Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 247 of 290
Found at i:85216968 original size:27 final size:27
Alignment explanation
Indices: 85216910--85216999 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
85216900 AGGAAGCGTC
85216910 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
85216938 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
85216965 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
85216994 CTGGTG
1 CTGGTG
85217000 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:85217018 original size:55 final size:56
Alignment explanation
Indices: 85216910--85217024 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
85216900 AGGAAGCGTC
* *
85216910 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
85216965 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
85217021 CTGG
1 CTGG
85217025 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:85218208 original size:33 final size:33
Alignment explanation
Indices: 85218156--85218219 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
85218146 TTGGGCCCAC
* *
85218156 TCTGCTACTGTATAGGGCTAAAGCCCAGACTGT
1 TCTGCTACTGAATAAGGCTAAAGCCCAGACTGT
* **
85218189 TCTGTTACTGAATAAGGCTACGGCCCAGACT
1 TCTGCTACTGAATAAGGCTAAAGCCCAGACT
85218220 ATTTTGCATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (33 bp):
TCTGCTACTGAATAAGGCTAAAGCCCAGACTGT
Found at i:85226797 original size:10 final size:11
Alignment explanation
Indices: 85226772--85226796 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
85226762 CTCACAAAGA
85226772 AAAACAAGGAT
1 AAAACAAGGAT
85226783 AAAACAAGGAT
1 AAAACAAGGAT
85226794 AAA
1 AAA
85226797 CCTGCAAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.08, G:0.16, T:0.08
Consensus pattern (11 bp):
AAAACAAGGAT
Found at i:85227465 original size:10 final size:10
Alignment explanation
Indices: 85227450--85227474 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
85227440 TTTTCTTTTG
85227450 TAACTCTAAC
1 TAACTCTAAC
85227460 TAACTCTAAC
1 TAACTCTAAC
85227470 TAACT
1 TAACT
85227475 GTACAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.32
Consensus pattern (10 bp):
TAACTCTAAC
Found at i:85230902 original size:12 final size:12
Alignment explanation
Indices: 85230885--85230917 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
85230875 TGGCCCGCCC
85230885 ATATTAATTTTT
1 ATATTAATTTTT
85230897 ATATT-ATTTTT
1 ATATTAATTTTT
85230908 ATA-TAATTTT
1 ATATTAATTTT
85230918 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:85234922 original size:40 final size:40
Alignment explanation
Indices: 85234878--85235064 Score: 275
Period size: 40 Copynumber: 4.7 Consensus size: 40
85234868 CCAACCCAAT
* * ** *
85234878 TGCCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* * *
85234918 TGCCTTTGGGACTTAACCCGGAAATAGCAACCATCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
85234958 TGCCTTCAGGACTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
85234998 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
85235038 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGAAATAA
85235065 TCCTCAATTG
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
Found at i:85235787 original size:40 final size:40
Alignment explanation
Indices: 85235743--85235929 Score: 241
Period size: 40 Copynumber: 4.7 Consensus size: 40
85235733 CCAACCCAAT
* * ** *
85235743 TGCCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* *
85235783 TGCCTTCGGGACTTAACCCGGAAATAGCGACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
85235823 TGCCTTCGGGGCTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* ** *
85235863 TGCTTTCATGACTTAACCCAGG-AATAACAACCGGCACGAA
1 TGCCTTCGGGACTTAACCC-GGAAATAACAACCAGCACGAA
*
85235903 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGAAATAA
85235930 TCCTCAATTG
Statistics
Matches: 126, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
Found at i:85238021 original size:31 final size:31
Alignment explanation
Indices: 85237980--85238043 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
85237970 CCTTTTCATA
*
85237980 TTTCATATTTCATAACACTGGGCAGAAGCCT
1 TTTCAAATTTCATAACACTGGGCAGAAGCCT
** *
85238011 TTTCAAATTTCATATTACTGGGCTGAAGCCT
1 TTTCAAATTTCATAACACTGGGCAGAAGCCT
85238042 TT
1 TT
85238044 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCAGAAGCCT
Found at i:85238259 original size:20 final size:20
Alignment explanation
Indices: 85238234--85238272 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
85238224 GCTGCTNATA
85238234 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
85238254 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
85238273 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:85238278 original size:20 final size:20
Alignment explanation
Indices: 85238235--85238279 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
85238225 CTGCTNATAT
**
85238235 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
85238255 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
85238275 CATGT
1 CATGT
85238280 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:85238643 original size:32 final size:32
Alignment explanation
Indices: 85238601--85238662 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
85238591 CCTTTTCATA
*
85238601 TTTCATATTTCATAACACTGGGCCAAAGCCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCCT
** *
85238633 TTTCAAATTTCATATTACTGGGCCGAAGCC
1 TTTCAAATTTCATAACACTGGGCCAAAGCC
85238663 TTTACTGTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (32 bp):
TTTCAAATTTCATAACACTGGGCCAAAGCCCT
Found at i:85238910 original size:24 final size:24
Alignment explanation
Indices: 85238859--85238953 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
85238849 GCTTTATCAT
*
85238859 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
85238884 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
85238908 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
85238931 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
85238954 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.35
24 30 0.46
25 12 0.18
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:85238934 original size:23 final size:23
Alignment explanation
Indices: 85238880--85238952 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
85238870 CCTAGCCTCT
*
85238880 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
85238903 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
85238927 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
85238950 TTT
1 TTT
85238953 TTCACTTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:85239028 original size:20 final size:20
Alignment explanation
Indices: 85239003--85239069 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
85238993 TTATGAATAC
85239003 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
85239023 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
85239043 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
85239063 ACCATGT
1 ATCATGT
85239070 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:85239034 original size:11 final size:11
Alignment explanation
Indices: 85239003--85239058 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
85238993 TTATGAATAC
85239003 ATCATGTGCAT
1 ATCATGTGCAT
*
85239014 ATCA--TACAT
1 ATCATGTGCAT
85239023 ATCATGTGCAT
1 ATCATGTGCAT
*
85239034 ATCA--TACAT
1 ATCATGTGCAT
*
85239043 GTCATGTGCAT
1 ATCATGTGCAT
85239054 ATCAT
1 ATCAT
85239059 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:85239138 original size:25 final size:25
Alignment explanation
Indices: 85239106--85239153 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
85239096 ATACATAAAC
* *
85239106 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
85239131 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
85239154 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:85252783 original size:44 final size:43
Alignment explanation
Indices: 85252734--85252860 Score: 132
Period size: 43 Copynumber: 2.9 Consensus size: 43
85252724 CGGGCCTCGA
* *
85252734 CCTAGCAAGCTTTAA-GCTAGTGA-ATAATATTATCGGGCTTCGGG
1 CCTAGCAAGCTATAATGCCAGTGAGAT-A-A-TATCGGGCTTCGGG
* *
85252778 CCTAGCAGGCTATAATGCCGGTGAGATAATATCGGGCTTCGGG
1 CCTAGCAAGCTATAATGCCAGTGAGATAATATCGGGCTTCGGG
* * * * *
85252821 CCTAGCAGGCTATAATGCCGGAGAAATGATATCGGGCTTC
1 CCTAGCAAGCTATAATGCCAGTGAGATAATATCGGGCTTC
85252861 AAGCCTATCA
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
43 51 0.69
44 14 0.19
45 7 0.09
46 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (43 bp):
CCTAGCAAGCTATAATGCCAGTGAGATAATATCGGGCTTCGGG
Found at i:85252811 original size:43 final size:43
Alignment explanation
Indices: 85252759--85252887 Score: 179
Period size: 43 Copynumber: 3.0 Consensus size: 43
85252749 GCTAGTGAAT
*
85252759 AATATTATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
* *
85252802 GATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGAGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
* ** * *
85252845 AATGATATCGGGCTTCAAGCCTATCAGGCGA-AATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
85252887 A
1 A
85252888 TGAGTTCAGA
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
42 11 0.14
43 65 0.86
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (43 bp):
AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
Found at i:85254834 original size:53 final size:55
Alignment explanation
Indices: 85254728--85254841 Score: 153
Period size: 55 Copynumber: 2.1 Consensus size: 55
85254718 AGGCAAGGAT
* * *
85254728 ACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATGTAAG
1 ACCATGCCAAGACATGACATTGATAAGTTACTATAAGGCAAAGGTACCATGTAAG
* *
85254783 ACCATGCCAAGGCATGACATTGGTAAGTT-C-ATAAGGC-AAGGATACCATGTAAG
1 ACCATGCCAAGACATGACATTGATAAGTTACTATAAGGCAAAGG-TACCATGTAAG
85254836 ACCATG
1 ACCATG
85254842 TTGAGACATG
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
52 4 0.08
53 23 0.43
54 1 0.02
55 25 0.47
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (55 bp):
ACCATGCCAAGACATGACATTGATAAGTTACTATAAGGCAAAGGTACCATGTAAG
Found at i:85254860 original size:53 final size:55
Alignment explanation
Indices: 85254728--85254864 Score: 172
Period size: 53 Copynumber: 2.5 Consensus size: 55
