Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 251 of 290
Found at i:86473568 original size:25 final size:25
Alignment explanation
Indices: 86473490--86473572 Score: 105
Period size: 25 Copynumber: 3.4 Consensus size: 25
86473480 GTGTCCCAAT
**
86473490 TATGGCTCTTATGAGCTTCCTGTTA
1 TATGGCTCACATGAGCTTCCTGTTA
* * * *
86473515 TATAGCCCAGATAAGCTTCCTGTTA
1 TATGGCTCACATGAGCTTCCTGTTA
86473540 TATGGCTCACATGAGCTTCCTGTTA
1 TATGGCTCACATGAGCTTCCTGTTA
86473565 TAT-GCTCA
1 TATGGCTCA
86473573 AGAGAGTGCT
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
24 5 0.10
25 44 0.90
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (25 bp):
TATGGCTCACATGAGCTTCCTGTTA
Found at i:86476496 original size:19 final size:19
Alignment explanation
Indices: 86476444--86476499 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
86476434 AAAATGTATA
86476444 AATAAATCAAAGAAAAATGT
1 AATAAATCAAAG-AAAATGT
*
86476464 AA-AAAT-AAA-TAAATG-
1 AATAAATCAAAGAAAATGT
86476479 AGATAAATCAAAGAAAATGT
1 A-ATAAATCAAAGAAAATGT
86476499 A
1 A
86476500 GAAATAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
15 1 0.03
16 6 0.21
17 4 0.14
18 6 0.21
19 9 0.31
20 3 0.10
ACGTcount: A:0.66, C:0.04, G:0.11, T:0.20
Consensus pattern (19 bp):
AATAAATCAAAGAAAATGT
Found at i:86481120 original size:134 final size:134
Alignment explanation
Indices: 86480885--86481330 Score: 504
Period size: 134 Copynumber: 3.3 Consensus size: 134
86480875 TAAATTGACA
* * * *
86480885 AACTCTAATTGAATTGTGCATGATCATAAATCAATAAACTTAAGCTATGATCATAAACCAATGAG
1 AACTCTAATTGAATTGTTCATGATCATAAATCAATGAACTTAAGCTATGATCATAAACTAGTGAG
* * * **
86480950 CTTTAATTATA-CGAGTTGTGATCATAAATCAACAAACAATTTGAATGGAGTTGTGATCATAAAT
66 ATTTAATAATATC-AATTGTGATCATAAATCAACAAACTGTTTGAATGGAGTTGTGATCATAAAT
86481014 CGGGG
130 CGGGG
* * * *
86481019 AACTCTAATTGAATTGTTCATGATCGTAAATCAATGAACTTATGTTGTGATCATAAACTAGTGAG
1 AACTCTAATTGAATTGTTCATGATCATAAATCAATGAACTTAAGCTATGATCATAAACTAGTGAG
* * * * *
86481084 ATTTAATAATATCAATTTTGATCATACATCAGCAAACTGTTTGAATGGAATTGTGATCGTAAATC
66 ATTTAATAATATCAATTGTGATCATAAATCAACAAACTGTTTGAATGGAGTTGTGATCATAAATC
*
86481149 AGGG
131 GGGG
* * ** * *
86481153 AACTCTAAGTGGATCATTCATGATCATAAATTAATGAACTTAAGCTATAATCATAAA-TCAGTGA
1 AACTCTAATTGAATTGTTCATGATCATAAATCAATGAACTTAAGCTATGATCATAAACT-AGTGA
* * * * * *
86481217 -ACTTTAATAATATCGATTGTGATCGTAAATCAAAAAATTGTTTGAATGTAGTTG-CATTCATAA
65 GA-TTTAATAATATCAATTGTGATCATAAATCAACAAACTGTTTGAATGGAGTTGTGA-TCATAA
* ***
86481280 ATTGAAT
128 ATCGGGG
*
86481287 AACTCTAATTGAATTGTTCATTATCATAAATCAATGAACTTAAG
1 AACTCTAATTGAATTGTTCATGATCATAAATCAATGAACTTAAG
86481331 GTGTGATTGT
Statistics
Matches: 257, Mismatches: 51, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
133 3 0.01
134 253 0.98
135 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (134 bp):
AACTCTAATTGAATTGTTCATGATCATAAATCAATGAACTTAAGCTATGATCATAAACTAGTGAG
ATTTAATAATATCAATTGTGATCATAAATCAACAAACTGTTTGAATGGAGTTGTGATCATAAATC
GGGG
Found at i:86481343 original size:98 final size:98
Alignment explanation
Indices: 86481234--86481444 Score: 271
Period size: 98 Copynumber: 2.2 Consensus size: 98
86481224 TAATATCGAT
* * * * * *
86481234 TGTGATCGTAAATCAAAAAATTGTTTGAATGTAGTTGCATTCATAAATTGAA-TAACTCTAATTG
1 TGTGATCGTAAATCAAAAAACTGTTTGAATGGAGTTGCAATCATAAA-TCAACGAACTCTAAGTG
* * *
86481298 AATTGTTCATTATCATAAATCAATGAACTTAAGG
65 AATCGTTCATGATCATAAATCAATGAACATAAGG
* * * *
86481332 TGTGATTGTAAATCAACAAACTGTTTGACTGGAGTTGCAATCGTAAATCAACGAACTCTAAGTGA
1 TGTGATCGTAAATCAAAAAACTGTTTGAATGGAGTTGCAATCATAAATCAACGAACTCTAAGTGA
* *
86481397 ATCGTTCATGATCGTAAATCAATGAACATAAGT
66 ATCGTTCATGATCATAAATCAATGAACATAAGG
86481430 TGTGATCGTAAATCA
1 TGTGATCGTAAATCA
86481445 GCAAGCTTTA
Statistics
Matches: 96, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
97 3 0.03
98 93 0.97
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (98 bp):
TGTGATCGTAAATCAAAAAACTGTTTGAATGGAGTTGCAATCATAAATCAACGAACTCTAAGTGA
ATCGTTCATGATCATAAATCAATGAACATAAGG
Found at i:86493673 original size:49 final size:50
Alignment explanation
Indices: 86493620--86493744 Score: 189
Period size: 50 Copynumber: 2.5 Consensus size: 50
86493610 CTAGTACGCA
* ** *
86493620 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACG
* *
86493669 TAGTAGCCTGCACCTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACG
86493719 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
86493745 NAAGTTGTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
49 30 0.44
50 38 0.56
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACG
Found at i:86495950 original size:21 final size:21
Alignment explanation
Indices: 86495911--86495969 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
86495901 CCTGATCAGT
* *
86495911 AAACAACACATAA-GTGCCTG
1 AAACGACACACAAGGTGCCTG
*
86495931 AAACGACACACGAGGTGCCTG
1 AAACGACACACAAGGTGCCTG
*
86495952 ATACGACACACAAGGTGC
1 AAACGACACACAAGGTGC
86495970 TAAAATACGA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
20 10 0.30
21 23 0.70
ACGTcount: A:0.39, C:0.27, G:0.22, T:0.12
Consensus pattern (21 bp):
AAACGACACACAAGGTGCCTG
Found at i:86496004 original size:23 final size:23
Alignment explanation
Indices: 86495952--86496016 Score: 87
Period size: 23 Copynumber: 2.9 Consensus size: 23
86495942 GAGGTGCCTG
* *
86495952 ATACGACACACAAGGTG-CTAAA
1 ATACGACACATAAAGTGCCTAAA
*
86495974 ATACGACACATAAAGTGCCTAAT
1 ATACGACACATAAAGTGCCTAAA
*
86495997 ATATGACACATAAAGTGCCT
1 ATACGACACATAAAGTGCCT
86496017 GTTCGACAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
22 15 0.39
23 23 0.61
ACGTcount: A:0.43, C:0.22, G:0.15, T:0.20
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTAAA
Found at i:86497339 original size:2 final size:2
Alignment explanation
Indices: 86497326--86497356 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
86497316 TTTTATATCT
*
86497326 TA TA TC TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86497357 TAGTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86502077 original size:68 final size:68
Alignment explanation
Indices: 86501997--86502133 Score: 265
Period size: 68 Copynumber: 2.0 Consensus size: 68
86501987 TTCAACAAAT
86501997 TATGGCTATCTCTCTAGATTCTTAGTTAAAGATATCGGTTGCACAAAAAAAATAAGGTATTGTGA
1 TATGGCTATCTCTCTAGATTCTTAGTTAAAGATATCGGTTGCACAAAAAAAATAAGGTATTGTGA
86502062 TGG
66 TGG
*
86502065 TATGGCTGTCTCTCTAGATTCTTAGTTAAAGATATCGGTTGCACAAAAAAAATAAGGTATTGTGA
1 TATGGCTATCTCTCTAGATTCTTAGTTAAAGATATCGGTTGCACAAAAAAAATAAGGTATTGTGA
86502130 TGG
66 TGG
86502133 T
1 T
86502134 GACACCACCT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (68 bp):
TATGGCTATCTCTCTAGATTCTTAGTTAAAGATATCGGTTGCACAAAAAAAATAAGGTATTGTGA
TGG
Found at i:86502961 original size:131 final size:131
Alignment explanation
Indices: 86502727--86503658 Score: 1486
Period size: 131 Copynumber: 7.1 Consensus size: 131
86502717 GTGAATTCAC
* * * *
86502727 AGATCTTGTCTCCCTGAAATTGCAGTGGAACAGATCGAAGACGACGAATCTTGTCTCCCTAAGCA
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATTTTGTCTCCCTAACCA
* * * * *
86502792 ATAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGTAGAAATGGAGTAGGCTGAAAATTG
66 GTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTG
86502857 T
131 T
* * *
86502858 AGATCTTGTCTCCCTGAAGTTGTAGTGAAACAGATCGAAGACTGCGAATTTTGTCTCCCTAACCA
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATTTTGTCTCCCTAACCA
86502923 GTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTG
66 GTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTG
86502988 T
131 T
* * *
86502989 AGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATTGAAGACGGCGAATCTTGTCTCCCTAAGCA
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATTTTGTCTCCCTAACCA
*
86503054 GTCGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTG
66 GTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTG
86503119 T
131 T
* * * * * *
86503120 AGATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAATATGGCGAATCTTGTCTCCCTAAGCA
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATTTTGTCTCCCTAACCA
*
86503185 GTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCGGTAGTGGAGTAGGCTGAAGATTG
66 GTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTG
86503250 T
131 T
* ** *
86503251 AGATCTTATCTCCCTGAAGTTGCAGTAAAACAGATCGAAGACGGCGAATTCTGTCTCCCTAACCA
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATTTTGTCTCCCTAACCA
*
86503316 GTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAATAGGCTGAAGATTG
66 GTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTG
86503381 T
131 T
** *
86503382 AGATCTTGTCTCCCTGAAGTTGCAGTAAAACAGATCGAAGACGGCGAATTCTGTCTCCCTAACCA
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATTTTGTCTCCCTAACCA
* * *
86503447 GTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAAGCTGAAAATTA
66 GTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTG
86503512 T
131 T
* * * * * *
86503513 AGATCTTGTCCCCCTGAAGTTACAGAGGAACAGATCGAAGACGGCAAATTTTGTCTTCCTAACTA
1 AGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATTTTGTCTCCCTAACCA
* *
86503578 TTAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTG
66 GTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTG
86503643 T
131 T
86503644 AGATCTTGTCTCCCT
1 AGATCTTGTCTCCCT
86503659 AAGCAATAGT
Statistics
Matches: 747, Mismatches: 54, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
131 747 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (131 bp):
AGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATTTTGTCTCCCTAACCA
GTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTG
T
Found at i:86502967 original size:42 final size:43
Alignment explanation
Indices: 86502911--86503365 Score: 172
Period size: 42 Copynumber: 10.5 Consensus size: 43
86502901 GCGAATTTTG
* *
86502911 TCTCCCTAACCAGTAGTGGAGCAGATTTAAG-CCACCATCCTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGTCCACCATCCTA
* ** ** * * *
86502953 TCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTA-GATCTTG
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAG--TCCACCATCCTA
** * * * ** * * *
86502997 TCTCCCTGAAGTTGCAGTGGAACAGATTGAAGACGGCGAATCTTG
1 TCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGTCCAC-CATCCTA
* *
86503042 TCTCCCTAAGCAGTCGTGGAGCAGATTTAAG-CCACCATCCTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGTCCACCATCCTA
* ** ** * *
86503084 TCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTA-GATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAG--TCCACCATCCTA
