Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 252 of 290
Found at i:86763606 original size:21 final size:21
Alignment explanation
Indices: 86763580--86763620 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
86763570 AGACGAGCAA
* *
86763580 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
86763601 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
86763621 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:86763617 original size:161 final size:161
Alignment explanation
Indices: 86763352--86763676 Score: 632
Period size: 161 Copynumber: 2.0 Consensus size: 161
86763342 ATCTGTAGCA
86763352 GAGATGTTACCTTTGATGAATCTACCACATTGAAAAAGGTAGCAGATAAAGATATTCAGACGAGC
1 GAGATGTTACCTTTGATGAATCTACCACATTGAAAAAGGTAGCAGATAAAGATATTCAGACGAGC
86763417 AATACTCCACAGCAGGTGGAGTGTACTCCAAAACAGGTGGAGTTTGAGCAGATGGGGATTTGCCC
66 AATACTCCACAGCAGGTGGAGTGTACTCCAAAACAGGTGGAGTTTGAGCAGATGGGGATTTGCCC
86763482 AGTTAATAAGTCTAATTCCCCAGCCACAATG
131 AGTTAATAAGTCTAATTCCCCAGCCACAATG
*
86763513 GAGATGTTACCTTTGATGAATCTGCCACATTGAAAAAGGTAGCAGATAAAGATATTCAGACGAGC
1 GAGATGTTACCTTTGATGAATCTACCACATTGAAAAAGGTAGCAGATAAAGATATTCAGACGAGC
86763578 AATACTCCACAGCAGGTGGAGTGTACTCCAAAACAGGTGGAGTTTGAGCAGATGGGGATTTGCCC
66 AATACTCCACAGCAGGTGGAGTGTACTCCAAAACAGGTGGAGTTTGAGCAGATGGGGATTTGCCC
*
86763643 AGTTAATAAGTCTAATTCTCCAGCCACAATG
131 AGTTAATAAGTCTAATTCCCCAGCCACAATG
86763674 GAG
1 GAG
86763677 GAATTAGAGG
Statistics
Matches: 162, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
161 162 1.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (161 bp):
GAGATGTTACCTTTGATGAATCTACCACATTGAAAAAGGTAGCAGATAAAGATATTCAGACGAGC
AATACTCCACAGCAGGTGGAGTGTACTCCAAAACAGGTGGAGTTTGAGCAGATGGGGATTTGCCC
AGTTAATAAGTCTAATTCCCCAGCCACAATG
Found at i:86767707 original size:19 final size:19
Alignment explanation
Indices: 86767659--86767710 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
86767649 ATTGAAAAAG
*
86767659 AAAAGAAAAGGAAAAAAGAA
1 AAAAGAAAA-TAAAAAAGAA
*
86767679 ATACAG-AAATAAAAAAGAA
1 A-AAAGAAAATAAAAAAGAA
86767698 AAAAGAAAATAAA
1 AAAAGAAAATAAA
86767711 TATTTTAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
18 3 0.11
19 17 0.63
20 4 0.15
21 3 0.11
ACGTcount: A:0.79, C:0.02, G:0.13, T:0.06
Consensus pattern (19 bp):
AAAAGAAAATAAAAAAGAA
Found at i:86770276 original size:21 final size:21
Alignment explanation
Indices: 86770242--86770302 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
86770232 CTCTTGAAGC
*
86770242 AGGGC-ACACACCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
86770262 AGGGCAACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
* *
86770283 AGGGCAGCACGCCTGTGTGG
1 AGGGCAACACGCCCGTGTGG
86770303 TCATTATAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
20 5 0.14
21 32 0.86
ACGTcount: A:0.21, C:0.28, G:0.39, T:0.11
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:86771648 original size:48 final size:46
Alignment explanation
Indices: 86771592--86771806 Score: 216
Period size: 46 Copynumber: 4.6 Consensus size: 46
86771582 AAGCTGACGC
* * * *
86771592 CATGTCCCAGACAGGTCTTACACTAGCTTTTATATCGCGAGGTCAATG
1 CATGTCCCAGACATGTCTTACACTAGC-TTT-TATCGCAAGGCCGATG
* * * *
86771640 CATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTTTATCGCAAGGCCGATG
* * * *
86771686 CATGTCCCAGACAAGTCTTACACTGGCTTAAATATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT--TTATCGCAAGGCCGATG
* * * ** *
86771734 CGTGTCCCAAACATGTCTTACACTAGCTTTCAT-GCTGTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTTTATCGC-AAGGCCGATG
86771780 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
86771807 ACACATATCA
Statistics
Matches: 138, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
45 1 0.01
46 70 0.51
47 2 0.01
48 65 0.47
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTTTTATCGCAAGGCCGATG
Found at i:86771705 original size:94 final size:94
Alignment explanation
Indices: 86771592--86771806 Score: 256
Period size: 94 Copynumber: 2.3 Consensus size: 94
86771582 AAGCTGACGC
* ** * * *
86771592 CATGTCCCAGACAGGTCTTACACTAGCTTTTATATCGCGAGGTCAATGCATGTCCCAGACATGTC
1 CATGTCCCAGACAAGTCTTACACTAGCTTAAATATCGCAAGGCCAATGCATGTCCCAAACATGTC
86771657 TTACACTAGCTCTTGTC-T-CAAT-GCCGATG
66 TTACACTAG--CTT-TCATGCAATGGCCGATG
* * * *
86771686 CATGTCCCAGACAAGTCTTACACTGGCTTAAATATCTCAAGGCCGATGCGTGTCCCAAACATGTC
1 CATGTCCCAGACAAGTCTTACACTAGCTTAAATATCGCAAGGCCAATGCATGTCCCAAACATGTC
** *
86771751 TTACACTAGCTTTCATGCTGTGGCTGATG
66 TTACACTAGCTTTCATGCAATGGCCGATG
*
86771780 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACAAGTCTTACACTAGC
86771807 ACACATATCA
Statistics
Matches: 103, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
91 2 0.02
92 4 0.04
93 2 0.02
94 95 0.92
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (94 bp):
CATGTCCCAGACAAGTCTTACACTAGCTTAAATATCGCAAGGCCAATGCATGTCCCAAACATGTC
TTACACTAGCTTTCATGCAATGGCCGATG
Found at i:86779117 original size:10 final size:10
Alignment explanation
Indices: 86779102--86779126 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
86779092 CTCATTTGGA
86779102 ATACTACCGG
1 ATACTACCGG
86779112 ATACTACCGG
1 ATACTACCGG
86779122 ATACT
1 ATACT
86779127 CAATAGCCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (10 bp):
ATACTACCGG
Found at i:86779241 original size:49 final size:49
Alignment explanation
Indices: 86779160--86779279 Score: 170
Period size: 49 Copynumber: 2.4 Consensus size: 49
86779150 ATGTCGACGT
*
86779160 CATGTCCCAGACATGGTCTTACACTGGTTTTCATATAGCGAG-GCCGATGC
1 CATGTCCCAGACA-GGTCTTACACTGGCTTTCATATAGCG-GTGCCGATGC
* * * *
86779210 CATGTCCCAGACAGGTCTTACATTGGCTTTCATCTATCGGTGTCGATGC
1 CATGTCCCAGACAGGTCTTACACTGGCTTTCATATAGCGGTGCCGATGC
86779259 CATGTCCCAGACAGGTCTTAC
1 CATGTCCCAGACAGGTCTTAC
86779280 TCTGACACAC
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
48 1 0.02
49 50 0.78
50 13 0.20
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.29
Consensus pattern (49 bp):
CATGTCCCAGACAGGTCTTACACTGGCTTTCATATAGCGGTGCCGATGC
Found at i:86779411 original size:46 final size:46
Alignment explanation
Indices: 86779345--86779469 Score: 164
Period size: 46 Copynumber: 2.7 Consensus size: 46
86779335 TATCGCGAGG
* **
86779345 CTGATGCATGTCCCAGACATGTCTTACACTAGCTCTGGT-CTCAATGA
1 CTGATGCATGTCTCAGACATGTCTTACACTAGCTCTCATGCT--ATGA
* * *
86779392 C-GATGCATGTCTCAGACATGTCTTACACTGGCTCTCATGCTGTGG
1 CTGATGCATGTCTCAGACATGTCTTACACTAGCTCTCATGCTATGA
86779437 CTGATGCATGTCTCAGACATGTCTTACACTAGC
1 CTGATGCATGTCTCAGACATGTCTTACACTAGC
86779470 ACACATATCA
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
45 3 0.04
46 63 0.91
47 3 0.04
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (46 bp):
CTGATGCATGTCTCAGACATGTCTTACACTAGCTCTCATGCTATGA
Found at i:86781724 original size:21 final size:22
Alignment explanation
Indices: 86781698--86781738 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
86781688 CACTTGACAT
*
86781698 AGGGGC-ATACGCCCGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
86781719 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
86781739 ACCAATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.27, G:0.44, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:86782931 original size:47 final size:50
Alignment explanation
Indices: 86782860--86782986 Score: 163
Period size: 49 Copynumber: 2.6 Consensus size: 50
86782850 AATGCTGACA
* * * *
86782860 CCATGTCCCAGACATGGTCTTACACTGGCTCA-TGTC-TC-AAGTTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCATTGTCACCGAAGTCGACG
* * *
86782907 CTATGTCCCAGACATGGTCTTACACTAACT-ATTGTCACCGAGGTCGACG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCATTGTCACCGAAGTCGACG
86782956 CCATGTCCCAGACATGGTCTTACACTAGCTC
1 CCATGTCCCAGACATGGTCTTACACTAGCTC
86782987 TCGCATATCT
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.01
47 31 0.46
48 1 0.01
49 34 0.51
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCATTGTCACCGAAGTCGACG
Found at i:86783142 original size:46 final size:45
Alignment explanation
Indices: 86783091--86783220 Score: 129
Period size: 47 Copynumber: 2.8 Consensus size: 45
86783081 ACCTTACGAG
* *
86783091 GTCGATGCATGTCCCAGACACATCTTACACTAGCTCTCGTCTCAAT-T
1 GTCGATGCATGTCCCAGACACGTCTTACACTAGCTCTC--AT-AATAT
* * *
86783138 -TCGATGCCATGTCCCAGGCATGGTCTTACAGTAGCTCTCATAATAT
1 GTCGATG-CATGTCCCAGACA-CGTCTTACACTAGCTCTCATAATAT
* *
86783184 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GTC-GATGCATGTCCCAGACACGTCTTACACTAGCTC
86783221 ACAATAGCCC
Statistics
Matches: 69, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
45 3 0.04
46 22 0.32
47 25 0.36
48 19 0.28
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
GTCGATGCATGTCCCAGACACGTCTTACACTAGCTCTCATAATAT
Found at i:86788836 original size:23 final size:23
Alignment explanation
Indices: 86788801--86788845 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
86788791 ATAGCTATGC
*
86788801 AACAACAATAAAACAACACCAAT
1 AACAACAACAAAACAACACCAAT
* * *
86788824 AACAACACCAAAATAGCACCAA
1 AACAACAACAAAACAACACCAA
86788846 AAACCTGCAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.62, C:0.29, G:0.02, T:0.07
Consensus pattern (23 bp):
AACAACAACAAAACAACACCAAT
Found at i:86804084 original size:43 final size:43
Alignment explanation
Indices: 86803914--86804086 Score: 167
Period size: 43 Copynumber: 4.0 Consensus size: 43
86803904 ATATCGTACA
* * *
86803914 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCACATGTCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACATATCG
*
86803957 ATGCC-ACTGTCCCAAACAG-GGTCTTACAC-AAATCACA-ATTACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCACATA-T-CG
* * * * * *
86804000 ATGCCGATGTCCTAGACATGGTCTTACTCGAAATCAGATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACATATCG
*
86804043 ATGCCAACGTCCCAGATGTGGTCTTACACGAGAA-CACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGA-AATCACATATCG
86804086 A
1 A
86804087 AAATCCTATG
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 11 0.11
43 80 0.77
44 12 0.12
45 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATCACATATCG
Found at i:86811529 original size:29 final size:30
Alignment explanation
Indices: 86811472--86811529 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
86811462 CTTTTGAAAA
* * * *
86811472 TATTTACAAAAAGTGGCATCTAATTTTTAT
1 TATTTACAAAAAGTAGCAACCAAATTTTAT
86811502 TATTTACAAAAAG-AGCAACCAAATTTTA
1 TATTTACAAAAAGTAGCAACCAAATTTTA
86811530 AAAATACTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (30 bp):
TATTTACAAAAAGTAGCAACCAAATTTTAT
Found at i:86816981 original size:30 final size:30
Alignment explanation
Indices: 86816935--86816995 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
86816925 TTCCTGAGCC
* *
86816935 TAGGGGTAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATACAAAAGTT
* * *
86816965 TAGGGGCAAAATTGTAATTTTACAAAAGTT
1 TAGGGGCAAAAGTGTAAATATACAAAAGTT
86816995 T
1 T
86816996 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATACAAAAGTT
Found at i:86817778 original size:68 final size:66
Alignment explanation
Indices: 86817706--86817877 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
86817696 CATCATGTGT
* * * *
86817706 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
86817769 TGTAG
62 TGTAG
** * *
86817774 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
86817839 AG
65 AG
* * * *
86817841 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
86817878 GGTGGAACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:86817811 original size:64 final size:64
Alignment explanation
Indices: 86817730--86817913 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 64
86817720 AGACATTATG
* *
86817730 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
86817794 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
86817859 AA
63 AA
* * *
86817861 AT-TGGCTAGGTCACATGGGTGGA-ACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGT-GATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
86817914 CAAACTATAT
Statistics
Matches: 97, Mismatches: 17, Indels: 13
0.76 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 25 0.26
66 18 0.19
67 34 0.35
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:86826708 original size:50 final size:49
Alignment explanation
Indices: 86826592--86826767 Score: 192
Period size: 50 Copynumber: 3.5 Consensus size: 49
86826582 TGAGGTCGCA
* * * * * *
86826592 TGTGAAGTACTAAGTGCAGGCTACTAGGCGTACCCGAAA-ACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TC-AAATAAT-TGGTCACG
*
86826643 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATAGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATAATT-GGTCACG
** * *
86826693 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATAATTGGTCACG
* *
86826742 TGAGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
86826768 TGCGTACCAG
Statistics
Matches: 110, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
49 33 0.30
50 48 0.44
51 29 0.26
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATAATTGGTCACG
Found at i:86826782 original size:99 final size:101
Alignment explanation
Indices: 86826592--86826783 Score: 235
Period size: 99 Copynumber: 1.9 Consensus size: 101
86826582 TGAGGTCGCA
* * *
86826592 TGTGAAGTACTAAGTGCAGGCTACTAGGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
1 TGTGAAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACATGAGTAGTACTAAG
* *
86826657 TGCAGGCTACTACGTGTATCAAATAGTTAGGTCACG
66 TGCAGGCTACTACGCGTACCAAATAGTTAGGTCACG
* * * * * * *
86826693 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAA-T-TGGTCGCATGAGTAGTACTAAG
1 TGTGAAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACATGAGTAGTACTAAG
* * *
86826756 TGTAGGCTACTATGCGTACCAGATAGTT
66 TGCAGGCTACTACGCGTACCAAATAGTT
86826784 TGGCTACATA
Statistics
Matches: 76, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
99 41 0.54
100 1 0.01
101 34 0.45
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (101 bp):
TGTGAAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACATGAGTAGTACTAAG
TGCAGGCTACTACGCGTACCAAATAGTTAGGTCACG
Found at i:86834024 original size:29 final size:31
Alignment explanation
Indices: 86833976--86834039 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
86833966 TTTATATTTA
*
86833976 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
*
86834007 TTTAATAAGAT-ATT-TTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
86834036 TTTA
1 TTTA
86834040 TTTAGTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:86834028 original size:8 final size:8
Alignment explanation
Indices: 86834017--86834041 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
86834007 TTTAATAAGA
86834017 TATTTTAT
1 TATTTTAT
86834025 TATTTTAT
1 TATTTTAT
86834033 TATTTTAT
1 TATTTTAT
86834041 T
1 T
86834042 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:86841374 original size:75 final size:75
Alignment explanation
Indices: 86841251--86841402 Score: 304
Period size: 75 Copynumber: 2.0 Consensus size: 75
86841241 ACTTAGGGAT
86841251 CTCTACGGAACAAGTTGAATGAATAAATTGTCCGATTCAGAGTCAAATAACAAGTAAAGTCTAGG
1 CTCTACGGAACAAGTTGAATGAATAAATTGTCCGATTCAGAGTCAAATAACAAGTAAAGTCTAGG
86841316 TGGATTTTTC
66 TGGATTTTTC
86841326 CTCTACGGAACAAGTTGAATGAATAAATTGTCCGATTCAGAGTCAAATAACAAGTAAAGTCTAGG
1 CTCTACGGAACAAGTTGAATGAATAAATTGTCCGATTCAGAGTCAAATAACAAGTAAAGTCTAGG
86841391 TGGATTTTTC
66 TGGATTTTTC
86841401 CT
1 CT
86841403 TAGGTATTGT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Consensus pattern (75 bp):
CTCTACGGAACAAGTTGAATGAATAAATTGTCCGATTCAGAGTCAAATAACAAGTAAAGTCTAGG
TGGATTTTTC
Found at i:86843518 original size:83 final size:83
Alignment explanation
Indices: 86843418--86843590 Score: 301
Period size: 83 Copynumber: 2.1 Consensus size: 83
86843408 TTGAACTTTT
**
86843418 TAAACAACTACATATTAACTTACCTTTTGTTGAAGCTATATCGTAGATGCCTGCATACGCAAAAT
1 TAAACAACTACATATTAACTTACCTTTTGTTGAAGCTATATCACAGATGCCTGCATACGCAAAAT
*
86843483 TTTTAAAGGATCTCCTAA
66 TTTTAAAGGAGCTCCTAA
*
86843501 TAAACAACTACATATTAACTTACCTTTTGTTGAAGCTATATCACGGATGCCTGCATACGCAAAAT
1 TAAACAACTACATATTAACTTACCTTTTGTTGAAGCTATATCACAGATGCCTGCATACGCAAAAT
86843566 TTTTAAAGGAGCTCCTAA
66 TTTTAAAGGAGCTCCTAA
*
86843584 CAAACAA
1 TAAACAA
86843591 AATGAAGTTT
Statistics
Matches: 85, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 85 1.00
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.31
Consensus pattern (83 bp):
TAAACAACTACATATTAACTTACCTTTTGTTGAAGCTATATCACAGATGCCTGCATACGCAAAAT
TTTTAAAGGAGCTCCTAA
Found at i:86851856 original size:26 final size:24
Alignment explanation
Indices: 86851811--86851861 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 24
86851801 AGAAATTTGA
86851811 CATCAATAATATAGTATTATTTCATG
1 CATCAATAATATAG-ATTA-TTCATG
86851837 CATCAATAGATATA-ACTTATTCATG
1 CATCAATA-ATATAGA-TTATTCATG
86851862 TCATAAACCC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
25 7 0.30
26 11 0.48
27 5 0.22
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (24 bp):
CATCAATAATATAGATTATTCATG
Found at i:86855209 original size:13 final size:13
Alignment explanation
Indices: 86855191--86855217 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86855181 GATATCTGAA
86855191 AAAAATAAAAAAT
1 AAAAATAAAAAAT
86855204 AAAAATAAAAAAT
1 AAAAATAAAAAAT
86855217 A
1 A
86855218 TGGACCAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:86856529 original size:20 final size:20
Alignment explanation
Indices: 86856504--86856543 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
86856494 AGTAACTAAG
*
86856504 AAAAGAAATATGATTTTAAC
1 AAAAGAAATATAATTTTAAC
86856524 AAAAGAAATATAATTTTAAC
1 AAAAGAAATATAATTTTAAC
86856544 TCAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.30
Consensus pattern (20 bp):
AAAAGAAATATAATTTTAAC
Found at i:86868400 original size:48 final size:48
Alignment explanation
Indices: 86868327--86868502 Score: 262
Period size: 48 Copynumber: 3.7 Consensus size: 48
86868317 TCATGTCAGT
* *
86868327 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAC
* * * *
86868375 GCCGATGCCATTTCCTAGACATGGTCTTACACTACCTCACATATCAAC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAC
* *
86868423 GTCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCACATATCAAC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAC
* *
86868471 ATCGATGCTATGTCCCAGACATGGTCTTACAC
1 GTCGATGCCATGTCCCAGACATGGTCTTACAC
86868503 GGAATCTCAT
Statistics
Matches: 113, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 113 1.00
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAC
Found at i:86870352 original size:17 final size:17
Alignment explanation
Indices: 86870332--86870376 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
86870322 AGAAAAGTGG
* *
86870332 CATTGTAAGAACGTTTA
1 CATTGCAAGAACATTTA
*
86870349 CATTGCGAGAACATTTA
1 CATTGCAAGAACATTTA
*
86870366 CATTGCGAGAA
1 CATTGCAAGAA