85254718 AGGCAAGGAT
* *
85254728 ACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATGTAAG
1 ACCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCAAAGGTACCATGTAAG
* * *
85254783 ACCATGCCAAGGCATGACATTGGTAAGTT-C-ATAAGGC-AAGGATACCATGTAAG
1 ACCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCAAAGG-TACCATGTAAG
** *
85254836 ACCATGTTGAGACATGGCAATGGTAAGTT
1 ACCATGTCAAGACATGGCATTGGTAAGTT
85254865 TCAAACGGAT
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.06
53 40 0.57
54 1 0.01
55 25 0.36
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (55 bp):
ACCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCAAAGGTACCATGTAAG
Found at i:85255129 original size:16 final size:16
Alignment explanation
Indices: 85255108--85255138 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85255098 ATAAATTTGA
85255108 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
85255124 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
85255139 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:85256081 original size:17 final size:17
Alignment explanation
Indices: 85256059--85256092 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
85256049 ATTTTTCACT
85256059 ACTCTAGCTATAGGATG
1 ACTCTAGCTATAGGATG
* *
85256076 ACTCTAGTTGTAGGATG
1 ACTCTAGCTATAGGATG
85256093 GCTACTCCGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (17 bp):
ACTCTAGCTATAGGATG
Found at i:85256518 original size:27 final size:27
Alignment explanation
Indices: 85256365--85256510 Score: 238
Period size: 27 Copynumber: 5.4 Consensus size: 27
85256355 ATTACCAAAG
85256365 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
85256392 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
85256419 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
85256446 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * *
85256473 TACCCTCGATTTACAAAATTACTGATT
1 TACCCTCGATTTATAGAATTACTGTTT
85256500 TACCCTCGATT
1 TACCCTCGATT
85256511 GTGAAAATAC
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:85256552 original size:27 final size:27
Alignment explanation
Indices: 85256514--85256641 Score: 82
Period size: 27 Copynumber: 4.8 Consensus size: 27
85256504 CTCGATTGTG
*
85256514 AAAA-TACTAAAATACCCCTACAGGGT
1 AAAATTACCAAAATACCCCTACAGGGT
* ****
85256540 AGAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTACAGGGT
* *****
85256567 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTACAGGGT
* **
85256594 AAAATTACCGAAATA-CCCT-CAATTTGT
1 AAAATTACCAAAATACCCCTAC-A-GGGT
85256621 AAAATTACCAAAATACCCCTA
1 AAAATTACCAAAATACCCCTA
85256642 ATTTACAAAA
Statistics
Matches: 83, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
26 6 0.07
27 73 0.88
28 4 0.05
ACGTcount: A:0.43, C:0.23, G:0.09, T:0.26
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTACAGGGT
Found at i:85256600 original size:54 final size:55
Alignment explanation
Indices: 85256542--85256743 Score: 171
Period size: 54 Copynumber: 3.7 Consensus size: 55
85256532 TACAGGGTAG
**
85256542 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCACTGGTTTGTAA
1 AATTACCAAAATACCCCTCAGTTTGTAAAATTACCAAAATACCACTGGTTTACAA
* * * **
85256596 AATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTCAGTTTGTAAAATTACCAAAATACCACTGGTTTACAA
* * * * * *
85256650 AATTA-CAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCCTCAGTTTGT-AAAATTACCA-AAATACCACTGGTTTACAA
** ** * *
85256706 AATTACTGAAATA-CCCTTGGTTTGTAGATTTACCAAAA
1 AATTACCAAAATACCCCTCAGTTTGTAAAATTACCAAAA
85256744 CACCCTTGTA
Statistics
Matches: 114, Mismatches: 27, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
53 5 0.04
54 60 0.53
55 17 0.15
56 32 0.28
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (55 bp):
AATTACCAAAATACCCCTCAGTTTGTAAAATTACCAAAATACCACTGGTTTACAA
Found at i:85256644 original size:27 final size:27
Alignment explanation
Indices: 85256542--85256665 Score: 153
Period size: 27 Copynumber: 4.6 Consensus size: 27
85256532 TACAGGGTAG
*
85256542 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* **
85256569 AATTACCAAAATACCACTGGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
*
85256596 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
**
85256623 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
85256650 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
85256666 TTGACTTTCT
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
26 5 0.06
27 76 0.89
28 4 0.05
ACGTcount: A:0.44, C:0.23, G:0.06, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:85256716 original size:27 final size:27
Alignment explanation
Indices: 85256567--85256728 Score: 96
Period size: 27 Copynumber: 5.9 Consensus size: 27
85256557 CCTAGTTTGT
** **
85256567 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACTGAAATACC-CTTGGTTTAC
* *** **
85256594 AAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACTGAAATACCCTTGGTTTAC
** * **
85256621 AAAATTACCAAAATACCCCTAATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
85256648 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
*
85256675 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
85256704 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
85256729 GTAGATTTAC
Statistics
Matches: 110, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
26 1 0.01
27 83 0.75
28 7 0.06
29 19 0.17
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:85257725 original size:24 final size:25
Alignment explanation
Indices: 85257654--85257720 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
85257644 AGGAAGTGCT
* * *
85257654 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
85257679 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
85257704 AAAAGGGCTTTGCCCCA
1 AAAAGGGCTTTGCCCCA
85257721 ATTATTAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:85257730 original size:24 final size:25
Alignment explanation
Indices: 85257654--85257730 Score: 93
Period size: 25 Copynumber: 3.1 Consensus size: 25
85257644 AGGAAGTGCT
* * * *
85257654 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGATTATCA
*
85257679 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGATTATCA
*
85257704 AAAAGGGCTTTGCCCCA-ATTATTA
1 AAAAGGGCTTTGCCCCAGATTATCA
85257728 AAA
1 AAA
85257731 GAGGCTAGGC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 8 0.17
25 39 0.83
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGATTATCA
Found at i:85257736 original size:24 final size:24
Alignment explanation
Indices: 85257679--85257750 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
85257669 CAGTTTACCG
*
85257679 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCA-ATTATC
*
85257703 AAAA-AGGGCTTTGCCCCAATTATT
1 AAAAGA-GGCTTTGCCCCAATTATC
**
85257727 AAAAGAGGCTAGGCCTCCAATTAT
1 AAAAGAGGCTTTGCC-CCAATTAT
85257751 ATGATAAAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 19 0.47
25 21 0.52
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAATTATC
Found at i:85258058 original size:28 final size:28
Alignment explanation
Indices: 85258005--85258061 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
85257995 CGAGACTGAA
* *
85258005 TTAAGGCTTAGGCCCATACTGCTACTGT
1 TTAAGGCTAAGGCCCAGACTGCTACTGT
85258033 TTAAGGGCTAAGGCCCAGACTG-TACTGT
1 TTAA-GGCTAAGGCCCAGACTGCTACTGT
85258061 T
1 T
85258062 ACTGAATAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (28 bp):
TTAAGGCTAAGGCCCAGACTGCTACTGT
Found at i:85259964 original size:27 final size:27
Alignment explanation
Indices: 85259908--85259985 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
85259898 GCGCCACTGG
* * *
85259908 TTTGTGAAATTACCGAAATACCCTTAA
1 TTTGTAAAATTACCAAAATACCCTCAA
85259935 TTTGTAAAATTACCAAAATACCC-CAGA
1 TTTGTAAAATTACCAAAATACCCTCA-A
** *
85259962 TTTACAAAATTACAAAAATACCCT
1 TTTGTAAAATTACCAAAATACCCT
85259986 TGACTTTCTA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
26 1 0.02
27 42 0.98
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (27 bp):
TTTGTAAAATTACCAAAATACCCTCAA
Found at i:85260035 original size:27 final size:27
Alignment explanation
Indices: 85259996--85260047 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
85259986 TGACTTTCTA
*
85259996 AAAATTATAGAAATATCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
85260023 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
85260048 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:85261013 original size:25 final size:25
Alignment explanation
Indices: 85260975--85261029 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
85260965 AGGAAGTGCT
* *
85260975 AAAAGGGCTATGCCTCAGTTTA-CTA
1 AAAAGAGCTATGCCCCAGTTTATC-A
*
85261000 AAAAGAGCTTTGCCCCAGTTTATCA
1 AAAAGAGCTATGCCCCAGTTTATCA
85261025 AAAAG
1 AAAAG
85261030 GGATTTTCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 25 0.96
26 1 0.04
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (25 bp):
AAAAGAGCTATGCCCCAGTTTATCA
Found at i:85261312 original size:31 final size:31
Alignment explanation
Indices: 85261262--85261345 Score: 118
Period size: 31 Copynumber: 2.8 Consensus size: 31
85261252 ACCGCTTACA
*
85261262 GAAAAGGCTTTGG-CCAGTGATATGATTTAT
1 GAAAAGGCTTCGGCCCAGTGATATGATTTAT
* * *
85261292 TAGAAGGCTTCGGCCCAGTGACATGATTTAT
1 GAAAAGGCTTCGGCCCAGTGATATGATTTAT
85261323 GAAAAGGCTTCGGCCCAGT-ATAT
1 GAAAAGGCTTCGGCCCAGTGATAT
85261346 CTCGAGATTG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
30 13 0.28
31 33 0.72
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (31 bp):
GAAAAGGCTTCGGCCCAGTGATATGATTTAT
Found at i:85262047 original size:9 final size:9
Alignment explanation
Indices: 85262033--85262062 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
85262023 ATTGTTATTC
85262033 TTTTATTTT
1 TTTTATTTT
85262042 TTTTA-TTT
1 TTTTATTTT
85262050 TTTTATTTT
1 TTTTATTTT
85262059 TTTT
1 TTTT
85262063 TGAAATTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTATTTT
Found at i:85262050 original size:7 final size:8
Alignment explanation
Indices: 85262027--85262061 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
85262017 AAAATTATTG
*
85262027 TTATTCTT
1 TTATTTTT
85262035 TTATTTTTT
1 TTA-TTTTT
85262044 TTATTTTT
1 TTATTTTT
85262052 TTATTTTT
1 TTATTTTT
85262060 TT
1 TT
85262062 TTGAAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 18 0.72
