGCATTTGTAG
1 AAAAAGCGTCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAG
* *
84233969 AAAAAGCGTCGCTAAAGGTCTTGATCTTTAGCGGCGTTTGTGG
1 AAAAAGCGTCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAG
*
84234012 AAAATTGC--CGCTAAAGGTCATGATCTTTAGC
1 AAAA-AGCGTCGCTAAAGGTCATGATCTTTAGC
84234043 TTTTCAAATA
Statistics
Matches: 106, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
42 27 0.25
43 77 0.73
44 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (43 bp):
AAAAAGCGTCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAG
Found at i:84241379 original size:487 final size:486
Alignment explanation
Indices: 84240466--84241447 Score: 1739
Period size: 487 Copynumber: 2.0 Consensus size: 486
84240456 TAATTTCTAG
84240466 AAAACAAACAGAATATTAGATATTAAGGTATTAAAATCAATATTTGTAGCACAATTTGTAATTAA
1 AAAAC-AACAGAATATTAGATATTAAGGTATTAAAATCAATATTTGTAGCACAATTTGTAATTAA
*
84240531 TGCTACAAGAATGCATCAATATTTGATTTCACAACTTTTATTGTCATATGAAATAAAGAAATGAA
65 TGCTACAAGAATGCATCAATATTTGATTCCACAACTTTTATTGTCATATGAAATAAAGAAATGAA
84240596 TAAATTAATATACATACTGCAAATTTAAATACTTTGAGCTCAATATCATGATTATAAATCTCATA
130 TAAATTAATATACATACTGCAAATTTAAATACTTTGAGCTCAATATCATGATTATAAATCTCATA
* ** * *
84240661 TAGGTATTATCCTAATTCAACAACATCATTTCTTTAGCTTTCAATCAATATAAGCAAAGATAATA
195 GAAATATTATCCTAATTCAACAACATCATTTCCTTAGCTTTCAATCAACATAAGCAAAGATAATA
* *
84240726 TCATCTTAAAGGTTTCTCCAAATTAAATATTGCACAGAATAAAGACATGGTTGCCAATGTTTGTC
260 TCATCTTAAAGGCTTCTCCAAATTAAATATTGCACAGAATAAAGACATGGTTGCCAATGTTTGCC
84240791 AATGTTACTACCAACAAAGAAAAATATGAAATTTAACAAAAGCTTATATATATAATGTTGGAATC
325 AATGTTACTACCAACAAAGAAAAATATGAAATTTAACAAAAGCTTATATATATAATGTTGGAATC
*
84240856 TACATTTGTTAATTAACTAAGAAAATAGAGTGTCTGATTGGAAGTAATGGTTGTGGTGCCCATTA
390 TACATTTGTTAATTAACTAAGAAAATAGAGTGTCTGAATGGAAGTAATGGTTGTGGTGCCCATTA
*
84240921 ATGGCAGTATTGCATCAAGAACAACTAAATAA
455 ATGGCAGCATTGCATCAAGAACAACTAAATAA
* *
84240953 AAAACAACAGAATCTTAGATATTAAAGGTGTTAAAATCAATATTTGTAGCACAATTTGTAATTAA
1 AAAACAACAGAATATTAGATATT-AAGGTATTAAAATCAATATTTGTAGCACAATTTGTAATTAA
* *
84241018 TGCTACAAGAATGCATCAATATTTGATTCCACAACTTTTATTTTCATATGAAATAAAGAAATGCA
65 TGCTACAAGAATGCATCAATATTTGATTCCACAACTTTTATTGTCATATGAAATAAAGAAATGAA
*
84241083 TAAATTAATATACATACTGCAAATTTAAATACTTTGAGCTCAATATCATGATTATAGATCTCATA
130 TAAATTAATATACATACTGCAAATTTAAATACTTTGAGCTCAATATCATGATTATAAATCTCATA
* *
84241148 GAAATATTATCCTAATTCAACACCATCATTTCCTTAGCTTTCAATCAACATAAGCAAAGGTAATA
195 GAAATATTATCCTAATTCAACAACATCATTTCCTTAGCTTTCAATCAACATAAGCAAAGATAATA
* *
84241213 TCATCTTAAAGGCTTCTCCAAATTAAATATTGCAGAGAATAAAGATATGGTTGCCAATGTTTGCC
260 TCATCTTAAAGGCTTCTCCAAATTAAATATTGCACAGAATAAAGACATGGTTGCCAATGTTTGCC
*
84241278 AATGTTACTACCAACAAAGAAAAATCTGAAATTTAACAAAAGCTTATATATATAATGTTGGAATC
325 AATGTTACTACCAACAAAGAAAAATATGAAATTTAACAAAAGCTTATATATATAATGTTGGAATC
*
84241343 TACATTTGTTAATTAACTAAGAAAATAGAGTGTCTGAATGGAAGTAATGGTTGTGGTGCCCATTG
390 TACATTTGTTAATTAACTAAGAAAATAGAGTGTCTGAATGGAAGTAATGGTTGTGGTGCCCATTA
*
84241408 ATGGTAGCATTGCATCAAGAACAACTAAATAA
455 ATGGCAGCATTGCATCAAGAACAACTAAATAA
84241440 AAACACAA
1 AAA-ACAA
84241448 GTTGTTTACG
Statistics
Matches: 471, Mismatches: 22, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
486 17 0.04
487 450 0.96
488 4 0.01
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (486 bp):
AAAACAACAGAATATTAGATATTAAGGTATTAAAATCAATATTTGTAGCACAATTTGTAATTAAT
GCTACAAGAATGCATCAATATTTGATTCCACAACTTTTATTGTCATATGAAATAAAGAAATGAAT
AAATTAATATACATACTGCAAATTTAAATACTTTGAGCTCAATATCATGATTATAAATCTCATAG
AAATATTATCCTAATTCAACAACATCATTTCCTTAGCTTTCAATCAACATAAGCAAAGATAATAT
CATCTTAAAGGCTTCTCCAAATTAAATATTGCACAGAATAAAGACATGGTTGCCAATGTTTGCCA
ATGTTACTACCAACAAAGAAAAATATGAAATTTAACAAAAGCTTATATATATAATGTTGGAATCT
ACATTTGTTAATTAACTAAGAAAATAGAGTGTCTGAATGGAAGTAATGGTTGTGGTGCCCATTAA
TGGCAGCATTGCATCAAGAACAACTAAATAA
Found at i:84248673 original size:39 final size:38
Alignment explanation
Indices: 84248596--84248673 Score: 86
Period size: 39 Copynumber: 2.0 Consensus size: 38
84248586 TTATGAGTAC
* * **
84248596 TGTGATATATGCTTAAATGTTATGTGATTTTATGTGTAA
1 TGTGATATATGCTTAAAAGTAATGTGA-TTTACATGTAA
84248635 TGTGATATATGCTTAAAAGTGAATGTGA-TTACCATGTAA
1 TGTGATATATGCTTAAAAGT-AATGTGATTTA-CATGTAA
84248674 ATAAACTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
38 3 0.09
39 24 0.73
40 6 0.18
ACGTcount: A:0.32, C:0.05, G:0.21, T:0.42
Consensus pattern (38 bp):
TGTGATATATGCTTAAAAGTAATGTGATTTACATGTAA
Found at i:84251605 original size:40 final size:40
Alignment explanation
Indices: 84251516--84251779 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
84251506 TTGAATGATG
* *
84251516 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
84251555 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
84251595 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84251634 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
84251674 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
84251714 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
84251755 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84251780 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:84251797 original size:120 final size:118
Alignment explanation
Indices: 84251516--84251812 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
84251506 TTGAATGATG
* *
84251516 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
84251576 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
84251634 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
84251699 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
84251755 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
84251813 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:84259694 original size:39 final size:40
Alignment explanation
Indices: 84259599--84259860 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
84259589 TTGAATGATG
*
84259599 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
84259637 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
84259678 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
84259717 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
84259756 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
84259795 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
84259834 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
84259861 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:84260516 original size:191 final size:189
Alignment explanation
Indices: 84260289--84260668 Score: 724
Period size: 191 Copynumber: 2.0 Consensus size: 189
84260279 GTCGCCCACA
84260289 CTATCAAAGCCCCCTTTTGGTACAATTTTGGTTGAACTTCGAAATGGCATGTATAGGACTACCCG
1 CTATCAAAGCCCCCTTTTGGTACAATTTTGGTTGAACTTCGAAATGGCATGTATAGGACTACCCG
84260354 TTTGTTGTGGGTCGTGGACCCTTTGGACTTGTATAAATTTTGGATAGCCATGCGAAAATGGCTTA
66 TTTGTTGTGGGTCGTGGACCCTTTGGACTTGTATAAATTTTGGATAGCCATGCGAAAATGGCTTA
*
84260419 TATGTGTTTGAGTATATTGTTATAATCATTTGGTGTGGATATGCTTGACAAGGATTGGC
131 TATGTGTTTGAGTATAATGTTATAATCATTTGGTGTGGATATGCTTGACAAGGATTGGC
84260478 CTATCAAAGCCCCTCCTTTTGGTACAATTTTGGTTGAACTTCGAAATGGCATGTATAGGACTACC
1 CTATCAAAG-CCC-CCTTTTGGTACAATTTTGGTTGAACTTCGAAATGGCATGTATAGGACTACC
84260543 CGTTTGTTGTGGGTCGTGGACCCTTTGGACTTGTATAAATTTTGGATAGCCATGCGAAAATGGCT
64 CGTTTGTTGTGGGTCGTGGACCCTTTGGACTTGTATAAATTTTGGATAGCCATGCGAAAATGGCT
*
84260608 TATATGTGTTTGAGTATAATGTTATAATCATTTGGTGTGGATTTGCTTGACAAGGATTGGC
129 TATATGTGTTTGAGTATAATGTTATAATCATTTGGTGTGGATATGCTTGACAAGGATTGGC
84260669 TACGGGGATG
Statistics
Matches: 187, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
189 9 0.05
190 3 0.02
191 175 0.94
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.37
Consensus pattern (189 bp):
CTATCAAAGCCCCCTTTTGGTACAATTTTGGTTGAACTTCGAAATGGCATGTATAGGACTACCCG
TTTGTTGTGGGTCGTGGACCCTTTGGACTTGTATAAATTTTGGATAGCCATGCGAAAATGGCTTA
TATGTGTTTGAGTATAATGTTATAATCATTTGGTGTGGATATGCTTGACAAGGATTGGC
Found at i:84262327 original size:33 final size:34
Alignment explanation
Indices: 84262274--84262371 Score: 96
Period size: 34 Copynumber: 2.9 Consensus size: 34
84262264 CTGATTGCAT
* *
84262274 ACTG-TACTGATTCT-ATAATGGGCTTAGGCCC-C
1 ACTGATACTAATTCTGA-AATGGGCTAAGGCCCAC
* *
84262306 ACTGATACT-GTTACTGAAATGGGCTCAGGCCCAC
1 ACTGATACTAATT-CTGAAATGGGCTAAGGCCCAC
* *
84262340 ACTGTTTCTAATTCTGAAATGGGCTAAGGCCC
1 ACTGATACTAATTCTGAAATGGGCTAAGGCCC
84262372 TAACTGAAAC
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
32 6 0.11
33 20 0.36
34 27 0.49
35 2 0.04
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (34 bp):
ACTGATACTAATTCTGAAATGGGCTAAGGCCCAC
Found at i:84269004 original size:5 final size:5
Alignment explanation
Indices: 84268994--84269021 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
84268984 TCATGCATGT
84268994 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
84269022 GTTAGCTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:84270264 original size:40 final size:40
Alignment explanation
Indices: 84270166--84270349 Score: 255
Period size: 40 Copynumber: 4.6 Consensus size: 40
84270156 TGGATGATAA
*
84270166 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
84270207 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
84270247 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
84270287 CCGGGCTAAGTCCCGAAGGCATTGGCGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
84270327 CTGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
84270350 GAGCGAATAG
Statistics
Matches: 130, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
40 102 0.78