** * * * * * *
86503128 TCTCCCTGAAGTTGCAGTGGAACAGATTGAATATGGCGA--ATCTTG
1 TCTCCCT-AAGCAGTAGTGGAGCAGATTG-A-A-GTCCACCATCCTA
*
86503173 TCTCCCTAAGCAGTAGTGGAGCAGATTTAAG-CCACCATCCTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGTCCACCATCCTA
* * ** ** * *
86503215 TCTCCCTAAGCGGTAGTGGAGTAGGCTGAAGATTGTA-GATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAG--TCCACCATCCTA
** * ** * * * ** * * *
86503259 TCTCCCTGAAGTTGCAGTAAAACAGATCGAAGACGGCGAATTCTG
1 TCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGTCCAC-CATCCTA
* *
86503304 TCTCCCTAACCAGTAGTGGAGCAGATTTAAG-CCACCATCCTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGTCCACCATCCTA
86503346 TCTCCCTAAGCAGTAGTGGA
1 TCTCCCTAAGCAGTAGTGGA
86503366 ATAGGCTGAA
Statistics
Matches: 289, Mismatches: 103, Indels: 42
0.67 0.24 0.10
Matches are distributed among these distances:
40 2 0.01
41 1 0.00
42 110 0.38
43 5 0.02
44 84 0.29
45 83 0.29
46 2 0.01
47 1 0.00
48 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (43 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGTCCACCATCCTA
Found at i:86503028 original size:45 final size:43
Alignment explanation
Indices: 86502951--86503265 Score: 127
Period size: 44 Copynumber: 7.2 Consensus size: 43
86502941 GCCACCATCC
* ** **
86502951 TATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTAGATCT
1 TATCTCCCTAAGCAGCAGTGGAACAGATTGAAGA-TGTAGATCT
* ** * **
86502995 TGTCTCCCTGAAGTTGCAGTGGAACAGATTGAAGACGGCGAATCT
1 TATCTCCCT-AAGCAGCAGTGGAACAGATTGAAGATGTAG-ATCT
* * * ** * *
86503040 TGTCTCCCTAAGCAGTC-GTGGAGCAGATTTAAG--CCACCATCC
1 TATCTCCCTAAGCAG-CAGTGGAACAGATTGAAGATGTA-GATCT
* ** **
86503082 TATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTAGATCT
1 TATCTCCCTAAGCAGCAGTGGAACAGATTGAAGA-TGTAGATCT
** * **
86503126 TATCTCCCTGAAGTTGCAGTGGAACAGATTGAATATGGCGAATCT
1 TATCTCCCT-AAGCAGCAGTGGAACAGATTGAAGATGTAG-ATCT
* * * * ** * *
86503171 TGTCTCCCTAAGCAGTAGTGGAGCAGATTTAAG--CCACCATCC
1 TATCTCCCTAAGCAGCAGTGGAACAGATTGAAGATGTA-GATCT
* * ** **
86503213 TATCTCCCTAAGCGGTAGTGGAGTAGGCTGAAGATTGTAGATCT
1 TATCTCCCTAAGCAGCAGTGGAACAGATTGAAGA-TGTAGATCT
86503257 TATCTCCCT
1 TATCTCCCT
86503266 GAAGTTGCAG
Statistics
Matches: 195, Mismatches: 62, Indels: 28
0.68 0.22 0.10
Matches are distributed among these distances:
42 59 0.30
44 73 0.37
45 63 0.32
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (43 bp):
TATCTCCCTAAGCAGCAGTGGAACAGATTGAAGATGTAGATCT
Found at i:86504066 original size:45 final size:44
Alignment explanation
Indices: 86503898--86504066 Score: 121
Period size: 44 Copynumber: 3.8 Consensus size: 44
86503888 AAACTATAAG
* * * **
86503898 TCTTATCTCCCTAAAGTTGCA-TGGAGCAGATTGAAGCCACAAA
1 TCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGATACAAA
* * * * * *
86503941 CCTTA-TCCCCTTGAAGTTGCAGTGGGACA-AGTTGAAGTTACGAG
1 TCTTATTTCCC-TGAAGTTGCAGTGGAACAGA-TTGAAGATACAAA
* * * * *
86503985 TCTTATCTCCCTGAAATTACAGT-GAAGTAGACTGAAGATAGCAAA
1 TCTTATTTCCCTGAAGTTGCAGTGGAA-CAGATTGAAGATA-CAAA
*
86504030 TCTCATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG
1 TCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG
86504067 CTACCAGTAC
Statistics
Matches: 91, Mismatches: 27, Indels: 14
0.69 0.20 0.11
Matches are distributed among these distances:
42 3 0.03
43 16 0.18
44 36 0.40
45 33 0.36
46 3 0.03
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (44 bp):
TCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGATACAAA
Found at i:86505775 original size:22 final size:21
Alignment explanation
Indices: 86505738--86505779 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
86505728 TACATACATT
86505738 ATTATATTGTCATCTTATTTTC
1 ATTATATTGTCATCTT-TTTTC
86505760 ATTATATTGT-ATTCTTTTTT
1 ATTATATTGTCA-TCTTTTTT
86505780 GTTTTCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.21, C:0.10, G:0.05, T:0.64
Consensus pattern (21 bp):
ATTATATTGTCATCTTTTTTC
Found at i:86505970 original size:24 final size:24
Alignment explanation
Indices: 86505818--86505983 Score: 86
Period size: 27 Copynumber: 6.5 Consensus size: 24
86505808 ATCTTTCATA
*
86505818 ATATTTATTTTGAACAGTT-TTATTAT
1 ATATTTATTTT-AA-A-TTATTTTTAT
* * *
86505844 -TATTTATTTGAAGTTTTTTTCATAT
1 ATATTTATTTTAAATTATTTT--TAT
*
86505869 GATATTTGTTTTAAATTATTTTTTAAT
1 -ATATTTATTTTAAATTA-TTTTT-AT
* *
86505896 ATATGTCATTTTGAATTATTTTATAT
1 ATAT-TTATTTTAAATTATTTT-TAT
* * *
86505922 ATATTAATTACTTCACATTGTTTTTTAT
1 ATATTTATT--TT-AAATT-ATTTTTAT
*
86505950 TTATTTATTTTAAATTATTTTTAT
1 ATATTTATTTTAAATTATTTTTAT
86505974 ATA-TTATTTT
1 ATATTTATTTT
86505984 TGAACTATTT
Statistics
Matches: 108, Mismatches: 19, Indels: 29
0.69 0.12 0.19
Matches are distributed among these distances:
22 2 0.02
23 10 0.09
24 11 0.10
25 20 0.19
26 17 0.16
27 27 0.25
28 17 0.16
29 4 0.04
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.62
Consensus pattern (24 bp):
ATATTTATTTTAAATTATTTTTAT
Found at i:86505978 original size:28 final size:27
Alignment explanation
Indices: 86505835--86505982 Score: 112
Period size: 27 Copynumber: 5.6 Consensus size: 27
86505825 TTTTGAACAG
* *
86505835 TTTTAT-TATTATTTATTTGAAGTT-T
1 TTTTATATATTATTTATTTTAAATTAT
*
86505860 TTTTCATATGA-TATTTGTTTTAAATTAT
1 TTTT-ATAT-ATTATTTATTTTAAATTAT
* *
86505888 TTTT-TA-ATATATGTCATTTTGAATTAT
1 TTTTATATAT-TAT-TTATTTTAAATTAT
* * * * *
86505915 TTTATATATATTAATTACTTCACATTGT
1 TTT-TATATATTATTTATTTTAAATTAT
86505943 TTTT-TAT-TTATTTATTTTAAATTAT
1 TTTTATATATTATTTATTTTAAATTAT
86505968 TTTTATATATTATTT
1 TTTTATATATTATTT
86505983 TTGAACTATT
Statistics
Matches: 93, Mismatches: 18, Indels: 22
0.70 0.14 0.17
Matches are distributed among these distances:
24 1 0.01
25 21 0.23
26 13 0.14
27 34 0.37
28 18 0.19
29 4 0.04
30 2 0.02
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (27 bp):
TTTTATATATTATTTATTTTAAATTAT
Found at i:86505984 original size:24 final size:25
Alignment explanation
Indices: 86505877--86506006 Score: 70
Period size: 24 Copynumber: 5.0 Consensus size: 25
86505867 ATGATATTTG
*
86505877 TTTTAAATTATTTTTTAATATATGTCA-
1 TTTTAAATTA-TTTTT-ATATAT-TAAT
*
86505904 TTTTGAATTATTTTATATATATTAAT
1 TTTTAAATTATTTT-TATATATTAAT
* * * * *
86505930 TACTTCACATTGTTTTTTATTTATTTA-
1 T--TTTAAATT-ATTTTTATATATTAAT
86505957 TTTTAAATTATTTTTATATATT-AT
1 TTTTAAATTATTTTTATATATTAAT
* * *
86505981 TTTTGAACTATTTATTAT-TATAAAT
1 TTTTAAATTATTT-TTATATATTAAT
86506006 T
1 T
86506007 CATATAATTC
Statistics
Matches: 80, Mismatches: 15, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
23 1 0.01
24 25 0.31
25 15 0.19
26 11 0.14
27 11 0.14
28 13 0.16
29 4 0.05
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.62
Consensus pattern (25 bp):
TTTTAAATTATTTTTATATATTAAT
Found at i:86506143 original size:35 final size:33
Alignment explanation
Indices: 86506094--86506161 Score: 91
Period size: 35 Copynumber: 2.0 Consensus size: 33
86506084 TACATTATTT
86506094 TTTTATATACATTATTTATGTTAAATTGTTTTTTA
1 TTTTATATACATTATTTAT-TTAAATT-TTTTTTA
* * *
86506129 TTTTATGTATATTATTTATTTTAATTTTTTTTA
1 TTTTATATACATTATTTATTTAAATTTTTTTTA
86506162 CATATTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 7 0.23
34 6 0.20
35 17 0.57
ACGTcount: A:0.26, C:0.01, G:0.04, T:0.68
Consensus pattern (33 bp):
TTTTATATACATTATTTATTTAAATTTTTTTTA
Found at i:86506158 original size:26 final size:27
Alignment explanation
Indices: 86506137--86506187 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
86506127 TATTTTATGT
* *
86506137 ATATTATTTATTTTA-ATTTTTTTTAC
1 ATATTATTTATTTTAGACTTTTTATAC
86506163 ATATTATTTATTTTAGACTTTTTAT
1 ATATTATTTATTTTAGACTTTTTAT
86506188 TAATGATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (27 bp):
ATATTATTTATTTTAGACTTTTTATAC
Found at i:86506222 original size:24 final size:25
Alignment explanation
Indices: 86506195--86506249 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
86506185 TATTAATGAT
* *
86506195 TTTAAATTG-TTTTGTATTATTTAC
1 TTTAAATTGCTTTTATAGTATTTAC
*
86506219 TTTAAATTGCTTTTATAGTATTTAT
1 TTTAAATTGCTTTTATAGTATTTAC
86506244 TTTAAA
1 TTTAAA
86506250 CCTTTTATGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 9 0.33
25 18 0.67
ACGTcount: A:0.29, C:0.04, G:0.07, T:0.60
Consensus pattern (25 bp):
TTTAAATTGCTTTTATAGTATTTAC
Found at i:86508418 original size:19 final size:18
Alignment explanation
Indices: 86508385--86508420 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
86508375 TTATTATTTT
*
86508385 TAAAATTTATAATTAAAA
1 TAAAATTTAAAATTAAAA
86508403 TAAAATTTAAATATTAAA
1 TAAAATTTAAA-ATTAAA
86508421 TAGTTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAAAATTAAAA
Found at i:86509367 original size:39 final size:40
Alignment explanation
Indices: 86509322--86509408 Score: 140
Period size: 39 Copynumber: 2.2 Consensus size: 40
86509312 AAAATTTATA
*
86509322 TTTAATACAATAAAATATTTATTATATTTAT-TTGTGTTT
1 TTTAATACAATAAAATATTTATTATATTTATGTAGTGTTT
*
86509361 TTTAATATAATAAAATATTTATTATATTTATGGTAGTGTTT
1 TTTAATACAATAAAATATTTATTATATTTAT-GTAGTGTTT
86509402 TTTAATA
1 TTTAATA
86509409 TAAATACTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 30 0.68
41 14 0.32
ACGTcount: A:0.37, C:0.01, G:0.07, T:0.55
Consensus pattern (40 bp):
TTTAATACAATAAAATATTTATTATATTTATGTAGTGTTT
Found at i:86512160 original size:9 final size:9
Alignment explanation
Indices: 86512148--86512178 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
86512138 CAAAGGTAGC
86512148 TTTTTATTA
1 TTTTTATTA
86512157 TTTTTATTA
1 TTTTTATTA
86512166 -TTTTATTA
1 TTTTTATTA
86512174 TTTTT
1 TTTTT
86512179 GTTTTCATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTATTA
Found at i:86512286 original size:11 final size:10
Alignment explanation
Indices: 86512261--86512285 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
86512251 GTTCCCTTTC
86512261 TTTTTGGCCA
1 TTTTTGGCCA
86512271 TTTTTGGCCA
1 TTTTTGGCCA
86512281 TTTTT
1 TTTTT
86512286 TCTTAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.16, G:0.16, T:0.60
Consensus pattern (10 bp):
TTTTTGGCCA
Found at i:86513755 original size:38 final size:40
Alignment explanation
Indices: 86513664--86513758 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 40
86513654 TGGTACCAAT
* * * *
86513664 TGGTGTGTAGGGTTAGATGGGTTGATTTTATCCCCATACT
1 TGGTGTGTAGGGTTGGATGGGTCGATTCTATCCCCATACA
*
86513704 TGGTGTGTAGGGTTGGGTGGGTCGATTCTAT-CCC-TACA
1 TGGTGTGTAGGGTTGGATGGGTCGATTCTATCCCCATACA
86513742 TGGTGTGCT-GGGTTGGA
1 TGGTGTG-TAGGGTTGGA
86513759 CGGAGATGGT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
38 17 0.35
39 4 0.08
40 27 0.56
ACGTcount: A:0.14, C:0.13, G:0.37, T:0.37