9 7 0.28
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (8 bp):
TTATTTTT
Found at i:85262053 original size:17 final size:17
Alignment explanation
Indices: 85262027--85262062 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
85262017 AAAATTATTG
85262027 TTATTCTTTTATTTTTT
1 TTATTCTTTTATTTTTT
*
85262044 TTATTTTTTTATTTTTT
1 TTATTCTTTTATTTTTT
85262061 TT
1 TT
85262063 TGAAATTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (17 bp):
TTATTCTTTTATTTTTT
Found at i:85263043 original size:32 final size:32
Alignment explanation
Indices: 85263007--85263067 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
85262997 AACAGGGGGC
85263007 GGCAAGAGTTGGTGTTGAATTTAAACTCTATT
1 GGCAAGAGTTGGTGTTGAATTTAAACTCTATT
85263039 GGCAAGAGTTGGTGTTGAATTTAAACTCT
1 GGCAAGAGTTGGTGTTGAATTTAAACTCT
85263068 GATGTTGGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (32 bp):
GGCAAGAGTTGGTGTTGAATTTAAACTCTATT
Found at i:85263452 original size:27 final size:27
Alignment explanation
Indices: 85263413--85263485 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
85263403 CTCATATTTG
* *
85263413 TAGGCTAGTATTACTGAATTGCCCGTA
1 TAGGATAGAATTACTGAATTGCCCGTA
* * *
85263440 TAGGATAGAATTACTGAAATGCCCTTG
1 TAGGATAGAATTACTGAATTGCCCGTA
* *
85263467 TAGGGTAAAATTACTGAAT
1 TAGGATAGAATTACTGAAT
85263486 ACCTTTGGTT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.32
Consensus pattern (27 bp):
TAGGATAGAATTACTGAATTGCCCGTA
Found at i:85263623 original size:27 final size:27
Alignment explanation
Indices: 85263499--85263789 Score: 149
Period size: 27 Copynumber: 10.7 Consensus size: 27
85263489 TTTGGTTTAC
* * **
85263499 AAAATTACCAAAGTACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
* * * * ** *
85263526 GAAATTACCGAAATACCATCAACCTAT
1 AAAATTACCAAAATACCCTTAATTTGT
* ** *
85263553 AAAATTACCGAAATACCC-CCACTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
** *
85263579 AAAATTACTGAAATACCCTTAATTTTT
1 AAAATTACCAAAATACCCTTAATTTGT
* *
85263606 AAAATTACCAAAATACCCTTGATTTGG
1 AAAATTACCAAAATACCCTTAATTTGT
* *
85263633 AAAATTACTAAAATACCCTTAATTTGG
1 AAAATTACCAAAATACCCTTAATTTGT
* **
85263660 AAAATTA-CAGAAATACCCCTAATTTAC
1 AAAATTACCA-AAATACCCTTAATTTGT
* * *
85263687 AAAATTA-CAGAAATATCCTTGACTTTCT
1 AAAATTACCA-AAATACCCTT-AATTTGT
* * ** *
85263715 AAAAATTA-GAGAAATACCATTGGTTTGC
1 -AAAATTACCA-AAATACCCTTAATTTGT
** **
85263743 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
* * *
85263770 AGATTTACCAAAACACCCTT
1 AAAATTACCAAAATACCCTT
85263790 GTAGGTAAAA
Statistics
Matches: 206, Mismatches: 53, Indels: 10
0.77 0.20 0.04
Matches are distributed among these distances:
26 23 0.11
27 159 0.77
28 7 0.03
29 17 0.08
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAATTTGT
Found at i:85263651 original size:54 final size:54
Alignment explanation
Indices: 85263499--85263818 Score: 186
Period size: 54 Copynumber: 5.9 Consensus size: 54
85263489 TTTGGTTTAC
* * * ** * * ** *
85263499 AAAATTACCAAAGTACCCCTGGTTTGTG-AAATTACCGAAATACCATCAACCTAT
1 AAAATTACCAAAATACCCTTGATTTG-GAAAATTACTAAAATACCCTTAATTTGT
* ** * * * *
85263553 AAAATTACCGAAATACCC-CCACTTGTAAAATTACTGAAATACCCTTAATTTTT
1 AAAATTACCAAAATACCCTTGATTTGGAAAATTACTAAAATACCCTTAATTTGT
*
85263606 AAAATTACCAAAATACCCTTGATTTGGAAAATTACTAAAATACCCTTAATTTGG
1 AAAATTACCAAAATACCCTTGATTTGGAAAATTACTAAAATACCCTTAATTTGT
* * ** * * *
85263660 AAAATTA-CAGAAATACCCCTAATTTACAAAATTAC-AGAAATATCCTTGACTTTCT
1 AAAATTACCA-AAATACCCTTGATTTGGAAAATTACTA-AAATACCCTT-AATTTGT
* * * * * **
85263715 AAAAATTA-GAGAAATACCATTGGTTTGCAAAATTACTGAAATACCCTTGGTTTGT
1 -AAAATTACCA-AAATACCCTTGATTTGGAAAATTACTAAAATACCCTTAATTTGT
* * * * * *
85263770 AGATTTACCAAAACACCCTTG--TAGGTAAAATGACTAAAATACCCCTAAT
1 AAAATTACCAAAATACCCTTGATTTGG-AAAATTACTAAAATACCCTTAAT
85263819 AGGTAAAAAG
Statistics
Matches: 205, Mismatches: 52, Indels: 19
0.74 0.19 0.07
Matches are distributed among these distances:
52 2 0.01
53 61 0.30
54 95 0.46
55 9 0.04
56 38 0.19
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTTGATTTGGAAAATTACTAAAATACCCTTAATTTGT
Found at i:85263815 original size:27 final size:28
Alignment explanation
Indices: 85263785--85263883 Score: 80
Period size: 27 Copynumber: 3.7 Consensus size: 28
85263775 TACCAAAACA
**
85263785 CCCTTGTA-GGTAAAATGACTAAAATAC
1 CCCTTGTAGGGTAAAATGACTGTAATAC
** * * *
85263812 CCCTAATA-GGTAAAAAGACCGTAATGC
1 CCCTTGTAGGGTAAAATGACTGTAATAC
*
85263839 CCC-TGTAGGGTAAAGTGACTGTAATA-
1 CCCTTGTAGGGTAAAATGACTGTAATAC
* *
85263865 CCCTTGTATGGCAAAATGA
1 CCCTTGTAGGGTAAAATGA
85263884 TGATTATGCC
Statistics
Matches: 54, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
26 5 0.09
27 49 0.91
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (28 bp):
CCCTTGTAGGGTAAAATGACTGTAATAC
Found at i:85264285 original size:28 final size:30
Alignment explanation
Indices: 85264254--85264376 Score: 97
Period size: 33 Copynumber: 3.9 Consensus size: 30
85264244 TACTGCATTT
*
85264254 GGCTTAGGCCA-AC-ACTGCTACTGTATAG
1 GGCTTAGGCCAGACTACTGATACTGTATAG
85264282 GGCTTAGGTCCAGACTGTACTGATACTGTATAG
1 GGCTTAGG-CCAGAC--TACTGATACTGTATAG
* * *
85264315 GGCTTAGGCCCAGATTGTGCTGATACTGAATAG
1 GGCTTAGG-CCAGA--CTACTGATACTGTATAG
* *
85264348 GCCTTTGGCCCAGACTGTACTGATACTGT
1 GGCTTAGG-CCAGAC--TACTGATACTGT
85264377 GTTATTCACT
Statistics
Matches: 76, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
28 8 0.11
29 3 0.04
30 2 0.03
33 63 0.83
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (30 bp):
GGCTTAGGCCAGACTACTGATACTGTATAG
Found at i:85264314 original size:33 final size:33
Alignment explanation
Indices: 85264267--85264376 Score: 157
Period size: 33 Copynumber: 3.3 Consensus size: 33
85264257 TTAGGCCAAC
* *
85264267 ACTGCTACTGTATAGGGCTTAGGTCCAGACTGT
1 ACTGATACTGTATAGGGCTTAGGCCCAGACTGT
*
85264300 ACTGATACTGTATAGGGCTTAGGCCCAGATTGT
1 ACTGATACTGTATAGGGCTTAGGCCCAGACTGT
* * * *
85264333 GCTGATACTGAATAGGCCTTTGGCCCAGACTGT
1 ACTGATACTGTATAGGGCTTAGGCCCAGACTGT
85264366 ACTGATACTGT
1 ACTGATACTGT
85264377 GTTATTCACT
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (33 bp):
ACTGATACTGTATAGGGCTTAGGCCCAGACTGT
Found at i:85274172 original size:27 final size:26
Alignment explanation
Indices: 85274036--85274181 Score: 112
Period size: 27 Copynumber: 5.4 Consensus size: 26
85274026 TTACCCTCAA
**
85274036 TTGTAAAATTACTGAAATACCCCTAT
1 TTGTAAAATTACCAAAATACCCCTAT
** *
85274062 AGGGTAGAATTACCAAAATACCCCTAGT
1 -TTGTAAAATTACCAAAATACCCCTA-T
* * *
85274090 TTGTAAAATTTCCAAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCT-AT
* ** * *
85274117 TTGTGAAATTACTGAAATATCCTCAAT
1 TTGTAAAATTACCAAAATA-CCCCTAT
85274144 TTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCT-AT
**
85274171 TTACAAAATTA
1 TTGTAAAATTA
85274182 TAGAAATACC
Statistics
Matches: 90, Mismatches: 25, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
26 3 0.03
27 83 0.92
28 4 0.04
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACCAAAATACCCCTAT
Found at i:85274180 original size:54 final size:55
Alignment explanation
Indices: 85274089--85274250 Score: 168
Period size: 54 Copynumber: 2.9 Consensus size: 55
85274079 ATACCCCTAG
* *** *
85274089 TTTGTAAAATTTCCAAAATACCACTGGTTTGTGAAATTACTGAAATATCC-TCAA
1 TTTGTAAAATTACCAAAATACCACTGGTTTACAAAATTACTGAAATACCCTTCAA
* * * *
85274143 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTA-TAGAAATACCCTTGAC
1 TTTGTAAAATTACCAAAATACCACTGGTTTACAAAATTACT-GAAATACCCTTCAA
* * *
85274198 TTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTT
1 TTTGT-AAAATTACCA-AAATACCACTGGTTTACAAAATTACTGAAATACCCTT
85274251 GGTTTGTAGA
Statistics
Matches: 89, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
53 1 0.01
54 41 0.46
55 7 0.08
56 39 0.44
57 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (55 bp):
TTTGTAAAATTACCAAAATACCACTGGTTTACAAAATTACTGAAATACCCTTCAA
Found at i:85274188 original size:27 final size:27
Alignment explanation
Indices: 85274158--85274251 Score: 111
Period size: 27 Copynumber: 3.4 Consensus size: 27
85274148 AAAATTACCA
*
85274158 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
85274185 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTGA-TTTAC--AAAATTATAG
* *
85274214 AAATACCATTGGTTTACAAAATTACT-G
1 AAATACCCTTGATTTACAAAATTA-TAG
85274241 AAATACCCTTG
1 AAATACCCTTG
85274252 GTTTGTAGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
27 30 0.52
28 7 0.12
29 21 0.36
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:85275241 original size:25 final size:25
Alignment explanation
Indices: 85275203--85275272 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
85275193 AGGAAGTGCT
* *
85275203 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
85275228 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
85275253 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
85275273 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:85275285 original size:24 final size:24
Alignment explanation
Indices: 85275202--85275297 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
85275192 GAGGAAGTGC
*
85275202 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
85275227 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
85275251 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
85275275 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
85275298 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:85275296 original size:50 final size:50
Alignment explanation
Indices: 85275203--85275297 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
85275193 AGGAAGTGCT
**
85275203 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
85275253 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
85275298 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:85275528 original size:30 final size:30
Alignment explanation
Indices: 85275494--85275573 Score: 117
Period size: 31 Copynumber: 2.7 Consensus size: 30
85275484 CTTACAGTAT
85275494 AGGCTTCGGCCAGTGATATGATTTATGAAA
1 AGGCTTCGGCCAGTGATATGATTTATGAAA
*
85275524 AGGCTTCAGCCCAGTGATATGATTTATGAAA
1 AGGCTTC-GGCCAGTGATATGATTTATGAAA
* *
85275555 AGTCTTTGGCCAGT-ATATG
1 AGGCTTCGGCCAGTGATATG
85275574 TCGAGACTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
29 5 0.11
30 13 0.29
31 27 0.60