41 24 0.18
42 4 0.03
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:84273586 original size:24 final size:24
Alignment explanation
Indices: 84273554--84273604 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
84273544 CGAATATATT
84273554 CATGTATAAGTAAGTGTAATTAAG
1 CATGTATAAGTAAGTGTAATTAAG
84273578 CATGTATAAGTAAGTGTAATTAAG
1 CATGTATAAGTAAGTGTAATTAAG
84273602 CAT
1 CAT
84273605 ACACAAGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.06, G:0.20, T:0.33
Consensus pattern (24 bp):
CATGTATAAGTAAGTGTAATTAAG
Found at i:84273612 original size:24 final size:24
Alignment explanation
Indices: 84273561--84273613 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
84273551 ATTCATGTAT
** *
84273561 AAGTAAGTGTAATTAAGCATGTAT
1 AAGTAAGTGTAATTAAGCATACAC
84273585 AAGTAAGTGTAATTAAGCATACAC
1 AAGTAAGTGTAATTAAGCATACAC
84273609 AAGTA
1 AAGTA
84273614 TGCTTTACAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.45, C:0.08, G:0.19, T:0.28
Consensus pattern (24 bp):
AAGTAAGTGTAATTAAGCATACAC
Found at i:84275257 original size:83 final size:81
Alignment explanation
Indices: 84275109--84275259 Score: 205
Period size: 81 Copynumber: 1.8 Consensus size: 81
84275099 TATGATAAAT
* ** * *
84275109 CACCGGCATAAAGCTTGCTAGGCATAAGCTTGTATTACACACCGGCACAAGGCTTGCTAGACTCA
1 CACCGGCATAAAGCCTGCTAGGCATAAGCCCGTATTAAACACCAGCACAAGGCTTGCTAGACTCA
84275174 AAGTCTGATTTTTATA
66 AAGTCTGATTTTTATA
* *
84275190 CACCGGCATTAAGCCTGCTAGGCATAAAGCCCG-ATTAAATTCACCAGCACAAGGCTTGCTAGGC
1 CACCGGCATAAAGCCTGCTAGGCAT-AAGCCCGTATTAAA--CACCAGCACAAGGCTTGCTAGAC
84275254 TCAAAG
63 TCAAAG
84275260 CCCGAATATC
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
81 28 0.47
82 5 0.08
83 27 0.45
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (81 bp):
CACCGGCATAAAGCCTGCTAGGCATAAGCCCGTATTAAACACCAGCACAAGGCTTGCTAGACTCA
AAGTCTGATTTTTATA
Found at i:84284562 original size:48 final size:48
Alignment explanation
Indices: 84284514--84284758 Score: 235
Period size: 48 Copynumber: 5.1 Consensus size: 48
84284504 TAGGATATGA
* * *
84284514 CATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGA
1 CATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGG
* * * *
84284562 CATCAG-CATTGTTATGAGAGCTAGTGTAAGACCATGTCTGAGACATGG
1 CATCAGCCA-TATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGG
* * * * *
84284610 CATCAGCCTTAATATGCGAGCCAGTGTAAGACCATATTTGGAACATGG
1 CATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGG
* ** * * * *
84284658 CATAAGCTTTGTTAT-ATGTGTCAGTGTAAGACCATGTCTGGGACATGG
1 CATCAGCCATATTATGA-GAGCCAGTGTAAGACCATGTTTGGGACATGG
* *
84284706 CTTCAG-CATCGATGTGTGAGAGCCAGTGTAAGACCATGTTTGGGACATGG
1 CATCAGCCAT--AT-TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGG
84284756 CAT
1 CAT
84284759 TGACATTTTA
Statistics
Matches: 154, Mismatches: 36, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
47 3 0.02
48 116 0.75
49 2 0.01
50 32 0.21
51 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (48 bp):
CATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGG
Found at i:84284695 original size:96 final size:98
Alignment explanation
Indices: 84284526--84284758 Score: 303
Period size: 96 Copynumber: 2.4 Consensus size: 98
84284516 TCGGCCACAT
* *
84284526 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGACATCAGCATTGTTATGAGAGCTAGTGTAA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATAAGCATTGTTATGAGAGCTAGTGTAA
* *
84284591 GACCATGTCTGAGACATGGCATCAGCCT-TA-A
66 GACCATGTCTGAGACATGGCATCAGCATCGATA
* * * * *
84284622 TATGCGAGCCAGTGTAAGACCATATTTGGAACATGGCATAAGCTTTGTTAT-ATGTG-TCAGTGT
1 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATAAGCATTGTTATGA-GAGCT-AGTGT
* * *
84284685 AAGACCATGTCTGGGACATGGCTTCAGCATCGATG
64 AAGACCATGTCTGAGACATGGCATCAGCATCGATA
*
84284720 TGTGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCAT
1 TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCAT
84284759 TGACATTTTA
Statistics
Matches: 117, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
95 2 0.02
96 79 0.68
97 1 0.01
98 35 0.30
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (98 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATAAGCATTGTTATGAGAGCTAGTGTAA
GACCATGTCTGAGACATGGCATCAGCATCGATA
Found at i:84289983 original size:79 final size:81
Alignment explanation
Indices: 84289850--84290031 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 81
84289840 AATGATGTCT
*
84289850 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
*
84289914 GCGAGATACTA-ATTCC
66 GCGAGATACTATA-ACC
* * * **
84289930 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTG
*
84289992 TGCGAGTTACTATAACC
65 TGCGAGATACTATAACC
*
84290009 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
84290032 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAGATACTATAACC
Found at i:84290045 original size:40 final size:40
Alignment explanation
Indices: 84289850--84290031 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
84289840 AATGATGTCT
* * * *
84289850 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
* * *
84289890 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACC
84289930 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
*
84289969 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
84290009 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
84290032 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:84290053 original size:79 final size:79
Alignment explanation
Indices: 84289900--84290064 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
84289890 GGACTAAGAT
* **
84289900 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
84289965 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
84289979 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
84290042 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
84290058 CCGAAGG
1 CCGAAGG
84290065 TATGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:84290377 original size:149 final size:149
Alignment explanation
Indices: 84290107--84290400 Score: 588
Period size: 149 Copynumber: 2.0 Consensus size: 149
84290097 AAAATTTCAG
84290107 TTAATACGCTTGAAACATCCCAACATTGAGGTATGTTTCGTATGTGCTTTGAATTAGTTGAGCCC
1 TTAATACGCTTGAAACATCCCAACATTGAGGTATGTTTCGTATGTGCTTTGAATTAGTTGAGCCC
84290172 TTACAAATAAGTATTCGCTCAGTTGATAAATGAGCTACCGGCCTTTGGCTAAGTTGATCTTTGTG
66 TTACAAATAAGTATTCGCTCAGTTGATAAATGAGCTACCGGCCTTTGGCTAAGTTGATCTTTGTG
84290237 TATGAATAAAAGGGTTGGT
131 TATGAATAAAAGGGTTGGT
84290256 TTAATACGCTTGAAACATCCCAACATTGAGGTATGTTTCGTATGTGCTTTGAATTAGTTGAGCCC
1 TTAATACGCTTGAAACATCCCAACATTGAGGTATGTTTCGTATGTGCTTTGAATTAGTTGAGCCC
84290321 TTACAAATAAGTATTCGCTCAGTTGATAAATGAGCTACCGGCCTTTGGCTAAGTTGATCTTTGTG
66 TTACAAATAAGTATTCGCTCAGTTGATAAATGAGCTACCGGCCTTTGGCTAAGTTGATCTTTGTG
84290386 TATGAATAAAAGGGT
131 TATGAATAAAAGGGT
84290401 GATGAATGTG
Statistics
Matches: 145, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
149 145 1.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (149 bp):
TTAATACGCTTGAAACATCCCAACATTGAGGTATGTTTCGTATGTGCTTTGAATTAGTTGAGCCC
TTACAAATAAGTATTCGCTCAGTTGATAAATGAGCTACCGGCCTTTGGCTAAGTTGATCTTTGTG
TATGAATAAAAGGGTTGGT
Found at i:84290497 original size:47 final size:47
Alignment explanation
Indices: 84290399--84290521 Score: 147
Period size: 47 Copynumber: 2.6 Consensus size: 47
84290389 GAATAAAAGG
* * * * *
84290399 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGACCAAC
* * *
84290446 GTGATGAATGTGAAGGTGTATATATGTGACAGGGCCGAGTGACCAAC
1 GTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGACCAAC
* * *
84290493 GTGATGGATGTGAAAGTGCATAAATGTGA
1 GTGATGAATGTGAAAGTGTATATATGTGA
84290522 GCTTGATTTG
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.32, C:0.09, G:0.33, T:0.27
Consensus pattern (47 bp):
GTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGACCAAC
Found at i:84292053 original size:71 final size:71
Alignment explanation
Indices: 84291933--84292096 Score: 188
Period size: 71 Copynumber: 2.3 Consensus size: 71
84291923 GCTTCATTTA
* * * * * **
84291933 TCGGTAGAA-CCCTTCAGAGTATTGATAGAAGTGTAGGGGATACTGAACTTTGGCTACTGACTTT
1 TCGGTAGAAGTCC-TCAAAGTATTGATAGAAGTGCAGGAGATACTAAACTTTGGCTACTGACTAG
*
84291997 ACTTGTT
65 ACTTATT
*
84292004 TCGGTAGAAGTCCTCAAAGTATT-AGTAGAAGTGCAGGAGATGCTAAACTTTGGCTACTGACTAG
1 TCGGTAGAAGTCCTCAAAGTATTGA-TAGAAGTGCAGGAGATACTAAACTTTGGCTACTGACTAG
84292068 ACTTATT
65 ACTTATT
* * *
84292075 TTGGTAGAAGTCGTCAAGGTAT
1 TCGGTAGAAGTCCTCAAAGTAT
84292097 AGGTAGTACT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
70 1 0.01
71 76 0.96
72 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.32
Consensus pattern (71 bp):
TCGGTAGAAGTCCTCAAAGTATTGATAGAAGTGCAGGAGATACTAAACTTTGGCTACTGACTAGA
CTTATT
Found at i:84297133 original size:37 final size:37
Alignment explanation
Indices: 84297083--84297161 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
84297073 TTATTACGAA
* *
84297083 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
84297120 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
84297157 GTCTT
1 GTCTT
84297162 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:84297367 original size:47 final size:47
Alignment explanation
Indices: 84297280--84297700 Score: 698
Period size: 47 Copynumber: 8.9 Consensus size: 47
84297270 CCCTTCGGAA
* * * * * *
84297280 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