Consensus pattern (40 bp):
TGGTGTGTAGGGTTGGATGGGTCGATTCTATCCCCATACA
Found at i:86516592 original size:40 final size:40
Alignment explanation
Indices: 86516537--86516616 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
86516527 GCTCACTCCC
86516537 CCATATAGTGTTTAACTTTTCAAGTAAACCTCGAAACTAG
1 CCATATAGTGTTTAACTTTTCAAGTAAACCTCGAAACTAG
86516577 CCATATAGTGTTTAACTTTTCAAGTAAACCTCGAAACTAG
1 CCATATAGTGTTTAACTTTTCAAGTAAACCTCGAAACTAG
86516617 GACCGAACCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (40 bp):
CCATATAGTGTTTAACTTTTCAAGTAAACCTCGAAACTAG
Found at i:86517854 original size:6 final size:6
Alignment explanation
Indices: 86517829--86517876 Score: 62
Period size: 6 Copynumber: 8.0 Consensus size: 6
86517819 GTTAATGTGT
**
86517829 TAAAAA TATTAA TGAAAAA TAAAAA TAAAAA TAAAAA TAAAAA -AAAAA
1 TAAAAA TAAAAA T-AAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
86517877 GCTTAAAACA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
5 5 0.14
6 28 0.76
7 4 0.11
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:86517992 original size:27 final size:25
Alignment explanation
Indices: 86517933--86517992 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
86517923 ATCGAATCCA
*
86517933 AAATTCATAAATATAAAAAAAACCT
1 AAATTCATAAATATAAAAAAAACAT
*
86517958 AAAATCATAAATATTAAAAAAAAGCAT
1 AAATTCATAAATA-TAAAAAAAA-CAT
*
86517985 ATATTCAT
1 AAATTCAT
86517993 TGATTAATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 12 0.41
26 9 0.31
27 8 0.28
ACGTcount: A:0.62, C:0.10, G:0.02, T:0.27
Consensus pattern (25 bp):
AAATTCATAAATATAAAAAAAACAT
Found at i:86518650 original size:7 final size:7
Alignment explanation
Indices: 86518640--86518666 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
86518630 TATAATAATT
86518640 AATTAAA
1 AATTAAA
86518647 AATTAAA
1 AATTAAA
86518654 AATTAAA
1 AATTAAA
86518661 AATTAA
1 AATTAA
86518667 TTTATTAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
AATTAAA
Found at i:86538992 original size:48 final size:47
Alignment explanation
Indices: 86538935--86539164 Score: 237
Period size: 48 Copynumber: 4.8 Consensus size: 47
86538925 CTCATGTCGG
* * * *
86538935 TGCCGATGCCATGTCCCAGACATGATCTTATACGGGACGTCATATCAA
1 TGCCGATGCCATGTCCTAGACATGGTCTTACACGGGAC-ACATATCAA
* *
86538983 TGCCAATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCAA
1 TGCCGATGCCATGTCCTAGACATGGTCTTACAC-GGGACACATATCAA
* * * *
86539031 CGCCAATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCAA
1 TGCCGATGCCATGTCCTAGACATGGTCTTACAC-GGGACACATATCAA
* * * * * * * *
86539079 CGCCGGTGCCATGTCCCAGACATGGTCTTATA-GTGGCTCTCATCTCGGA
1 TGCCGATGCCATGTCCTAGACATGGTCTTACACG-GG-ACACATATC-AA
86539128 TGCCGATGCCATGTCCTAGACATGGTCTTACACGGGA
1 TGCCGATGCCATGTCCTAGACATGGTCTTACACGGGA
86539165 TCTCATTAAT
Statistics
Matches: 154, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
47 1 0.01
48 117 0.76
49 35 0.23
50 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (47 bp):
TGCCGATGCCATGTCCTAGACATGGTCTTACACGGGACACATATCAA
Found at i:86539040 original size:96 final size:96
Alignment explanation
Indices: 86538940--86539164 Score: 263
Period size: 96 Copynumber: 2.3 Consensus size: 96
86538930 GTCGGTGCCG
* * * * * *
86538940 ATGCCATGTCCCAGACATGATCTTATACGGGACGTCATATCAATGCCAATGCCATGTCCTAGACA
1 ATGCCATGTCCTAGACATGGTCTTACACGGGAC-ACATATCAACGCCAATGCCATGTCCCAGACA
86539005 TGGTCTTACACTGGCACACATATC-AACGCCA
65 TGGTCTTACACTGGCACACATATCGAACGCCA
* * **
86539036 ATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCAACGCCGGTGCCATGTCCCAGACA
1 ATGCCATGTCCTAGACATGGTCTTACAC-GGGACACATATCAACGCCAATGCCATGTCCCAGACA
* * * * * * * *
86539101 TGGTCTTATAGTGGCTCTCATCTCGGATGCCG
65 TGGTCTTACACTGGCACACATATCGAACGCCA
86539133 ATGCCATGTCCTAGACATGGTCTTACACGGGA
1 ATGCCATGTCCTAGACATGGTCTTACACGGGA
86539165 TCTCATTAAT
Statistics
Matches: 107, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
96 72 0.67
97 35 0.33
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (96 bp):
ATGCCATGTCCTAGACATGGTCTTACACGGGACACATATCAACGCCAATGCCATGTCCCAGACAT
GGTCTTACACTGGCACACATATCGAACGCCA
Found at i:86542115 original size:21 final size:20
Alignment explanation
Indices: 86542084--86542135 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
86542074 TTCAAATTTT
*
86542084 AATT-ATTTAATTGCAA-TA
1 AATTAATTTAATTACAATTA
86542102 AATTGAATATTAA-TACAATTA
1 AATT-AAT-TTAATTACAATTA
86542123 AATTAATTTAATT
1 AATTAATTTAATT
86542136 TCTAAATAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
18 4 0.14
19 4 0.14
20 10 0.36
21 10 0.36
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (20 bp):
AATTAATTTAATTACAATTA
Found at i:86542439 original size:33 final size:33
Alignment explanation
Indices: 86542397--86542462 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
86542387 GGATACTATT
*
86542397 ATGAGATATTTTCTCTTAGCAATTTGATTCCTA
1 ATGAGATATTGTCTCTTAGCAATTTGATTCCTA
*
86542430 ATGAGATATTGTCTTTTAGCAATTTGATTCCTA
1 ATGAGATATTGTCTCTTAGCAATTTGATTCCTA
86542463 CATAACTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (33 bp):
ATGAGATATTGTCTCTTAGCAATTTGATTCCTA
Found at i:86544982 original size:30 final size:30
Alignment explanation
Indices: 86544941--86545002 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
86544931 GGCAAAAAAA
*
86544941 CTCTTAAATTTCTCCCTAAATTTCTCAAAG
1 CTCTCAAATTTCTCCCTAAATTTCTCAAAG
**
86544971 CTCTCAAATTTCTCTTTAAATTTCTCAAAG
1 CTCTCAAATTTCTCCCTAAATTTCTCAAAG
86545001 CT
1 CT
86545003 TTCTTTAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.29, C:0.26, G:0.03, T:0.42
Consensus pattern (30 bp):
CTCTCAAATTTCTCCCTAAATTTCTCAAAG
Found at i:86546747 original size:18 final size:18
Alignment explanation
Indices: 86546721--86546755 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
86546711 ACGTGCGTAT
*
86546721 CCTAGCCCTTATATGTTC
1 CCTAACCCTTATATGTTC
86546739 CCTAACCCTTATATGTT
1 CCTAACCCTTATATGTT
86546756 TCATTTTCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.31, G:0.09, T:0.40
Consensus pattern (18 bp):
CCTAACCCTTATATGTTC
Found at i:86547257 original size:58 final size:58
Alignment explanation
Indices: 86547143--86547261 Score: 136
Period size: 58 Copynumber: 2.1 Consensus size: 58
86547133 ATTTGTACAG
* * ****
86547143 AATTTTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTTTAATATTTTAATAGTA
1 AATTTTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGAAATAG-A
86547202 AATTATTTTTATATT-TTT-ATTTAATAAAATAGAAA-TTCTTTTGAATAAGGAAATAGA
1 AATT-TTTTTATATTGTTTCATTTAATAAAATA-AAAGTTCTTTTGAATAAGGAAATAGA
86547259 AAT
1 AAT
86547262 AATTCAACAT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
57 4 0.08
58 28 0.54
59 10 0.19
60 10 0.19
ACGTcount: A:0.41, C:0.02, G:0.08, T:0.50
Consensus pattern (58 bp):
AATTTTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGAAATAGA
Found at i:86550541 original size:34 final size:33
Alignment explanation
Indices: 86550489--86550616 Score: 125
Period size: 34 Copynumber: 3.8 Consensus size: 33
86550479 ACACAAAGTT
* *
86550489 ATTTTTTAAAAA-AATAAACCCTAATTTAATTA
1 ATTTTTTAAAAACACTAAACCTTAATTTAATTA
* * *
86550521 ATTTTCTTAAAAACTCTAAACATTAATTTAATTT
1 ATTTT-TTAAAAACACTAAACCTTAATTTAATTA
* * *
86550555 ATTTATTTAAAACCCCTAAA-ATATAATTTAATTA
1 ATTT-TTTAAAAACACTAAACCT-TAATTTAATTA
**
86550589 ATTTTAAAAAAACACTAAACCTTAATTT
1 ATTTTTTAAAAACACTAAACCTTAATTT
86550617 TTTAAAAAAA
Statistics
Matches: 78, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
32 5 0.06
33 26 0.33
34 46 0.59
35 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (33 bp):
ATTTTTTAAAAACACTAAACCTTAATTTAATTA
Found at i:86550626 original size:26 final size:27
Alignment explanation
Indices: 86550590--86550640 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
86550580 ATTTAATTAA
86550590 TTTTAAAAAAA-CAC-TAAACCTTAATT
1 TTTTAAAAAAATC-CTTAAACCTTAATT
86550616 TTTTAAAAAAATCCTTAAACCTTAA
1 TTTTAAAAAAATCCTTAAACCTTAA
86550641 ACTTAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (27 bp):
TTTTAAAAAAATCCTTAAACCTTAATT
Found at i:86552305 original size:33 final size:33
Alignment explanation
Indices: 86552268--86552366 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
86552258 GGATATTATT
*
86552268 ATGGGATATTATCTCTTAGCAATTAT-ATTCCTA
1 ATGGGATATTATCTTTTAGCAATT-TGATTCCTA
*
86552301 ATGGGATATTATTTTTTAGCAATTTGATTCCTA
1 ATGGGATATTATCTTTTAGCAATTTGATTCCTA
86552334 ATGGGATATTATCTTTTAGCAATTTGATTCCTA
1 ATGGGATATTATCTTTTAGCAATTTGATTCCTA
86552367 CGTAACTACT
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
32 1 0.02
33 61 0.98
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.45
Consensus pattern (33 bp):
ATGGGATATTATCTTTTAGCAATTTGATTCCTA
Found at i:86552558 original size:25 final size:25
Alignment explanation
Indices: 86552530--86552583 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
86552520 TAAACTCTCC
86552530 CTTATTAATACAATTACTAAAGCAA
1 CTTATTAATACAATTACTAAAGCAA
86552555 CTTATTAATACAATTACTAAAGCAA
1 CTTATTAATACAATTACTAAAGCAA
86552580 CTTA
1 CTTA
86552584 ATAAGTGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.46, C:0.17, G:0.04, T:0.33
Consensus pattern (25 bp):
CTTATTAATACAATTACTAAAGCAA
Found at i:86562974 original size:94 final size:94
Alignment explanation
Indices: 86562813--86562992 Score: 351
Period size: 94 Copynumber: 1.9 Consensus size: 94
86562803 GGTCGGAGGC
*
86562813 TCAAATCTTGCTTTTAGAAAATTTTATTATTCTTTTGGTTCAACCTTTAACCTTGAACGTTTAAC
1 TCAAATATTGCTTTTAGAAAATTTTATTATTCTTTTGGTTCAACCTTTAACCTTGAACGTTTAAC
86562878 TTAGGTTTAATTCAATGTTAATTTTATTG
66 TTAGGTTTAATTCAATGTTAATTTTATTG
86562907 TCAAATATTGCTTTTAGAAAATTTTATTATTCTTTTGGTTCAACCTTTAACCTTGAACGTTTAAC
1 TCAAATATTGCTTTTAGAAAATTTTATTATTCTTTTGGTTCAACCTTTAACCTTGAACGTTTAAC
86562972 TTAGGTTTAATTCAATGTTAA
66 TTAGGTTTAATTCAATGTTAA
86562993 CCTTGAACGT
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 85 1.00
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.48
Consensus pattern (94 bp):
TCAAATATTGCTTTTAGAAAATTTTATTATTCTTTTGGTTCAACCTTTAACCTTGAACGTTTAAC
TTAGGTTTAATTCAATGTTAATTTTATTG
Found at i:86562993 original size:36 final size:36
Alignment explanation
Indices: 86562953--86563028 Score: 152
Period size: 36 Copynumber: 2.1 Consensus size: 36
86562943 GGTTCAACCT
86562953 TTAACCTTGAACGTTTAACTTAGGTTTAATTCAATG
1 TTAACCTTGAACGTTTAACTTAGGTTTAATTCAATG
86562989 TTAACCTTGAACGTTTAACTTAGGTTTAATTCAATG
1 TTAACCTTGAACGTTTAACTTAGGTTTAATTCAATG
86563025 TTAA
1 TTAA
86563029 TTTATGTAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (36 bp):