86870377 AGATGACTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.29
Consensus pattern (17 bp):
CATTGCAAGAACATTTA
Found at i:86871897 original size:19 final size:19
Alignment explanation
Indices: 86871873--86871965 Score: 70
Period size: 19 Copynumber: 4.9 Consensus size: 19
86871863 TATTTCAAAA
86871873 TAATATTATTTTAATATTT
1 TAATATTATTTTAATATTT
*
86871892 TAATATTA-ATTAA-A-TT
1 TAATATTATTTTAATATTT
*
86871908 TAATACTTATCTTAATATTAT
1 TAATA-TTATTTTAATATT-T
* *
86871929 T-TTATTAATTTAATA-TT
1 TAATATTATTTTAATATTT
*
86871946 AAAGTGATTATTTTAATATT
1 TAA-T-ATTATTTTAATATT
86871966 AAATTTAATT
Statistics
Matches: 57, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
16 7 0.12
17 5 0.09
18 9 0.16
19 19 0.33
20 14 0.25
21 3 0.05
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (19 bp):
TAATATTATTTTAATATTT
Found at i:86871935 original size:36 final size:36
Alignment explanation
Indices: 86871873--86871965 Score: 91
Period size: 36 Copynumber: 2.5 Consensus size: 36
86871863 TATTTCAAAA
*
86871873 TAATATTATTTTAATATTTTAATATTAATTAAAT-T
1 TAATATTATCTTAATATTTTAATATTAATTAAATAT
* *
86871908 TAATACTTATCTTAATATTATT-TTATTAATTTAATAT
1 TAATA-TTATCTTAATATT-TTAATATTAATTAAATAT
*
86871945 TAAAGTGATTATTTTAATATT
1 T-AA-T-ATTATCTTAATATT
86871966 AAATTTAATT
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
35 5 0.10
36 23 0.48
37 4 0.08
38 2 0.04
39 13 0.27
40 1 0.02
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (36 bp):
TAATATTATCTTAATATTTTAATATTAATTAAATAT
Found at i:86873875 original size:12 final size:12
Alignment explanation
Indices: 86873858--86873893 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
86873848 TCACTTAATT
86873858 GTAAAATTATTC
1 GTAAAATTATTC
86873870 GTAAAATTATTC
1 GTAAAATTATTC
86873882 GTAAAATTATTC
1 GTAAAATTATTC
86873894 TTTACAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (12 bp):
GTAAAATTATTC
Found at i:86876318 original size:16 final size:18
Alignment explanation
Indices: 86876291--86876326 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
86876281 TAGAATTGGG
86876291 TTGAGAAAATT-ATTTAT
1 TTGAGAAAATTAATTTAT
86876308 TTGAG-AAATTAATTTAT
1 TTGAGAAAATTAATTTAT
86876325 TT
1 TT
86876327 AAATTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAT
Found at i:86881364 original size:27 final size:27
Alignment explanation
Indices: 86881326--86881380 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
86881316 TTATTAGGTG
86881326 TGATTGGATCATCTCGAAATTTAATCA
1 TGATTGGATCATCTCGAAATTTAATCA
86881353 TGATTGGATCATCTCGAAATTTAATCA
1 TGATTGGATCATCTCGAAATTTAATCA
86881380 T
1 T
86881381 TTTAATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (27 bp):
TGATTGGATCATCTCGAAATTTAATCA
Found at i:86883320 original size:18 final size:18
Alignment explanation
Indices: 86883286--86883323 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
86883276 TTTTGCTTTC
*
86883286 TGTCTTCTATTTTTTTTT
1 TGTCTTCTATTTCTTTTT
86883304 TGTCTTCT-TTTCCTTTTT
1 TGTCTTCTATTT-CTTTTT
86883322 TG
1 TG
86883324 CAGGTGATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.03, C:0.16, G:0.08, T:0.74
Consensus pattern (18 bp):
TGTCTTCTATTTCTTTTT
Found at i:86887584 original size:24 final size:24
Alignment explanation
Indices: 86887499--86887649 Score: 87
Period size: 24 Copynumber: 6.2 Consensus size: 24
86887489 CATAATGTAG
*
86887499 TTTAAACTATTTTATATATTATTTAT
1 TTTAAA-TATTTT-TATATTGTTTAT
**
86887525 TTTAAA-CCTTTTATATTAG-TTAT
1 TTTAAATATTTTTATATT-GTTTAT
*** *
86887548 TTTAAACCGTTTTACATTGTTTAT
1 TTTAAATATTTTTATATTGTTTAT
* *
86887572 TTTAAATATTTTT-TGTTATTT-T
1 TTTAAATATTTTTATATTGTTTAT
* * * *
86887594 TTTAACTATTTTATATATTATTCAC
1 TTTAAATATTTT-TATATTGTTTAT
*
86887619 TTTAAAT-TTTTTATATAATATTTAT
1 TTTAAATATTTTTATAT--TGTTTAT
86887644 TTTAAA
1 TTTAAA
86887650 CTGTTTTTTA
Statistics
Matches: 99, Mismatches: 18, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
22 12 0.12
23 28 0.28
24 36 0.36
25 17 0.17
26 6 0.06
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (24 bp):
TTTAAATATTTTTATATTGTTTAT
Found at i:86887656 original size:28 final size:28
Alignment explanation
Indices: 86887625--86887690 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 28
86887615 TCACTTTAAA
*
86887625 TTTTTTATATA-ATATTTATTTTAAACTG
1 TTTTTTATATACAT-GTTATTTTAAACTG
* *
86887653 TTTTTTA-ATACATGTTATTTTGAATTG
1 TTTTTTATATACATGTTATTTTAAACTG
*
86887680 TTTTATATATA
1 TTTTTTATATA
86887691 TTAATTACTC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 20 0.62
28 12 0.38
ACGTcount: A:0.30, C:0.03, G:0.06, T:0.61
Consensus pattern (28 bp):
TTTTTTATATACATGTTATTTTAAACTG
Found at i:86887893 original size:48 final size:48
Alignment explanation
Indices: 86887804--86887898 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
86887794 TTTTATATGG
* *
86887804 ATTATTTATTTTCAAATTTCTATTTATTGTTTATCTTAAACTCTTTATAC
1 ATTATTTATTTT-AAATTTCTATATATTATTTATCTTAAACT-TTTATAC
* * *
86887854 ATTATTTATTTT-ATTTTTTATATATTATTTATGTTAAACTTTTAT
1 ATTATTTATTTTAAATTTCTATATATTATTTATCTTAAACTTTTAT
86887899 TTTATTTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
47 5 0.12
48 23 0.57
50 12 0.30
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.62
Consensus pattern (48 bp):
ATTATTTATTTTAAATTTCTATATATTATTTATCTTAAACTTTTATAC
Found at i:86887904 original size:25 final size:23
Alignment explanation
Indices: 86887794--86887905 Score: 77
Period size: 25 Copynumber: 4.7 Consensus size: 23
86887784 TAAACTTCCT
86887794 TTTTATATGGATTATTTATTTTCAAA-
1 TTTTATAT--ATTATTTA-TTT-AAAC
* *
86887820 TTTCTATTTATTGTTTATCTTAAAC
1 TTT-TATATATTATTTAT-TTAAAC
* * **
86887845 TCTTTATACATTATTTATTTTATT
1 T-TTTATATATTATTTATTTAAAC
86887869 TTTTATATATTATTTATGTTAAAC
1 TTTTATATATTATTTAT-TTAAAC
86887893 TTTTAT-T-TTATTT
1 TTTTATATATTATTT
86887906 TATCTATATT
Statistics
Matches: 69, Mismatches: 12, Indels: 14
0.73 0.13 0.15
Matches are distributed among these distances:
22 6 0.09
23 16 0.23
24 17 0.25
25 21 0.30
26 5 0.07
27 4 0.06
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATATATTATTTATTTAAAC
Found at i:86888445 original size:20 final size:20
Alignment explanation
Indices: 86888420--86888459 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
86888410 CGCGTTTTGG
86888420 AACATCGAGGAATTGTGCAC
1 AACATCGAGGAATTGTGCAC
86888440 AACATCGAGGAATTGTGCAC
1 AACATCGAGGAATTGTGCAC
86888460 TAACTTACGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (20 bp):
AACATCGAGGAATTGTGCAC
Found at i:86890100 original size:25 final size:25
Alignment explanation
Indices: 86890060--86890129 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
86890050 CTCTTTCTAT
*
86890060 TTGCA-TTCATCCCATGCATTTGCA
1 TTGCATTTCATCACATGCATTTGCA
*
86890084 TTGTATTTCATCACATGCATTTGCA
1 TTGCATTTCATCACATGCATTTGCA
86890109 TTGCATTTCATCACATGCATT
1 TTGCATTTCATCACATGCATT
86890130 AGATTTTCAC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 4 0.10
25 38 0.90
ACGTcount: A:0.23, C:0.24, G:0.11, T:0.41
Consensus pattern (25 bp):
TTGCATTTCATCACATGCATTTGCA
Found at i:86891926 original size:32 final size:32
Alignment explanation
Indices: 86891877--86891941 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
86891867 TGCCTAAGCT
86891877 ACTAAGACATGAAGATGCTATGGGGTGTTCGA
1 ACTAAGACATGAAGATGCTATGGGGTGTTCGA
* *
86891909 ACTAAGATATGAGGATGCTATGGGGTGTTCGA
1 ACTAAGACATGAAGATGCTATGGGGTGTTCGA
86891941 A
1 A
86891942 AAGCACAGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.11, G:0.32, T:0.26
Consensus pattern (32 bp):
ACTAAGACATGAAGATGCTATGGGGTGTTCGA
Found at i:86894422 original size:45 final size:43
Alignment explanation
Indices: 86894242--86894443 Score: 131
Period size: 45 Copynumber: 4.6 Consensus size: 43
86894232 AAGATTACAG
* * * *
86894242 ATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGA
1 ATCTTGTCTCCCT-AAGTAGCAGTGGAATAGATCGAAGACAG-CA
* * * ** * *
86894287 ATCTTGTCTCCCTAACTAGTAGTGGAGTAGATTTAAGCCATC-
1 ATCTTGTCTCCCTAAGTAGCAGTGGAATAGATCGAAGACAGCA
* * * * * * *
86894329 ATCCTATCTCCCTAAGCAGTAGTGGAGTAG-GCTGAAGATTA-CA
1 ATCTTGTCTCCCTAAGTAGCAGTGGAATAGATC-GAAGA-CAGCA
*
86894372 GATCTTGTCTCCCTGAAGTTGCAGTGGAATAGATCGAAGACAGCGA
1 -ATCTTGTCTCCCT-AAGTAGCAGTGGAATAGATCGAAGACAGC-A
* *
86894418 ATCTTGTCTCCCTAACTAGTAGTGGA
1 ATCTTGTCTCCCTAAGTAGCAGTGGA
86894444 GCAGATTTAA
Statistics
Matches: 118, Mismatches: 31, Indels: 17
0.71 0.19 0.10
Matches are distributed among these distances:
42 30 0.25
43 1 0.01
44 40 0.34
45 45 0.38
46 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (43 bp):
ATCTTGTCTCCCTAAGTAGCAGTGGAATAGATCGAAGACAGCA
Found at i:86894841 original size:44 final size:44
Alignment explanation
Indices: 86894655--86894841 Score: 114
Period size: 44 Copynumber: 4.3 Consensus size: 44
86894645 CTAAAGTTGC
* *
86894655 AGTGGAACAGATCGAAGACAGTGAATCTTGTCTCCCTAACCAGT
1 AGTGGAGCAGATCGAAGACGGTGAATCTTGTCTCCCTAACCAGT
* ** **** * * *
86894699 AGTGGAGTAGATTTAAG-C-CACCATCCTATCTCCCTAAGCAGT
1 AGTGGAGCAGATCGAAGACGGTGAATCTTGTCTCCCTAACCAGT
* * * * * ***
86894741 AATGGAGTAG-GCTAA-A-GATTGCAGATCTTGTCTCCCTTAAGTTGT
1 AGTGGAGCAGATCGAAGACG-GTG-A-ATCTTGTCTCCC-TAACCAGT
*
86894786 AGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAACCAGT
1 AGTGGAGCAGATCGAAGACGGTGAATCTTGTCTCCCTAACCAGT
86894830 AGTGGAGCAGAT
1 AGTGGAGCAGAT
86894842 TTAAGCCACC
Statistics
Matches: 102, Mismatches: 32, Indels: 18
0.67 0.21 0.12
Matches are distributed among these distances:
41 3 0.03
42 26 0.25
43 1 0.01
44 39 0.38
45 25 0.25
46 4 0.04
47 3 0.03
48 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (44 bp):
AGTGGAGCAGATCGAAGACGGTGAATCTTGTCTCCCTAACCAGT
Found at i:86895077 original size:44 final size:44
Alignment explanation
Indices: 86895027--86895180 Score: 166
Period size: 44 Copynumber: 3.5 Consensus size: 44
86895017 AAGATTGTAG
* * * *
86895027 ATCTTGTCTCTCTGAAGTTGCAGTGGAGAAGATCAAAGCCGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGCAA
* ** * ** *
86895071 ATCTTGTCTCTTTGAAGTTGCAGTGGAGCAGATTGAAGTTGCGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGCAA
* *
86895115 ATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAGCCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGCAA
*
86895159 GTCTTATAC-CCCTGAAGTTGCA
1 ATCTTAT-CTCCCTGAAGTTGCA
86895181 AGAGAGCAGA
Statistics
Matches: 91, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
44 90 0.99
45 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGCAA
Found at i:86895080 original size:392 final size:393
Alignment explanation
Indices: 86894132--86895053 Score: 1382
Period size: 392 Copynumber: 2.3 Consensus size: 393
86894122 CCTAAGTAGT
* * * * *
86894132 AGTGGAGCAGATCGAAGATGGTGAATCTTGTCTTCCTAACCAGTAGTAGAGTAGATTTAAGCCAC
1 AGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGCCAC
* *
86894197 CATCCTACCTCCCTAAGCAGTAGTAGAGTAGGCTGAAGATTACAGATCTTGTCTCCCTGAAGTTG
66 CATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTGTCTCCCTGAAGTTG
* *
86894262 CAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAACTAGTAGTGGAGTAGATTTAAGCCA
131 CAGTGGAACAGATCGAAGACAGTGAATCTTGTCTCCCTAACCAGTAGTGGAGTAGATTTAAGCCA
* * *
86894327 TCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTGTCTCCCTGAAGTT
196 CCATCCTATCTCCCTAAGCAGTAATGGAGTAGGCTAAAGATTACAGATCTTGTCTCCCTGAAGTT
* *
86894392 GCAGTGGAATAGATCGAAGACAGCGAATCTTGTCTCCCTAACTAGTAGTGGAGCAGATTTAAGCC
261 GCAGTGGAACAGATCGAAGACAGCGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGCC
* * * * ** * *
86894457 ATCATCCTATCTCCCTAAGCAATAGTGGAGTAAGTTGAAGATTGTAGGTCTTGTCTTCCTGAAGT
326 ACCATCCTATCTCCCTAAGCAATAGTAGAGTAAGCTGAAGATTGCAAATCTCGTCTTCCTGAAGG
*
86894522 TGT
391 TGC
* ** *
86894525 AGTGGAGA-AGATCGAAG-CCGCAAATCTTGTCTCCCTAACCAATAGTGGAGCAGATTTAAGCCA
1 AGTGGA-ACAGATCGAAGACGGTGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGCCA
* * * *
86894588 CCATTCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTACAGATCTCGTCTCCCTAAAGTT
65 CCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTGTCTCCCTGAAGTT
86894653 GCAGTGGAACAGATCGAAGACAGTGAATCTTGTCTCCCTAACCAGTAGTGGAGTAGATTTAAGCC
130 GCAGTGGAACAGATCGAAGACAGTGAATCTTGTCTCCCTAACCAGTAGTGGAGTAGATTTAAGCC
* *
86894718 ACCATCCTATCTCCCTAAGCAGTAATGGAGTAGGCTAAAGATTGCAGATCTTGTCTCCCTTAAGT
195 ACCATCCTATCTCCCTAAGCAGTAATGGAGTAGGCTAAAGATTACAGATCTTGTCTCCCTGAAGT
* * *
86894783 TGTAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGC
260 TGCAGTGGAACAGATCGAAGACAGCGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGC
* * * * *
86894848 CACCATCCTATCTTCCTAAGCAGTAGTAGAGTAGGCTGAATATTGCAAATCTCGTC-TCCTTAGA
325 CACCATCCTATCTCCCTAAGCAATAGTAGAGTAAGCTGAAGATTGCAAATCTCGTCTTCCTGA-A
86894912 GGTGC
389 GGTGC
* * *
86894917 AGTGGAACAGATCGAAGACGGTGAATTTTGTCTCCCTAAGCAGTAGTGGAACAGATTTAAGCCAC
1 AGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGCCAC
** *
86894982 CATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGTCTCTCTGAAGTTG
66 CATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTGTCTCCCTGAAGTTG
86895047 CAGTGGA
131 CAGTGGA
86895054 GAAGATCAAA
Statistics
Matches: 470, Mismatches: 55, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
391 6 0.01
392 344 0.73
393 120 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (393 bp):
AGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGCCAC
CATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTACAGATCTTGTCTCCCTGAAGTTG
CAGTGGAACAGATCGAAGACAGTGAATCTTGTCTCCCTAACCAGTAGTGGAGTAGATTTAAGCCA
CCATCCTATCTCCCTAAGCAGTAATGGAGTAGGCTAAAGATTACAGATCTTGTCTCCCTGAAGTT
GCAGTGGAACAGATCGAAGACAGCGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGCC
ACCATCCTATCTCCCTAAGCAATAGTAGAGTAAGCTGAAGATTGCAAATCTCGTCTTCCTGAAGG
TGC
Found at i:86895104 original size:131 final size:131
Alignment explanation
Indices: 86894109--86895053 Score: 1358
Period size: 131 Copynumber: 7.2 Consensus size: 131
86894099 GGTGAATTCA
* * * * * *
86894109 CAGATCTTATCTCCCT-AAGTAGTAGTGGAGCAGATCGAAGATGGTGAATCTTGTCTTCCTAACC
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAACC
* * * *
86894173 AGTAGTAGAGTAGATTTAAGCCACCATCCTACCTCCCTAAGCAGTAGTAGAGTAGGCTGAAGATT
66 AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATT
*
86894238 A
131 G
*
86894239 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAACT
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAACC
* *
86894304 AGTAGTGGAGTAGATTTAAGCCATCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATT
66 AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATT
*
86894369 A
131 G
* * * *
86894370 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAATAGATCGAAGACAGCGAATCTTGTCTCCCTAACT
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAACC
* * * *
86894435 AGTAGTGGAGCAGATTTAAGCCATCATCCTATCTCCCTAAGCAATAGTGGAGTAAGTTGAAGATT
66 AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATT
86894500 G
131 G
* * * * * **
86894501 TAGGTCTTGTCTTCCTGAAGTTGTAGTGGAGA-AGATCGAAG-CCGCAAATCTTGTCTCCCTAAC
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGA-ACAGATCGAAGACGGTGAATCTTGTCTCCCTAAC
* * *
86894564 CAATAGTGGAGCAGATTTAAGCCACCATTCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGAT
65 CAGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGAT
*
86894629 TA
130 TG
* * *
86894631 CAGATCTCGTCTCCCTAAAGTTGCAGTGGAACAGATCGAAGACAGTGAATCTTGTCTCCCTAACC
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAACC
* * *
86894696 AGTAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAATGGAGTAGGCTAAAGATT
66 AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATT
86894761 G
131 G
* *
86894762 CAGATCTTGTCTCCCTTAAGTTGTAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAACC
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAACC
* * *
86894827 AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTTCCTAAGCAGTAGTAGAGTAGGCTGAATATT
66 AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATT
86894892 G
131 G
* * * * * *
86894893 CAAATCTCGTCT-CCTTAGAGGTGCAGTGGAACAGATCGAAGACGGTGAATTTTGTCTCCCTAAG
1 CAGATCTTGTCTCCCTGA-AGTTGCAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAAC
*
86894957 CAGTAGTGGAACAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGAT
65 CAGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGAT
86895022 TG
130 TG
* *
86895024 TAGATCTTGTCTCTCTGAAGTTGCAGTGGA
1 CAGATCTTGTCTCCCTGAAGTTGCAGTGGA
86895054 GAAGATCAAA
Statistics
Matches: 735, Mismatches: 74, Indels: 11
0.90 0.09 0.01
Matches are distributed among these distances:
129 1 0.00
130 131 0.18
131 599 0.81
132 4 0.01
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (131 bp):
CAGATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTAACC
AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATT
G
Found at i:86895132 original size:88 final size:88
Alignment explanation
Indices: 86895026--86895230 Score: 227
Period size: 88 Copynumber: 2.3 Consensus size: 88
86895016 GAAGATTGTA
* * * * **
86895026 GATCTTGTCTCTCTGAAGTTGCAGTGGAGAAGATCAAAGCCGCAAATCTTGT-CTCTTTGAAGTT
1 GATCTTATCTCCCTGAAGTTGCAGTGGAGAAGATCAAAGCCACAAATCTTATAC-CCCTGAAGTT
* *
86895090 GC-AGTGGAGCAGATTGAAG-TTGC
65 GCAAG-AGAGCAGATTGAAGTTTAC
* * * *
86895113 GAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAGCCACAAGTCTTATACCCCTGAAGTT
1 G-ATCTTATCTCCCTGAAGTTGCAGTGGAGAAGATCAAAGCCACAAATCTTATACCCCTGAAGTT
86895178 GCAAGAGAGCAGATTGAAGTTTAC
65 GCAAGAGAGCAGATTGAAGTTTAC
* * *
86895202 GACCTTATCTCCTTAAAGTTGCAGTGGAG
1 GATCTTATCTCCCTGAAGTTGCAGTGGAG
86895231 CAGACTGAAG
Statistics
Matches: 98, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
87 1 0.01
88 90 0.92
89 7 0.07
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (88 bp):
GATCTTATCTCCCTGAAGTTGCAGTGGAGAAGATCAAAGCCACAAATCTTATACCCCTGAAGTTG
CAAGAGAGCAGATTGAAGTTTAC
Found at i:86895232 original size:44 final size:43
Alignment explanation
Indices: 86895083--86895240 Score: 158
Period size: 44 Copynumber: 3.6 Consensus size: 43
86895073 CTTGTCTCTT
*
86895083 TGAAGTTGCAGTGGAGCAGATTGAAGTTGCGAATCTTATCTCCC
1 TGAAGTTGCAGTGGAGCAGATTGAAGTTACG-ATCTTATCTCCC
* * ** *
86895127 TGAAGTTGCGGTGGAGCAGATTAAAGCCACAAGTCTTATAC-CCC
1 TGAAGTTGCAGTGGAGCAGATTGAAGTTACGA-TCTTAT-CTCCC
* * *
86895171 TGAAGTTGCAAG-AGAGCAGATTGAAGTTTACGACCTTATCTCCT
1 TGAAGTTGC-AGTGGAGCAGATTGAAG-TTACGATCTTATCTCCC
* *
86895215 TAAAGTTGCAGTGGAGCAGACTGAAG
1 TGAAGTTGCAGTGGAGCAGATTGAAG
86895241 ATAGTGAATT
Statistics
Matches: 91, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
43 4 0.04
44 82 0.90
45 5 0.05
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (43 bp):
TGAAGTTGCAGTGGAGCAGATTGAAGTTACGATCTTATCTCCC
Found at i:86896737 original size:24 final size:25
Alignment explanation
Indices: 86896688--86896921 Score: 156
Period size: 24 Copynumber: 9.4 Consensus size: 25
86896678 CATTACATAC
*
86896688 TATTTTAAATTATTTTACATATTATT
1 TATTTTAAATT-TTTTATATATTATT
*
86896714 TATTTTAAGTTTTTTATATATATTATT
1 TATTTTAA-ATTTTT-TATATATTATT