84297327 CCTGTCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84297374 CTTATCACATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84297421 CTTATCACATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84297468 CTTATCACATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84297515 CTTATCACATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84297562 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84297609 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84297658 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
84297701 CGCCATACTA
Statistics
Matches: 356, Mismatches: 16, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 310 0.87
49 46 0.13
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:84306291 original size:42 final size:43
Alignment explanation
Indices: 84306245--84306367 Score: 121
Period size: 42 Copynumber: 2.9 Consensus size: 43
84306235 TTACATGGAA
84306245 TCTCGTATTGATGCCAATAGCC-A-ACTATGGTG-TTACACAAAG
1 TCTCGTATTGATGCCAATAGCCTAGA-TATGG-GCTTACACAAAG
* * **
84306287 TCTCGTATCGATGCC-ATATCCTAGATATGGGCTTACACGTAG
1 TCTCGTATTGATGCCAATAGCCTAGATATGGGCTTACACAAAG
* ** *
84306329 TCTCATATTGATGCC-ATATTCTAGATATGGTCTTACACA
1 TCTCGTATTGATGCCAATAGCCTAGATATGGGCTTACACA
84306368 TAGACTTAGT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
41 6 0.09
42 62 0.90
43 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Consensus pattern (43 bp):
TCTCGTATTGATGCCAATAGCCTAGATATGGGCTTACACAAAG
Found at i:84321994 original size:37 final size:37
Alignment explanation
Indices: 84321944--84322022 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
84321934 TTATTACGAA
* *
84321944 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
84321981 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
84322018 GTCTT
1 GTCTT
84322023 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:84322214 original size:47 final size:47
Alignment explanation
Indices: 84322140--84322360 Score: 415
Period size: 47 Copynumber: 4.7 Consensus size: 47
84322130 GCCCTTCGGG
84322140 ACTTATCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
84322188 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
84322235 ACTTTCACATTCATCACATCAGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
84322282 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
84322329 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
84322361 ATACTATCAT
Statistics
Matches: 169, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
47 165 0.98
48 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:84322940 original size:74 final size:74
Alignment explanation
Indices: 84322795--84322941 Score: 233
Period size: 74 Copynumber: 2.0 Consensus size: 74
84322785 AGCATACAAA
* *
84322795 TTTTATCTTATAACCATTTTTGTACAATTTATAATGATTTTCTAAAAACAGAACATGGGATTTCG
1 TTTTATCTTATAACCATTTTTGTACAATTTATAATGATTTTCTAAAAACAGAACATGGGATTACA
84322860 GAGTCATTT
66 GAGTCATTT
* *
84322869 TTTTATCTTATAACCATTTTTTTACAATTTATAATGATTTTCTAAAAACGGAACA-GAGGATTAC
1 TTTTATCTTATAACCATTTTTGTACAATTTATAATGATTTTCTAAAAACAGAACATG-GGATTAC
*
84322933 AGTGTCATT
65 AGAGTCATT
84322942 CTGCACTGTC
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
73 1 0.01
74 66 0.99
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (74 bp):
TTTTATCTTATAACCATTTTTGTACAATTTATAATGATTTTCTAAAAACAGAACATGGGATTACA
GAGTCATTT
Found at i:84325739 original size:40 final size:40
Alignment explanation
Indices: 84325453--84325793 Score: 375
Period size: 40 Copynumber: 8.5 Consensus size: 40
84325443 AGCATGATTA
* * * *
84325453 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * * *
84325493 CTCTTTGGGGTTTAGCACAGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
84325533 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
84325573 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
84325613 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
84325653 CTCTTTGGGACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** * * *
84325693 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* ** *
84325734 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAATG
84325774 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
84325794 CATCATTCGA
Statistics
Matches: 257, Mismatches: 39, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
39 3 0.01
40 234 0.91
41 20 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:84326141 original size:29 final size:29
Alignment explanation
Indices: 84326099--84326177 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
84326089 CTTAATAATC
* *
84326099 AACCACGCATACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
84326129 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
84326158 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
84326178 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:84328741 original size:39 final size:40
Alignment explanation
Indices: 84328646--84328907 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
84328636 TTGAATGATG
*
84328646 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
84328684 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
84328725 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
84328764 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
84328803 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
84328842 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
84328881 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
84328908 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:84336672 original size:29 final size:28
Alignment explanation
Indices: 84336636--84336713 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
84336626 TCATGAGATT
84336636 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
84336666 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
84336693 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
84336714 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:84336931 original size:174 final size:174
Alignment explanation
Indices: 84336666--84336993 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
84336656 AAATTGTACA
84336666 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
84336731 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCAAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCAAGTCAA
84336796 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
84336840 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
84336905 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCAAGTCAA
84336970 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
84336994 ACCTTGAGTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCAAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:84340999 original size:30 final size:30
Alignment explanation
Indices: 84340963--84341022 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
84340953 TGTATGTAAA
84340963 CCTCATATCATTAGCTTCATACATGAAAGG
1 CCTCATATCATTAGCTTCATACATGAAAGG
84340993 CCTCATATCATTAGCTTCATACATGAAAGG
1 CCTCATATCATTAGCTTCATACATGAAAGG
84341023 TTATTTCTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.30
Consensus pattern (30 bp):
CCTCATATCATTAGCTTCATACATGAAAGG
Found at i:84341296 original size:163 final size:163
Alignment explanation
Indices: 84341110--84341438 Score: 658
Period size: 163 Copynumber: 2.0 Consensus size: 163
84341100 CCAATTGATA
84341110 ACAACACATCACATGTAAATAAAATCATGCATAGATTCGTAGGTCATAGCCTACTTCAATTAAGC
1 ACAACACATCACATGTAAATAAAATCATGCATAGATTCGTAGGTCATAGCCTACTTCAATTAAGC
84341175 CAATTTTCATGGCCATGTACAAAGAAATAAACATATTTTTACATGCCTTCATTTGGCAAAGCAAA
66 CAATTTTCATGGCCATGTACAAAGAAATAAACATATTTTTACATGCCTTCATTTGGCAAAGCAAA
84341240 TGACACATATAACAAAATACTCAAAAATCCTAT
131 TGACACATATAACAAAATACTCAAAAATCCTAT
84341273 ACAACACATCACATGTAAATAAAATCATGCATAGATTCGTAGGTCATAGCCTACTTCAATTAAGC
1 ACAACACATCACATGTAAATAAAATCATGCATAGATTCGTAGGTCATAGCCTACTTCAATTAAGC
84341338 CAATTTTCATGGCCATGTACAAAGAAATAAACATATTTTTACATGCCTTCATTTGGCAAAGCAAA
66 CAATTTTCATGGCCATGTACAAAGAAATAAACATATTTTTACATGCCTTCATTTGGCAAAGCAAA
84341403 TGACACATATAACAAAATACTCAAAAATCCTAT
131 TGACACATATAACAAAATACTCAAAAATCCTAT
84341436 ACA
1 ACA
84341439 TGCCATTATA
Statistics
Matches: 166, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
163 166 1.00
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.27
Consensus pattern (163 bp):
ACAACACATCACATGTAAATAAAATCATGCATAGATTCGTAGGTCATAGCCTACTTCAATTAAGC
CAATTTTCATGGCCATGTACAAAGAAATAAACATATTTTTACATGCCTTCATTTGGCAAAGCAAA
TGACACATATAACAAAATACTCAAAAATCCTAT
Found at i:84341459 original size:37 final size:37
Alignment explanation
Indices: 84341409--84341482 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
84341399 CAAATGACAC
84341409 ATATAACAAAATACTCAAAAATCCTATACATGCCATT
1 ATATAACAAAATACTCAAAAATCCTATACATGCCATT
84341446 ATATAACAAAATACTCAAAAATCCTATACATGCCATT
1 ATATAACAAAATACTCAAAAATCCTATACATGCCATT
84341483 GAACAAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.49, C:0.22, G:0.03, T:0.27
Consensus pattern (37 bp):
ATATAACAAAATACTCAAAAATCCTATACATGCCATT
Found at i:84347997 original size:43 final size:43
Alignment explanation
Indices: 84347844--84347998 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 43
84347834 TGTTATCATC
* * *
84347844 TAAGACCACGTCTGGGACTTTGGCATCGACT-TATGATTTACGTG
1 TAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTACATG
* * * *
84347888 TAAGACCACGTCTGGGATGTTAGCATC-ATACTTGATTTCATG
1 TAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACATG
* * *
84347930 TAAGACC-CTATCTTGGACGGTGGCATCGATATTTGATTACATG