TTAACCTTGAACGTTTAACTTAGGTTTAATTCAATG
Found at i:86566947 original size:43 final size:42
Alignment explanation
Indices: 86566900--86567056 Score: 120
Period size: 43 Copynumber: 3.7 Consensus size: 42
86566890 AACATATACA
86566900 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAA-ATTG
** * * *
86566943 ATGCCATTGTCCCAAACAG-GGTCTTACATGAAATC-AGATATG
1 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAAAT-TG
* * * * * * * * *
86566985 ATGTCGATGTCCTAGACATGGTCTTACACGTAAAACAGAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCA-AAATTG
*
86567029 ATGCCAACGTCCCAGATGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
86567057 CGAAATCACA
Statistics
Matches: 85, Mismatches: 23, Indels: 11
0.71 0.19 0.09
Matches are distributed among these distances:
41 2 0.02
42 25 0.29
43 32 0.38
44 24 0.28
45 2 0.02
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAAATTG
Found at i:86572740 original size:20 final size:21
Alignment explanation
Indices: 86572702--86572741 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
86572692 TAATTCATAC
86572702 TATTAATTAATTATGCAAAAA
1 TATTAATTAATTATGCAAAAA
86572723 TATT-ATTAATTTAT-CAAAA
1 TATTAATTAA-TTATGCAAAA
86572742 CTCATAGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (21 bp):
TATTAATTAATTATGCAAAAA
Found at i:86574009 original size:19 final size:20
Alignment explanation
Indices: 86573987--86574024 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
86573977 ATTTTAAAAA
86573987 TTTTAAAAA-TAAAAATTAT
1 TTTTAAAAATTAAAAATTAT
86574006 TTTTAAAAATTAAAAATTA
1 TTTTAAAAATTAAAAATTA
86574025 AAATTAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TTTTAAAAATTAAAAATTAT
Found at i:86574009 original size:28 final size:26
Alignment explanation
Indices: 86573972--86574033 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
86573962 GTCAATATTT
86573972 AATTAATTTTAAAAATTTTAAAAATAAA
1 AATTAATTTTAAAAA--TTAAAAATAAA
* *
86574000 AATTATTTTTAAAAATTAAAAATTAA
1 AATTAATTTTAAAAATTAAAAATAAA
86574026 AATTAATT
1 AATTAATT
86574034 AAAATTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 17 0.55
28 14 0.45
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
AATTAATTTTAAAAATTAAAAATAAA
Found at i:86574314 original size:17 final size:17
Alignment explanation
Indices: 86574289--86574331 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
86574279 TTCTTGTGCC
* *
86574289 AAAAATAAAAGGTTTTG
1 AAAATTAAAAGATTTTG
86574306 AAAATTAAAAAGATTTTG
1 AAAATT-AAAAGATTTTG
86574324 AAAATTAA
1 AAAATTAA
86574332 GTGACTAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.58, C:0.00, G:0.12, T:0.30
Consensus pattern (17 bp):
AAAATTAAAAGATTTTG
Found at i:86574322 original size:18 final size:18
Alignment explanation
Indices: 86574295--86574331 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
86574285 TGCCAAAAAT
*
86574295 AAAAGGTTTTGAAAATTA
1 AAAAGATTTTGAAAATTA
86574313 AAAAGATTTTGAAAATTA
1 AAAAGATTTTGAAAATTA
86574331 A
1 A
86574332 GTGACTAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.14, T:0.32
Consensus pattern (18 bp):
AAAAGATTTTGAAAATTA
Found at i:86574660 original size:20 final size:20
Alignment explanation
Indices: 86574631--86574683 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
86574621 AATTACCAAA
* *
86574631 AAAAAATCAAGATAA-TTTT
1 AAAAATTCAAAATAACTTTT
86574650 CAAAAATTCAAAATAACTTTT
1 -AAAAATTCAAAATAACTTTT
86574671 -AAAATTCAAAATA
1 AAAAATTCAAAATA
86574684 TTATAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 13 0.43
20 13 0.43
21 4 0.13
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (20 bp):
AAAAATTCAAAATAACTTTT
Found at i:86574692 original size:17 final size:19
Alignment explanation
Indices: 86574652--86574694 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
86574642 ATAATTTTCA
*
86574652 AAAATTCAAAATAACTTTT
1 AAAATTCAAAATAACTTAT
86574671 AAAATTCAAAAT-A-TTAT
1 AAAATTCAAAATAACTTAT
86574688 AAAATTC
1 AAAATTC
86574695 TAATTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.43
18 1 0.04
19 12 0.52
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAATTCAAAATAACTTAT
Found at i:86574711 original size:18 final size:18
Alignment explanation
Indices: 86574688--86574733 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
86574678 AAAATATTAT
* *
86574688 AAAATTCTAATTTTTAAA
1 AAAATTCTAAATTTCAAA
*
86574706 AAAATTATAAATTTCAAA
1 AAAATTCTAAATTTCAAA
86574724 AAAA-TCTAAA
1 AAAATTCTAAA
86574734 AAATATATGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 5 0.21
18 19 0.79
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAATTCTAAATTTCAAA
Found at i:86578029 original size:13 final size:13
Alignment explanation
Indices: 86578013--86578077 Score: 69
Period size: 13 Copynumber: 5.1 Consensus size: 13
86578003 AATTTAGCAT
*
86578013 TACTTTTGAAAAT
1 TACTTTTGAAAAG
*
86578026 TACTTTTAAAAAG
1 TACTTTTGAAAAG
* * *
86578039 T-GTTGTGAAAAA
1 TACTTTTGAAAAG
*
86578051 TACTTTTGAGAAG
1 TACTTTTGAAAAG
86578064 TACTTTTGAAAAG
1 TACTTTTGAAAAG
86578077 T
1 T
86578078 TTGATTTAAG
Statistics
Matches: 40, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
12 8 0.20
13 32 0.80
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.40
Consensus pattern (13 bp):
TACTTTTGAAAAG
Found at i:86578075 original size:25 final size:26
Alignment explanation
Indices: 86578013--86578075 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 26
86578003 AATTTAGCAT
86578013 TACTTTTGAAAATTACTTTTAAAAAG
1 TACTTTTGAAAATTACTTTTAAAAAG
* * * * *
86578039 T-GTTGTGAAAAATACTTTTGAGAAG
1 TACTTTTGAAAATTACTTTTAAAAAG
86578064 TACTTTTGAAAA
1 TACTTTTGAAAA
86578076 GTTTGATTTA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
25 20 0.69
26 9 0.31
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (26 bp):
TACTTTTGAAAATTACTTTTAAAAAG
Found at i:86584547 original size:14 final size:14
Alignment explanation
Indices: 86584528--86584566 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
86584518 GGCGTGAATA
86584528 AAAGAAAGAAAAAG
1 AAAGAAAGAAAAAG
* *
86584542 AAAGAAAGCAAATG
1 AAAGAAAGAAAAAG
86584556 AAAGGAAAGAA
1 AAA-GAAAGAA
86584567 CAGAAATAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.72, C:0.03, G:0.23, T:0.03
Consensus pattern (14 bp):
AAAGAAAGAAAAAG
Found at i:86585610 original size:25 final size:25
Alignment explanation
Indices: 86585582--86585629 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
86585572 CTAAAATAGG
86585582 ATTTGTGAACTCGACT-AACTCGATA
1 ATTTGTG-ACTCGACTCAACTCGATA
* *
86585607 ATTTTTGACTCGATTCAACTCGA
1 ATTTGTGACTCGACTCAACTCGA
86585630 CTCGATCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (25 bp):
ATTTGTGACTCGACTCAACTCGATA
Found at i:86587571 original size:13 final size:13
Alignment explanation
Indices: 86587552--86587590 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
86587542 TTTTCTCTCA
*
86587552 ATTTTACAAAAAT
1 ATTTTACTAAAAT
*
86587565 GTTTTACTAAAAT
1 ATTTTACTAAAAT
86587578 ATTTTACTAAAAT
1 ATTTTACTAAAAT
86587591 TATGATTTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.44
Consensus pattern (13 bp):
ATTTTACTAAAAT
Found at i:86589378 original size:34 final size:33
Alignment explanation
Indices: 86589340--86589448 Score: 87
Period size: 34 Copynumber: 3.2 Consensus size: 33
86589330 TTTCTACTGA
* *
86589340 ATTGATCTATTATAAGAATATTA-TTCGTTACTAT
1 ATTGATCTATTATAAGCATATTATTTC--TACCAT
*
86589374 ATTGAAT-TGTTATAAGCATATTGATTTCTACCAT
1 ATTG-ATCTATTATAAGCATATT-ATTTCTACCAT
* * * * *
86589408 ATTGTTCTATTAAAAGCATATTAAATGCTACCGT
1 ATTGATCTATTATAAGCATATT-ATTTCTACCAT
86589442 ATTGATC
1 ATTGATC
86589449 CGTTTTGAAC
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
33 1 0.02
34 53 0.88
35 3 0.05
36 3 0.05
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (33 bp):
ATTGATCTATTATAAGCATATTATTTCTACCAT
Found at i:86591394 original size:23 final size:23
Alignment explanation
Indices: 86591368--86591413 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
86591358 ATTCTTTCAT
*
86591368 TTTCTAT-TTTCTTTGATGTTTTC
1 TTTCTATCTTTCTTT-ATATTTTC
*
86591391 TTTCTTTCTTTCTTTATATTTTC
1 TTTCTATCTTTCTTTATATTTTC
86591414 ATTTTTCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.09, C:0.15, G:0.04, T:0.72
Consensus pattern (23 bp):
TTTCTATCTTTCTTTATATTTTC
Found at i:86593949 original size:85 final size:85
Alignment explanation
Indices: 86593806--86594162 Score: 714
Period size: 85 Copynumber: 4.2 Consensus size: 85
86593796 CGCACGGGCT
86593806 TGTGAGCCACACGGGTGAACCACATGGGCATGTGGGATCTTGGGCCAGGCCGTGTGATCCACACG
1 TGTGAGCCACACGGGTGAACCACATGGGCATGTGGGATCTTGGGCCAGGCCGTGTGATCCACACG
86593871 GGCAAGGCCAATCTAAGCTG
66 GGCAAGGCCAATCTAAGCTG
86593891 TGTGAGCCACACGGGTGAACCACATGGGCATGTGGGATCTTGGGCCAGGCCGTGTGATCCACACG
1 TGTGAGCCACACGGGTGAACCACATGGGCATGTGGGATCTTGGGCCAGGCCGTGTGATCCACACG
86593956 GGCAAGGCCAATCTAAGCTG
66 GGCAAGGCCAATCTAAGCTG
86593976 TGTGAGCCACACGGGTGAACCACATGGGCATGTGGGATCTTGGGCCAGGCCGTGTGATCCACACG
1 TGTGAGCCACACGGGTGAACCACATGGGCATGTGGGATCTTGGGCCAGGCCGTGTGATCCACACG
86594041 GGCAAGGCCAATCTAAGCTG
66 GGCAAGGCCAATCTAAGCTG
86594061 TGTGAGCCACACGGGTGAACCACATGGGCATGTGGGATCTTGGGCCAGGCCGTGTGATCCACACG
1 TGTGAGCCACACGGGTGAACCACATGGGCATGTGGGATCTTGGGCCAGGCCGTGTGATCCACACG
86594126 GGCAAGGCCAATCTAAGCTG
66 GGCAAGGCCAATCTAAGCTG
86594146 TGTGAGCCACACGGGTG
1 TGTGAGCCACACGGGTG
86594163 TGTGGGCCCA
Statistics
Matches: 272, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 272 1.00
ACGTcount: A:0.22, C:0.26, G:0.34, T:0.18
Consensus pattern (85 bp):
TGTGAGCCACACGGGTGAACCACATGGGCATGTGGGATCTTGGGCCAGGCCGTGTGATCCACACG
GGCAAGGCCAATCTAAGCTG
Found at i:86594591 original size:40 final size:40
Alignment explanation
Indices: 86594529--86594605 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
86594519 ACGGTACCAT
* *
86594529 TTGGTGTGTAAGGTTGGATGGGTTGATTTTATCCCCATAC
1 TTGGTGTGTAAGGCTGGATGGGTCGATTTTATCCCCATAC
* *
86594569 TTGGTGTGTAGGGCTGGGTGGGTCGATTTTATCCCCA
1 TTGGTGTGTAAGGCTGGATGGGTCGATTTTATCCCCA
86594606 CATGGTGTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.14, C:0.14, G:0.34, T:0.38
Consensus pattern (40 bp):
TTGGTGTGTAAGGCTGGATGGGTCGATTTTATCCCCATAC
Found at i:86597706 original size:18 final size:18
Alignment explanation
Indices: 86597683--86597723 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
86597673 GCTCCATATG
*
86597683 AACTTGCCTGTTCAAAAT
1 AACTTGCCTATTCAAAAT
86597701 AACTTGCCTATTCAAAAT
1 AACTTGCCTATTCAAAAT
86597719 AACTT
1 AACTT
86597724 TAGGGGCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.34