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (30 bp):
AGGCTTCGGCCAGTGATATGATTTATGAAA
Found at i:85277563 original size:27 final size:27
Alignment explanation
Indices: 85277510--85277569 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
85277500 ATTACCAAAG
* * *
85277510 TACCCTCGATTTATAGAATCACTGTTT
1 TACCCTCGATTTACAAAATCACAGTTT
**
85277537 TACCCTCGATTTACAAAATTGCAGTTT
1 TACCCTCGATTTACAAAATCACAGTTT
85277564 TACCCT
1 TACCCT
85277570 TGACTGTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.25, G:0.10, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATCACAGTTT
Found at i:85277636 original size:27 final size:27
Alignment explanation
Indices: 85277574--85277648 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
85277564 TACCCTTGAC
**
85277574 TGTAAAATTACTGAAATACCCCTATAG
1 TGTAAAATTACCAAAATACCCCTATAG
* * *
85277601 GGTAGAATTACCAAAATACCCCTAGT-T
1 TGTAAAATTACCAAAATACCCCTA-TAG
*
85277628 TGTAAAATTACCAAAGTACCC
1 TGTAAAATTACCAAAATACCC
85277649 TCGATTTATA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
27 38 0.97
28 1 0.03
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCCTATAG
Found at i:85277697 original size:27 final size:27
Alignment explanation
Indices: 85277644--85277703 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
85277634 ATTACCAAAG
* * *
85277644 TACCCTCGATTTATAGAATCACTGTTT
1 TACCCTCGATTTACAAAATCACAGTTT
**
85277671 TACCCTCGATTTACAAAATTGCAGTTT
1 TACCCTCGATTTACAAAATCACAGTTT
85277698 TACCCT
1 TACCCT
85277704 TGACTGTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.25, G:0.10, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATCACAGTTT
Found at i:85277712 original size:134 final size:134
Alignment explanation
Indices: 85277493--85277782 Score: 571
Period size: 134 Copynumber: 2.2 Consensus size: 134
85277483 TACCCTCGAC
85277493 TTGTAAAATTACCAAAGTACCCTCGATTTATAGAATCACTGTTTTACCCTCGATTTACAAAATTG
1 TTGTAAAATTACCAAAGTACCCTCGATTTATAGAATCACTGTTTTACCCTCGATTTACAAAATTG
85277558 CAGTTTTACCCTTGACTGTAAAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAATACCCC
66 CAGTTTTACCCTTGACTGTAAAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAATACCCC
85277623 TAGT
131 TAGT
85277627 TTGTAAAATTACCAAAGTACCCTCGATTTATAGAATCACTGTTTTACCCTCGATTTACAAAATTG
1 TTGTAAAATTACCAAAGTACCCTCGATTTATAGAATCACTGTTTTACCCTCGATTTACAAAATTG
85277692 CAGTTTTACCCTTGACTGTAAAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAATACCCC
66 CAGTTTTACCCTTGACTGTAAAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAATACCCC
85277757 TAGT
131 TAGT
*
85277761 TTGTAAAATTACCAAAATACCC
1 TTGTAAAATTACCAAAGTACCC
85277783 CTAGTTTGTA
Statistics
Matches: 155, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
134 155 1.00
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.32
Consensus pattern (134 bp):
TTGTAAAATTACCAAAGTACCCTCGATTTATAGAATCACTGTTTTACCCTCGATTTACAAAATTG
CAGTTTTACCCTTGACTGTAAAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAATACCCC
TAGT
Found at i:85277770 original size:27 final size:27
Alignment explanation
Indices: 85277708--85277862 Score: 170
Period size: 27 Copynumber: 5.7 Consensus size: 27
85277698 TACCCTTGAC
** *
85277708 TGTAAAATTACTGAAATACCCCTA-TAG
1 TGTAAAATTACCAAAATACCCCTAGT-T
* *
85277735 GGTAGAATTACCAAAATACCCCTAGTT
1 TGTAAAATTACCAAAATACCCCTAGTT
85277762 TGTAAAATTACCAAAATACCCCTAGTT
1 TGTAAAATTACCAAAATACCCCTAGTT
* * * *
85277789 TGTAAAATTATCGAAATACCACTGGTT
1 TGTAAAATTACCAAAATACCCCTAGTT
* * *
85277816 TGTGAAATTACCGAAATA-CCCTCAATT
1 TGTAAAATTACCAAAATACCCCT-AGTT
85277843 TGTAAAATTACCAAAATACC
1 TGTAAAATTACCAAAATACC
85277863 TCTGATTTAC
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.03
27 102 0.95
28 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCCTAGTT
Found at i:85277825 original size:81 final size:81
Alignment explanation
Indices: 85277740--85277889 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 81
85277730 TATAGGGTAG
* ** *
85277740 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTATCGA
1 AATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTATAGA
85277803 AATACCACTGGTTTGTGA
64 AATACCACTGGTTTGTGA
* *
85277821 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCTCTGATTTACAAAATTATAGAAA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTATAGAAA
85277886 TACC
66 TACC
85277890 CTTGACTTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
81 59 0.97
82 2 0.03
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTATAGAAA
TACCACTGGTTTGTGA
Found at i:85277878 original size:54 final size:55
Alignment explanation
Indices: 85277708--85277891 Score: 171
Period size: 54 Copynumber: 3.4 Consensus size: 55
85277698 TACCCTTGAC
* ** * *
85277708 TGTAAAATTACTGAAATACCC-CT-ATAGGGTAGAATTACCAAAATACCCCT-AGTT
1 TGTAAAATTACCGAAATACCCTCTAAT-TTGTAAAATTACCAAAATACCACTGA-TT
* * * * *
85277762 TGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTATCGAAATACCACTGGTT
1 TGTAAAATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGATT
* *
85277816 TGTGAAATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAATACCTCTGATT
1 TGTAAAATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGATT
** **
85277870 TACAAAATTATAGAAATACCCT
1 TGTAAAATTACCGAAATACCCT
85277892 TGACTTTCTA
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
54 103 0.98
55 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (55 bp):
TGTAAAATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGATT
Found at i:85277886 original size:27 final size:27
Alignment explanation
Indices: 85277856--85277945 Score: 80
Period size: 27 Copynumber: 3.3 Consensus size: 27
85277846 AAAATTACCA
85277856 AAATACCTCTGATTTACAAAATTATAG
1 AAATACCTCTGATTTACAAAATTATAG
85277883 AAATACC-CTTGACTTT-CTAAAAATTATAG
1 AAATACCTC-TGA-TTTAC--AAAATTATAG
* *
85277912 AAATA-CTATTGGTTTACAAAATTACT-G
1 AAATACCT-CTGATTTACAAAATTA-TAG
85277939 AAATACC
1 AAATACC
85277946 CTTGGTTTGT
Statistics
Matches: 52, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
26 1 0.02
27 24 0.46
28 9 0.17
29 18 0.35
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATACCTCTGATTTACAAAATTATAG
Found at i:85277950 original size:27 final size:27
Alignment explanation
Indices: 85277868--85277953 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
85277858 ATACCTCTGA
*
85277868 TTTACAAAATTATAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCCTTG-G
**
85277896 TTT-CTAAAAATTATAGAAATACTATTGG
1 TTTAC--AAAATTATAGAAATACCCTTGG
85277924 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTACAAAATTA-TAGAAATACCCTTGG
85277951 TTT
1 TTT
85277954 GTAGATTTAC
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
27 22 0.45
28 7 0.14
29 20 0.41
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCCTTGG
Found at i:85278824 original size:16 final size:16
Alignment explanation
Indices: 85278803--85278834 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
85278793 CTGTGATTGT
*
85278803 TTGATTCAAATTTGGG
1 TTGATTCAAATATGGG
85278819 TTGATTCAAATATGGG
1 TTGATTCAAATATGGG
85278835 CATGACATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (16 bp):
TTGATTCAAATATGGG
Found at i:85278967 original size:24 final size:24
Alignment explanation
Indices: 85278896--85278978 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 24
85278886 AGGAAGTGCT
*
85278896 AAAAAGGCTATT-CCCCAGTTTACC
1 AAAAAGGCT-TTGCCCCAGTTTATC
* *
85278920 GAAAAAGGTTTTGCCTCAGTTTATC
1 -AAAAAGGCTTTGCCCCAGTTTATC
*
85278945 AAAAAGGGCTTTGCCCCAG-TTATT
1 AAAAA-GGCTTTGCCCCAGTTTATC
85278969 AAAAGAGGCT
1 AAAA-AGGCT
85278979 AGGCCTCCAG
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
24 19 0.39
25 30 0.61
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (24 bp):
AAAAAGGCTTTGCCCCAGTTTATC
Found at i:85279233 original size:31 final size:31
Alignment explanation
Indices: 85279184--85279266 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
85279174 CGCTTACAGT
85279184 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
85279214 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
85279245 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
85279267 TCGAGACTGA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 16 0.31
31 36 0.69
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:85282320 original size:11 final size:11
Alignment explanation
Indices: 85282294--85282346 Score: 56
Period size: 11 Copynumber: 5.0 Consensus size: 11
85282284 ATATTGTTAT
85282294 ACATGATATG-
1 ACATGATATGC
85282304 ACATGATATGC
1 ACATGATATGC
*
85282315 ACATGATAT-T
1 ACATGATATGC
** *
85282325 TTATGAGATGC
1 ACATGATATGC
85282336 ACATGATATGC
1 ACATGATATGC
85282347 TATGGTATAC
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
10 16 0.48
11 17 0.52
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:85282350 original size:21 final size:21
Alignment explanation
Indices: 85282294--85282350 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
85282284 ATATTGTTAT
*
85282294 ACATGATATGAC-ATGATATGC
1 ACATGATATG-CTATGAGATGC
**
85282315 ACATGATATTTTATGAGATGC
1 ACATGATATGCTATGAGATGC
85282336 ACATGATATGCTATG
1 ACATGATATGCTATG
85282351 GTATACTCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (21 bp):
ACATGATATGCTATGAGATGC
Found at i:85282452 original size:24 final size:23
Alignment explanation
Indices: 85282402--85282473 Score: 81
Period size: 25 Copynumber: 3.0 Consensus size: 23
85282392 AGGAAGTGTG
* *
85282402 AAAAGGGCTTTGCCCCAGTTTACC
1 AAAAGGGCTATGCCCCAG-TTATC
85282426 AAAAAGGGCTATGCCCCAGTTATC
1 -AAAAGGGCTATGCCCCAGTTATC
*
85282450 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTATGCC-CCAGTTAT
85282474 ATGATAAGGC
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
23 5 0.12
24 12 0.29
25 25 0.60
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (23 bp):
AAAAGGGCTATGCCCCAGTTATC
Found at i:85290342 original size:26 final size:26
Alignment explanation
Indices: 85290313--85290362 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
85290303 TCATAATATG
* *
85290313 AAAAATGACTATTTTA-CCCCTAGGT
1 AAAAATGACCATTGTACCCCCTAGGT
85290338 AAAAATGACCATTGTACCCCCTAGG
1 AAAAATGACCATTGTACCCCCTAGG
85290363 GTTTAATTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (26 bp):
AAAAATGACCATTGTACCCCCTAGGT
Found at i:85290425 original size:11 final size:11