1 TAAGACCAC-GTCTGGGACGTTGGCATCGATATTTGATTACATG
* *
84347973 TAAGACCACGTCTGAGACATTGGCAT
1 TAAGACCACGTCTGGGACGTTGGCAT
84347999 TGTAGGAGCT
Statistics
Matches: 88, Mismatches: 19, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
41 1 0.01
42 26 0.30
43 36 0.41
44 25 0.28
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (43 bp):
TAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACATG
Found at i:84350114 original size:13 final size:14
Alignment explanation
Indices: 84350098--84350133 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
84350088 CAATCTCATA
84350098 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
84350111 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
84350124 TCTC-ATTTCA
1 TCTCAATTTCA
84350134 TTCCAATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:84350123 original size:18 final size:19
Alignment explanation
Indices: 84350085--84350125 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
84350075 TGGTTCATGT
84350085 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
84350104 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
84350122 TTTC
1 TTTC
84350126 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:84350387 original size:15 final size:15
Alignment explanation
Indices: 84350362--84350419 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
84350352 TCATATATAT
84350362 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
84350378 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
84350393 AATAATTTCAATCAA
1 TATAAATTCAATCAA
84350408 TATAAATTCAAT
1 TATAAATTCAAT
84350420 AAAACAGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:84350404 original size:30 final size:28
Alignment explanation
Indices: 84350365--84350423 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 28
84350355 TATATATTAT
84350365 ATAATTCAATCAATATAAATTCAATCAAA
1 ATAATTCAATCAATATAAATTCAAT-AAA
84350394 ATAATTTCAATCAATATAAATTCAATAAA
1 ATAA-TTCAATCAATATAAATTCAATAAA
84350423 A
1 A
84350424 CAGATATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 8 0.28
30 21 0.72
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (28 bp):
ATAATTCAATCAATATAAATTCAATAAA
Found at i:84369174 original size:9 final size:9
Alignment explanation
Indices: 84369160--84369185 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
84369150 CTAGTAAGAT
84369160 TTTTGAGCC
1 TTTTGAGCC
84369169 TTTTGAGCC
1 TTTTGAGCC
84369178 TTTTGAGC
1 TTTTGAGC
84369186 ATCTATCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.19, G:0.23, T:0.46
Consensus pattern (9 bp):
TTTTGAGCC
Found at i:84373769 original size:21 final size:21
Alignment explanation
Indices: 84373743--84373802 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
84373733 AAACCTGCAT
84373743 TAGAATGGCTAATACTTATCA
1 TAGAATGGCTAATACTTATCA
84373764 TAGAATGG---AT--TTAATCA
1 TAGAATGGCTAATACTT-ATCA
* *
84373781 TATAATGGCTACTACTTATCA
1 TAGAATGGCTAATACTTATCA
84373802 T
1 T
84373803 CTGCAAACCA
Statistics
Matches: 31, Mismatches: 2, Indels: 12
0.69 0.04 0.27
Matches are distributed among these distances:
16 2 0.06
17 11 0.35
18 2 0.06
20 1 0.03
21 13 0.42
22 2 0.06
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (21 bp):
TAGAATGGCTAATACTTATCA
Found at i:84376228 original size:21 final size:21
Alignment explanation
Indices: 84376177--84376228 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
84376167 CACTATGGTT
* *
84376177 GAAAAGGAAGTTGATGTTGCA
1 GAAAAGGAAGTTGATGCTGAA
* *
84376198 GAAGAGGAAGTTGTTGCTGAA
1 GAAAAGGAAGTTGATGCTGAA
*
84376219 GAAAAAGAAG
1 GAAAAGGAAG
84376229 CTTCAAAAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.42, C:0.04, G:0.35, T:0.19
Consensus pattern (21 bp):
GAAAAGGAAGTTGATGCTGAA
Found at i:84378191 original size:40 final size:40
Alignment explanation
Indices: 84378097--84378241 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
84378087 TACTTGAATG
* *
84378097 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
84378138 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
84378178 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
84378218 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
84378242 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:84379909 original size:28 final size:28
Alignment explanation
Indices: 84379869--84379961 Score: 161
Period size: 28 Copynumber: 3.3 Consensus size: 28
84379859 ATGTACTAGA
84379869 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
84379897 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
84379925 ATACCCCTATGTATGCAAAATGACC-TCT
1 ATACCCCTATGTATGCAAAATTACCAT-T
84379953 ATACCCCTA
1 ATACCCCTA
84379962 GGGTTAATTT
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
27 1 0.02
28 62 0.98
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:84380125 original size:27 final size:27
Alignment explanation
Indices: 84380077--84380156 Score: 108
Period size: 27 Copynumber: 2.9 Consensus size: 27
84380067 CTAGTGGCTA
84380077 TGCCACAAATTATCTGTTCTGGTGGC-C
1 TGCCACAAA-TATCTGTTCTGGTGGCAC
*
84380104 TTGCCACATATATCTGTTCTGGTGGCAC
1 -TGCCACAAATATCTGTTCTGGTGGCAC
84380132 TGCCACAAAATATCTGTATCTGGTG
1 TGCCAC-AAATATCTGT-TCTGGTG
84380157 ACTCTGTCAC
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
27 22 0.47
28 18 0.38
29 7 0.15
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGGTGGCAC
Found at i:84380175 original size:55 final size:56
Alignment explanation
Indices: 84380077--84380181 Score: 135
Period size: 55 Copynumber: 1.9 Consensus size: 56
84380067 CTAGTGGCTA
* *
84380077 TGCCACAAATTATCTGTTCTGGTGGCCTTGCCACATATATCTGT-TCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACCTTGCCACATATATCTGTATCTGGTGGCAC
* *
84380132 TGCCACAAAATATCTGTATCTGGTGA-CTCTGTCACAT-TTTCTGTATCTGG
1 TGCCACAAAATATCTGT-TCTGGTGACCT-TGCCACATATATCTGTATCTGG
84380182 CAGCTATGCT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
55 24 0.56
56 19 0.44
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (56 bp):
TGCCACAAAATATCTGTTCTGGTGACCTTGCCACATATATCTGTATCTGGTGGCAC
Found at i:84380649 original size:18 final size:18
Alignment explanation
Indices: 84380610--84380650 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
84380600 TAATAAGGCC
* *
84380610 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
84380628 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
84380646 TTTTA
1 TTTTA
84380651 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:84387326 original size:37 final size:37
Alignment explanation
Indices: 84387273--84387375 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
84387263 CGAATAGTCC
*
84387273 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
84387310 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
84387347 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
84387376 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:84391476 original size:3 final size:3
Alignment explanation
Indices: 84391468--84391498 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
84391458 TAAAGATGGA
84391468 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
84391499 ATTTGAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:84392630 original size:16 final size:16
Alignment explanation
Indices: 84392609--84392661 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
84392599 GAGTAGAAAG
84392609 AAAATTAGAAAGATAA
1 AAAATTAGAAAGATAA
* *
84392625 AAAATTA-AAGGGGTAA
1 AAAATTAGAA-AGATAA
*
84392641 AAAATTAGAATGATAA
1 AAAATTAGAAAGATAA
*
84392657 TAAAT
1 AAAAT
84392662 AACATAAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 2 0.07
16 26 0.87
17 2 0.07
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.23
Consensus pattern (16 bp):
AAAATTAGAAAGATAA
Found at i:84394143 original size:51 final size:51
Alignment explanation
Indices: 84394081--84394188 Score: 171
Period size: 51 Copynumber: 2.1 Consensus size: 51
84394071 AATATTTCAC
* *
84394081 TCAATACAACTAAATAGAAAGTCCATAATACACTAAAAAAGTTACCTATTCT
1 TCAA-ACAACTAAATAAAAAGTCCATAATACACTAAAAAACTTACCTATTCT
* *
84394133 TCAAACAACTAAATAAAAAGTCCATAATACATTAAAGAACTTACCTATTCT
1 TCAAACAACTAAATAAAAAGTCCATAATACACTAAAAAACTTACCTATTCT
84394184 TCAAA
1 TCAAA
84394189 TGAGGATTGT
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
51 48 0.92
52 4 0.08
ACGTcount: A:0.49, C:0.19, G:0.05, T:0.27
Consensus pattern (51 bp):
TCAAACAACTAAATAAAAAGTCCATAATACACTAAAAAACTTACCTATTCT
Found at i:84402565 original size:16 final size:16
Alignment explanation
Indices: 84402544--84402577 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
84402534 GTGATCTAAA
84402544 CTCATTGAGTTGTGGT
1 CTCATTGAGTTGTGGT
84402560 CTCATTGAGTTGTGGT
1 CTCATTGAGTTGTGGT
84402576 CT
1 CT
84402578 GAGTTCATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.12, C:0.15, G:0.29, T:0.44
Consensus pattern (16 bp):
CTCATTGAGTTGTGGT
Found at i:84412369 original size:20 final size:21
Alignment explanation
Indices: 84412321--84412372 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
84412311 AGTCACTTAA
84412321 CAAAACTTTAATATCTATCAT
1 CAAAACTTTAATATCTATCAT
84412342 CAAAACTTTAATATCTATCAT
1 CAAAACTTTAATATCTATCAT
84412363 C-AAACTTTAA
1 CAAAACTTTAA
84412373 AAATTCATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 9 0.29
21 22 0.71
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.37
Consensus pattern (21 bp):
CAAAACTTTAATATCTATCAT
Found at i:84422632 original size:18 final size:19
Alignment explanation