Consensus pattern (18 bp):
AACTTGCCTATTCAAAAT
Found at i:86601370 original size:51 final size:50
Alignment explanation
Indices: 86601293--86601471 Score: 181
Period size: 51 Copynumber: 3.6 Consensus size: 50
86601283 TGGATACCAG
* *
86601293 GTGG-CTTGCACAAAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
1 GTGGCCTT-CACATAGTACCACACTTGT-GTCAAAGCTACCTTCTTCACAAA
* *
86601344 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTG-TCAAAGCTA-CCTTCTTCACAAA
* * * * *
86601396 GTGGCC-T---ATAGTACCACACTTGTGACCAACCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCAAAGCTACCTTCTTCACAAA
* *
86601441 GTGGCCTTTACATAGTACCACACTTGAGTCA
1 GTGGCCTTCACATAGTACCACACTTGTGTCA
86601472 TTAGTGACAT
Statistics
Matches: 108, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
45 15 0.14
46 1 0.01
47 6 0.06
48 17 0.16
49 17 0.16
50 1 0.01
51 30 0.28
52 21 0.19
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCAAAGCTACCTTCTTCACAAA
Found at i:86601420 original size:48 final size:49
Alignment explanation
Indices: 86601306--86601466 Score: 188
Period size: 51 Copynumber: 3.3 Consensus size: 49
86601296 GCTTGCACAA
* * *
86601306 AGTACCACCCTTGT-AGTCAAAGCTACCTTCTTCACAAAGTGGCCTTCACAT
1 AGTACCACACTTGTGA-CCAAAGCTATCTTCTTCACAAAGTGGCCTT--CAT
86601357 AGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAAGTGGCC-T-AT
1 AGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAAAGTGGCCTTCAT
* *
86601405 AGTACCACACTTGTGACC-AACCTATC-TCTTCTCAAAGTGGCCTTTACAT
1 AGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAAGTGGCC-TT-CAT
86601454 AGTACCACACTTG
1 AGTACCACACTTG
86601467 AGTCATTAGT
Statistics
Matches: 99, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
45 15 0.15
47 8 0.08
48 20 0.20
49 15 0.15
51 23 0.23
52 18 0.18
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.29
Consensus pattern (49 bp):
AGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAAGTGGCCTTCAT
Found at i:86603970 original size:69 final size:69
Alignment explanation
Indices: 86603867--86604062 Score: 347
Period size: 69 Copynumber: 2.8 Consensus size: 69
86603857 GCCAGGTCAA
* *
86603867 GTCCTAGTTTCGAGGCCTACATGAAAAGTTAAACACTATGGGGGTGAGCTTATGAAAATGACAGG
1 GTCCTAGTTTCGAGGCTTACCTGAAAAGTTAAACACTATGGGGGTGAGCTTATGAAAATGACAGG
86603932 TCTG
66 TCTG
86603936 GTCCTAGTTTCGAGGCTTACCTGAAAAGTTAAACACTATGGGGGTGAGCTTATGAAAATGACAGG
1 GTCCTAGTTTCGAGGCTTACCTGAAAAGTTAAACACTATGGGGGTGAGCTTATGAAAATGACAGG
86604001 TCTG
66 TCTG
* *
86604005 GTCCTAGTTTCGAGGCTTACCTGAAAAGTTAAACACTACGGAGGGTGAGCTTGTGAAA
1 GTCCTAGTTTCGAGGCTTACCTGAAAAGTTAAACACTATGG-GGGTGAGCTTATGAAA
86604063 GCTTAGTGTG
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
69 107 0.88
70 15 0.12
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (69 bp):
GTCCTAGTTTCGAGGCTTACCTGAAAAGTTAAACACTATGGGGGTGAGCTTATGAAAATGACAGG
TCTG
Found at i:86610238 original size:16 final size:17
Alignment explanation
Indices: 86610219--86610265 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
86610209 TACCGATTTC
86610219 TCTTTCA-TCTTTTCCT
1 TCTTTCATTCTTTTCCT
*
86610235 TC-TTCATTGTTTTCCT
1 TCTTTCATTCTTTTCCT
* *
86610251 TTTTTCTTTCTTTTC
1 TCTTTCATTCTTTTC
86610266 TATCAGCAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
15 4 0.16
16 11 0.44
17 10 0.40
ACGTcount: A:0.04, C:0.26, G:0.02, T:0.68
Consensus pattern (17 bp):
TCTTTCATTCTTTTCCT
Found at i:86617840 original size:42 final size:42
Alignment explanation
Indices: 86617776--86617865 Score: 137
Period size: 42 Copynumber: 2.1 Consensus size: 42
86617766 TTTGACTTTT
* *
86617776 CAGCAGGTTAAGGCTGAGCATCAGTTACCTTC-GGCTTTGTTG
1 CAGCCGGTTAAGGCTGAGCATCAGTTACCTTCAGG-TTTGCTG
*
86617818 CAGCCGGTTAAGGTTGAGCATCAGTTACCTTCAGGTTTGCTG
1 CAGCCGGTTAAGGCTGAGCATCAGTTACCTTCAGGTTTGCTG
86617860 CAGCCG
1 CAGCCG
86617866 ATTATGATTC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 42 0.95
43 2 0.05
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (42 bp):
CAGCCGGTTAAGGCTGAGCATCAGTTACCTTCAGGTTTGCTG
Found at i:86619445 original size:15 final size:16
Alignment explanation
Indices: 86619412--86619457 Score: 53
Period size: 14 Copynumber: 3.1 Consensus size: 16
86619402 TTTCTTCCTT
*
86619412 TCTTT-ACTAATTT-C
1 TCTTTCACTATTTTCC
*
86619426 TCTTTCA-TCTTTTCC
1 TCTTTCACTATTTTCC
86619441 TCTTTCACTATTTTCC
1 TCTTTCACTATTTTCC
86619457 T
1 T
86619458 TTTTTCTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 9 0.35
15 9 0.35
16 8 0.31
ACGTcount: A:0.13, C:0.28, G:0.00, T:0.59
Consensus pattern (16 bp):
TCTTTCACTATTTTCC
Found at i:86620181 original size:18 final size:17
Alignment explanation
Indices: 86620154--86620187 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
86620144 ATTTGGGTAG
*
86620154 TGTGGGCCACATGGGCT
1 TGTGGGCCACACGGGCT
86620171 TGTGGGCCCACACGGGC
1 TGTGGG-CCACACGGGC
86620188 ATGTCACAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.29, G:0.41, T:0.18
Consensus pattern (17 bp):
TGTGGGCCACACGGGCT
Found at i:86621840 original size:23 final size:23
Alignment explanation
Indices: 86621805--86621848 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
86621795 CCTTTTTCAC
* *
86621805 TTTTGTTTTATTATAAAATAACT
1 TTTTATTTAATTATAAAATAACT
*
86621828 TTTTATTTAATTATAATATAA
1 TTTTATTTAATTATAAAATAA
86621849 AATTAAAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
TTTTATTTAATTATAAAATAACT
Found at i:86627560 original size:4 final size:4
Alignment explanation
Indices: 86627553--86627618 Score: 50
Period size: 4 Copynumber: 16.8 Consensus size: 4
86627543 AGAGGAGGGG
* * *
86627553 GAAA GAAA GGGAAA GAAA GAGA -AAA GAAA GAAA GAAA -AGA GAAG GAAA
1 GAAA GAAA --GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
86627601 GAAA G--A GAAA GGAAA GAA
1 GAAA GAAA GAAA -GAAA GAA
86627619 GAAGAGAGGA
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
2 2 0.04
3 4 0.08
4 35 0.71
5 4 0.08
6 4 0.08
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:86627583 original size:15 final size:14
Alignment explanation
Indices: 86627553--86627623 Score: 70
Period size: 15 Copynumber: 4.9 Consensus size: 14
86627543 AGAGGAGGGG
**
86627553 GAAAGAAAGGGAAA
1 GAAAGAAAAAGAAA
86627567 GAAAGAGAAAAGAAA
1 GAAAGA-AAAAGAAA
*
86627582 GAAAGAAAAGAGAAG
1 GAAAGAAAA-AGAAA
*
86627597 GAAAGAAAGAGAAA
1 GAAAGAAAAAGAAA
*
86627611 GGAAAGAAGAAGA
1 -GAAAGAAAAAGA
86627624 GAGGAAGAGC
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
14 13 0.28
15 34 0.72
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (14 bp):
GAAAGAAAAAGAAA
Found at i:86627587 original size:19 final size:19
Alignment explanation
Indices: 86627563--86627618 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 19
86627553 GAAAGAAAGG
86627563 GAAAGAAAGAGAAAAGAAA
1 GAAAGAAAGAGAAAAGAAA
*
86627582 GAAAGAAA-AG---AGAAG
1 GAAAGAAAGAGAAAAGAAA
*
86627597 GAAAGAAAGAGAAAGGAAA
1 GAAAGAAAGAGAAAAGAAA
86627616 GAA
1 GAA
86627619 GAAGAGAGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 2 0.07
18 2 0.07
19 14 0.47
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
GAAAGAAAGAGAAAAGAAA
Found at i:86627592 original size:34 final size:34
Alignment explanation
Indices: 86627554--86627626 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
86627544 GAGGAGGGGG
86627554 AAAGA-AAGGGAAAGAAAGAGAAAAGAAAGAAAGA
1 AAAGAGAA-GGAAAGAAAGAGAAAAGAAAGAAAGA
*
86627588 AAAGAGAAGGAAAGAAAGAGAAAGGAAAG-AAGA
1 AAAGAGAAGGAAAGAAAGAGAAAAGAAAGAAAGA
*
86627621 AGAGAG
1 AAAGAG
86627627 GAAGAGCAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
33 9 0.25
34 25 0.69
35 2 0.06
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (34 bp):
AAAGAGAAGGAAAGAAAGAGAAAAGAAAGAAAGA
Found at i:86627631 original size:14 final size:14
Alignment explanation
Indices: 86627572--86627643 Score: 65
Period size: 15 Copynumber: 4.9 Consensus size: 14
86627562 GGAAAGAAAG
*
86627572 AGAAAAGA-AAGAA
1 AGAAAAGAGAGGAA
86627585 AGAAAAGAGAAGGAA
1 AGAAAAGAG-AGGAA
*
86627600 AGAAAGAGAAAGGAA
1 AGAAA-AGAGAGGAA
86627615 AGAAGAAGAGAGGAA
1 AGAA-AAGAGAGGAA
* *
86627630 GAGCAAGGAGAGGA
1 -AGAAAAGAGAGGA
86627644 GCTAGGTGGT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
13 8 0.16
15 34 0.69
16 7 0.14
ACGTcount: A:0.62, C:0.01, G:0.36, T:0.00
Consensus pattern (14 bp):
AGAAAAGAGAGGAA
Found at i:86627631 original size:25 final size:24
Alignment explanation
Indices: 86627552--86627638 Score: 70
Period size: 25 Copynumber: 3.5 Consensus size: 24
86627542 AAGAGGAGGG
86627552 GGAAAGAAAGGGAAAGAA-AGAGAAA
1 GGAAAGAAA-GGAAAGAAGA-AGAAA
* *
86627577 AGAAAGAAAGAAAAG-AGAAGGAAA
1 GGAAAGAAAGGAAAGAAGAA-GAAA
* *
86627601 GAAAGAGAAAGGAAAGAAGAAGAGA
1 GGAA-AGAAAGGAAAGAAGAAGAAA
*
86627626 GGAAGAGCAAGGA
1 GGAA-AGAAAGGA
86627639 GAGGAGCTAG
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
23 2 0.04
24 12 0.24
25 32 0.64
26 4 0.08
ACGTcount: A:0.63, C:0.01, G:0.36, T:0.00
Consensus pattern (24 bp):
GGAAAGAAAGGAAAGAAGAAGAAA
Found at i:86635094 original size:90 final size:94
Alignment explanation
Indices: 86634917--86635098 Score: 230
Period size: 90 Copynumber: 2.0 Consensus size: 94
86634907 TTTAAAAAAC
** *
86634917 CCTCAAACTTTTTCAAAACAAAGCAATTAAGCCCCTGCTTTTTATTTTCTTGCACTCAATTAGGT
1 CCTCAAACTTTTTCAAAACAAAGCAATTAAGCCCC-GCCCTTTATGTTCTTGCACTCAATTAGGT
* * *
86634982 ACTTGAGCTTTCAAAATGCTTCAAAAATTT
65 ACTTAAACTCTCAAAATGCTTCAAAAATTT
* *
86635012 CCTCAAAGTTTTTCAAAA-AAAGCAATTAAGCCCC-CCCTTT-TGTT-TTGCACTCAATTGGGTA
1 CCTCAAACTTTTTCAAAACAAAGCAATTAAGCCCCGCCCTTTATGTTCTTGCACTCAATTAGGTA
*
86635073 CTTAAACTGCT-AAAGTGCTTCAAAAA
66 CTTAAACT-CTCAAAATGCTTCAAAAA
86635099 GGCCCTTTGA
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
90 36 0.47
91 4 0.05
92 4 0.05
94 16 0.21
95 17 0.22
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (94 bp):
CCTCAAACTTTTTCAAAACAAAGCAATTAAGCCCCGCCCTTTATGTTCTTGCACTCAATTAGGTA
CTTAAACTCTCAAAATGCTTCAAAAATTT
Found at i:86635302 original size:57 final size:54
Alignment explanation
Indices: 86635236--86635374 Score: 147
Period size: 57 Copynumber: 2.5 Consensus size: 54
86635226 AAGTAAAAAT
*
86635236 TATAGAAAAATATTAAATTTTAATAAAAATTAGAAAATTAAAAAAATCATA-AGAATA
1 TATAAAAAAATATTAAATTTT-ATAAAAATTAGAAAA-TAAAAAAAT-ATATAGAA-A
* * **
86635293 TATATAAAAAT-TGTAAAAATTTATAAAAATTTTAAAATAAAAAAATATATAGAAA
1 TATAAAAAAATAT-T-AAATTTTATAAAAATTAGAAAATAAAAAAATATATAGAAA
*
86635348 TATAGAAAAAATATAAAATTTTATAAA
1 TATA-AAAAAATATTAAATTTTATAAA
86635375 GTCATAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
55 19 0.27
56 20 0.29
57 25 0.36
58 6 0.09
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (54 bp):