* * *
86896741 TATTTTAAA-CTTTTACATATTATA
1 TATTTTAAATTTTTTATATATTATT
* * * *
86896765 TATTTTAAGTTTATGTACATA--ATG
1 TATTTTAAATTT-TTTATATATTATT
* * *
86896789 TAGTTTAAACTATTTTATATATTAGT
1 TATTTTAAA-TTTTTTATATATTATT
*** * *
86896815 TATTTTAAACCGTTT-TACATTGTT
1 TATTTTAAATTTTTTATATATTATT
*
86896839 TATTTTAAATATTTTT-T-TGTTATT
1 TATTTTAAAT-TTTTTATATATTATT
* * *
86896863 TTTTTTAACTATTTTATATATTATT
1 TATTTTAAATTTTTTATATATTATT
* * *
86896888 CACTTTAAATTTTTTATATAATATT
1 TATTTTAAATTTTTTATATATTATT
86896913 TATTTTAAA
1 TATTTTAAA
86896922 CTGTTTTTTG
Statistics
Matches: 156, Mismatches: 42, Indels: 21
0.71 0.19 0.10
Matches are distributed among these distances:
23 4 0.03
24 60 0.38
25 45 0.29
26 27 0.17
27 20 0.13
ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59
Consensus pattern (25 bp):
TATTTTAAATTTTTTATATATTATT
Found at i:86896768 original size:28 final size:27
Alignment explanation
Indices: 86896706--86896769 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 27
86896696 ATTATTTTAC
* **
86896706 ATATTATTTATTTTAAGTTTTTTATAT
1 ATATTATTTATTTTAACTTTTACATAT
86896733 ATATTATTTATTTTAAACTTTTACATAT
1 ATATTATTTATTTT-AACTTTTACATAT
86896761 -TATATATTT
1 ATAT-TATTT
86896770 TAAGTTTATG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 17 0.53
28 15 0.47
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (27 bp):
ATATTATTTATTTTAACTTTTACATAT
Found at i:86897178 original size:36 final size:36
Alignment explanation
Indices: 86897138--86897207 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
86897128 TTATACATTA
*
86897138 TTTATTTTATTTTTTATATATTATTTATGTTAAACT
1 TTTATTTTATTTTATATATATTATTTATGTTAAACT
* *
86897174 TTTATTTTATTTTATGTATATTATTTATTTTAAA
1 TTTATTTTATTTTATATATATTATTTATGTTAAA
86897208 TTTCTTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (36 bp):
TTTATTTTATTTTATATATATTATTTATGTTAAACT
Found at i:86897239 original size:25 final size:26
Alignment explanation
Indices: 86897191--86897242 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 26
86897181 TATTTTATGT
86897191 ATATTATTTATTTTAAATTTCTTTTTAA
1 ATATTATTTATTTTAAA--TCTTTTTAA
*
86897219 ATATTATTTATTTTAGA-CTTTTTA
1 ATATTATTTATTTTAAATCTTTTTA
86897243 TTTTAAATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 7 0.30
28 16 0.70
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (26 bp):
ATATTATTTATTTTAAATCTTTTTAA
Found at i:86897266 original size:24 final size:24
Alignment explanation
Indices: 86897239--86897298 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
86897229 TTTTAGACTT
**
86897239 TTTATTTTAAATTGTTTTGTAT-TA
1 TTTATTTTAAATTAATTT-TATGTA
*
86897263 TTTACTTTAAATTAATTTTATGGTA
1 TTTATTTTAAATTAATTTTAT-GTA
86897288 TTTATTTTAAA
1 TTTATTTTAAA
86897299 CCTTTTTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 3 0.10
24 15 0.50
25 12 0.40
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.62
Consensus pattern (24 bp):
TTTATTTTAAATTAATTTTATGTA
Found at i:86897553 original size:8 final size:8
Alignment explanation
Indices: 86897540--86897564 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
86897530 ATTTTTATTT
86897540 TCGTATCA
1 TCGTATCA
86897548 TCGTATCA
1 TCGTATCA
86897556 TCGTATCA
1 TCGTATCA
86897564 T
1 T
86897565 AAATTTAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (8 bp):
TCGTATCA
Found at i:86899892 original size:21 final size:21
Alignment explanation
Indices: 86899862--86899902 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
86899852 CGTTACTTTG
*
86899862 GTTTAATGATTTTGA-AAATC
1 GTTTAATGATATTGAGAAATC
86899882 GTTTATATGATATTGAGAAAT
1 GTTTA-ATGATATTGAGAAAT
86899903 GGTATAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.37, C:0.02, G:0.17, T:0.44
Consensus pattern (21 bp):
GTTTAATGATATTGAGAAATC
Found at i:86902246 original size:5 final size:5
Alignment explanation
Indices: 86902232--86902263 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
86902222 ATTTGTGTTC
86902232 TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
86902264 TTCACAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:86906698 original size:5 final size:5
Alignment explanation
Indices: 86906688--86906719 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
86906678 TTGTGTGTTC
86906688 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
86906720 TTCACAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:86906702 original size:9 final size:9
Alignment explanation
Indices: 86906688--86906718 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
86906678 TTGTGTGTTC
86906688 TTTATTTTA
1 TTTATTTTA
86906697 TTTATTTTA
1 TTTATTTTA
86906706 TTTTATTTTA
1 -TTTATTTTA
86906716 TTT
1 TTT
86906719 TTTCACAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:86909147 original size:19 final size:19
Alignment explanation
Indices: 86909123--86909171 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
86909113 TTTTTGGGCT
86909123 TAATGGGCCAAAAACGGGA
1 TAATGGGCCAAAAACGGGA
86909142 TAATGGGCCAAAAACGGGA
1 TAATGGGCCAAAAACGGGA
86909161 TAATGGGCCAA
1 TAATGGGCCAA
86909172 CGGACCCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.41, C:0.16, G:0.31, T:0.12
Consensus pattern (19 bp):
TAATGGGCCAAAAACGGGA
Found at i:86909490 original size:54 final size:53
Alignment explanation
Indices: 86909408--86909548 Score: 221
Period size: 54 Copynumber: 2.6 Consensus size: 53
86909398 TGGAGGAAGC
86909408 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCT-GTGGCTCTGCCACATATATCT
*
86909462 GTCCTGATGGCTATGCCACAATTATCTGATCTGATGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTG-TGGCTCTGCCACATATATCT
* *
86909516 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTG
86909549 GTGACTCCGT
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
53 7 0.09
54 74 0.91
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.34
Consensus pattern (53 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGTGGCTCTGCCACATATATCT
Found at i:86909549 original size:27 final size:27
Alignment explanation
Indices: 86909411--86909569 Score: 173
Period size: 27 Copynumber: 5.9 Consensus size: 27
86909401 AGGAAGCGTC
*
86909411 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* *
86909438 CTAGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
86909465 CTGATGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
86909492 CTGATGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
86909519 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* * *
86909546 CTGGTGACTCCGTCACAATATCTG
1 CTGGTGGCTCTGCCACAATATCTG
86909570 GTAGCCTCGC
Statistics
Matches: 113, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
26 9 0.08
27 102 0.90
28 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:86915714 original size:46 final size:46
Alignment explanation
Indices: 86915664--86915832 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 46
86915654 TGAGCATCCA
*
86915664 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
* * * * *
86915710 AACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCCG
* * *
86915757 AACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
* * *
86915803 AGCTCATTGAGTTGAGTCTGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
86915833 GGGGCGGGTT
Statistics
Matches: 99, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 54 0.55
47 28 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCG
Found at i:86915816 original size:93 final size:93
Alignment explanation
Indices: 86915657--86915827 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
86915647 GGATGGTTGA
* * *
86915657 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
86915722 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
* * * *
86915750 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
86915815 TGAGTCTGAGTTC
66 TGAGTCTGAGTTC
86915828 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCTGAGTTCGTGAGATGTAACTAG
Found at i:86926315 original size:22 final size:22
Alignment explanation
Indices: 86926288--86926330 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
86926278 CTTTTTCTTG
*
86926288 AAATAAAGATCGTTCATTTAAT
1 AAATAAAGATCGTTCAATTAAT
86926310 AAATAAAGATCGTTCAATTAA
1 AAATAAAGATCGTTCAATTAA
86926331 ATAAGTACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.33
Consensus pattern (22 bp):
AAATAAAGATCGTTCAATTAAT
Found at i:86927021 original size:37 final size:37
Alignment explanation
Indices: 86926971--86927086 Score: 196
Period size: 37 Copynumber: 3.1 Consensus size: 37
86926961 TTATTACGAA
* * * *
86926971 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
86927008 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
86927045 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
86927082 GTCTT
1 GTCTT
86927087 TAGAGCTCGG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:86927283 original size:47 final size:47
Alignment explanation
Indices: 86927205--86928181 Score: 1821
Period size: 47 Copynumber: 20.7 Consensus size: 47
86927195 CCCTTCGGGA
* * * * * *
86927205 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