Indices: 84422605--84422640 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
84422595 GAATGTACTA
84422605 TTCATATACA-CATATATT
1 TTCATATACATCATATATT
*
84422623 TTCATTTACATCATATAT
1 TTCATATACATCATATAT
84422641 AAATTGTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.36, C:0.17, G:0.00, T:0.47
Consensus pattern (19 bp):
TTCATATACATCATATATT
Found at i:84422932 original size:56 final size:56
Alignment explanation
Indices: 84422871--84423118 Score: 399
Period size: 56 Copynumber: 4.4 Consensus size: 56
84422861 TCCCAGACAG
* * * *
84422871 GGTCTTAC-CAACACACATAAATCGGAATCACATATCAATGCCAATGTATTAAATGT
1 GGTCTTACTC-ACACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
*
84422927 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
*
84422983 GGTCTTACTCACACACATATATTGGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
*
84423039 GGTCTTACTCACACACATATATTGGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
* *
84423095 GATCTTACTCCCACACATATATCG
1 GGTCTTACTCACACACATATATCG
84423119 ATGCCATGGT
Statistics
Matches: 181, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
56 180 0.99
57 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:84424043 original size:18 final size:17
Alignment explanation
Indices: 84424013--84424046 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
84424003 ATGCATGATG
*
84424013 AATTTTATTATAACATA
1 AATTTTATAATAACATA
84424030 AATTATTATAATAACAT
1 AATT-TTATAATAACAT
84424047 TTTATTATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTTTATAATAACATA
Found at i:84426030 original size:40 final size:40
Alignment explanation
Indices: 84425968--84426185 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
84425958 AAGCCAAGTA
* * * * *
84425968 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
84426007 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
84426047 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
84426087 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
84426127 CCTTTGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
84426167 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
84426186 TTATCATCCA
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 13 0.08
40 146 0.92
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:84427454 original size:5 final size:5
Alignment explanation
Indices: 84427437--84427477 Score: 55
Period size: 5 Copynumber: 7.8 Consensus size: 5
84427427 CATGAGAGCC
*
84427437 TTTCT TTTTT TTTCTT TTTCT TTCTCT TTTCT TTTCT TTTC
1 TTTCT TTTCT TTTC-T TTTCT TT-TCT TTTCT TTTCT TTTC
84427478 ATCATCATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 22 0.69
6 10 0.31
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTCT
Found at i:84427477 original size:10 final size:10
Alignment explanation
Indices: 84427437--84427477 Score: 55
Period size: 11 Copynumber: 3.9 Consensus size: 10
84427427 CATGAGAGCC
*
84427437 TTTCTTTTTT
1 TTTCTTTTCT
84427447 TTTCTTTTTCT
1 TTTC-TTTTCT
84427458 TTCTCTTTTCT
1 TT-TCTTTTCT
84427469 TTTCTTTTC
1 TTTCTTTTC
84427478 ATCATCATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
10 11 0.39
11 15 0.54
12 2 0.07
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTCTTTTCT
Found at i:84435313 original size:11 final size:10
Alignment explanation
Indices: 84435284--84435324 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
84435274 CATGAGAGCG
*
84435284 TTTCTTTTTT
1 TTTCTTTTTC
84435294 TTTCTTTTTC
1 TTTCTTTTTC
84435304 TTTCTCTTTTC
1 TTTCT-TTTTC
*
84435315 TTTTTTTTTC
1 TTTCTTTTTC
84435325 ATCATCATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 19 0.68
11 9 0.32
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTCTTTTTC
Found at i:84435888 original size:45 final size:45
Alignment explanation
Indices: 84435824--84435997 Score: 194
Period size: 45 Copynumber: 3.9 Consensus size: 45
84435814 TATCGTACGG
* * * * *
84435824 TACTATTCGAGCTTTTGAGCCTAGCAGGCTATGATGCCAGTGAGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
84435869 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATTCCGGTGGGA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
84435914 TACTATTCGGGCCTTCGAGCCTAGAAGGCTATAATGTCGGTGAAA
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
84435959 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTG
1 T-ACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTG
84435998 GATGAATTCG
Statistics
Matches: 112, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
42 9 0.08
43 17 0.15
44 5 0.04
45 80 0.71
46 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:84443606 original size:45 final size:45
Alignment explanation
Indices: 84443542--84443666 Score: 187
Period size: 45 Copynumber: 2.8 Consensus size: 45
84443532 TATCGTATGG
* * *
84443542 TACTATTCGGGCTTTTGAGCCTAGTAGGCTATGATACCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
*
84443587 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
* * *
84443632 TACTACTCAGGCCTTTGAGCCTAGCAGGCTCTAAT
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAAT
84443667 GCTAGTGAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGA
Found at i:84459735 original size:22 final size:22
Alignment explanation
Indices: 84459705--84459750 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
84459695 GAAGTAGGAT
84459705 AGTTCAGTGGATTACCAACTGA
1 AGTTCAGTGGATTACCAACTGA
* *
84459727 AGTTTAGTGGATTACCAATTGA
1 AGTTCAGTGGATTACCAACTGA
84459749 AG
1 AG
84459751 ATCCAAAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (22 bp):
AGTTCAGTGGATTACCAACTGA
Found at i:84460351 original size:35 final size:36
Alignment explanation
Indices: 84460312--84460437 Score: 118
Period size: 35 Copynumber: 3.6 Consensus size: 36
84460302 CCTAAGATCC
*
84460312 AATCCATCTAG-AACACACCAATGCTCGTAAAAACT
1 AATCCATCTAGAAACACACCAATGCTCGTAAAAGCT
* * * *
84460347 AATCC-TTTCGAAACACACCAATGCTCATAAGAGCT
1 AATCCATCTAGAAACACACCAATGCTCGTAAAAGCT
* * * * *
84460382 AATCCCTC-CGAAACACACCAGTGCTGGTAAAAGTT
1 AATCCATCTAGAAACACACCAATGCTCGTAAAAGCT
84460417 AATCCAATC--GAAACACACCAA
1 AATCC-ATCTAGAAACACACCAA
84460438 AACAGAGAGT
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
34 3 0.04
35 69 0.92
36 3 0.04
ACGTcount: A:0.40, C:0.29, G:0.11, T:0.19
Consensus pattern (36 bp):
AATCCATCTAGAAACACACCAATGCTCGTAAAAGCT
Found at i:84461195 original size:16 final size:15
Alignment explanation
Indices: 84461169--84461199 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
84461159 GAGAATGTTT
84461169 AGTTTTTAAAAATTA
1 AGTTTTTAAAAATTA
84461184 AGTTTTTAAAAATTA
1 AGTTTTTAAAAATTA
84461199 A
1 A
84461200 AAATTTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (15 bp):
AGTTTTTAAAAATTA
Found at i:84461483 original size:147 final size:147
Alignment explanation
Indices: 84461218--84461500 Score: 322
Period size: 147 Copynumber: 1.9 Consensus size: 147
84461208 TTTTTTGGTC
* *
84461218 ATTTTAAAGGAAATTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTTAACTACTCCAGAGTAAA
1 ATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTTAACTACTCCAGAATAAA
* ** * * ** *
84461283 AGCTTTAATCTTTAAGAAAATAATTTTTTTTAAAAAAAAGAGAAGTTTAGATTTTG-AAAAATAA
66 AACTTTAATCTTTAAGAAAATAATGATATTT-AAAAAAAGAAAACATTAGATTTTGCAAAAAAAA
84461347 AAAAATATTTTTTAAGTT
130 AAAAATATTTTTTAAGTT
* * *
84461365 ATTTTAAAGGAAAGTTTAAAATTTTAAAACAGAGTTTTGATTTTTTTTAAAACTATTTC-GAAAT
1 ATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTT--AACTACTCCAG-AAT
* * * ***
84461429 AAAAATTTTGATTTTTAAGAAAACTAATGATATTT-CCTAAAGAAAACATT-GATTTTGCAAAAA
63 AAAAACTTTAATCTTTAAGAAAA-TAATGATATTTAAAAAAAGAAAACATTAGATTTTGCAAAAA
84461492 AAAAAAAAT
127 AAAAAAAAT
84461501 CCAGCCACCA
Statistics
Matches: 112, Mismatches: 19, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
147 53 0.47
148 23 0.21
149 28 0.25
150 8 0.07
ACGTcount: A:0.46, C:0.05, G:0.10, T:0.39
Consensus pattern (147 bp):
ATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTTAACTACTCCAGAATAAA
AACTTTAATCTTTAAGAAAATAATGATATTTAAAAAAAGAAAACATTAGATTTTGCAAAAAAAAA
AAAATATTTTTTAAGTT
Found at i:84474325 original size:16 final size:16
Alignment explanation
Indices: 84474300--84474330 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84474290 CCCCAATTTC
*
84474300 ATTCATTCATTCGTTT
1 ATTCACTCATTCGTTT
84474316 ATTCACTCATTCGTT
1 ATTCACTCATTCGTT
84474331 CATTTGTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.23, G:0.06, T:0.52
Consensus pattern (16 bp):
ATTCACTCATTCGTTT
Found at i:84474332 original size:24 final size:24
Alignment explanation
Indices: 84474298--84474344 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
84474288 TGCCCCAATT
84474298 TCATTCATTCATTCGTTTATTCAC
1 TCATTCATTCATTCGTTTATTCAC
* *
84474322 TCATTCGTTCATTTGTTTATTCA
1 TCATTCATTCATTCGTTTATTCA
84474345 GAAGCATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.21, G:0.06, T:0.53
Consensus pattern (24 bp):
TCATTCATTCATTCGTTTATTCAC
Found at i:84476589 original size:32 final size:32
Alignment explanation
Indices: 84476553--84476616 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
84476543 TGGAAGAGGA
*
84476553 AGTACCAAGGCACTACACATCTCAGTAAAGTG
1 AGTACCAAGACACTACACATCTCAGTAAAGTG
84476585 AGTACCAAGACACTACACATCTCAGTAAAGTG
1 AGTACCAAGACACTACACATCTCAGTAAAGTG
84476617 TAAAGCCTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (32 bp):
AGTACCAAGACACTACACATCTCAGTAAAGTG
Found at i:84478341 original size:50 final size:50
Alignment explanation
Indices: 84478282--84478386 Score: 194