TATAAAAAAATATTAAATTTTATAAAAATTAGAAAATAAAAAAATATATAGAAA
Found at i:86635311 original size:9 final size:9
Alignment explanation
Indices: 86635229--86635438 Score: 79
Period size: 10 Copynumber: 22.1 Consensus size: 9
86635219 AAAATAAAAG
86635229 TAAAAATTA
1 TAAAAATTA
*
86635238 TAGAAAAATA
1 TA-AAAATTA
**
86635248 TTAAATTTTAA
1 -TAAAAATT-A
86635259 TAAAAATTA
1 TAAAAATTA
*
86635268 -GAAAATTA
1 TAAAAATTA
* *
86635276 AAAAAATCA
1 TAAAAATTA
86635285 TAAGAATATATA
1 TAA-AA-AT-TA
*
86635297 TAAAAATTG
1 TAAAAATTA
86635306 TAAAAATTTA
1 TAAAAA-TTA
86635316 TAAAAATT-
1 TAAAAATTA
*
86635324 TTAAAA-TA
1 TAAAAATTA
*
86635332 AAAAAATATA
1 TAAAAAT-TA
*
86635342 TAGAAATATA
1 TAAAAAT-TA
* *
86635352 GAAAAAATA
1 TAAAAATTA
*
86635361 T-AAAATTT
1 TAAAAATTA
* *
86635369 TATAAAGTCA
1 TA-AAAATTA
86635379 TAAGAAAATTA
1 T-A-AAAATTA
* *
86635390 TAAAAACTG
1 TAAAAATTA
*
86635399 TAAAGAAATA
1 TAAA-AATTA
86635409 T-AAAATTCA
1 TAAAAATT-A
86635418 TAAAAAAATTA
1 T--AAAAATTA
86635429 TAAAAATTA
1 TAAAAATTA
86635438 T
1 T
86635439 TGTACCAAAA
Statistics
Matches: 147, Mismatches: 35, Indels: 38
0.67 0.16 0.17
Matches are distributed among these distances:
7 1 0.01
8 25 0.17
9 44 0.30
10 51 0.35
11 16 0.11
12 10 0.07
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (9 bp):
TAAAAATTA
Found at i:86635365 original size:55 final size:57
Alignment explanation
Indices: 86635236--86635374 Score: 169
Period size: 55 Copynumber: 2.5 Consensus size: 57
86635226 AAGTAAAAAT
*
86635236 TATAG-AAAAATATTAAATTTTAATAAAAATTAGAAAATTAAAAAAATCATAAGAATA
1 TATAGAAAAAATATAAAATTTT-ATAAAAATTAGAAAATTAAAAAAATCATAAGAATA
* * * * **
86635293 TATATAAAAATTGTAAAAATTTATAAAAATTTTAAAA-TAAAAAAAT-ATATAGAA-A
1 TATAGAAAAAATATAAAATTTTATAAAAATTAGAAAATTAAAAAAATCATA-AGAATA
86635348 TATAGAAAAAATATAAAATTTTATAAA
1 TATAGAAAAAATATAAAATTTTATAAA
86635375 GTCATAAGAA
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
55 27 0.39
56 13 0.19
57 17 0.25
58 12 0.17
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (57 bp):
TATAGAAAAAATATAAAATTTTATAAAAATTAGAAAATTAAAAAAATCATAAGAATA
Found at i:86635432 original size:20 final size:19
Alignment explanation
Indices: 86635368--86635433 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
86635358 ATATAAAATT
* *
86635368 TTATAAAGTCATAAGAAAA
1 TTATAAAATCATAAAAAAA
* * *
86635387 TTATAAAAACTGTAAAGAAA
1 TTATAAAATC-ATAAAAAAA
86635407 -TATAAAATTCATAAAAAAA
1 TTATAAAA-TCATAAAAAAA
86635426 TTATAAAA
1 TTATAAAA
86635434 ATTATTGTAC
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
19 22 0.61
20 14 0.39
ACGTcount: A:0.62, C:0.05, G:0.06, T:0.27
Consensus pattern (19 bp):
TTATAAAATCATAAAAAAA
Found at i:86635436 original size:21 final size:21
Alignment explanation
Indices: 86635362--86635436 Score: 66
Period size: 21 Copynumber: 3.7 Consensus size: 21
86635352 GAAAAAATAT
* * * *
86635362 AAAATTTTATAAAGTCATAAG
1 AAAATTATAAAAATTCATAAA
* *
86635383 AAAATTATAAAAACT-GTAAA
1 AAAATTATAAAAATTCATAAA
*
86635403 GAAA-TAT-AAAATTCATAAA
1 AAAATTATAAAAATTCATAAA
86635422 AAAATTATAAAAATT
1 AAAATTATAAAAATT
86635437 ATTGTACCAA
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
18 5 0.12
19 10 0.24
20 9 0.21
21 18 0.43
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.29
Consensus pattern (21 bp):
AAAATTATAAAAATTCATAAA
Found at i:86635623 original size:9 final size:9
Alignment explanation
Indices: 86635605--86635667 Score: 54
Period size: 9 Copynumber: 6.6 Consensus size: 9
86635595 TAAAATGATT
86635605 ATTTTGATAA
1 ATTTT-ATAA
86635615 ATTTTATAA
1 ATTTTATAA
*
86635624 TTCATTTTATGA
1 ---ATTTTATAA
*
86635636 TTTTTATAA
1 ATTTTATAA
*
86635645 ATTTTACAA
1 ATTTTATAA
*
86635654 ATTTTACAA
1 ATTTTATAA
86635663 ATTTT
1 ATTTT
86635668 TTTATGATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
9 32 0.71
10 5 0.11
12 8 0.18
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.56
Consensus pattern (9 bp):
ATTTTATAA
Found at i:86636280 original size:17 final size:17
Alignment explanation
Indices: 86636258--86636292 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
86636248 CTAAGGAGGT
86636258 AAGTGTATTTTACAGTA
1 AAGTGTATTTTACAGTA
* *
86636275 AAGTGTTTTTTACCGTA
1 AAGTGTATTTTACAGTA
86636292 A
1 A
86636293 TAAAATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (17 bp):
AAGTGTATTTTACAGTA
Found at i:86639816 original size:32 final size:34
Alignment explanation
Indices: 86639780--86639844 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
86639770 TAACAGTGGT
*
86639780 ACTGGGCCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
**
86639812 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATA
86639845 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 10 0.36
33 5 0.18
34 13 0.46
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
Found at i:86642207 original size:22 final size:22
Alignment explanation
Indices: 86642172--86642228 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
86642162 CTCCTGAAAC
86642172 AGGGGC-ACACGCCCATATGGA
1 AGGGGCGACACGCCCATATGGA
* *
86642193 AGGGGCGAGACGCCCGTATGGA
1 AGGGGCGACACGCCCATATGGA
*
86642215 AGGGGCGACTCGCC
1 AGGGGCGACACGCC
86642229 TATGTGGCCT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 6 0.19
22 25 0.81
ACGTcount: A:0.23, C:0.28, G:0.40, T:0.09
Consensus pattern (22 bp):
AGGGGCGACACGCCCATATGGA
Found at i:86643677 original size:98 final size:98
Alignment explanation
Indices: 86643519--86643703 Score: 239
Period size: 98 Copynumber: 1.9 Consensus size: 98
86643509 TCCATACATC
* * * *
86643519 AAGGTCGATGCCATGTCCCAAACAGGTCTTACACCGGCTCTCACTTATATGTGTCGATGCCATGT
1 AAGGCCGATGCCATGTCCCAAACAGGTCTTACACCAGCTCTCACTTATAGGTGTCAATGCCATGT
*
86643584 CTCAAACAGGTCTTACACTAGCTTGCATATCTT
66 CCCAAACAGGTCTTACACTAGCTTGCATATCTT
* * * *
86643617 AAGGCCGATGCCGTGTCCCAGATAGGTCTTACACTAGCTCTCA-TCTATAGGT-TCCAATGCCAT
1 AAGGCCGATGCCATGTCCCAAACAGGTCTTACACCAGCTCTCACT-TATAGGTGT-CAATGCCAT
* *
86643680 GTCCCAGAGAGGTCTTACACTAGC
64 GTCCCAAACAGGTCTTACACTAGC
86643704 ACACACAACA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
97 2 0.03
98 72 0.97
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (98 bp):
AAGGCCGATGCCATGTCCCAAACAGGTCTTACACCAGCTCTCACTTATAGGTGTCAATGCCATGT
CCCAAACAGGTCTTACACTAGCTTGCATATCTT
Found at i:86650013 original size:28 final size:28
Alignment explanation
Indices: 86649981--86650066 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 28
86649971 AGCGTTCCAT
86649981 TTTTCTTATTTTATCAGTTTCTTCATTC
1 TTTTCTTATTTTATCAGTTTCTTCATTC
* * *
86650009 TTTTCTTGTTCCT-CCA-TTTC-T--TT-
1 TTTTCTTATT-TTATCAGTTTCTTCATTC
86650032 TTTTCTTATTTTATCAGTTTCTTCATTC
1 TTTTCTTATTTTATCAGTTTCTTCATTC
86650060 TTTTCTT
1 TTTTCTT
86650067 GTTCCTCCAT
Statistics
Matches: 45, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
22 1 0.02
23 11 0.24
24 6 0.13
25 1 0.02
26 1 0.02
27 6 0.13
28 18 0.40
29 1 0.02
ACGTcount: A:0.10, C:0.20, G:0.03, T:0.66
Consensus pattern (28 bp):
TTTTCTTATTTTATCAGTTTCTTCATTC
Found at i:86650041 original size:51 final size:51
Alignment explanation
Indices: 86649980--86650082 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
86649970 TAGCGTTCCA
86649980 TTTTTCTTATTTTATCAGTTTCTTCATTCTTTTCTTGTTCCTCCATTTCTT
1 TTTTTCTTATTTTATCAGTTTCTTCATTCTTTTCTTGTTCCTCCATTTCTT
86650031 TTTTTCTTATTTTATCAGTTTCTTCATTCTTTTCTTGTTCCTCCATTTCTT
1 TTTTTCTTATTTTATCAGTTTCTTCATTCTTTTCTTGTTCCTCCATTTCTT
86650082 T
1 T
86650083 CCCCCTTTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.10, C:0.21, G:0.04, T:0.65
Consensus pattern (51 bp):
TTTTTCTTATTTTATCAGTTTCTTCATTCTTTTCTTGTTCCTCCATTTCTT
Found at i:86652997 original size:15 final size:15
Alignment explanation
Indices: 86652977--86653033 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
86652967 CGATGAATTT
86652977 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
86652992 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
86653007 ATTGAATTTATATTG
1 ATTGAATTTATATTG
86653022 ATTGAA-TTATAT
1 ATTGAATTTATAT
86653034 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:86653435 original size:23 final size:23
Alignment explanation
Indices: 86653405--86653491 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
86653395 GCTTTATCGA
* *
86653405 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
86653428 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
86653449 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
86653471 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
86653492 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.64
22 2 0.04
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:86656261 original size:19 final size:17
Alignment explanation
Indices: 86656219--86656261 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
86656209 ATGATGAATG
86656219 AGTGAGGGATGATTGAA
1 AGTGAGGGATGATTGAA
86656236 AGATGAGGGATGATTAGAAA
1 AG-TGAGGGATGATT-G-AA
86656256 AGTGAG
1 AGTGAG
86656262 AAATGGGGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 2 0.09
18 12 0.52
19 5 0.22
20 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.21
Consensus pattern (17 bp):
AGTGAGGGATGATTGAA
Found at i:86656699 original size:19 final size:17
Alignment explanation
Indices: 86656657--86656699 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
86656647 ATGATGAATG
86656657 AGTGAGGGATGATTGAA
1 AGTGAGGGATGATTGAA
86656674 AGATGAGGGATGATTAGAAA
1 AG-TGAGGGATGATT-G-AA
86656694 AGTGAG
1 AGTGAG
86656700 AAATGGGGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 2 0.09
18 12 0.52
19 5 0.22
20 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.21
Consensus pattern (17 bp):
AGTGAGGGATGATTGAA
Found at i:86656816 original size:438 final size:438
Alignment explanation
Indices: 86656001--86656875 Score: 1750
Period size: 438 Copynumber: 2.0 Consensus size: 438
86655991 TTGAATTAAA
86656001 TTAAAGAAAAGAAAGATTAAACCCAAATCAAAGTGGCTGTCACCCAAGACTCTGACTGACGAGGG
1 TTAAAGAAAAGAAAGATTAAACCCAAATCAAAGTGGCTGTCACCCAAGACTCTGACTGACGAGGG
86656066 CTCATTCGTTCTTTCGCTTCACTCCTTTGCTGATGGCTCTCTGAGGTGGCCGACCAAGGGCTCTT
66 CTCATTCGTTCTTTCGCTTCACTCCTTTGCTGATGGCTCTCTGAGGTGGCCGACCAAGGGCTCTT
86656131 TAAGAGGATAATTTGCTAAAAATCTTTATGCAAAGATGATGATAGGCATAAGGGCTAAGAGAGTT
131 TAAGAGGATAATTTGCTAAAAATCTTTATGCAAAGATGATGATAGGCATAAGGGCTAAGAGAGTT
86656196 GAGAGAGGAGAGAATGATGAATGAGTGAGGGATGATTGAAAGATGAGGGATGATTAGAAAAGTGA
196 GAGAGAGGAGAGAATGATGAATGAGTGAGGGATGATTGAAAGATGAGGGATGATTAGAAAAGTGA
86656261 GAAATGGGGTCTTATTTATAGGTGAAGCAAATGAGCAAGTTTGCTAAAAATAGGAGTGTCCATCT