86927252 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927299 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927346 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927393 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927440 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927487 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927534 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927581 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927628 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927675 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927722 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927769 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927816 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927863 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927910 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86927957 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86928004 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86928051 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86928098 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
86928147 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
86928182 AGAATCCTAA
Statistics
Matches: 914, Mismatches: 13, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
46 1 0.00
47 867 0.95
49 46 0.05
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:86939894 original size:16 final size:18
Alignment explanation
Indices: 86939862--86939895 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
86939852 GGGTTACAAC
86939862 TTTTTGACTGATTTGATG
1 TTTTTGACTGATTTGATG
86939880 TTTTT-ACTG-TTTGATG
1 TTTTTGACTGATTTGATG
86939896 AGTTTGATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.15, C:0.06, G:0.21, T:0.59
Consensus pattern (18 bp):
TTTTTGACTGATTTGATG
Found at i:86942010 original size:46 final size:45
Alignment explanation
Indices: 86941940--86942086 Score: 129
Period size: 46 Copynumber: 3.2 Consensus size: 45
86941930 ATACCATGCA
* * *
86941940 TGGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTT
1 TGGGACAT-GTATCGGCCTTGAGACGAGTGC-AGTGTTAGACATGTT
* * *
86941987 TGGGACATGTATCGGCCTCGAGACGCAAG-CCAGTGTTAGACATGTC
1 TGGGACATGTATCGGCCTTGAGACG--AGTGCAGTGTTAGACATGTT
* * * *
86942033 TGGCACATGTATTGG-CTATGAGATGTGT-CAGTGTTAGACCATGTT
1 TGGGACATGTATCGGCCT-TGAGACGAGTGCAGTGTTAGA-CATGTT
86942078 TGGGACATG
1 TGGGACATG
86942087 GCATCGACAC
Statistics
Matches: 82, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
44 11 0.13
45 15 0.18
46 45 0.55
47 9 0.11
48 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (45 bp):
TGGGACATGTATCGGCCTTGAGACGAGTGCAGTGTTAGACATGTT
Found at i:86949149 original size:30 final size:30
Alignment explanation
Indices: 86949091--86949149 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
86949081 ATTTTTGGGC
* **
86949091 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTACCAAAGT
86949121 CTAGGGGCAAAATGGTCATTTTACCAAAG
1 CTAGGGGCAAAATGGTCATTTTACCAAAG
86949150 ATATGAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:86949620 original size:44 final size:44
Alignment explanation
Indices: 86949537--86949620 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 44
86949527 CGTAAGCCAG
* *
86949537 TGTAAGACATGTCTAGGACATGCATCGGCTACGAGATATGTCAA
1 TGTAAGACATCTCTAGGACATGCATCGGCTACGAAATATGTCAA
86949581 TGTAAGACCATCTCTAGGACATGGCATCGGC-AC-AAATATG
1 TGTAAGA-CATCTCTAGGACAT-GCATCGGCTACGAAATATG
86949621 CTAGAACTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
44 13 0.36
45 15 0.42
46 8 0.22
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (44 bp):
TGTAAGACATCTCTAGGACATGCATCGGCTACGAAATATGTCAA
Found at i:86951503 original size:64 final size:64
Alignment explanation
Indices: 86951402--86951531 Score: 224
Period size: 64 Copynumber: 2.0 Consensus size: 64
86951392 ACCAAGGCAC
* * * *
86951402 TTGTGTTGTTTCAACTAGAGTCCGGTAAAGAATTTGTGATTTATAGTGATGTTTCATTGAATGG
1 TTGTGTTGGTTCAACTAGAGTCCGGAAAAGAATTTGTGATTTATAATGATGCTTCATTGAATGG
86951466 TTGTGTTGGTTCAACTAGAGTCCGGAAAAGAATTTGTGATTTATAATGATGCTTCATTGAATGG
1 TTGTGTTGGTTCAACTAGAGTCCGGAAAAGAATTTGTGATTTATAATGATGCTTCATTGAATGG
86951530 TT
1 TT
86951532 TGGGTTGTAT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.26, C:0.08, G:0.25, T:0.41
Consensus pattern (64 bp):
TTGTGTTGGTTCAACTAGAGTCCGGAAAAGAATTTGTGATTTATAATGATGCTTCATTGAATGG
Found at i:86954743 original size:13 final size:13
Alignment explanation
Indices: 86954698--86954743 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
86954688 TTCCAATTTT
86954698 TCTTCTTCTCTCCC
1 TCTTCTT-TCTCCC
* *
86954712 TCTTCCTTCTCTC
1 TCTTCTTTCTCCC
*
86954725 TATTCTTTCTCCC
1 TCTTCTTTCTCCC
86954738 TCTTCT
1 TCTTCT
86954744 CAATCAATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
13 20 0.77
14 6 0.23
ACGTcount: A:0.02, C:0.43, G:0.00, T:0.54
Consensus pattern (13 bp):
TCTTCTTTCTCCC
Found at i:86955730 original size:17 final size:19
Alignment explanation
Indices: 86955700--86955739 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
86955690 GCCATTTCTG
86955700 GGGCTGTGTGGG-CCACAT
1 GGGCTGTGTGGGCCCACAT
*
86955718 GGGC-GTGTTGGCCCACAT
1 GGGCTGTGTGGGCCCACAT
86955736 GGGC
1 GGGC
86955740 CCGAATGACT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.10, C:0.25, G:0.45, T:0.20
Consensus pattern (19 bp):
GGGCTGTGTGGGCCCACAT
Found at i:86961269 original size:28 final size:28
Alignment explanation
Indices: 86961238--86961294 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
86961228 CATAAGGAGA
86961238 TTGAATATTCTATCGAGGACTTCATGTT
1 TTGAATATTCTATCGAGGACTTCATGTT
*
86961266 TTGAATATTCTATCGGGGACTTCATGTT
1 TTGAATATTCTATCGAGGACTTCATGTT
86961294 T
1 T
86961295 CTTAAGGTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.44
Consensus pattern (28 bp):
TTGAATATTCTATCGAGGACTTCATGTT
Found at i:86966450 original size:39 final size:39
Alignment explanation
Indices: 86966368--86966467 Score: 139
Period size: 39 Copynumber: 2.6 Consensus size: 39
86966358 GAAATCCTTG
* *
86966368 TTATAATTTTTGTAATTATAA-TTTACGATCAAATATTA
1 TTATAATTATTGTAATTATAATTTTACGATCAAACATTA
* * *
86966406 TTATAATTATTGTAATTGTAATTTTTCGGTCAAACATTA
1 TTATAATTATTGTAATTATAATTTTACGATCAAACATTA
*
86966445 TTATAATTATGGTAATTATAATT
1 TTATAATTATTGTAATTATAATT
86966468 ATTATATTCG
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
38 19 0.35
39 35 0.65
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.50
Consensus pattern (39 bp):
TTATAATTATTGTAATTATAATTTTACGATCAAACATTA
Found at i:86969269 original size:41 final size:41
Alignment explanation
Indices: 86969121--86969256 Score: 191
Period size: 41 Copynumber: 3.3 Consensus size: 41
86969111 AATTGTTCCC
**
86969121 TGAATTGCACATACATGCCCCTGTTTGTACTTTTGTACCCT
1 TGAATTGCACATACATGCCCCTGTTTGTACTTCAGTACCCT
* * * * *
86969162 TAAATTGCACATACATGCCTCTGTTTGTACTCCGGTACCCC
1 TGAATTGCACATACATGCCCCTGTTTGTACTTCAGTACCCT
* *
86969203 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGCACCCT
1 TGAATTGCACATACATGCCCCTGTTTGTACTTCAGTACCCT
86969244 TGAATTGCACATA
1 TGAATTGCACATA
86969257 AGTGCCATTG
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 82 1.00
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.34
Consensus pattern (41 bp):
TGAATTGCACATACATGCCCCTGTTTGTACTTCAGTACCCT
Found at i:86969276 original size:82 final size:82
Alignment explanation
Indices: 86969118--86969276 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 82
86969108 GTTAATTGTT
** *
86969118 CCCTGAATTGCACATACATGCCCCTGTTTGTACTTTTGTACCCTTAAATTGCACATACATGCCTC
1 CCCTGAATTGCACATACATGCCCCTGTTTGTACTTCAGCACCCTTAAATTGCACATACATGCCTC
**
86969183 TGTTTGTACTCCGGTAC
66 TGTTTACACTCCGGTAC
* *
86969200 CCCTGAATTGCACATACGTGCCCCTGTTTGTACTTCAGCACCCTTGAATTGCACATA-AGTGCCA
1 CCCTGAATTGCACATACATGCCCCTGTTTGTACTTCAGCACCCTTAAATTGCACATACA-TGCC-
86969264 T-TGTTTACACTCC
64 TCTGTTTACACTCC
86969277 AGTAACTTTG
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
81 1 0.01
82 66 0.97
83 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.15, T:0.33
Consensus pattern (82 bp):
CCCTGAATTGCACATACATGCCCCTGTTTGTACTTCAGCACCCTTAAATTGCACATACATGCCTC
TGTTTACACTCCGGTAC
Found at i:86978384 original size:15 final size:15
Alignment explanation
Indices: 86978366--86978409 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
86978356 GAAGCCCAGA
86978366 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
86978381 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
*
86978396 ATAAGGAAATCCAA
1 ATAAAGAAATCCAA
86978410 TTTACAGCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:86983762 original size:32 final size:32
Alignment explanation
Indices: 86983726--86983829 Score: 109
Period size: 32 Copynumber: 3.0 Consensus size: 32
86983716 CCTTTTCATA
*
86983726 TTTCATATTGCATAACACTAGGCCGAAGCCTTTTTCAT
1 TTTCATATTGCATAACACTGGGCCGAAGCC----T--T
86983764 ATTTCATATTGCATAACACTGGGCCGAAGCCTT
1 -TTTCATATTGCATAACACTGGGCCGAAGCCTT
* **
86983797 TTTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTTCATATTGCATAACACTGGGCCGAAGCCTT
86983829 T
1 T
86983830 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
32 30 0.49
33 1 0.02
35 1 0.02
39 29 0.48
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (32 bp):
TTTCATATTGCATAACACTGGGCCGAAGCCTT
Found at i:86983770 original size:39 final size:39
Alignment explanation
Indices: 86983708--86983812 Score: 194
Period size: 39 Copynumber: 2.7 Consensus size: 39
86983698 ACATATACTG
86983708 GGCCGAAGCC-TTTTCATATTTCATATTGCATAACACTA
1 GGCCGAAGCCTTTTTCATATTTCATATTGCATAACACTA
*
86983746 GGCCGAAGCCTTTTTCATATTTCATATTGCATAACACTG
1 GGCCGAAGCCTTTTTCATATTTCATATTGCATAACACTA
86983785 GGCCGAAGCCTTTTTCATATTTCATATT