Period size: 50 Copynumber: 2.1 Consensus size: 50
84478272 TTACATGACT
*
84478282 AATACTACCTTAATAACAAGCCAATGTCTTTGGCTAAATCATAATATTAC
1 AATACTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
84478332 AATACTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
1 AATACTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
84478382 -ATACT
1 AATACT
84478387 CACATTAAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 5 0.09
50 49 0.91
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (50 bp):
AATACTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
Found at i:84486460 original size:34 final size:39
Alignment explanation
Indices: 84486378--84486460 Score: 95
Period size: 39 Copynumber: 2.3 Consensus size: 39
84486368 TCATTCTGAA
*
84486378 AAAAGAAAAAAAAAGAAATAGGGAAAGCGAATAAGAAAC
1 AAAAGAAAAGAAAAGAAATAGGGAAAGCGAATAAGAAAC
* * *
84486417 AAAAAAAAAGAAAGGAAATA-GG-AAG-GAGTAAG-AAC
1 AAAAGAAAAGAAAAGAAATAGGGAAAGCGAATAAGAAAC
84486452 -AAAGAAAAG
1 AAAAGAAAAG
84486461 TGATTGAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
34 8 0.21
35 3 0.08
36 6 0.15
37 3 0.08
38 2 0.05
39 17 0.44
ACGTcount: A:0.69, C:0.04, G:0.23, T:0.05
Consensus pattern (39 bp):
AAAAGAAAAGAAAAGAAATAGGGAAAGCGAATAAGAAAC
Found at i:84487491 original size:42 final size:42
Alignment explanation
Indices: 84487416--84487667 Score: 369
Period size: 42 Copynumber: 6.0 Consensus size: 42
84487406 GAGAACATTT
* *
84487416 ATTGCATTTAGAGGCCTAGGTGTGTAGGTCCATTTACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
* * *
84487458 ATTGTATTTAGAGGCCCAGATGTGGAGGCCCATTTACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
* *
84487500 ATTGCTTTTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
* *
84487542 ATTGCATTTAGAGGCCCAGGTGTTGAGGCCCATTTACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
* * *
84487584 ATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTGACTTTTT
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
* * *
84487626 ATTGCATTTAGAGACCTAAGTGTGGAGGTCCATTTACTTTTC
1 ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
84487668 TAGTTTACTT
Statistics
Matches: 187, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 187 1.00
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (42 bp):
ATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
Found at i:84495620 original size:56 final size:55
Alignment explanation
Indices: 84495561--84495757 Score: 220
Period size: 56 Copynumber: 3.7 Consensus size: 55
84495551 CAGATAGGGT
* *
84495561 CTTACTCGTACACATATATCGGAGTCATATATCGATGCCAACGTATTAAACGTGGT
1 CTTACTCGTACACATATATCGGAGTCACATATCGATGCCAACGTATTAAA-GTGGA
* *
84495617 CTTACTCGCACACATTTATCGGAGTCACATATCGATG--AACG---T--A---GA
1 CTTACTCGTACACATATATCGGAGTCACATATCGATGCCAACGTATTAAAGTGGA
* *
84495662 CTTACTTGTACATATATATCGGAGTCACATATCGATGCCAACGTATTAAAGGTGGA
1 CTTACTCGTACACATATATCGGAGTCACATATCGATGCCAACGTATTAAA-GTGGA
84495718 CTTACTCG--CACATATATACTGGAGTCACATATCGATGCCA
1 CTTACTCGTACACATATAT-C-GGAGTCACATATCGATGCCA
84495758 CATATACTTC
Statistics
Matches: 118, Mismatches: 10, Indels: 26
0.77 0.06 0.17
Matches are distributed among these distances:
45 34 0.29
47 4 0.03
49 1 0.01
50 1 0.01
51 1 0.01
52 1 0.01
54 12 0.10
55 1 0.01
56 63 0.53
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (55 bp):
CTTACTCGTACACATATATCGGAGTCACATATCGATGCCAACGTATTAAAGTGGA
Found at i:84495698 original size:101 final size:101
Alignment explanation
Indices: 84495561--84495754 Score: 309
Period size: 101 Copynumber: 1.9 Consensus size: 101
84495551 CAGATAGGGT
* *
84495561 CTTACTCGTACACATATATCGGAGTCATATATCGATGCCAACGTATTAAACGTGGTCTTACTCGC
1 CTTACTCGTACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGC
*
84495626 ACACATTTA-TCGGAGTCACATATCGATGAACGTAGA
66 ACACATATACT-GGAGTCACATATCGATGAACGTAGA
* * *
84495662 CTTACTTGTACATATATATCGGAGTCACATATCGATGCCAACGTATTAAAGGTGGACTTACTCGC
1 CTTACTCGTACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGC
*
84495727 ACATATATACTGGAGTCACATATCGATG
66 ACACATATACTGGAGTCACATATCGATG
84495755 CCACATATAC
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
101 84 0.99
102 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (101 bp):
CTTACTCGTACACATATATCGGAGTCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGC
ACACATATACTGGAGTCACATATCGATGAACGTAGA
Found at i:84497726 original size:23 final size:23
Alignment explanation
Indices: 84497696--84497742 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
84497686 AGTTTTCCAA
*
84497696 TTCATCACAGCAAAAACTTTACT
1 TTCATCACAACAAAAACTTTACT
*
84497719 TTCATCACAACAGAAACTTTACT
1 TTCATCACAACAAAAACTTTACT
84497742 T
1 T
84497743 GGAACAACTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32
Consensus pattern (23 bp):
TTCATCACAACAAAAACTTTACT
Found at i:84499062 original size:28 final size:29
Alignment explanation
Indices: 84498983--84499132 Score: 118
Period size: 28 Copynumber: 5.3 Consensus size: 29
84498973 ACCCCTACAT
*
84498983 ACATGCATATGG-CC-TTCAGGCCCAA-TC
1 ACATTCATATGGCCCATT-AGGCCCAATTC
* ** *
84499010 TA-ATTTATATGGCCCATCCGACCCAATTC
1 -ACATTCATATGGCCCATTAGGCCCAATTC
* *
84499039 ACGTTCATATGGCCTATT-GGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAATTC
84499067 ACATTCATATGGCCCATTAGGCCCAA-TC
1 ACATTCATATGGCCCATTAGGCCCAATTC
* * * *
84499095 CCATTTATATGGCCCATCCA-GCCCAAATC
1 ACATTCATATGGCCCAT-TAGGCCCAATTC
84499124 ACATT-ATAT
1 ACATTCATAT
84499133 TCATGCTCAC
Statistics
Matches: 99, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
27 8 0.08
28 62 0.63
29 29 0.29
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAATTC
Found at i:84503151 original size:27 final size:27
Alignment explanation
Indices: 84503113--84503258 Score: 168
Period size: 27 Copynumber: 5.4 Consensus size: 27
84503103 TGAATAAGTT
*
84503113 GTAGAATTACCGAAATACCCCTGAAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
84503140 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
84503167 ATAGAATTACCGAAATACCCTTGTACG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
84503194 GTAGAAATACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
84503221 GTAAAATTA-CAAAGATACCCTTGTGGG
1 GTAGAATTACCGAA-ATACCCCTGTAGG
*
84503248 GTAAAATTACC
1 GTAGAATTACC
84503259 ATTTTGCCCT
Statistics
Matches: 102, Mismatches: 15, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.02
27 99 0.97
28 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:84503954 original size:27 final size:26
Alignment explanation
Indices: 84503910--84503960 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
84503900 CTCGCTGCAA
*
84503910 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
84503937 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
84503961 AGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:84504029 original size:26 final size:27
Alignment explanation
Indices: 84504000--84504059 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
84503990 CCACATATAT
*
84504000 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
84504026 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
84504053 ATATCTG
1 ATATCTG
84504060 GCAGCCTCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:84507136 original size:34 final size:35
Alignment explanation
Indices: 84507098--84507219 Score: 183
Period size: 35 Copynumber: 3.5 Consensus size: 35
84507088 CCTAAAATCC
84507098 AATCCATCCGAAACACACCAATGCTC-TAAGAGCT
1 AATCCATCCGAAACACACCAATGCTCATAAGAGCT
* *
84507132 AATCCCTCTGAAACACACCAATGCTCATAAGAGCT
1 AATCCATCCGAAACACACCAATGCTCATAAGAGCT
* *
84507167 AATCCCTCCGAAACACACCAATGCTCATAAAAGCT
1 AATCCATCCGAAACACACCAATGCTCATAAGAGCT
* *
84507202 AATCCAACCAAAACACAC
1 AATCCATCCGAAACACAC
84507220 AAAAATAGAG
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
34 24 0.30
35 56 0.70
ACGTcount: A:0.41, C:0.34, G:0.09, T:0.16
Consensus pattern (35 bp):
AATCCATCCGAAACACACCAATGCTCATAAGAGCT
Found at i:84507170 original size:35 final size:35
Alignment explanation
Indices: 84507098--84507206 Score: 184
Period size: 35 Copynumber: 3.1 Consensus size: 35
84507088 CCTAAAATCC
*
84507098 AATCCATCCGAAACACACCAATGCTC-TAAGAGCT
1 AATCCCTCCGAAACACACCAATGCTCATAAGAGCT
*
84507132 AATCCCTCTGAAACACACCAATGCTCATAAGAGCT
1 AATCCCTCCGAAACACACCAATGCTCATAAGAGCT
*
84507167 AATCCCTCCGAAACACACCAATGCTCATAAAAGCT
1 AATCCCTCCGAAACACACCAATGCTCATAAGAGCT
84507202 AATCC
1 AATCC
84507207 AACCAAAACA
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
34 24 0.34
35 46 0.66
ACGTcount: A:0.39, C:0.33, G:0.10, T:0.18
Consensus pattern (35 bp):
AATCCCTCCGAAACACACCAATGCTCATAAGAGCT
Found at i:84507216 original size:35 final size:35
Alignment explanation
Indices: 84507073--84507219 Score: 179
Period size: 35 Copynumber: 4.2 Consensus size: 35
84507063 CAATCCAACC
* * * *
84507073 AACACCCCAGATGCTCCTAAAATCCAATCCATCCGA
1 AACACACCA-ATGCTCATAAAAGCTAATCCATCCGA
* * *
84507109 AACACACCAATGCTC-TAAGAGCTAATCCCTCTGA
1 AACACACCAATGCTCATAAAAGCTAATCCATCCGA
* *
84507143 AACACACCAATGCTCATAAGAGCTAATCCCTCCGA
1 AACACACCAATGCTCATAAAAGCTAATCCATCCGA
* *
84507178 AACACACCAATGCTCATAAAAGCTAATCCAACCAA
1 AACACACCAATGCTCATAAAAGCTAATCCATCCGA
84507213 AACACAC
1 AACACAC
84507220 AAAAATAGAG
Statistics
Matches: 99, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
34 29 0.29
35 62 0.63
36 8 0.08
ACGTcount: A:0.40, C:0.35, G:0.09, T:0.16
Consensus pattern (35 bp):
AACACACCAATGCTCATAAAAGCTAATCCATCCGA
Found at i:84509108 original size:25 final size:24
Alignment explanation
Indices: 84509038--84509115 Score: 86