261 GAAATGGGGTCTTATTTATAGGTGAAGCAAATGAGCAAGTTTGCTAAAAATAGGAGTGTCCATCT
86656326 TTTGCAAATTCATCCAAGGGTGGCCAGCCATAATTTGTGGAAGTATGGCTGATTTTTTCTTGATT
326 TTTGCAAATTCATCCAAGGGTGGCCAGCCATAATTTGTGGAAGTATGGCTGATTTTTTCTTGATT
86656391 TAAGTGCCACAACATCATCAGGATCAGGACTCGGTAAATTGCAAATCC
391 TAAGTGCCACAACATCATCAGGATCAGGACTCGGTAAATTGCAAATCC
86656439 TTAAAGAAAAGAAAGATTAAACCCAAATCAAAGTGGCTGTCACCCAAGACTCTGACTGACGAGGG
1 TTAAAGAAAAGAAAGATTAAACCCAAATCAAAGTGGCTGTCACCCAAGACTCTGACTGACGAGGG
86656504 CTCATTCGTTCTTTCGCTTCACTCCTTTGCTGATGGCTCTCTGAGGTGGCCGACCAAGGGCTCTT
66 CTCATTCGTTCTTTCGCTTCACTCCTTTGCTGATGGCTCTCTGAGGTGGCCGACCAAGGGCTCTT
86656569 TAAGAGGATAATTTGCTAAAAATCTTTATGCAAAGATGATGATAGGCATAAGGGCTAAGAGAGTT
131 TAAGAGGATAATTTGCTAAAAATCTTTATGCAAAGATGATGATAGGCATAAGGGCTAAGAGAGTT
86656634 GAGAGAGGAGAGAATGATGAATGAGTGAGGGATGATTGAAAGATGAGGGATGATTAGAAAAGTGA
196 GAGAGAGGAGAGAATGATGAATGAGTGAGGGATGATTGAAAGATGAGGGATGATTAGAAAAGTGA
86656699 GAAATGGGGTCTTATTTATAGGTGAAGCAAATGAGCAAGTTTGCTAAAAATAGGAGTGTCCATCT
261 GAAATGGGGTCTTATTTATAGGTGAAGCAAATGAGCAAGTTTGCTAAAAATAGGAGTGTCCATCT
86656764 TTTGCAAATTCATCCAAGGGTGGCCAGCCATAATTTGTGGAAGTATGGCTGATTTTTTCTTGATT
326 TTTGCAAATTCATCCAAGGGTGGCCAGCCATAATTTGTGGAAGTATGGCTGATTTTTTCTTGATT
86656829 TAAGTGCCACAACATCATCAGGATCAGGACTCGGTAAATTGCAAATC
391 TAAGTGCCACAACATCATCAGGATCAGGACTCGGTAAATTGCAAATC
86656876 TCCGGGTAAA
Statistics
Matches: 437, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
438 437 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (438 bp):
TTAAAGAAAAGAAAGATTAAACCCAAATCAAAGTGGCTGTCACCCAAGACTCTGACTGACGAGGG
CTCATTCGTTCTTTCGCTTCACTCCTTTGCTGATGGCTCTCTGAGGTGGCCGACCAAGGGCTCTT
TAAGAGGATAATTTGCTAAAAATCTTTATGCAAAGATGATGATAGGCATAAGGGCTAAGAGAGTT
GAGAGAGGAGAGAATGATGAATGAGTGAGGGATGATTGAAAGATGAGGGATGATTAGAAAAGTGA
GAAATGGGGTCTTATTTATAGGTGAAGCAAATGAGCAAGTTTGCTAAAAATAGGAGTGTCCATCT
TTTGCAAATTCATCCAAGGGTGGCCAGCCATAATTTGTGGAAGTATGGCTGATTTTTTCTTGATT
TAAGTGCCACAACATCATCAGGATCAGGACTCGGTAAATTGCAAATCC
Found at i:86657929 original size:437 final size:437
Alignment explanation
Indices: 86657115--86657990 Score: 1752
Period size: 437 Copynumber: 2.0 Consensus size: 437
86657105 AAAACCCAAT
86657115 TAATGAAACATATTAAAATAAATTATTAAATATGACTTTATATTTTATTATTTAATTTAATCATG
1 TAATGAAACATATTAAAATAAATTATTAAATATGACTTTATATTTTATTATTTAATTTAATCATG
86657180 CATGACCCAGTTTATAGCTTGAAAATATAATATGCTCAAATTTATATAAAAGAAGCCATTTTTTG
66 CATGACCCAGTTTATAGCTTGAAAATATAATATGCTCAAATTTATATAAAAGAAGCCATTTTTTG
86657245 CATGAAAACTATATAATAAAGCATAAAATCATATTTTAATAATTTCTATGTCCCAATTTCATATT
131 CATGAAAACTATATAATAAAGCATAAAATCATATTTTAATAATTTCTATGTCCCAATTTCATATT
86657310 TTCATTTATTTCATTAATTTATTAAGCAATTATTTAGTTTTAACAACAAATTTAAGTAAAAAGGT
196 TTCATTTATTTCATTAATTTATTAAGCAATTATTTAGTTTTAACAACAAATTTAAGTAAAAAGGT
86657375 GACGAATTATATAGGAAAATTTATATATTTTTCAGTTTACACACCCCCAAACTTAAATCGTTGCT
261 GACGAATTATATAGGAAAATTTATATATTTTTCAGTTTACACACCCCCAAACTTAAATCGTTGCT
86657440 CGTCCCGAGTAATGTTCATGCACAATACAAGGTTTCGCTAAAGCAAAATTGCTACAATTGTAAGC
326 CGTCCCGAGTAATGTTCATGCACAATACAAGGTTTCGCTAAAGCAAAATTGCTACAATTGTAAGC
86657505 AACATCAATCCTTGCCCCATAATCATGTATTAATAAATTCATGCTCA
391 AACATCAATCCTTGCCCCATAATCATGTATTAATAAATTCATGCTCA
86657552 TAATGAAACATATTAAAATAAATTATTAAATATGACTTTATATTTTATTATTTAATTTAATCATG
1 TAATGAAACATATTAAAATAAATTATTAAATATGACTTTATATTTTATTATTTAATTTAATCATG
86657617 CATGACCCAGTTTATAGCTTGAAAATATAATATGCTCAAATTTATATAAAAGAAGCCATTTTTTG
66 CATGACCCAGTTTATAGCTTGAAAATATAATATGCTCAAATTTATATAAAAGAAGCCATTTTTTG
86657682 CATGAAAACTATATAATAAAGCATAAAATCATATTTTAATAATTTCTATGTCCCAATTTCATATT
131 CATGAAAACTATATAATAAAGCATAAAATCATATTTTAATAATTTCTATGTCCCAATTTCATATT
86657747 TTCATTTATTTCATTAATTTATTAAGCAATTATTTAGTTTTAACAACAAATTTAAGTAAAAAGGT
196 TTCATTTATTTCATTAATTTATTAAGCAATTATTTAGTTTTAACAACAAATTTAAGTAAAAAGGT
86657812 GACGAATTATATAGGAAAATTTATATATTTTTCAGTTTACACACCCCCAAACTTAAATCGTTGCT
261 GACGAATTATATAGGAAAATTTATATATTTTTCAGTTTACACACCCCCAAACTTAAATCGTTGCT
86657877 CGTCCCGAGTAATGTTCATGCACAATACAAGGTTTCGCTAAAGCAAAATTGCTACAATTGTAAGC
326 CGTCCCGAGTAATGTTCATGCACAATACAAGGTTTCGCTAAAGCAAAATTGCTACAATTGTAAGC
86657942 AACATCAATCCTTGCCCCATAATCATGTATTAATAAATTCATGCTCA
391 AACATCAATCCTTGCCCCATAATCATGTATTAATAAATTCATGCTCA
86657989 TA
1 TA
86657991 GATCTTCTTT
Statistics
Matches: 439, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
437 439 1.00
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.37
Consensus pattern (437 bp):
TAATGAAACATATTAAAATAAATTATTAAATATGACTTTATATTTTATTATTTAATTTAATCATG
CATGACCCAGTTTATAGCTTGAAAATATAATATGCTCAAATTTATATAAAAGAAGCCATTTTTTG
CATGAAAACTATATAATAAAGCATAAAATCATATTTTAATAATTTCTATGTCCCAATTTCATATT
TTCATTTATTTCATTAATTTATTAAGCAATTATTTAGTTTTAACAACAAATTTAAGTAAAAAGGT
GACGAATTATATAGGAAAATTTATATATTTTTCAGTTTACACACCCCCAAACTTAAATCGTTGCT
CGTCCCGAGTAATGTTCATGCACAATACAAGGTTTCGCTAAAGCAAAATTGCTACAATTGTAAGC
AACATCAATCCTTGCCCCATAATCATGTATTAATAAATTCATGCTCA
Found at i:86660051 original size:22 final size:22
Alignment explanation
Indices: 86660020--86660063 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
86660010 AAATATGAAC
86660020 ATAATGAATTTT-AGTTAATTTT
1 ATAATGAATTTTGAG-TAATTTT
*
86660042 ATAATTAATTTTGAGTAATTTT
1 ATAATGAATTTTGAGTAATTTT
86660064 GGTTATTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (22 bp):
ATAATGAATTTTGAGTAATTTT
Found at i:86675823 original size:35 final size:35
Alignment explanation
Indices: 86675777--86675848 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
86675767 CTGTTGAAGG
*
86675777 CATACATGGCCAAGAATAATGCCTTAATCCAAAGC
1 CATACATGGCCAAGAATAACGCCTTAATCCAAAGC
*
86675812 CATACATGGCCAAGAATGACGCCTTAATCCAAAGC
1 CATACATGGCCAAGAATAACGCCTTAATCCAAAGC
86675847 CA
1 CA
86675849 AGCAGTACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.39, C:0.28, G:0.15, T:0.18
Consensus pattern (35 bp):
CATACATGGCCAAGAATAACGCCTTAATCCAAAGC
Found at i:86683834 original size:40 final size:40
Alignment explanation
Indices: 86683797--86684022 Score: 314
Period size: 40 Copynumber: 5.7 Consensus size: 40
86683787 GCTACTCGTT
* *
86683797 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
86683837 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
86683877 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
86683917 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
86683957 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
86683998 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
86684023 CATCATTCAA
Statistics
Matches: 171, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 2 0.01
40 156 0.91
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:86693464 original size:24 final size:24
Alignment explanation
Indices: 86693437--86693483 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
86693427 TTATCACACA
86693437 ATTCAAATAATAATAACAAGATCT
1 ATTCAAATAATAATAACAAGATCT
*
86693461 ATTCAGATAATAATAACAAGATC
1 ATTCAAATAATAATAACAAGATC
86693484 CGTCTTAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.53, C:0.13, G:0.06, T:0.28
Consensus pattern (24 bp):
ATTCAAATAATAATAACAAGATCT
Found at i:86697424 original size:21 final size:20
Alignment explanation
Indices: 86697383--86697424 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
86697373 TGGAATGGTT
*
86697383 AATTTAATCATATTAGCTTG
1 AATTTAATCATATTAGATTG
*
86697403 AATTTAATTCATATTGGATTG
1 AATTTAA-TCATATTAGATTG
86697424 A
1 A
86697425 TTGCATTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.36, C:0.07, G:0.12, T:0.45
Consensus pattern (20 bp):
AATTTAATCATATTAGATTG
Found at i:86707019 original size:40 final size:40
Alignment explanation
Indices: 86706919--86707183 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
86706909 GCTCCTCGTT
* * * *
86706919 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
86706959 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
86706998 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
86707038 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
86707078 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
86707118 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
86707159 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
86707184 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:86707143 original size:80 final size:80
Alignment explanation
Indices: 86706886--86707183 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
86706876 AAATCACGTA
* ** * * *
86706886 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
86706948 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
86706964 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
86707027 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
86707044 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
86707108 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
86707124 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
86707184 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:86707192 original size:41 final size:41
Alignment explanation
Indices: 86707115--86707192 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
86707105 TTTGTATCTC
* * *
86707115 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
86707156 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
86707193 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:86712049 original size:43 final size:42
Alignment explanation
Indices: 86711843--86712053 Score: 185
Period size: 41 Copynumber: 5.0 Consensus size: 42
86711833 ATATTGTACA
** * *
86711843 ATGCCAACGTCCCAGATGTGGTCTTACATGTAATCACATATCG
1 ATGCCAATATCCCAGACGTGGTCTTACACG-AATCACATATCG
* * *
86711886 ATGACACTATCCCAGACAG-GGTCTTACACGAATCAAATA-CG
1 ATGCCAATATCCCAGAC-GTGGTCTTACACGAATCACATATCG
* * * * ** *
86711927 ATGTCGATATCTCAGACATGGTGATACACGAATCAAATA-CG
1 ATGCCAATATCCCAGACGTGGTCTTACACGAATCACATATCG
* * *
86711968 ATGCCGATATCTCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAATATCCCAGACGTGGTCTTACACG-AATCACATATCG
* * *
86712011 ATGCCAAAATCCCAGATGTGGTCTTACACGAGAACACATATCG
1 ATGCCAATATCCCAGACGTGGTCTTACACGA-ATCACATATCG
86712054 GAAATACTAT
Statistics
Matches: 139, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
41 62 0.45
42 17 0.12
43 59 0.42
44 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAATATCCCAGACGTGGTCTTACACGAATCACATATCG
Found at i:86712578 original size:30 final size:29
Alignment explanation
Indices: 86712544--86712607 Score: 69
Period size: 31 Copynumber: 2.2 Consensus size: 29
86712534 TGTTCATAAA
86712544 AGTCCAT-AAATT-TCATTTATTTCACATTTT