1 GGCCGAAGCCTTTTTCATATTTCATATT
86983813 ACTGGGCCGA
Statistics
Matches: 65, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
38 10 0.15
39 55 0.85
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (39 bp):
GGCCGAAGCCTTTTTCATATTTCATATTGCATAACACTA
Found at i:86984066 original size:25 final size:25
Alignment explanation
Indices: 86984038--86984124 Score: 104
Period size: 26 Copynumber: 3.4 Consensus size: 25
86984028 CTGGAGGCCT
*
86984038 AGCCTCTTTTAAT-AACTGGGGCATA
1 AGCC-CTTTTGATAAACTGGGGCATA
* *
86984063 AGCCCTTTTTGGTAAACTAGGGCATA
1 AGCCC-TTTTGATAAACTGGGGCATA
*
86984089 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTT-GATAAACTGGGGCATA
86984115 AGCCCTTTTG
1 AGCCCTTTTG
86984125 CACTTCCTCC
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
24 1 0.02
25 14 0.25
26 40 0.73
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCATA
Found at i:86984085 original size:26 final size:26
Alignment explanation
Indices: 86984051--86984123 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
86984041 CTCTTTTAAT
*
86984051 AACTGGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
86984077 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
86984103 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
86984124 GCACTTCCTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:86987834 original size:25 final size:25
Alignment explanation
Indices: 86987806--86987911 Score: 117
Period size: 25 Copynumber: 4.2 Consensus size: 25
86987796 TCGTTAGGGT
*
86987806 TACCGAATTATAGCTCGTGGGAGCA
1 TACCGAATTATAGCTCGTGAGAGCA
86987831 TACCG-ATATATAGCTCGTGAGAGCA
1 TACCGAAT-TATAGCTCGTGAGAGCA
* *
86987856 TACCAAATTATAGCTCGTGAAAGCA
1 TACCGAATTATAGCTCGTGAGAGCA
* * * *
86987881 TATCTG-ATTATAGCTTGAGATAGCA
1 TA-CCGAATTATAGCTCGTGAGAGCA
86987906 TACCGA
1 TACCGA
86987912 TCTTCAACTC
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
24 4 0.06
25 61 0.90
26 3 0.04
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (25 bp):
TACCGAATTATAGCTCGTGAGAGCA
Found at i:86987893 original size:50 final size:50
Alignment explanation
Indices: 86987806--86987909 Score: 129
Period size: 50 Copynumber: 2.1 Consensus size: 50
86987796 TCGTTAGGGT
* ** *
86987806 TACCGAATTATAGCTCGTGGGAGCATACCGATATATAGCTCGTGAGAGCA
1 TACCAAATTATAGCTCGTGAAAGCATACCGATATATAGCTCGAGAGAGCA
* * *
86987856 TACCAAATTATAGCTCGTGAAAGCATATCTGAT-TATAGCTTGAGATAGCA
1 TACCAAATTATAGCTCGTGAAAGCATA-CCGATATATAGCTCGAGAGAGCA
86987906 TACC
1 TACC
86987910 GATCTTCAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
50 42 0.91
51 4 0.09
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (50 bp):
TACCAAATTATAGCTCGTGAAAGCATACCGATATATAGCTCGAGAGAGCA
Found at i:86988794 original size:9 final size:10
Alignment explanation
Indices: 86988772--86988804 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
86988762 TTATAATAAA
86988772 TTTTGATTAT
1 TTTTGATTAT
86988782 TTTTGATTAT
1 TTTTGATTAT
86988792 TTTTGATTGAT
1 TTTTGATT-AT
86988803 TT
1 TT
86988805 GCACAAAGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 18 0.82
11 4 0.18
ACGTcount: A:0.18, C:0.00, G:0.12, T:0.70
Consensus pattern (10 bp):
TTTTGATTAT
Found at i:86993725 original size:43 final size:43
Alignment explanation
Indices: 86993677--86993824 Score: 149
Period size: 43 Copynumber: 3.4 Consensus size: 43
86993667 TGTAGTTTCA
*
86993677 TGTAAGACCATGTCTGGGACATTAGCATTGTATTGTGATTACG
1 TGTAAGACCATGTCTGGGACATTAGCATCGTATTGTGATTACG
* * ** *
86993720 TGTAAGACCATGTGTGGGACATTGGCATCGCTA-CATGATTTCG
1 TGTAAGACCATGTCTGGGACATTAGCATCG-TATTGTGATTACG
* * * *
86993763 TGTAAGACCATGTTTGGGACA-TAGGCATCG-ATATGTGGTAACA
1 TGTAAGACCATGTCTGGGACATTA-GCATCGTAT-TGTGATTACG
*
86993806 TGTAAGACCATATCTGGGA
1 TGTAAGACCATGTCTGGGA
86993825 TATGGCATTG
Statistics
Matches: 85, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 81 0.95
44 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTAGCATCGTATTGTGATTACG
Found at i:86993824 original size:86 final size:85
Alignment explanation
Indices: 86993672--86993832 Score: 200
Period size: 86 Copynumber: 1.9 Consensus size: 85
86993662 TGAGATGTAG
* * * * *
86993672 TTTCATGTAAGACCATGTCTGGGACATTAGCATTGTATTGTGATTACGTGTAAGACCATGTGTGG
1 TTTCATGTAAGACCATGTCTGGGACATTAGCATCGTATTGTGATAACATGTAAGACCATATCTGG
86993737 GACATTGGCATCGCTACATGA
66 GACA-TGGCATCGCTACATGA
* * *
86993758 TTTCGTGTAAGACCATGTTTGGGACA-TAGGCATCG-ATATGTGGTAACATGTAAGACCATATCT
1 TTTCATGTAAGACCATGTCTGGGACATTA-GCATCGTAT-TGTGATAACATGTAAGACCATATCT
*
86993821 GGGATATGGCAT
64 GGGACATGGCAT
86993833 TGTAAGAGTT
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
85 10 0.16
86 54 0.84
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (85 bp):
TTTCATGTAAGACCATGTCTGGGACATTAGCATCGTATTGTGATAACATGTAAGACCATATCTGG
GACATGGCATCGCTACATGA
Found at i:86998630 original size:57 final size:56
Alignment explanation
Indices: 86998564--86998673 Score: 202
Period size: 57 Copynumber: 1.9 Consensus size: 56
86998554 ACAGGCTGGA
86998564 CGCGAGCCATAAGGGCTTGTGACACAGCCGTGTGGCCTAACACAGGTCTCACANGGC
1 CGCGAGCCATAAGGGCTTGTGACACAGCCGTGTGGCCTAACACAGGTCTCACA-GGC
*
86998621 CGCGAGCCATATGGGCTTGTGACACAGCCGTGTGGCCTAACACAGGTCTCACA
1 CGCGAGCCATAAGGGCTTGTGACACAGCCGTGTGGCCTAACACAGGTCTCACA
86998674 CGGTCGTTCC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.17
Consensus pattern (56 bp):
CGCGAGCCATAAGGGCTTGTGACACAGCCGTGTGGCCTAACACAGGTCTCACAGGC
Found at i:86999095 original size:19 final size:20
Alignment explanation
Indices: 86999063--86999100 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
86999053 TAGTTATTAT
*
86999063 TTATTTATTTATTT-TTCTG
1 TTATTTATTAATTTGTTCTG
*
86999082 TTATTTCTTAATTTGTTCT
1 TTATTTATTAATTTGTTCT
86999101 TCCATTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.16, C:0.08, G:0.05, T:0.71
Consensus pattern (20 bp):
TTATTTATTAATTTGTTCTG
Found at i:87000592 original size:21 final size:21
Alignment explanation
Indices: 87000553--87000592 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
87000543 CTGTGCTCAG
* *
87000553 AGGTTCGACAGTCTTGATGCA
1 AGGTTCGACAGTATCGATGCA
*
87000574 AGGTTTGACAGTATCGATG
1 AGGTTCGACAGTATCGATG
87000593 AGACTTTGTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (21 bp):
AGGTTCGACAGTATCGATGCA
Found at i:87011049 original size:43 final size:42
Alignment explanation
Indices: 87010999--87011144 Score: 152
Period size: 43 Copynumber: 3.4 Consensus size: 42
87010989 TCGAGATGTA
*
87010999 ATTACATGTAAGACCATGTCTAGGACATTAGAATTGTATTGTG
1 ATTACATGTAAGACCATGTCTAGGACATT-GAATAGTATTGTG
* * * * * *
87011042 ATTACATGTAAGATCATGTTTGGGACATTGGCATCGT-TATATG
1 ATTACATGTAAGACCATGTCTAGGACATT-GAATAGTAT-TGTG
*
87011085 ATTTCATGTAAGACCATGTCTAGGACATTGACATCAGTA-TGTG
1 ATTACATGTAAGACCATGTCTAGGACATTGA-AT-AGTATTGTG
*
87011128 ATAACATGTAAGACCAT
1 ATTACATGTAAGACCAT
87011145 ATCTGGGATA
Statistics
Matches: 83, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
42 2 0.02
43 79 0.95
44 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.34
Consensus pattern (42 bp):
ATTACATGTAAGACCATGTCTAGGACATTGAATAGTATTGTG
Found at i:87011152 original size:86 final size:85
Alignment explanation
Indices: 87011003--87011160 Score: 221
Period size: 86 Copynumber: 1.8 Consensus size: 85
87010993 GATGTAATTA
* * * * *
87011003 CATGTAAGACCATGTCTAGGACATTAGAATTGTATTGTGATTACATGTAAGATCATGTTTGGGAC
1 CATGTAAGACCATGTCTAGGACATTAGAATAGTATTGTGATAACATGTAAGACCATATCTGGGAC
87011068 ATTGGCATCGTTATATGATTT
66 A-TGGCATCGTTATATGATTT
87011089 CATGTAAGACCATGTCTAGGACATT-GACATCAGTA-TGTGATAACATGTAAGACCATATCTGGG
1 CATGTAAGACCATGTCTAGGACATTAGA-AT-AGTATTGTGATAACATGTAAGACCATATCTGGG
*
87011152 ATATGGCAT
64 ACATGGCAT
87011161 TGTAAGAGCT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
85 8 0.12
86 53 0.83
87 3 0.05
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (85 bp):
CATGTAAGACCATGTCTAGGACATTAGAATAGTATTGTGATAACATGTAAGACCATATCTGGGAC
ATGGCATCGTTATATGATTT
Found at i:87016591 original size:20 final size:20
Alignment explanation
Indices: 87016566--87016608 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
87016556 AAAAGTGAGA
87016566 AAAGTTTTGTTCCCAAGAGT
1 AAAGTTTTGTTCCCAAGAGT
87016586 AAAGTTTTGTTCCCAAGAGT
1 AAAGTTTTGTTCCCAAGAGT
87016606 AAA
1 AAA
87016609 TACTCAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (20 bp):
AAAGTTTTGTTCCCAAGAGT
Found at i:87016949 original size:23 final size:23
Alignment explanation
Indices: 87016910--87016958 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
87016900 TAGTTTATCA
87016910 ATATTTTGATTTGATTTTTAAT-T
1 ATATTTTGATTTGA-TTTTAATAT
*
87016933 ATATTTT-ATTATTATTTTAATAT
1 ATATTTTGATT-TGATTTTAATAT
87016956 ATA
1 ATA
87016959 CAGAAAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (23 bp):
ATATTTTGATTTGATTTTAATAT
Found at i:87020949 original size:30 final size:30
Alignment explanation
Indices: 87020894--87020950 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
87020884 GATTAGTATG
* **
87020894 TTTAAATAAATAATTTTTCTCATATTTCTT
1 TTTAAATAAATAATTTATCGAATATTTCTT
*
87020924 TTTAAATAAATAATTTATGGAATATTT
1 TTTAAATAAATAATTTATCGAATATTT
87020951 TTGGGATTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.53
Consensus pattern (30 bp):
TTTAAATAAATAATTTATCGAATATTTCTT
Found at i:87021340 original size:16 final size:15
Alignment explanation
Indices: 87021313--87021346 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
87021303 ATAACTAGTA
*