Period size: 25 Copynumber: 3.2 Consensus size: 24
84509028 GGCCTATCCT
* *
84509038 CTTTTAAT-AACTGGGGCAAAACC
1 CTTTTGATAAACTGGGGCAAAGCC
*
84509061 CTTCTTGATAAATTGGGGCAAAGCC
1 CTT-TTGATAAACTGGGGCAAAGCC
* *
84509086 CTTTTCGGTAAACTGGGGCAAAGCT
1 CTTTT-GATAAACTGGGGCAAAGCC
84509111 CTTTT
1 CTTTT
84509116 AGCACTTCCT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
23 3 0.07
24 6 0.13
25 37 0.80
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.31
Consensus pattern (24 bp):
CTTTTGATAAACTGGGGCAAAGCC
Found at i:84509175 original size:10 final size:10
Alignment explanation
Indices: 84509162--84509200 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
84509152 ATATGTGAAT
84509162 ATATCATGGC
1 ATATCATGGC
84509172 ATATCATGTGC
1 ATATCATG-GC
*
84509183 ACATCATGGC
1 ATATCATGGC
84509193 ATATCATG
1 ATATCATG
84509201 TACAAAAGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (10 bp):
ATATCATGGC
Found at i:84509269 original size:25 final size:26
Alignment explanation
Indices: 84509241--84509292 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
84509231 ATAACATAAC
* *
84509241 CCTACGGGT-ATAATGGTCATTTTCA
1 CCTACGGGTAAAAAAGGTCATTTTCA
*
84509266 CCTAGGGGTAAAAAAGGTCATTTTCA
1 CCTACGGGTAAAAAAGGTCATTTTCA
84509292 C
1 C
84509293 ATTATAAGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
CCTACGGGTAAAAAAGGTCATTTTCA
Found at i:84522515 original size:41 final size:39
Alignment explanation
Indices: 84522388--84522526 Score: 134
Period size: 40 Copynumber: 3.4 Consensus size: 39
84522378 CTCGCACAAG
* * * * * * *
84522388 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTC-GGACTTAGCCCGGATGTAGTCGCTAGCACAAAA
* * *
84522428 CCCTTCGGGACTTAGCCCGGATTTAGTCGCTAGCACAAAT
1 GCCTTC-GGACTTAGCCCGGATGTAGTCGCTAGCACAAAA
*
84522468 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGA-CTTAGCCCGGATGTAGTCGC-TAGCACAAAA
84522509 GCCTTCGGGACTTAGCCC
1 GCCTTC-GGACTTAGCCC
84522527 AGATATCATT
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.04
40 56 0.67
41 22 0.26
42 3 0.04
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (39 bp):
GCCTTCGGACTTAGCCCGGATGTAGTCGCTAGCACAAAA
Found at i:84525580 original size:85 final size:85
Alignment explanation
Indices: 84525437--84525599 Score: 195
Period size: 85 Copynumber: 1.9 Consensus size: 85
84525427 CATAAACAAG
* * * *
84525437 TACAATACCGACGTCCCGGACGTGGTCTTACATGTAACTCAATATTGATGCCTCTGTCCCAAACA
1 TACAATACCGACGTCCCAGACATGGTCTTACACGTAACTCAATATTGAGGCCTCTGTCCCAAACA
* *
84525502 GGGTCTTACACGAAATTAGA
66 CGATCTTACACGAAATTAGA
* * * * *
84525522 TACAATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTC-A-ATTGAGGCCTGTGTCCCAGA
1 TACAATACCGACGTCCCAGACATGGTCTTACACGT-AA-CTCAATATTGAGGCCTCTGTCCCAAA
84525585 CACGATCTTACACGA
64 CACGATCTTACACGA
84525600 TGTCTCAGAC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
85 59 0.91
86 3 0.05
87 3 0.05
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (85 bp):
TACAATACCGACGTCCCAGACATGGTCTTACACGTAACTCAATATTGAGGCCTCTGTCCCAAACA
CGATCTTACACGAAATTAGA
Found at i:84527685 original size:29 final size:29
Alignment explanation
Indices: 84527638--84527738 Score: 114
Period size: 29 Copynumber: 3.4 Consensus size: 29
84527628 ACCGGTACAT
*
84527638 AGTACCTGATAAATATAACACTAGCACAA
1 AGTACCTGATAAATGTAACACTAGCACAA
* * *
84527667 AGTGCCTGATAATTGTAACACTAGTACAA
1 AGTACCTGATAAATGTAACACTAGCACAA
* *
84527696 AGTACCTGATAACTGTAATCACCAGCA-AA
1 AGTACCTGATAAATGTAA-CACTAGCACAA
*
84527725 TAGTATCTGATAAA
1 -AGTACCTGATAAA
84527739 CCCTAATGAC
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
29 43 0.72
30 17 0.28
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.25
Consensus pattern (29 bp):
AGTACCTGATAAATGTAACACTAGCACAA
Found at i:84540053 original size:160 final size:160
Alignment explanation
Indices: 84539789--84540108 Score: 604
Period size: 160 Copynumber: 2.0 Consensus size: 160
84539779 TTCGACGAGT
*
84539789 TTGATGTTATTCTTGGTTTGGATTGGTTAACCGCGCATGATGCGGTTGTGAATTGCAAAAGCAAG
1 TTGATGTTATTCTTGGTTTGGATTGGTTAACCGCGCATGATGCGGTTGTAAATTGCAAAAGCAAG
*
84539854 ACTATCGATTTGAGGTGCGCAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTTAAGGGGGTT
66 ACTATCGACTTGAGGTGCGCAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTTAAGGGGGTT
* *
84539919 GCCAGTTGTAATATCAGTAATGTTGGCCCA
131 GCCAGCTGTAATATCAGCAATGTTGGCCCA
84539949 TTGATGTTATTCTTGGTTTGGATTGGTTAACCGCGCATGATGCGGTTGTAAATTGCAAAAGCAAG
1 TTGATGTTATTCTTGGTTTGGATTGGTTAACCGCGCATGATGCGGTTGTAAATTGCAAAAGCAAG
84540014 ACTATCGACTTGAGGTGCGCAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTTAAGGGGGTT
66 ACTATCGACTTGAGGTGCGCAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTTAAGGGGGTT
84540079 GCCAGCTGTAATATCAGCAATGTTGGCCCA
131 GCCAGCTGTAATATCAGCAATGTTGGCCCA
84540109 GGTGCGCAAA
Statistics
Matches: 156, Mismatches: 4, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
160 156 1.00
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (160 bp):
TTGATGTTATTCTTGGTTTGGATTGGTTAACCGCGCATGATGCGGTTGTAAATTGCAAAAGCAAG
ACTATCGACTTGAGGTGCGCAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTTAAGGGGGTT
GCCAGCTGTAATATCAGCAATGTTGGCCCA
Found at i:84540163 original size:82 final size:82
Alignment explanation
Indices: 84540026--84540190 Score: 312
Period size: 82 Copynumber: 2.0 Consensus size: 82
84540016 TATCGACTTG
84540026 AGGTGCGCAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTTAAGGGGGTTGCCAGCTGTAAT
1 AGGTGCGCAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTTAAGGGGGTTGCCAGCTGTAAT
84540091 ATCAGCAATGTTGGCCC
66 ATCAGCAATGTTGGCCC
*
84540108 AGGTGCGCAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTTAAGGGGGTTGCCAGTTGTAAT
1 AGGTGCGCAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTTAAGGGGGTTGCCAGCTGTAAT
*
84540173 ATCAGTAATGTTGGCCC
66 ATCAGCAATGTTGGCCC
84540190 A
1 A
84540191 TAAATATGTA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 81 1.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (82 bp):
AGGTGCGCAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTTAAGGGGGTTGCCAGCTGTAAT
ATCAGCAATGTTGGCCC
Found at i:84544979 original size:27 final size:27
Alignment explanation
Indices: 84544944--84545122 Score: 166
Period size: 27 Copynumber: 6.6 Consensus size: 27
84544934 TTAAATTGTA
84544944 TAGCACTAAGTGTGCGATATGACTATG
1 TAGCACTAAGTGTGCGATATGACTATG
* * * *
84544971 TTGCACTAAGTGTGGGAAATGAATATG
1 TAGCACTAAGTGTGCGATATGACTATG
*
84544998 -ATGCACTAAGTGTGCGA-ATTGACCATG
1 TA-GCACTAAGTGTGCGATA-TGACTATG
** *
84545025 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TATGACTATG
* * *
84545053 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATATGACTATG
* * *
84545080 TGGCACTAAGTGTGCGAGT-TGATTATA
1 TAGCACTAAGTGTGCGA-TATGACTATG
*
84545107 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
84545123 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
26 1 0.01
27 102 0.81
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATATGACTATG
Found at i:84545060 original size:82 final size:81
Alignment explanation
Indices: 84544946--84545101 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
84544936 AAATTGTATA
* * *
84544946 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGGGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
84545010 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
84545027 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
84545092 TGCGAGTTGA
65 TGCGAATTGA
84545102 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 16 0.25
82 49 0.75
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:84545113 original size:82 final size:81
Alignment explanation
Indices: 84544942--84545122 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
84544932 GATTAAATTG
* * *
84544942 TATAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGGGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
84545007 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** * ** *
84545023 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TATAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
84545087 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
84545105 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
84545123 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 17 0.21
82 64 0.79
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:84549238 original size:21 final size:21
Alignment explanation
Indices: 84549186--84549231 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
84549176 GATAAATAAC
*
84549186 ATTAAATTACTTAAAATGACT
1 ATTAAATTACTTAAAATGACA
84549207 ATTAAATTACTTAAAATGACA
1 ATTAAATTACTTAAAATGACA
84549228 ATTA
1 ATTA
84549232 TGTTACTACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (21 bp):
ATTAAATTACTTAAAATGACA
Found at i:84552430 original size:31 final size:31
Alignment explanation
Indices: 84552392--84552482 Score: 105
Period size: 31 Copynumber: 3.0 Consensus size: 31
84552382 TTTAGATTTT
* *
84552392 TGGGCCCACATGCCAGTGTGGCTTGCCTGTG
1 TGGGCCCACATGCCAGTGTGGCATGCCCGTG
* *
84552423 TGGGCCCATACGCCCA-TGTGGCATGCCCGTG
1 TGGGCCCACATG-CCAGTGTGGCATGCCCGTG
* *
84552454 -GCGCCCACATGCCCGTGTGGCATGCCCGT
1 TGGGCCCACATGCCAGTGTGGCATGCCCGT
84552483 AGCGCCCACA
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 2 0.04
30 22 0.44
31 23 0.46
32 3 0.06
ACGTcount: A:0.11, C:0.35, G:0.33, T:0.21
Consensus pattern (31 bp):
TGGGCCCACATGCCAGTGTGGCATGCCCGTG
Found at i:84552473 original size:30 final size:30
Alignment explanation