1 AGTCCATCAAATTATCATTT-TTTCA-A-TTT
* *
86712574 AGTCCCTCAATTTATCATTTTTTCAATTT
1 AGTCCATCAAATTATCATTTTTTCAATTT
86712603 AGTCC
1 AGTCC
86712608 TAGTTACTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
29 8 0.27
30 7 0.23
31 9 0.30
32 6 0.20
ACGTcount: A:0.27, C:0.20, G:0.05, T:0.48
Consensus pattern (29 bp):
AGTCCATCAAATTATCATTTTTTCAATTT
Found at i:86712879 original size:32 final size:32
Alignment explanation
Indices: 86712843--86712905 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
86712833 GCTCAACAAT
86712843 GGCCAAATACCCTAAGCTTTAATTT-CTTTCTG
1 GGCCAAATACCCTAAGCTTT-ATTTCCTTTCTG
86712875 GGCCAAATACCCTAAGCTTTATTTCCTTTCT
1 GGCCAAATACCCTAAGCTTTATTTCCTTTCT
86712906 TTCTCTCTCG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 4 0.13
32 26 0.87
ACGTcount: A:0.24, C:0.27, G:0.11, T:0.38
Consensus pattern (32 bp):
GGCCAAATACCCTAAGCTTTATTTCCTTTCTG
Found at i:86718864 original size:13 final size:14
Alignment explanation
Indices: 86718843--86718871 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
86718833 TGAAAAATGG
86718843 ATTAGAAAATATTT
1 ATTAGAAAATATTT
86718857 ATTA-AAAATATTT
1 ATTAGAAAATATTT
86718870 AT
1 AT
86718872 GAAGTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:86720256 original size:15 final size:15
Alignment explanation
Indices: 86720233--86720280 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
86720223 TATCAAATTT
86720233 ATATTGATTGAAATC
1 ATATTGATTGAAATC
* * *
86720248 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
86720263 ATATTGATTGAAAT-
1 ATATTGATTGAAATC
86720277 ATAT
1 ATAT
86720281 AATATATATT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:86720879 original size:21 final size:21
Alignment explanation
Indices: 86720830--86720882 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
86720820 TATGTGTCAT
*
86720830 ATTTCAGGCACCTTGTGTGTC
1 ATTTCAGGCACCTCGTGTGTC
***
86720851 ACAGCAGGCACCTCGTGTGTC
1 ATTTCAGGCACCTCGTGTGTC
*
86720872 GTTTCAGGCAC
1 ATTTCAGGCAC
86720883 TTATGTGTCG
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.28, G:0.26, T:0.28
Consensus pattern (21 bp):
ATTTCAGGCACCTCGTGTGTC
Found at i:86728246 original size:43 final size:42
Alignment explanation
Indices: 86728190--86728344 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
86728180 ATATTGTACA
*
86728190 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCACATATTG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACATG-AATCACATATCG
* * *
86728233 ATGCCACTATCCCAGAC-TGGGTCTTACATGAATCA-AAAACG
1 ATGCCACTGTCCCAGACGT-GGTCTTACATGAATCACATATCG
** * * **
86728274 ATGCCGGTGTCTCAGACATGGTCTTACACAAAATCACATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACA-TGAATCACATATCG
86728317 ATGCCAAC-GTCCCAGACGTGGTCTTACA
1 ATGCC-ACTGTCCCAGACGTGGTCTTACA
86728345 CGAGAACACA
Statistics
Matches: 90, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
41 25 0.28
42 14 0.16
43 51 0.57
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACGTGGTCTTACATGAATCACATATCG
Found at i:86739282 original size:43 final size:43
Alignment explanation
Indices: 86739231--86739402 Score: 335
Period size: 43 Copynumber: 4.0 Consensus size: 43
86739221 AACATAATGA
86739231 TAATTAGCTTTGAAATCGAAAGATATTTTGTTAACATTTATAT
1 TAATTAGCTTTGAAATCGAAAGATATTTTGTTAACATTTATAT
86739274 TAATTAGCTTTGAAATCGAAAGATATTTTGTTAACATTTATAT
1 TAATTAGCTTTGAAATCGAAAGATATTTTGTTAACATTTATAT
*
86739317 TAATTATCTTTGAAATCGAAAGATATTTTGTTAACATTTATAT
1 TAATTAGCTTTGAAATCGAAAGATATTTTGTTAACATTTATAT
86739360 TAATTAGCTTTGAAATCGAAAGATATTTTGTTAACATTTATAT
1 TAATTAGCTTTGAAATCGAAAGATATTTTGTTAACATTTATAT
86739403 ATGTGTATTC
Statistics
Matches: 127, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 127 1.00
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.45
Consensus pattern (43 bp):
TAATTAGCTTTGAAATCGAAAGATATTTTGTTAACATTTATAT
Found at i:86741183 original size:46 final size:45
Alignment explanation
Indices: 86741121--86741292 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 45
86741111 ATCTCGTAGC
*
86741121 CGATGCATGTCTCAGACATGTCTTACACTGGCT-TATGTCACAAGG
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCT-TGTCACAAGG
* * * * *
86741166 TCGGTGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATG
1 -CGATGCATGTCCCAGACATGTCTTACACTGGCTCTTGTCACAAGG
* * * ***
86741212 CTGATGCCATGTCCCAGAGATGGTCTTACACTGGCTCCCT-TAATGTGG
1 C-GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-CTTGTCACAAGG
86741260 CCGATGCATGTCCCAGACATGTCTTACACTGGC
1 -CGATGCATGTCCCAGACATGTCTTACACTGGC
86741293 ACACAAATAA
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
45 1 0.01
46 53 0.52
47 27 0.26
48 19 0.19
49 2 0.02
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTTGTCACAAGG
Found at i:86742675 original size:28 final size:28
Alignment explanation
Indices: 86742644--86742727 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
86742634 GTTACCATAT
* * *
86742644 ACAGATAATTGTGGCAGGGCCATCAGAA
1 ACAGATATTTGTGGCAGAGCCACCAGAA
86742672 ACAGATATTTGTGGCAGAGCCACCAGAA
1 ACAGATATTTGTGGCAGAGCCACCAGAA
*
86742700 ACAAATATTTGTGGCAGAGCCACCAGAA
1 ACAGATATTTGTGGCAGAGCCACCAGAA
86742728 CGCTTCCTCC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.37, C:0.20, G:0.25, T:0.18
Consensus pattern (28 bp):
ACAGATATTTGTGGCAGAGCCACCAGAA
Found at i:86744015 original size:18 final size:18
Alignment explanation
Indices: 86743959--86744015 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
86743949 GGCTATAAAG
86743959 GAAAAGAAGAAGAAGAGAA
1 GAAAAGAAGAAG-AGAGAA
* * *
86743978 -AATAGATGAAGAGAGGA
1 GAAAAGAAGAAGAGAGAA
*
86743995 GAAAAGAAGAAGAGAAAA
1 GAAAAGAAGAAGAGAGAA
86744013 GAA
1 GAA
86744016 TTGTCAGAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
17 5 0.17
18 25 0.83
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.04
Consensus pattern (18 bp):
GAAAAGAAGAAGAGAGAA
Found at i:86745041 original size:3 final size:3
Alignment explanation
Indices: 86745033--86745067 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
86745023 AAACCTACAA
* *
86745033 AAT AAT AAT AAT AAT AAA AAT AAT AAT AAC AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
86745068 CATCCAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:86751224 original size:28 final size:28
Alignment explanation
Indices: 86751157--86751226 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
86751147 ACGGCCTGAC
*
86751157 ACATGCCCGTGGCCCTCACACAGCCATG
1 ACATGCCCGTGTCCCTCACACAGCCATG
**
86751185 ACATGCCCGTGTCCCTCACATGGCCATG
1 ACATGCCCGTGTCCCTCACACAGCCATG
86751213 ACATGCCCGTGTCC
1 ACATGCCCGTGTCC
86751227 TAGCCCGTGC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.19, C:0.41, G:0.21, T:0.19
Consensus pattern (28 bp):
ACATGCCCGTGTCCCTCACACAGCCATG
Found at i:86752297 original size:50 final size:50
Alignment explanation
Indices: 86752177--86752442 Score: 199
Period size: 47 Copynumber: 5.6 Consensus size: 50
86752167 GGTGTAATGC
* * * * *
86752177 CGATACCACGTCCCAGACATGGTCTTACACTGGCTTATC-CA--T-CAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGC-TCTCACATCTCCATGT
*
86752224 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCTCCATGT
* * * * *
86752274 TGATGCCATGTCCTAGACATGGTCTTACACT-G---ACACATCT-CGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCTCCAT-GT
* * *
86752320 CGATG-CATGTCCCAGACAT-GTGTTACACTAGCTCT--CGTCTCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCTCCATGT
* * * * * *
86752366 CGATGCCATGTCCTAGACATGGTCTTACATTGGCTCTCATAATGT---GGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CATCTCCATGT
86752414 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
86752443 GTCACACAAA
Statistics
Matches: 175, Mismatches: 29, Indels: 31
0.74 0.12 0.13
Matches are distributed among these distances:
44 9 0.05
45 16 0.09
46 33 0.19
47 60 0.34
48 20 0.11
49 2 0.01
50 33 0.19
51 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCTCCATGT
Found at i:86752427 original size:94 final size:93
Alignment explanation
Indices: 86752172--86752442 Score: 278
Period size: 94 Copynumber: 2.9 Consensus size: 93
86752162 CATAAGGTGT
* * * * * ** *
86752172 AATGCCGATACCACGTCCCAGACATGGTCTTACACTGGCTTATCCATC-AAGTCGATGCCATGTC
1 AATGTCGATGCCATGTCCTAGACATGGTCTTACACTGACACAT-C-TCGTAGTCGATG-CATGTC
86752236 CCAGACATGGTCTTACACTAGCTCTCACATATC
63 CCAGACAT-GTCTTACACTAGCTCT-ACATATC
* * *
86752269 CATGTTGATGCCATGTCCTAGACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCA
1 AATGTCGATGCCATGTCCTAGACATGGTCTTACACTGACACATCTCGTAGTCGATGCATGTCCCA
* * *
86752334 GACATGTGTTACACTAGCTCT-CGTCTC
66 GACATGTCTTACACTAGCTCTACATATC
* * * * *
86752361 AATGTCGATGCCATGTCCTAGACATGGTCTTACATTGGCTC-TCATAATGTGGTCGATGCATGTC
1 AATGTCGATGCCATGTCCTAGACATGGTCTTACACTGACACATC-T--CGTAGTCGATGCATGTC
86752425 CCAGACATGTCTTACACT
63 CCAGACATGTCTTACACT
86752443 GTCACACAAA
Statistics
Matches: 147, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
91 2 0.01
92 41 0.28
94 46 0.31
95 16 0.11
96 8 0.05
97 34 0.23
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (93 bp):
AATGTCGATGCCATGTCCTAGACATGGTCTTACACTGACACATCTCGTAGTCGATGCATGTCCCA
GACATGTCTTACACTAGCTCTACATATC
Found at i:86755697 original size:16 final size:16
Alignment explanation
Indices: 86755660--86755698 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
86755650 AAAATTTATT
86755660 AATT-TTTTATGAAAA
1 AATTATTTTATGAAAA
*
86755675 ATTTTATTTTATGAAAA
1 A-ATTATTTTATGAAAA
86755692 AATTATT
1 AATTATT
86755699 AAAATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
15 1 0.05
16 7 0.35
17 12 0.60
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (16 bp):
AATTATTTTATGAAAA
Found at i:86756478 original size:28 final size:26
Alignment explanation
Indices: 86756425--86756479 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 26
86756415 TACTGGGACA
*
86756425 TTTTTTTCTAATATGATACCTCTATT
1 TTTTTTTCTAATATGATACCTATATT
* *
86756451 TTTTTTTACTCAATTTGATACTTATATT
1 TTTTTTT-CT-AATATGATACCTATATT
86756479 T
1 T
86756480 GACAAAAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 7 0.29
27 2 0.08
28 15 0.62
ACGTcount: A:0.24, C:0.13, G:0.04, T:0.60
Consensus pattern (26 bp):
TTTTTTTCTAATATGATACCTATATT
Found at i:86763445 original size:21 final size:21
Alignment explanation
Indices: 86763419--86763459 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
86763409 AGACGAGCAA
* *
86763419 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
86763440 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
86763460 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Done.