Alignment explanation
Indices: 85290399--85290450 Score: 65
Period size: 11 Copynumber: 5.0 Consensus size: 11
85290389 ATATTGTTAT
85290399 ACATGATATG-
1 ACATGATATGC
85290409 ACATGATATGC
1 ACATGATATGC
85290420 ACATGATATG-
1 ACATGATATGC
* *
85290430 -TATGAGATGC
1 ACATGATATGC
85290440 ACATGATATGC
1 ACATGATATGC
85290451 TATGATATAC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 7 0.20
10 10 0.29
11 18 0.51
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (11 bp):
ACATGATATGC
Found at i:85290439 original size:20 final size:21
Alignment explanation
Indices: 85290399--85290455 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 21
85290389 ATATTGTTAT
* *
85290399 ACATGATATGACATGATATGC
1 ACATGATATGATATGAGATGC
85290420 ACATGATATG-TATGAGATGC
1 ACATGATATGATATGAGATGC
*
85290440 ACATGATATGCTATGA
1 ACATGATATGATATGA
85290456 TATACTCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 18 0.55
21 15 0.45
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (21 bp):
ACATGATATGATATGAGATGC
Found at i:85290563 original size:24 final size:25
Alignment explanation
Indices: 85290506--85290563 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
85290496 AGGAAGGGCG
85290506 AAAAG-GGCTTTGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTACC
*
85290530 AAAA-AGGGCTTTGCCCCAG-TTATC
1 AAAAGA-GGCTTTGCCCCAGTTTACC
85290554 AAAAGAGGCT
1 AAAAGAGGCT
85290564 AGGCCTCCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
24 16 0.53
25 14 0.47
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTACC
Found at i:85291700 original size:29 final size:29
Alignment explanation
Indices: 85291654--85291728 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 29
85291644 GTCCCATTAA
*
85291654 GCCC-AATCATATTCATATGGCCCGTTAG
1 GCCCAAATCACATTCATATGGCCCGTTAG
*
85291682 GCCCAAATCACATTTATATGGCCCGTTAG
1 GCCCAAATCACATTCATATGGCCCGTTAG
* *
85291711 GCCC-AGTCATATTCATAT
1 GCCCAAATCACATTCATAT
85291729 TCATTTTCAC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
28 15 0.37
29 26 0.63
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (29 bp):
GCCCAAATCACATTCATATGGCCCGTTAG
Found at i:85291957 original size:8 final size:8
Alignment explanation
Indices: 85291946--85291984 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
85291936 ACTTTCAGCT
*
85291946 TTTCGACA
1 TTTCGGCA
*
85291954 TTTCGGCT
1 TTTCGGCA
85291962 TTTCGGCA
1 TTTCGGCA
85291970 TTTCGGCA
1 TTTCGGCA
85291978 TTTCGGC
1 TTTCGGC
85291985 TTTTGCTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.10, C:0.26, G:0.23, T:0.41
Consensus pattern (8 bp):
TTTCGGCA
Found at i:85291962 original size:16 final size:16
Alignment explanation
Indices: 85291938--85291982 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
85291928 ATAGCAAAAC
*
85291938 TTTCAGCTTTTCGACA
1 TTTCGGCTTTTCGACA
*
85291954 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGACA
*
85291970 TTTCGGCATTTCG
1 TTTCGGCTTTTCG
85291983 GCTTTTGCTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.44
Consensus pattern (16 bp):
TTTCGGCTTTTCGACA
Found at i:85293185 original size:16 final size:16
Alignment explanation
Indices: 85293164--85293194 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85293154 GAAAATTCAA
85293164 GATTTCGAGATTTTTG
1 GATTTCGAGATTTTTG
*
85293180 GATTTCGGGATTTTT
1 GATTTCGAGATTTTT
85293195 AGGGCGTTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.06, G:0.26, T:0.52
Consensus pattern (16 bp):
GATTTCGAGATTTTTG
Found at i:85299375 original size:27 final size:29
Alignment explanation
Indices: 85299288--85299375 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 29
85299278 ACATACATGT
* * *
85299288 ATATGGCCCATTAAGCCCA-ATAATATTC
1 ATATGGCCCATTAGGCCCAGATCACATTC
*
85299316 ATATGGCCCATTAGGCCCAGATCACATTT
1 ATATGGCCCATTAGGCCCAGATCACATTC
*
85299345 ATATGGCCCGTTAGGCCC-G-TCACATTC
1 ATATGGCCCATTAGGCCCAGATCACATTC
85299372 ATAT
1 ATAT
85299376 TCATGCTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
27 11 0.21
28 19 0.36
29 23 0.43
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAGATCACATTC
Found at i:85302292 original size:26 final size:26
Alignment explanation
Indices: 85302256--85302307 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
85302246 ATACTGCCCC
85302256 TTGCACCTCTAACGGAACATCTCTAT
1 TTGCACCTCTAACGGAACATCTCTAT
85302282 TTGCACCTCTAACGGAACATCTCTAT
1 TTGCACCTCTAACGGAACATCTCTAT
85302308 AAAGTTTATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (26 bp):
TTGCACCTCTAACGGAACATCTCTAT
Found at i:85304747 original size:60 final size:60
Alignment explanation
Indices: 85304653--85304791 Score: 269
Period size: 60 Copynumber: 2.3 Consensus size: 60
85304643 AAATTCTACC
85304653 CCCATCCTCTACACACCATCTTCGACCATCCCATCACACCATGTGGGGTTAAAAACACCCA
1 CCCATCC-CTACACACCATCTTCGACCATCCCATCACACCATGTGGGGTTAAAAACACCCA
85304714 CCCATCCCTACACACCATCTTCGACCATCCCATCACACCATGTGGGGTTAAAAACACCCA
1 CCCATCCCTACACACCATCTTCGACCATCCCATCACACCATGTGGGGTTAAAAACACCCA
85304774 CCCATCCCTACACACCAT
1 CCCATCCCTACACACCAT
85304792 ATTGTGCCAT
Statistics
Matches: 78, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
60 71 0.91
61 7 0.09
ACGTcount: A:0.29, C:0.43, G:0.09, T:0.19
Consensus pattern (60 bp):
CCCATCCCTACACACCATCTTCGACCATCCCATCACACCATGTGGGGTTAAAAACACCCA
Found at i:85309619 original size:17 final size:17
Alignment explanation
Indices: 85309597--85309633 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
85309587 TAAAACTTAC
85309597 CTTAATAACCAACAGCT
1 CTTAATAACCAACAGCT
*
85309614 CTTAATAACCAATAGCT
1 CTTAATAACCAACAGCT
85309631 CTT
1 CTT
85309634 CAACCTGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (17 bp):
CTTAATAACCAACAGCT
Found at i:85311859 original size:23 final size:22
Alignment explanation
Indices: 85311741--85311973 Score: 125
Period size: 22 Copynumber: 10.2 Consensus size: 22
85311731 ATCACCCATC
*
85311741 AAACACAACCAATTTACCCT-T
1 AAACACAACCAATATACCCTCT
* *
85311762 GAAACATAACCAATTTACCCT-T
1 -AAACACAACCAATATACCCTCT
* * * *
85311784 CAGACACAACTAATGTACCAT-T
1 -AAACACAACCAATATACCCTCT
* *
85311806 CAAACACAACCATATATTTAACCTCC
1 -AAACACAACCA-ATA--TACCCTCT
*
85311832 GAACACAACCAAGTATACCCTCT
1 AAACACAACCAA-TATACCCTCT
* *
85311855 AAACACAACCAATTTACCCTCC
1 AAACACAACCAATATACCCTCT
* * * * *
85311877 GAACATAACCAAATGTA-CTTGCA
1 AAACACAACC-AATATACCCT-CT
* *
85311900 AAACACCACCATATATATAACCTCT
1 AAACACAACC--A-ATATACCCTCT
* *
85311925 GAACACAACCAAGTATACCCTCC
1 AAACACAACCAA-TATACCCTCT
85311948 AAACACAACCAATATACCCT-T
1 AAACACAACCAATATACCCTCT
85311969 AAACA
1 AAACA
85311974 TATATACTTA
Statistics
Matches: 163, Mismatches: 37, Indels: 23
0.73 0.17 0.10
Matches are distributed among these distances:
21 5 0.03
22 73 0.45
23 52 0.32
24 2 0.01
25 29 0.18
26 2 0.01
ACGTcount: A:0.43, C:0.32, G:0.04, T:0.21
Consensus pattern (22 bp):
AAACACAACCAATATACCCTCT
Found at i:85311921 original size:93 final size:92
Alignment explanation
Indices: 85311742--85311967 Score: 282
Period size: 93 Copynumber: 2.5 Consensus size: 92
85311732 TCACCCATCA
* * * *
85311742 AACACAACCAA-TTTACCCT-TGAAACATAACCAATTTACCCTTCAGACACAACTAATGTACCAT
1 AACACAACCAAGTATACCCTCT-AAACACAACCAATTTACCCTCCAGACACAACAAATGTACCAT
*
85311805 TCAAACACAACCATATATTTAACCTCCG
65 TCAAACACAACCATATATATAACCTCCG
*
85311833 AACACAACCAAGTATACCCTCTAAACACAACCAATTTACCCTCC-GAACATAACCAAATGTA-C-
1 AACACAACCAAGTATACCCTCTAAACACAACCAATTTACCCTCCAG-ACACAA-CAAATGTACCA
* *
85311895 TTGCAAAACACCACCATATATATAACCTCTG
64 TT-C-AAACACAACCATATATATAACCTCCG
* *
85311926 AACACAACCAAGTATACCCTCCAAACACAACCAATATACCCT
1 AACACAACCAAGTATACCCTCTAAACACAACCAATTTACCCT
85311968 TAAACATATA
Statistics
Matches: 119, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
91 14 0.12
92 34 0.29
93 71 0.60
ACGTcount: A:0.42, C:0.33, G:0.04, T:0.21
Consensus pattern (92 bp):
AACACAACCAAGTATACCCTCTAAACACAACCAATTTACCCTCCAGACACAACAAATGTACCATT
CAAACACAACCATATATATAACCTCCG
Found at i:85311952 original size:48 final size:47
Alignment explanation
Indices: 85311806--85311963 Score: 178
Period size: 48 Copynumber: 3.4 Consensus size: 47
85311796 ATGTACCATT
*
85311806 CAAACACAACCATATATTTAACCTCCGAACACAACCAAGTATACCCTC
1 CAAACACAACCA-ATATATAACCTCCGAACACAACCAAGTATACCCTC
* * * * * *
85311854 TAAACACAACCAAT-T-TACCCTCCGAACATAACCAAATGTA-CTTGC
1 CAAACACAACCAATATATAACCTCCGAACACAACCAAGTATACCCT-C
* * *
85311899 AAAACACCACCATATATATAACCTCTGAACACAACCAAGTATACCCTC
1 CAAACACAACCA-ATATATAACCTCCGAACACAACCAAGTATACCCTC
85311947 CAAACACAACCAATATA
1 CAAACACAACCAATATA
85311964 CCCTTAAACA
Statistics
Matches: 89, Mismatches: 16, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
44 2 0.02
45 32 0.36
46 3 0.03
47 8 0.09
48 42 0.47
49 2 0.02
ACGTcount: A:0.44, C:0.33, G:0.04, T:0.19
Consensus pattern (47 bp):
CAAACACAACCAATATATAACCTCCGAACACAACCAAGTATACCCTC
Found at i:85315302 original size:39 final size:39
Alignment explanation
Indices: 85315246--85315326 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
85315236 ATTTGGAAAA
* *
85315246 ATACCCATAGGTGAAATGTGTTTATTTTGATGTTTTATG
1 ATACCCATAGGTAAAATGTGTTTATTTTGATGCTTTATG
85315285 ATACCCATAGGTAAAATGTGTTTATTTTGATGCTTTATG
1 ATACCCATAGGTAAAATGTGTTTATTTTGATGCTTTATG
85315324 ATA
1 ATA
85315327 GAATATGAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.44
Consensus pattern (39 bp):
ATACCCATAGGTAAAATGTGTTTATTTTGATGCTTTATG
Found at i:85315560 original size:30 final size:29
Alignment explanation
Indices: 85315526--85315585 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
85315516 TTCCCGAGCC
*
85315526 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGT-AATATGAAAAAGTT
* * *
85315556 TAGGGGCAAAATTGTAATTTGAAAAAGTT
1 TAGGGGAAAAAGTGTAATATGAAAAAGTT
85315585 T
1 T
85315586 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 13 0.50
30 13 0.50
ACGTcount: A:0.43, C:0.03, G:0.25, T:0.28
Consensus pattern (29 bp):
TAGGGGAAAAAGTGTAATATGAAAAAGTT
Found at i:85321421 original size:36 final size:36
Alignment explanation
Indices: 85321374--85321446 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
85321364 TATATTATAA
* * **
85321374 TAGTGTGATGACTCTTGACGGTTTTAAACTGTGTTT
1 TAGTGTGATGACTCCTAACAATTTTAAACTGTGTTT
85321410 TAGTGTGATGACTCCTAACAATTTTAAACTGTGTTT