Indices: 84552395--84552497 Score: 116
Period size: 30 Copynumber: 3.4 Consensus size: 30
84552385 AGATTTTTGG
* * * * *
84552395 GCCCACATGCCAGTGTGGCTTGCCTGTGTGG
1 GCCCACACGCCCGTGTGGCATGCCCGTG-GC
* *
84552426 GCCCATACGCCCATGTGGCATGCCCGTGGC
1 GCCCACACGCCCGTGTGGCATGCCCGTGGC
* *
84552456 GCCCACATGCCCGTGTGGCATGCCCGTAGC
1 GCCCACACGCCCGTGTGGCATGCCCGTGGC
84552486 GCCCACACGCCC
1 GCCCACACGCCC
84552498 AATTCGGCCT
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
30 38 0.63
31 22 0.37
ACGTcount: A:0.13, C:0.40, G:0.30, T:0.17
Consensus pattern (30 bp):
GCCCACACGCCCGTGTGGCATGCCCGTGGC
Found at i:84558522 original size:27 final size:27
Alignment explanation
Indices: 84558492--84558596 Score: 88
Period size: 27 Copynumber: 3.9 Consensus size: 27
84558482 TGTTCCTTTA
*
84558492 CATAAATCGCCACAAAGGCTTTCATTT
1 CATAAATTGCCACAAAGGCTTTCATTT
* * * * *
84558519 CATAGATTGTCACAAAGACTTCCATGT
1 CATAAATTGCCACAAAGGCTTTCATTT
*
84558546 CA-AAGGTTGCCACAAAGGC-TTCAATTT
1 CATAA-ATTGCCACAAAGGCTTTC-ATTT
* * *
84558573 CATAGATTGTCACAAAGGTTTTCA
1 CATAAATTGCCACAAAGGCTTTCA
84558597 CCAATGTGTT
Statistics
Matches: 58, Mismatches: 16, Indels: 8
0.71 0.20 0.10
Matches are distributed among these distances:
26 3 0.05
27 51 0.88
28 4 0.07
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (27 bp):
CATAAATTGCCACAAAGGCTTTCATTT
Found at i:84562227 original size:41 final size:41
Alignment explanation
Indices: 84562169--84562328 Score: 293
Period size: 41 Copynumber: 3.9 Consensus size: 41
84562159 ATTACATTTG
*
84562169 GCACTTAGTGTGAGAGATTATAATAGCTTCGGCTATGTAAT
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
* *
84562210 GCACTTAGTGTGCGAGATTATAATAGCTTTGGCTACGTAAT
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
84562251 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
84562292 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATG
1 GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATG
84562329 CTTTGGCACT
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 114 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (41 bp):
GCACTTAGTGTGCGAGATTATAATAGCTTCGGCTATGTAAT
Found at i:84563395 original size:12 final size:12
Alignment explanation
Indices: 84563380--84563409 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
84563370 GGCACATGGG
84563380 CGTGTGGCCAAC
1 CGTGTGGCCAAC
*
84563392 CGTGTGGCCAAT
1 CGTGTGGCCAAC
84563404 CGTGTG
1 CGTGTG
84563410 ACCCAAGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.27, G:0.37, T:0.23
Consensus pattern (12 bp):
CGTGTGGCCAAC
Found at i:84564342 original size:27 final size:27
Alignment explanation
Indices: 84564269--84564333 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
84564259 TTCTCTTAGT
* * * *
84564269 GTTCACCATACGTACTATTTCTTCAGA
1 GTTCACCATATGTAATATTCCTTCAAA
*
84564296 GTTCGCCATATGTAATATTCCTTCAAA
1 GTTCACCATATGTAATATTCCTTCAAA
84564323 GTTCACCATAT
1 GTTCACCATAT
84564334 TTATCATTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.37
Consensus pattern (27 bp):
GTTCACCATATGTAATATTCCTTCAAA
Found at i:84564542 original size:27 final size:27
Alignment explanation
Indices: 84564432--84564542 Score: 132
Period size: 27 Copynumber: 4.1 Consensus size: 27
84564422 TGTTCCTTTC
* * *
84564432 CATAGATTGCCATAAAAGCTTTTATTT
1 CATAGATTGCCACAAAGGCTTCTATTT
* * * *
84564459 CAAAGATTTCCACAAAGACTTCTATGT
1 CATAGATTGCCACAAAGGCTTCTATTT
* * *
84564486 CATAAATTGCCACAAAGCCTTCCATTT
1 CATAGATTGCCACAAAGGCTTCTATTT
84564513 CATAGATTGCCACAAAGGCTTCTATTT
1 CATAGATTGCCACAAAGGCTTCTATTT
84564540 CAT
1 CAT
84564543 CGGCGTGCTC
Statistics
Matches: 68, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33
Consensus pattern (27 bp):
CATAGATTGCCACAAAGGCTTCTATTT
Found at i:84566910 original size:66 final size:65
Alignment explanation
Indices: 84566733--84566911 Score: 187
Period size: 66 Copynumber: 2.7 Consensus size: 65
84566723 GTTCAGGAAC
* * * * * * *
84566733 TTGAGAAGACCAAATATCTCGTTTAGGGGCTTGGGAAGACTCAATATCTCATTTAAGATCTTGGG
1 TTGAGAAGACCTAATATCTCGTTTAGGAGCTTGGGAAGA-TCGATATCGCATTCAAGAGCTTGAG
84566798 A
65 A
* * * * *
84566799 TTGAGAAGACATGATATCTCGTTTAGGAGCTTCGAAAGCCTCGATATCGCATTCAAGAGCTTGAG
1 TTGAGAAGACCTAATATCTCGTTTAGGAGCTTGGGAAG-ATCGATATCGCATTCAAGAGCTTGAG
84566864 A
65 A
** * *
84566865 TTGAGAAGACCTAATATCTTATTCAGGATCTTGGGAAGATACGATAT
1 TTGAGAAGACCTAATATCTCGTTTAGGAGCTTGGGAAGAT-CGATAT
84566912 TTGATTTTTT
Statistics
Matches: 90, Mismatches: 21, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
65 1 0.01
66 89 0.99
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (65 bp):
TTGAGAAGACCTAATATCTCGTTTAGGAGCTTGGGAAGATCGATATCGCATTCAAGAGCTTGAGA
Found at i:84582613 original size:57 final size:56
Alignment explanation
Indices: 84582526--84582644 Score: 179
Period size: 57 Copynumber: 2.1 Consensus size: 56
84582516 AATAGAGAAT
*
84582526 ATGAAACATTTGGAAATGATTATGATTTTCTCCAAAATG-AAAATG-AAAATGTATAA
1 ATGAAACATTTGGAAATGAATATGATTTTCTCCAAAATGAAAAATGAAAAATG-A-AA
*
84582582 ATGAAACAATTTGGAAATGAATGTGATTTTCTCCAAAATGAAAAATGAAAAATGAAA
1 ATGAAAC-ATTTGGAAATGAATATGATTTTCTCCAAAATGAAAAATGAAAAATGAAA
84582639 ATGAAA
1 ATGAAA
84582645 ATGACCTGAA
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
56 7 0.12
57 38 0.66
58 7 0.12
59 6 0.10
ACGTcount: A:0.50, C:0.07, G:0.15, T:0.29
Consensus pattern (56 bp):
ATGAAACATTTGGAAATGAATATGATTTTCTCCAAAATGAAAAATGAAAAATGAAA
Found at i:84582628 original size:7 final size:7
Alignment explanation
Indices: 84582616--84582645 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
84582606 GATTTTCTCC
84582616 AAAATGA
1 AAAATGA
84582623 AAAATGA
1 AAAATGA
84582630 AAAATG-
1 AAAATGA
84582636 AAAATGA
1 AAAATGA
84582643 AAA
1 AAA
84582646 TGACCTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (7 bp):
AAAATGA
Found at i:84582639 original size:13 final size:14
Alignment explanation
Indices: 84582616--84582645 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
84582606 GATTTTCTCC
84582616 AAAATGAAAAATGA
1 AAAATGAAAAATGA
84582630 AAAATG-AAAATGA
1 AAAATGAAAAATGA
84582643 AAA
1 AAA
84582646 TGACCTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (14 bp):
AAAATGAAAAATGA
Found at i:84583601 original size:16 final size:16
Alignment explanation
Indices: 84583580--84583610 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84583570 ACAAATGCAT
84583580 AAAAAGGACTAAATTG
1 AAAAAGGACTAAATTG
*
84583596 AAAAAGGAGTAAATT
1 AAAAAGGACTAAATT
84583611 AAGTGATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.03, G:0.19, T:0.19
Consensus pattern (16 bp):
AAAAAGGACTAAATTG
Found at i:84584295 original size:90 final size:89
Alignment explanation
Indices: 84584183--84584394 Score: 237
Period size: 90 Copynumber: 2.4 Consensus size: 89
84584173 AGATCCTGTG
* * * * * * * *
84584183 TAAGACCATATCAGGGATATGGCTTCGGCATCG-TCGAGTGATTTTGTATAAGACCATGTCTGGG
1 TAAGACCATGTCTGGGACATGGCTTCGGCACCGATCGA--AACTTCGTATAAGACCATATCTGGG
84584247 ACATGGCATCGATATGAGGCCCCATA
64 ACATGGCATCGATATGAGGCCCCATA
* *
84584273 TAAGACCATGTCTGGGACATGGCATCGACACCGATTCGAAACTTCGTATAAGACCATATCTGGGA
1 TAAGACCATGTCTGGGACATGGCTTCGGCACCGA-TCGAAACTTCGTATAAGACCATATCTGGGA
* * * ** *
84584338 TATGGCATCGATGTGTGGTTCCATG
65 CATGGCATCGATATGAGGCCCCATA
*
84584363 TAAGACCATGTCTGGGACATGGCTTTGGCACC
1 TAAGACCATGTCTGGGACATGGCTTCGGCACC
84584395 CTATTTGGTG
Statistics
Matches: 101, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
90 97 0.96
92 4 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (89 bp):
TAAGACCATGTCTGGGACATGGCTTCGGCACCGATCGAAACTTCGTATAAGACCATATCTGGGAC
ATGGCATCGATATGAGGCCCCATA
Found at i:84584385 original size:42 final size:42
Alignment explanation
Indices: 84584229--84584385 Score: 138
Period size: 42 Copynumber: 3.6 Consensus size: 42
84584219 AGTGATTTTG
* * **
84584229 TATAAGACCATGTCTGGGACATGGCATCGATATGAGGCCCCA
1 TATAAGACCATGTCTGGGACATGGCATCGATGTGTGGTTCCA
* * *
84584271 TATAAGACCATGTCTGGGACATGGCATCGACACCGAT-TCGAAACTT-CG
1 TATAAGACCATGTCTGGGACATGGCATCG--A-TG-TGT-G---GTTCCA
* *
84584319 TATAAGACCATATCTGGGATATGGCATCGATGTGTGGTTCCA
1 TATAAGACCATGTCTGGGACATGGCATCGATGTGTGGTTCCA
*
84584361 TGTAAGACCATGTCTGGGACATGGC
1 TATAAGACCATGTCTGGGACATGGC
84584386 TTTGGCACCC
Statistics
Matches: 90, Mismatches: 15, Indels: 20
0.72 0.12 0.16
Matches are distributed among these distances:
41 2 0.02
42 52 0.58
44 3 0.03
45 2 0.02
46 3 0.03
48 28 0.31
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (42 bp):
TATAAGACCATGTCTGGGACATGGCATCGATGTGTGGTTCCA
Found at i:84591371 original size:51 final size:51
Alignment explanation
Indices: 84591290--84591392 Score: 188
Period size: 51 Copynumber: 2.0 Consensus size: 51
84591280 TTGAAGCATG
* *
84591290 ATCTTTCCATTTCTAGCCATACTTTGAGCTAGGGTTCATGTTCAAAAACTT
1 ATCTATCCATTTCTAGCCATACTTTAAGCTAGGGTTCATGTTCAAAAACTT
84591341 ATCTATCCATTTCTAGCCATACTTTAAGCTAGGGTTCATGTTCAAAAACTT
1 ATCTATCCATTTCTAGCCATACTTTAAGCTAGGGTTCATGTTCAAAAACTT
84591392 A
1 A
84591393 ACCATGTGTG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (51 bp):
ATCTATCCATTTCTAGCCATACTTTAAGCTAGGGTTCATGTTCAAAAACTT
Found at i:84591515 original size:18 final size:18
Alignment explanation
Indices: 84591494--84591528 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
84591484 AAAAATGCAT
84591494 AAAAAGGACTAAATTAAA
1 AAAAAGGACTAAATTAAA
*
84591512 AAAAAGGAGTAAATTAA
1 AAAAAGGACTAAATTAA
84591529 GTGATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.14, T:0.17
Consensus pattern (18 bp):
AAAAAGGACTAAATTAAA
Done.