1 TAGTGTGATGACTCCTAACAATTTTAAACTGTGTTT
85321446 T
1 T
85321447 CATACAGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.23, C:0.12, G:0.21, T:0.44
Consensus pattern (36 bp):
TAGTGTGATGACTCCTAACAATTTTAAACTGTGTTT
Found at i:85323621 original size:16 final size:17
Alignment explanation
Indices: 85323589--85323620 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
85323579 TTGTTGGGGA
85323589 CCTTGGCTTTGGTTTTT
1 CCTTGGCTTTGGTTTTT
85323606 CCTT-GCTTT-GTTTTT
1 CCTTGGCTTTGGTTTTT
85323621 TTTTCCTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.00, C:0.19, G:0.19, T:0.62
Consensus pattern (17 bp):
CCTTGGCTTTGGTTTTT
Found at i:85325061 original size:26 final size:28
Alignment explanation
Indices: 85325002--85325066 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 28
85324992 CCCCAAAATA
*
85325002 GGTAAAATAACCGTAATACCCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTTGTAG
*
85325030 GGT-AAATGACCGTAATACCCC-TGTAT
1 GGTAAAATGACCGTAATACCCCTTGTAG
85325056 GGTAAAATGAC
1 GGTAAAATGAC
85325067 GATTATGCCC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 7 0.21
27 24 0.71
28 3 0.09
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (28 bp):
GGTAAAATGACCGTAATACCCCTTGTAG
Found at i:85328420 original size:47 final size:47
Alignment explanation
Indices: 85328313--85328694 Score: 647
Period size: 47 Copynumber: 8.1 Consensus size: 47
85328303 GAAATGATAG
85328313 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
85328362 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85328409 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85328456 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85328503 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85328550 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
85328597 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * *
85328644 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
85328691 TAAG
1 TAAG
85328695 TCCCGAAGGG
Statistics
Matches: 317, Mismatches: 16, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
47 282 0.89
49 35 0.11
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:85329564 original size:200 final size:200
Alignment explanation
Indices: 85329221--85329618 Score: 796
Period size: 200 Copynumber: 2.0 Consensus size: 200
85329211 AAAACTTACT
85329221 AAGCATTGTAATGCTTACTCCGTTTACTTTGTTTCCTCTGTTTTATAGATCTCATTTGGAAGCTA
1 AAGCATTGTAATGCTTACTCCGTTTACTTTGTTTCCTCTGTTTTATAGATCTCATTTGGAAGCTA
85329286 CAAGCTCGGGAATCGTCAGCAACTAGTCACACTATCACTACCCACTGTTTGGTACTGCTATGTTT
66 CAAGCTCGGGAATCGTCAGCAACTAGTCACACTATCACTACCCACTGTTTGGTACTGCTATGTTT
85329351 TGGATTATCTTATGGCATGTATAGAATAGACTAGTAGTGGGAGGATATTTTGGTTAATGTATATA
131 TGGATTATCTTATGGCATGTATAGAATAGACTAGTAGTGGGAGGATATTTTGGTTAATGTATATA
85329416 AGCCA
196 AGCCA
85329421 AAGCATTGTAATGCTTACTCCGTTTACTTTGTTTCCTCTGTTTTATAGATCTCATTTGGAAGCTA
1 AAGCATTGTAATGCTTACTCCGTTTACTTTGTTTCCTCTGTTTTATAGATCTCATTTGGAAGCTA
85329486 CAAGCTCGGGAATCGTCAGCAACTAGTCACACTATCACTACCCACTGTTTGGTACTGCTATGTTT
66 CAAGCTCGGGAATCGTCAGCAACTAGTCACACTATCACTACCCACTGTTTGGTACTGCTATGTTT
85329551 TGGATTATCTTATGGCATGTATAGAATAGACTAGTAGTGGGAGGATATTTTGGTTAATGTATATA
131 TGGATTATCTTATGGCATGTATAGAATAGACTAGTAGTGGGAGGATATTTTGGTTAATGTATATA
85329616 AGC
196 AGC
85329619 TATGCGAATA
Statistics
Matches: 198, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
200 198 1.00
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (200 bp):
AAGCATTGTAATGCTTACTCCGTTTACTTTGTTTCCTCTGTTTTATAGATCTCATTTGGAAGCTA
CAAGCTCGGGAATCGTCAGCAACTAGTCACACTATCACTACCCACTGTTTGGTACTGCTATGTTT
TGGATTATCTTATGGCATGTATAGAATAGACTAGTAGTGGGAGGATATTTTGGTTAATGTATATA
AGCCA
Found at i:85331275 original size:40 final size:40
Alignment explanation
Indices: 85330276--85331265 Score: 1856
Period size: 40 Copynumber: 24.8 Consensus size: 40
85330266 GAATTGAGAT
**
85330276 TGATATATCCAAGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330316 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330356 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330396 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330436 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330476 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330516 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330556 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330596 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330636 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330676 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330716 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330756 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330796 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330836 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330876 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330916 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330956 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85330996 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85331036 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85331076 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
85331116 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
85331156 TGATATACCCGAGCTAAGTCTCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * * *
85331196 AGTTATA-CCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGATATATCC-GGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
85331236 CGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 TGATATATCCGGGCTAAGTCCCGAAGAGCA
85331266 ATCACGCTGG
Statistics
Matches: 934, Mismatches: 14, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
39 2 0.00
40 930 1.00
41 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
Found at i:85334733 original size:46 final size:46
Alignment explanation
Indices: 85334680--85334771 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
85334670 TGAATCCTCG
85334680 TTCCCAAGCTTCAACTGGGCAATCATATGGGAATTATAAGAAGCAA
1 TTCCCAAGCTTCAACTGGGCAATCATATGGGAATTATAAGAAGCAA
* * *
85334726 TTCCCAAGCTTTAGCTGGGCAATCATATGGGAATTATAGGAAGCAA
1 TTCCCAAGCTTCAACTGGGCAATCATATGGGAATTATAAGAAGCAA
85334772 AATGTGGGTC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (46 bp):
TTCCCAAGCTTCAACTGGGCAATCATATGGGAATTATAAGAAGCAA
Found at i:85345144 original size:23 final size:23
Alignment explanation
Indices: 85345062--85345148 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
85345052 CCTGATCAGT
*
85345062 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
85345084 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
85345104 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
85345127 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
85345149 TCAGTAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:85346626 original size:15 final size:16
Alignment explanation
Indices: 85346603--85346632 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
85346593 ATTCTCCCTT
85346603 TTTCTTTTCTTTCCTC
1 TTTCTTTTCTTTCCTC
85346619 TTTC-TTTCTTTCCT
1 TTTCTTTTCTTTCCT
85346633 TCCCCTACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTCTTTTCTTTCCTC
Found at i:85352884 original size:22 final size:21
Alignment explanation
Indices: 85352849--85352890 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
85352839 AAGATATGTG
85352849 ATATGTGTTGATTTGAGAATTT
1 ATATGTGTTGATTTGA-AATTT
85352871 ATATGGTGTT-ATTTGAAATT
1 ATAT-GTGTTGATTTGAAATT
85352891 ATAAGTATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.21
22 10 0.53
23 5 0.26
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (21 bp):
ATATGTGTTGATTTGAAATTT
Found at i:85359756 original size:20 final size:20
Alignment explanation
Indices: 85359731--85359781 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
85359721 AGGGGCACAA
*
85359731 GCCCGTGTGGCTTGGGACAC
1 GCCCGTGTGGCTTAGGACAC
85359751 GCCCGTGTGGCTTAGGACAC
1 GCCCGTGTGGCTTAGGACAC
85359771 GCCCGTGTGGC
1 GCCCGTGTGGC
85359782 CTGGAACATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.10, C:0.31, G:0.39, T:0.20
Consensus pattern (20 bp):
GCCCGTGTGGCTTAGGACAC
Found at i:85364421 original size:20 final size:20
Alignment explanation
Indices: 85364396--85364446 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
85364386 AGGGGCACAA
*
85364396 GCCCGTGTGGCTTGGGACAC
1 GCCCGTGTGGCTTAGGACAC
85364416 GCCCGTGTGGCTTAGGACAC
1 GCCCGTGTGGCTTAGGACAC
85364436 GCCCGTGTGGC
1 GCCCGTGTGGC
85364447 CTGGAACATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.10, C:0.31, G:0.39, T:0.20
Consensus pattern (20 bp):
GCCCGTGTGGCTTAGGACAC
Found at i:85368008 original size:37 final size:38
Alignment explanation
Indices: 85367958--85368046 Score: 110
Period size: 37 Copynumber: 2.4 Consensus size: 38
85367948 ACAAGGTATT
* * * *
85367958 AAGCCTGAATAACACTAG-CACTAAGTCTGC-TGGGACA
1 AAGCCTGAATAACAC-AGACACTAAGGCTACTTAGCACA
*
85367995 AAGCCTGAATAACACCGACACTAAGGCTACTTAGCACA
1 AAGCCTGAATAACACAGACACTAAGGCTACTTAGCACA
85368033 AAGCCTGAATAACA
1 AAGCCTGAATAACA
85368047 TCAGTACTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
36 1 0.02
37 25 0.56
38 19 0.42
ACGTcount: A:0.39, C:0.26, G:0.18, T:0.17
Consensus pattern (38 bp):
AAGCCTGAATAACACAGACACTAAGGCTACTTAGCACA
Found at i:85368056 original size:38 final size:36
Alignment explanation
Indices: 85367958--85368084 Score: 112
Period size: 38 Copynumber: 3.4 Consensus size: 36
85367948 ACAAGGTATT
* * * *
85367958 AAGCCTGAATAACACTAGCACTAAGTCTGCTGGGACA
1 AAGCCTGAATAACAC-AGCACTAAGGCTACTAGCACA
*
85367995 AAGCCTGAATAACACCGACACTAAGGCTACTTAGCACA
1 AAGCCTGAATAACACAG-CACTAAGGCTAC-TAGCACA
* **
85368033 AAGCCTGAATAACATCAGTACTAA-GCTTGGTAGGCACA
1 AAGCCTGAATAACA-CAGCACTAAGGC-TACTA-GCACA
*
85368071 AAGCCTAAATAACA
1 AAGCCTGAATAACA
85368085 ATATAACTCA
Statistics
Matches: 75, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
36 1 0.01
37 29 0.39
38 43 0.57
39 2 0.03
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.18
Consensus pattern (36 bp):
AAGCCTGAATAACACAGCACTAAGGCTACTAGCACA
Found at i:85375357 original size:3 final size:3
Alignment explanation
Indices: 85375349--85375416 Score: 61
Period size: 3 Copynumber: 23.0 Consensus size: 3
85375339 ATTTTCGGCA
* * *
85375349 AAG AAG AAG AAG AAA AAG AGAG AAG AAG -GG AAG AAG -GG AAG AAG
1 AAG AAG AAG AAG AAG AAG A-AG AAG AAG AAG AAG AAG AAG AAG AAG
*
85375393 -AG AAG AAG AAG AAAG AAA AAG AAG
1 AAG AAG AAG AAG -AAG AAG AAG AAG
85375417 GAGAGGAGGA
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
2 4 0.08
3 42 0.81
4 6 0.12
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:85375374 original size:16 final size:15
Alignment explanation
Indices: 85375348--85375416 Score: 61
Period size: 16 Copynumber: 4.5 Consensus size: 15
85375338 CATTTTCGGC
85375348 AAAGAAGAAGAAGAA
1 AAAGAAGAAGAAGAA
85375363 AAAGAGAGAAGAAGGGAA
1 AAAGA-AGAAGAA--GAA
* *
85375381 GAAG-GGAAGAAG-A
1 AAAGAAGAAGAAGAA
*
85375394 GAAGAAGAAGAAAGAA
1 AAAGAAGAAG-AAGAA
85375410 AAAGAAG
1 AAAGAAG
85375417 GAGAGGAGGA
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
13 5 0.11
14 5 0.11
15 8 0.18
16 20 0.45
18 6 0.14
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (15 bp):
AAAGAAGAAGAAGAA
Found at i:85375401 original size:8 final size:8
Alignment explanation
Indices: 85375349--85375401 Score: 58
Period size: 8 Copynumber: 6.9 Consensus size: 8
85375339 ATTTTCGGCA
85375349 AAGAAGAAG
1 AAGAAG-AG
85375358 AAGAA-A-
1 AAGAAGAG
85375364 AAG-AGAG
1 AAGAAGAG
*
85375371 AAGAAGGG
1 AAGAAGAG
*
85375379 AAGAAGGG
1 AAGAAGAG
85375387 AAGAAGAG
1 AAGAAGAG
85375395 AAGAAGA
1 AAGAAGA
85375402 AGAAAGAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
5 1 0.03
6 4 0.10
7 4 0.10
8 25 0.64
9 5 0.13
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (8 bp):
AAGAAGAG
Found at i:85375502 original size:14 final size:14
Alignment explanation
Indices: 85375453--85375515 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
85375443 TGAGAGAAGA
85375453 AAAAAGAA--AAAG
1 AAAAAGAAGGAAAG
85375465 AAAAAGAGAAGGAGAAG
1 -AAAA-AGAAGGA-AAG
* * *
85375482 AAGAAGAGGGAAGG
1 AAAAAGAAGGAAAG
85375496 AAAAAGAAGGAAAG
1 AAAAAGAAGGAAAG
85375510 AAAAAG
1 AAAAAG
85375516 GTAATTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
13 4 0.10
14 23 0.57
15 6 0.15
16 4 0.10
17 3 0.08
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (14 bp):
AAAAAGAAGGAAAG
Found at i:85375502 original size:17 final size:17
Alignment explanation
Indices: 85375458--85375515 Score: 50
Period size: 19 Copynumber: 3.4 Consensus size: 17
85375448 GAAGAAAAAA
*
85375458 GAAAAAGAAAAAGAGAAG
1 GAAAAAG-AAGAGAGAAG
*
85375476 GAGAAGAAGAAGAGGGAAG
1 GA-AA-AAGAAGAGAGAAG
85375495 GAAAAAGAAG-GA-AA-
1 GAAAAAGAAGAGAGAAG
85375509 GAAAAAG
1 GAAAAAG
85375516 GTAATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
14 7 0.20
15 2 0.06
16 1 0.03
17 6 0.17
18 4 0.11
19 12 0.34
20 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
GAAAAAGAAGAGAGAAG
Found at i:85375967 original size:30 final size:31
Alignment explanation
Indices: 85375927--85375985 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
85375917 TTTTGTTAAA
*
85375927 ATAATATAAAAAAATAAAATATGAAAATAGT
1 ATAATATAAAAAAATAAAATACGAAAATAGT
*
85375958 ATAAT-TAAAAAAATAAAATCCGAAAATA
1 ATAATATAAAAAAATAAAATACGAAAATA
85375986 AAAAAATACG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (31 bp):
ATAATATAAAAAAATAAAATACGAAAATAGT
Found at i:85376151 original size:3 final size:3
Alignment explanation
Indices: 85376143--85376210 Score: 61
Period size: 3 Copynumber: 23.0 Consensus size: 3
85376133 ATTTTCGGCA
* * *
85376143 AAG AAG AAG AAG AAA AAG AGAG AAG AAG -GG AAG AAG -GG AAG AAG
1 AAG AAG AAG AAG AAG AAG A-AG AAG AAG AAG AAG AAG AAG AAG AAG
*
85376187 -AG AAG AAG AAG AAAG AAA AAG AAG
1 AAG AAG AAG AAG -AAG AAG AAG AAG
85376211 GAGAGGAGGA
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
2 4 0.08
3 42 0.81
4 6 0.12
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:85376168 original size:16 final size:15
Alignment explanation
Indices: 85376142--85376210 Score: 61
Period size: 16 Copynumber: 4.5 Consensus size: 15
85376132 CATTTTCGGC
85376142 AAAGAAGAAGAAGAA
1 AAAGAAGAAGAAGAA
85376157 AAAGAGAGAAGAAGGGAA
1 AAAGA-AGAAGAA--GAA
* *
85376175 GAAG-GGAAGAAG-A
1 AAAGAAGAAGAAGAA
*
85376188 GAAGAAGAAGAAAGAA
1 AAAGAAGAAG-AAGAA
85376204 AAAGAAG
1 AAAGAAG
85376211 GAGAGGAGGA
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
13 5 0.11
14 5 0.11
15 8 0.18
16 20 0.45
18 6 0.14
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (15 bp):
AAAGAAGAAGAAGAA
Found at i:85376195 original size:8 final size:8
Alignment explanation
Indices: 85376143--85376195 Score: 58
Period size: 8 Copynumber: 6.9 Consensus size: 8
85376133 ATTTTCGGCA
85376143 AAGAAGAAG
1 AAGAAG-AG
85376152 AAGAA-A-
1 AAGAAGAG
85376158 AAG-AGAG
1 AAGAAGAG
*
85376165 AAGAAGGG
1 AAGAAGAG
*
85376173 AAGAAGGG
1 AAGAAGAG
85376181 AAGAAGAG
1 AAGAAGAG
85376189 AAGAAGA
1 AAGAAGA
85376196 AGAAAGAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
5 1 0.03
6 4 0.10
7 4 0.10
8 25 0.64
9 5 0.13
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (8 bp):
AAGAAGAG
Found at i:85376195 original size:794 final size:802
Alignment explanation
Indices: 85375290--85376906 Score: 2932
Period size: 824 Copynumber: 2.0 Consensus size: 802
85375280 CATGCAGAGG
85375290 GGTTTTGTTTTTTTGTTTGGGGGACCATAATATATGGTCCCCAAGCTTCATTTTCGGCAAAGAAG
1 GGTTTTGTTTTTTTGTTTGGGGGACCATAATATATGGTCCCCAAGCTTCATTTTCGGCAAAGAAG
85375355 AAGAAGAAAAAGAGAGAAGAAGGGAAGAAGGGAAGAAGAGAAGAAGAAGAAAGAAAAAGAAGGAG
66 AAGAAGAAAAAGAGAGAAGAAGGGAAGAAGGGAAGAAGAGAAGAAGAAGAAAGAAAAAGAAGGAG
85375420 AGGAGGAGAAGGAGGCCTGCGGCTGAGAGAAGAAAAAAGAAAAAGAAAAAGAGAAGGAGAAGAAG
131 AGGAGGAGAAGGAGGCCTGCGGCTGAGAGAAGAAAAAAGAAAAAGAAAAAGAGAAGGAGAAGAAG
85375485 AAGAGGGAAGGAAAAAGAAGGAAAGAAAAAGGTAATTTTTTTTATAAATTTGAG-T-A-A-TTAA
196 AAGAGGGAAGGAAAAAGAAGGAAAGAAAAAGGTAATTTTTTTTATAAATTTGAGATAATAGTTAA
85375546 T-G-TTAG-T-TAT-TTTTATTTTTATTTCTTTGC-AAGGTGTTATTTGGTTAAGAAGAGATATT
261 TAGTTTAGATATATATTTTATTTTTATTTCTTT-CTAAGGTGTTATTTGGTTAAGAAGAGATATT
85375605 AAGGTATGTTCGTATTTATTTTATATTTTCATTGAAGTATTAAGCATTTATGTGTAAAGAATATT
325 AAGGTATGTTCGTATTTATTTTATATTTTCATTGAAGTATTAAGCATTTATGTGTAAAGAATATT
85375670 TTTTTGTTATTATTTTATGTAATTTATTTGTTAAGTGTGTGTTTTAGGTTGTTTAAAAAGATTTT
390 TTTTTGTTATTATTTTATGTAATTTATTTGTTAAGTGTGTGTTTTAGGTTGTTTAAAAAGA-TTT
*
85375735 TTTTAATTTATTTGACTTATTATAGAA-TTTTTTTATTTTTTTATTTTTTATGTGATCGGGGTTT
454 TTTAAATTTATTTGACTTATTATAGAATTTTTTTTATTTTTTTATTTTTTATGTGATCGGGGTTT
85375799 TAAACTTTTTACAAAAAATAGTAAAAAATTTAAAAATTAAAAATATATTAATGAAAAAAATACGA
519 TAAACTTTTTACAAAAAATAGTAAAAAATTTAAAAATTAAAAATATATTAATGAAAAAAATACGA
85375864 GAAGAAATAAAATATGAAAAAAACTTTATTGGGGAAAGTGGTGGTGACGAGTTTTTTGTTAAAAT
584 GAAGAAATAAAATATGAAAAAAACTTTATTGGGGAAAGTGGTGGTGACGAGTTTTTTGTTAAAAT
85375929 AATATAAAAAAATAAAATATGAAAATAGTATAATTAAAAAAATAAAATCCGAAAATAAAAAAATA
649 AATAT-AAAAAATAAAATATGAAAATAGTATAATTAAAAAAATAAAATCCGAAAATAAAAAAATA
85375994 CGAACAAGGTGCCAAAGTCAGGTTACTTATTAAATTAATATAAAAAACTTAAATAATACATTTGA
713 CGAACAAGGTGCCAAAGTCAGGTTACTTATTAAATTAATATAAAAAACTTAAATAATACATTTGA
85376059 AAGATTTTATGCTAAAATAAAATAT
778 AAGATTTTATGCTAAAATAAAATAT
85376084 GGTTTTGTTTTTTTGTTTGGGGGACCATAATATATGGTCCCCAAGCTTCATTTTCGGCAAAGAAG
1 GGTTTTGTTTTTTTGTTTGGGGGACCATAATATATGGTCCCCAAGCTTCATTTTCGGCAAAGAAG
85376149 AAGAAGAAAAAGAGAGAAGAAGGGAAGAAGGGAAGAAGAGAAGAAGAAGAAAGAAAAAGAAGGAG
66 AAGAAGAAAAAGAGAGAAGAAGGGAAGAAGGGAAGAAGAGAAGAAGAAGAAAGAAAAAGAAGGAG
85376214 AGGAGGAGAAGGAGGCCTGCGGCTGAGAGAAGAAAAAAGAAAAAGAAAAAGAGAAGGAGAAGAAG
131 AGGAGGAGAAGGAGGCCTGCGGCTGAGAGAAGAAAAAAGAAAAAGAAAAAGAGAAGGAGAAGAAG
85376279 AAGAGGGAAGGAAAAAGAAGGAAAGAAAAAGGTAATTTTTTTTATAAATTTGAGTAATTAATGTT
196 AAGAGGGAAGGAAAAAGAAGGAAAGAAAAAGGTAATTTTTTTTATAAATTTGAG--A-TAA---T
85376344 AGTTTAATAACGTTTTAGATTTAAATCAGATATAAATTTTATTTTTATTTCTTTCTAAGGTGTTA
255 AG-TTAAT-A-G-TTTAG------AT---ATAT--ATTTTATTTTTATTTCTTTCTAAGGTGTTA
85376409 TTTGGTTAAGAAGAGATATTAAGGTATGTTCGTATTTATTTTATATTTTCATTGAAGTATTAAGC
305 TTTGGTTAAGAAGAGATATTAAGGTATGTTCGTATTTATTTTATATTTTCATTGAAGTATTAAGC
85376474 ATTTATGTGTAAAGAATATTTTTTTGTTATTATTTTATGTAATTTATTTGTTAAGTGTGTGTTTT
370 ATTTATGTGTAAAGAATATTTTTTTGTTATTATTTTATGTAATTTATTTGTTAAGTGTGTGTTTT
85376539 AGGTTGTTTAAAAAGATTTTTTAAATTTATTTGACTTATTATAGAATTTTTTTTATTTTTTTATT
435 AGGTTGTTTAAAAAGATTTTTTAAATTTATTTGACTTATTATAGAATTTTTTTTATTTTTTTATT
85376604 TTTTATGTGATCGGGGTTTTAAACTTTTTACAAAAAATAGTAAAAAATTTAAAAATTAAAAATAT
500 TTTTATGTGATCGGGGTTTTAAACTTTTTACAAAAAATAGTAAAAAATTTAAAAATTAAAAATAT
85376669 ATTAATGAAAAAAATACGAGAAGAAATAAAATATGAAAAAAACTTTATTGGGGAAAGTGGTGGTG
565 ATTAATGAAAAAAATACGAGAAGAAATAAAATATGAAAAAAACTTTATTGGGGAAAGTGGTGGTG
85376734 ACGAGTTTTTTGTTAAAATAATATAAAAAATAAAATATGAAAATAGTATAATTAAAAAAATAAAA
630 ACGAGTTTTTTGTTAAAATAATATAAAAAATAAAATATGAAAATAGTATAATTAAAAAAATAAAA
85376799 TCCGAAAATAAAAAAATACGAACAAGGTGCCAAAGTCAGGTTACTTATTAAATTAATATAAAAAA
695 TCCGAAAATAAAAAAATACGAACAAGGTGCCAAAGTCAGGTTACTTATTAAATTAATATAAAAAA
85376864 CTTAAATAATACATTTGAAAGATTTTATGCTAAAATAAAATAT
760 CTTAAATAATACATTTGAAAGATTTTATGCTAAAATAAAATAT
85376907 CAAAATAATA
Statistics
Matches: 790, Mismatches: 1, Indels: 35
0.96 0.00 0.04
Matches are distributed among these distances:
794 249 0.32
798 1 0.00
799 1 0.00
803 1 0.00
805 5 0.01
808 1 0.00
810 4 0.01
817 1 0.00
821 3 0.00
823 179 0.23
824 345 0.44
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.34
Consensus pattern (802 bp):
GGTTTTGTTTTTTTGTTTGGGGGACCATAATATATGGTCCCCAAGCTTCATTTTCGGCAAAGAAG
AAGAAGAAAAAGAGAGAAGAAGGGAAGAAGGGAAGAAGAGAAGAAGAAGAAAGAAAAAGAAGGAG
AGGAGGAGAAGGAGGCCTGCGGCTGAGAGAAGAAAAAAGAAAAAGAAAAAGAGAAGGAGAAGAAG
AAGAGGGAAGGAAAAAGAAGGAAAGAAAAAGGTAATTTTTTTTATAAATTTGAGATAATAGTTAA
TAGTTTAGATATATATTTTATTTTTATTTCTTTCTAAGGTGTTATTTGGTTAAGAAGAGATATTA
AGGTATGTTCGTATTTATTTTATATTTTCATTGAAGTATTAAGCATTTATGTGTAAAGAATATTT
TTTTGTTATTATTTTATGTAATTTATTTGTTAAGTGTGTGTTTTAGGTTGTTTAAAAAGATTTTT
TAAATTTATTTGACTTATTATAGAATTTTTTTTATTTTTTTATTTTTTATGTGATCGGGGTTTTA
AACTTTTTACAAAAAATAGTAAAAAATTTAAAAATTAAAAATATATTAATGAAAAAAATACGAGA
AGAAATAAAATATGAAAAAAACTTTATTGGGGAAAGTGGTGGTGACGAGTTTTTTGTTAAAATAA
TATAAAAAATAAAATATGAAAATAGTATAATTAAAAAAATAAAATCCGAAAATAAAAAAATACGA
ACAAGGTGCCAAAGTCAGGTTACTTATTAAATTAATATAAAAAACTTAAATAATACATTTGAAAG
ATTTTATGCTAAAATAAAATAT
Found at i:85376296 original size:14 final size:14
Alignment explanation
Indices: 85376247--85376309 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
85376237 TGAGAGAAGA
85376247 AAAAAGAA--AAAG
1 AAAAAGAAGGAAAG
85376259 AAAAAGAGAAGGAGAAG
1 -AAAA-AGAAGGA-AAG
* * *
85376276 AAGAAGAGGGAAGG
1 AAAAAGAAGGAAAG
85376290 AAAAAGAAGGAAAG
1 AAAAAGAAGGAAAG
85376304 AAAAAG
1 AAAAAG
85376310 GTAATTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
13 4 0.10
14 23 0.57
15 6 0.15
16 4 0.10
17 3 0.08
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (14 bp):
AAAAAGAAGGAAAG
Found at i:85376296 original size:17 final size:17
Alignment explanation
Indices: 85376252--85376309 Score: 50
Period size: 19 Copynumber: 3.4 Consensus size: 17
85376242 GAAGAAAAAA
*
85376252 GAAAAAGAAAAAGAGAAG
1 GAAAAAG-AAGAGAGAAG
*
85376270 GAGAAGAAGAAGAGGGAAG
1 GA-AA-AAGAAGAGAGAAG
85376289 GAAAAAGAAG-GA-AA-
1 GAAAAAGAAGAGAGAAG
85376303 GAAAAAG
1 GAAAAAG
85376310 GTAATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
14 7 0.20
15 2 0.06
16 1 0.03
17 6 0.17
18 4 0.11
19 12 0.34
20 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
GAAAAAGAAGAGAGAAG
Found at i:85377312 original size:12 final size:13
Alignment explanation
Indices: 85377297--85377332 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
85377287 TTTTTTTGCT
85377297 AAAATAATATAA-
1 AAAATAATATAAG
*
85377309 AAAATAAAATAAG
1 AAAATAATATAAG
85377322 AAAATAATATA
1 AAAATAATATA
85377333 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (13 bp):
AAAATAATATAAG
Found at i:85377509 original size:145 final size:145
Alignment explanation
Indices: 85377271--85377918 Score: 765
Period size: 155 Copynumber: 4.4 Consensus size: 145
85377261 CTAAGGTGTT
* * *
85377271 ATAATACATTTGAAACTTTTTTTGCTAAAATAATATAAAAAATAAAATAAGAAAATAATATATTT
1 ATAATACATTTGAAACATTATTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTT
* *
85377336 TAAAAAATAATATACGAAAAAAATACGAATAAAGTG-CTAAAATCAGGGATATTTATTGAAA-AA
66 TAAAAAATAAGATACGAAAAAAATACGAATAAAGTGTC-AAAATCAGGGTTATTTATT-AAATAA
*
85377399 ATATAAAAAATACTGAA
129 ATATAAAAAATACTTAA
* *
85377416 ATAATACATTTGAAACATTATGTACTAAAATAATATGAAAAAATAAAATACGAAAATAATATATT
1 ATAATACATTTGAAACATTATTTGCTAAAATAATAT-AAAAAATAAAATACGAAAATAATATATT
*
85377481 TTAAAAAATAAGATAC-AAAAAAATACGAAAAAAGTGTCAAAATCAGGGTTATTTATTAAATTAG
65 TTAAAAAATAAGATACGAAAAAAATACGAATAAAGTGTCAAAATCAGGGTTATTTATTAAA-TA-
* *
85377545 TATAAAAAAATACTTACATAATATA
128 AATATAAAAA-A--TAC-T--TA-A
* *
85377570 CATAATACATTTGAAACATTTTTTGCTAAAATAATATAAAAAAATAAAATAGGAAAATAATATAT
1 -ATAATACATTTGAAACATTATTTGCTAAAATAATAT-AAAAAATAAAATACGAAAATAATATAT
* * *
85377635 TTTAAAAAATAATATACG-AAAAAATATGAATAAAGTG-CTAAAATCAGGGTTATTTATTAAAAA
64 TTTAAAAAATAAGATACGAAAAAAATACGAATAAAGTGTC-AAAATCAGGGTTATTTATTAAATA
** *
85377698 AATATTTAAAACACTTAA
128 AATATAAAAAATACTTAA
* * * * * * * *
85377716 ATAATATATTTAAAACATTATGTACTAAAATAAGGGTTTTAAAATTAAATAATACGAAAGTAATA
1 ATAATACATTTGAAACATTATTTGCTAAAATAA---TATAAAAAAT-AA-AATACGAAAATAATA
*
85377781 TA-TTTAAAAAA-AAGATACGAAAAAAATACGAA-AAAGTGTCAAAATCAGTGTTATTTATTAAA
61 TATTTTAAAAAATAAGATACGAAAAAAATACGAATAAAGTGTCAAAATCAGGGTTATTTATTAAA
* *
85377843 TTAATATAAAAAATACTTAC
126 TAAATATAAAAAATACTTAA
* *
85377863 ATAATACATTTAAAACATT-TTTGCTAAAATAATATAAAAAATAATATACGAAAATA
1 ATAATACATTTGAAACATTATTTGCTAAAATAATATAAAAAATAAAATACGAAAATA
85377919 TTTTACTTAT
Statistics
Matches: 429, Mismatches: 52, Indels: 48
0.81 0.10 0.09
Matches are distributed among these distances:
141 10 0.02
142 2 0.00
143 7 0.02
144 3 0.01
145 97 0.23
146 56 0.13
147 81 0.19
148 26 0.06
149 16 0.04
150 5 0.01
151 1 0.00
152 1 0.00
153 7 0.02
154 3 0.01
155 114 0.27
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.31
Consensus pattern (145 bp):
ATAATACATTTGAAACATTATTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTT
TAAAAAATAAGATACGAAAAAAATACGAATAAAGTGTCAAAATCAGGGTTATTTATTAAATAAAT
ATAAAAAATACTTAA
Found at i:85377656 original size:15 final size:14
Alignment explanation
Indices: 85377597--85377660 Score: 51
Period size: 15 Copynumber: 4.4 Consensus size: 14
85377587 ATTTTTTGCT
85377597 AAAATAATATA-AA
1 AAAATAATATAGAA
*
85377610 AAAATAAAATAGGAA
1 AAAATAATATA-GAA
**
85377625 AATAAT-ATATTTTAA
1 AA-AATAATA-TAGAA
85377640 AAAATAATATACGAA
1 AAAATAATATA-GAA
85377655 AAAATA
1 AAAATA
85377661 TGAATAAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
13 10 0.26
14 4 0.10
15 21 0.54
16 4 0.10
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.25
Consensus pattern (14 bp):
AAAATAATATAGAA
Found at i:85377715 original size:21 final size:22
Alignment explanation
Indices: 85377691--85377732 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
85377681 GGGTTATTTA
85377691 TTAAA-AAAATATTTAAAACAC
1 TTAAATAAAATATTTAAAACAC
*
85377712 TTAAATAATATATTTAAAACA
1 TTAAATAAAATATTTAAAACA
85377733 TTATGTACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (22 bp):
TTAAATAAAATATTTAAAACAC
Found at i:85377825 original size:147 final size:148
Alignment explanation
Indices: 85377617--85377894 Score: 375
Period size: 147 Copynumber: 1.9 Consensus size: 148
85377607 AAAAAAATAA
* * *
85377617 AATAGGAAAATAATATATTTTAAAAAATAATATACGAAAAAATATGAATAAAGTGCTAAAATCAG
1 AATACGAAAATAATATATTTTAAAAAATAAGATACGAAAAAATACGAATAAAGTGCTAAAATCAG
** *
85377682 GGTTATTTATTAAAAAAATATTTAAAACACTTAAATAATATATTTAAAACATTATGTACTAAAAT
66 GGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTAAAACATT-TGTACTAAAAT
85377747 AAGGGTTTTAAAATTAAAT
130 AAGGGTTTTAAAATTAAAT
*
85377766 AATACGAAAGTAATATA-TTTAAAAAA-AAGATACGAAAAAAATACGAA-AAAGTG-TCAAAATC
1 AATACGAAAATAATATATTTTAAAAAATAAGATACG-AAAAAATACGAATAAAGTGCT-AAAATC
* ** * * * *
85377827 AGTGTTATTTATTAAATTAATATAAAAAATACTTACATAATACATTTAAAACATTTTTGCTAAAA
64 AGGGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTAAAACATTTGTACTAAAA
85377892 TAA
129 TAA
85377895 TATAAAAAAT
Statistics
Matches: 113, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
146 12 0.11
147 66 0.58
148 20 0.18
149 15 0.13
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.32
Consensus pattern (148 bp):
AATACGAAAATAATATATTTTAAAAAATAAGATACGAAAAAATACGAATAAAGTGCTAAAATCAG
GGTTATTTATTAAAAAAATATAAAAAACACTTAAATAATACATTTAAAACATTTGTACTAAAATA
AGGGTTTTAAAATTAAAT
Found at i:85377941 original size:300 final size:293
Alignment explanation
Indices: 85377271--85377918 Score: 911
Period size: 300 Copynumber: 2.2 Consensus size: 293
85377261 CTAAGGTGTT
*
85377271 ATAATACATTTGAAACTTTTTTTGCTAAAATAATATAAAAAATAAAATAAGAAAATAATATATTT
1 ATAATACATTTGAAAC-ATTTTTGCTAAAATAATATAAAAAATAAAAT-AGAAAATAATATATTT
*
85377336 TAAAAAATAATATACGAAAAAAATACGAATAAAGTGCTAAAATCAGGGATATTTATTGAAAAAAT
64 TAAAAAATAATATACGAAAAAAATACGAATAAAGTGCTAAAATCAGGGATATTTATTAAAAAAAT
* *
85377401 ATAAAAAATACTGAAATAATACATTTGAAACATTATGTACTAAAATAATATGAAAAAATAAAATA
129 ATAAAAAACACTGAAATAATACATTTAAAACATTATGTACTAAAATAATATGAAAAAATAAAATA
85377466 CGAAAATAATATATTTTAAAAAATAAGATACAAAAAAATACGAAAAAAGTGTCAAAATCAGGGTT
194 CGAAAATAATATATTTTAAAAAATAAGATACAAAAAAATACGAAAAAAGTGTCAAAATCAGGGTT
85377531 ATTTATTAAATTAGTATAAAAAAATACTTACATAATATAC
259 ATTTATTAAATTAG-ATAAAAAAATAC-TAC---ATATAC
85377571 ATAATACATTTGAAACATTTTTTGCTAAAATAATATAAAAAAATAAAATAGGAAAATAATATATT
1 ATAATACATTTGAAACA-TTTTTGCTAAAATAATAT-AAAAAATAAAATA-GAAAATAATATATT
* *
85377636 TTAAAAAATAATATACG-AAAAAATATGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAA
63 TTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCTAAAATCAGGGATATTTATTAAAAAAA
** * * * *
85377700 TATTTAAAACACTTAAATAATATATTTAAAACATTATGTACTAAAATAAGGGTTTTAAAATTAA-
128 TATAAAAAACACTGAAATAATACATTTAAAACATTATGTACTAAAATAA---TATGAAAA--AAT
* *
85377764 ATAATACGAAAGTAATATA-TTTAAAAAA-AAGATACGAAAAAAATACG-AAAAAGTGTCAAAAT
188 AAAATACGAAAATAATATATTTTAAAAAATAAGATAC-AAAAAAATACGAAAAAAGTGTCAAAAT
* *
85377826 CAGTGTTATTTATTAAATTA-ATATAAAAA-A-TAC-T-TAC
252 CAGGGTTATTTATTAAATTAGATAAAAAAATACTACATATAC
* *
85377863 ATAATACATTTAAAACATTTTTGCTAAAATAATATAAAAAATAATATACGAAAATA
1 ATAATACATTTGAAACATTTTTGCTAAAATAATATAAAAAATAAAATA-GAAAATA
85377919 TTTTACTTAT
Statistics
Matches: 320, Mismatches: 19, Indels: 28
0.87 0.05 0.08
Matches are distributed among these distances:
290 19 0.06
291 18 0.06
292 19 0.06
293 1 0.00
297 3 0.01
299 1 0.00
300 130 0.41
301 43 0.13
302 41 0.13
303 26 0.08
304 17 0.05
305 2 0.01
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.31
Consensus pattern (293 bp):
ATAATACATTTGAAACATTTTTGCTAAAATAATATAAAAAATAAAATAGAAAATAATATATTTTA
AAAAATAATATACGAAAAAAATACGAATAAAGTGCTAAAATCAGGGATATTTATTAAAAAAATAT
AAAAAACACTGAAATAATACATTTAAAACATTATGTACTAAAATAATATGAAAAAATAAAATACG
AAAATAATATATTTTAAAAAATAAGATACAAAAAAATACGAAAAAAGTGTCAAAATCAGGGTTAT
TTATTAAATTAGATAAAAAAATACTACATATAC
Found at i:85379884 original size:72 final size:72
Alignment explanation
Indices: 85379792--85379929 Score: 204
Period size: 72 Copynumber: 1.9 Consensus size: 72
85379782 CCGAGCGATC
* * *
85379792 GCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACTATTTCCCGGGCT
1 GCATTCACATTCGACTGATACTTCTTATCATCCAGATTTGACAGGCAATGACAATTTCCCGGGCT
85379857 CGTCATT
66 CGTCATT
* * * * *
85379864 GCATTCACTTTCGGCTGATACTTCTTATCATCCAGATTTTACGGGCAATGACAATTTCTCGGGCT
1 GCATTCACATTCGACTGATACTTCTTATCATCCAGATTTGACAGGCAATGACAATTTCCCGGGCT
85379929 C
66 C
85379930 ATCGGGGGGC
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 58 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (72 bp):
GCATTCACATTCGACTGATACTTCTTATCATCCAGATTTGACAGGCAATGACAATTTCCCGGGCT
CGTCATT
Found at i:85384378 original size:19 final size:18
Alignment explanation
Indices: 85384345--85384397 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
85384335 AAATTATACC
*
85384345 TTCTTTTTTTTCTTCTCT
1 TTCTTTTTTTCCTTCTCT
85384363 TTCTTTTTCTTCCTTCTCT
1 TTCTTTTT-TTCCTTCTCT
*
85384382 TCTCCTTTCTTTCCTT
1 T-T-CTTTTTTTCCTT
85384398 TTATTTTCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 8 0.27
19 10 0.33
20 7 0.23
21 5 0.17
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (18 bp):
TTCTTTTTTTCCTTCTCT
Found at i:85384382 original size:15 final size:15
Alignment explanation
Indices: 85384346--85384374 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
85384336 AATTATACCT
85384346 TCTTT-TTTTTCTTC
1 TCTTTCTTTTTCTTC
85384360 TCTTTCTTTTTCTTC
1 TCTTTCTTTTTCTTC
85384375 CTTCTCTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (15 bp):
TCTTTCTTTTTCTTC
Done.