87021313 TATAATTATATTTAT
1 TATAATTATATTAAT
87021328 TATAATATATATTAAT
1 TATAAT-TATATTAAT
87021344 TAT
1 TAT
87021347 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:87027382 original size:40 final size:40
Alignment explanation
Indices: 87027308--87027388 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 40
87027298 NNNNNNNNNN
* *
87027308 GTGCGAGTTACTAAATCCGGGTTAAGTCCTGAAGGCATTT
1 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
87027348 GTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTT
1 GTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTT
87027388 G
1 G
87027389 AACGAGTAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 34 0.92
41 3 0.08
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (40 bp):
GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
Found at i:87041173 original size:47 final size:47
Alignment explanation
Indices: 87041121--87042887 Score: 3417
Period size: 47 Copynumber: 37.6 Consensus size: 47
87041111 GATAATTGTG
* *
87041121 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041168 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041215 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041262 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041309 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041356 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041403 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041450 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041497 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041544 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041591 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041638 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041685 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041732 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041779 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041826 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041873 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041920 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87041967 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042014 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042061 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042108 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042155 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
87042202 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
87042251 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042298 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042345 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042392 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042439 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042486 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042533 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042580 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042627 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042674 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042721 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
87042768 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
87042815 ATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
87042862 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
87042888 TCCCGAAGGG
Statistics
Matches: 1706, Mismatches: 12, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
47 1660 0.97
49 46 0.03
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:87043062 original size:37 final size:37
Alignment explanation
Indices: 87043006--87043084 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
87042996 CCGAGCTCTA
* * *
87043006 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
87043043 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
87043080 AAGAC
1 AAGAC
87043085 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:87045013 original size:79 final size:82
Alignment explanation
Indices: 87044877--87045059 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 82
87044867 TCGAATGATG
* *
87044877 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
87044941 TGTGCGAGTTACTA-AA
66 TGTGCGAGTTACTATAA
* * * **
87044957 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
87045019 TTGTGCGAGTTGCTATAA
65 TTGTGCGAGTTACTATAA
* *
87045037 -CTGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
87045060 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.64
80 31 0.35
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATAA
Found at i:87045068 original size:40 final size:40
Alignment explanation
Indices: 87044877--87045061 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
87044867 TCGAATGATG
* * * *
87044877 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
87044917 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
87044957 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
87044996 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
87045037 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87045062 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:87045083 original size:79 final size:79
Alignment explanation
Indices: 87044930--87045094 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
87044920 GGACTAAGAT
**
87044930 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
87044995 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
87045009 CCGAAGGCATTTGTGCGAGTTGCTATAA-CTGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
87045072 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
87045088 CCGAAGG
1 CCGAAGG
87045095 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
79 48 0.65
80 26 0.35
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:87051055 original size:30 final size:30
Alignment explanation
Indices: 87051021--87051080 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
87051011 ATCAGCCACA
*
87051021 ACCATGATAT-ATACAC-ATCATTCATATACT
1 ACCAT-ATATCATACACAAACA-TCATATACT
*
87051051 ACCATCTATCATACACAAACATCATATACT
1 ACCATATATCATACACAAACATCATATACT
87051081 CATCAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
29 3 0.12
30 20 0.77
31 3 0.12
ACGTcount: A:0.42, C:0.27, G:0.02, T:0.30
Consensus pattern (30 bp):
ACCATATATCATACACAAACATCATATACT
Found at i:87060517 original size:38 final size:38
Alignment explanation
Indices: 87060457--87060570 Score: 174
Period size: 38 Copynumber: 3.0 Consensus size: 38
87060447 GGAATGGAAA
*
87060457 AACGTGGTGCTAAATGGATATACCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGT
* * *
87060495 AATGTGGTGCTAAGTGGGTATACCACGATTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGT
* *
87060533 AACGTGGTGCTAAGTGGATATGCCACGGTTATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGT
87060571 TAATTTGAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 67 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (38 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTAAACATGT
Found at i:87069463 original size:21 final size:21
Alignment explanation
Indices: 87069439--87069487 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 21
87069429 GAACTAAGAG
87069439 AATTTT-AAGCAAAATTTCTAA
1 AATTTTCAA-CAAAATTTCTAA
87069460 AATTTTCAACAAAATTTCTAA
1 AATTTTCAACAAAATTTCTAA
87069481 AATTTTC
1 AATTTTC
87069488 CTAGATGTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.41
Consensus pattern (21 bp):
AATTTTCAACAAAATTTCTAA
Found at i:87075108 original size:18 final size:20
Alignment explanation
Indices: 87075085--87075125 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
87075075 GTTTTCATCA
87075085 TATTCCC-TT-TCATTATTT
1 TATTCCCATTCTCATTATTT
*
87075103 TATTCCCATTCTCCTTATTT
1 TATTCCCATTCTCATTATTT
87075123 TAT
1 TAT
87075126 CATACTTCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 2 0.10
20 11 0.55
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.59
Consensus pattern (20 bp):
TATTCCCATTCTCATTATTT
Found at i:87081710 original size:47 final size:47
Alignment explanation
Indices: 87081647--87081746 Score: 182
Period size: 47 Copynumber: 2.1 Consensus size: 47
87081637 CCCTTCGGGA
*
87081647 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
*
87081694 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
87081741 CTTATC
1 CTTATC
87081747 TCATCAAGTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:87087031 original size:24 final size:22
Alignment explanation
Indices: 87087004--87087057 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 22
87086994 CAATTAAAGA
*
87087004 TGAATTGAAATGAGACTATGATAT
1 TGAATTGAAATGAGA-TATGA-AC
* *
87087028 TGAATGCGAAATGATATATGAAC
1 TGAAT-TGAAATGAGATATGAAC
87087051 TGAATTG
1 TGAATTG
87087058 TATAATGTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 1 0.04
23 6 0.24
24 10 0.40
25 8 0.32
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (22 bp):
TGAATTGAAATGAGATATGAAC
Found at i:87096169 original size:26 final size:26
Alignment explanation
Indices: 87096131--87096182 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
87096121 AACATGGCAA
87096131 CACTTGTAACATAAGAATAAAACATT
1 CACTTGTAACATAAGAATAAAACATT
*
87096157 CACTTGTACCATAAGAATAAAACATT
1 CACTTGTAACATAAGAATAAAACATT
87096183 AAAACATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.48, C:0.17, G:0.08, T:0.27
Consensus pattern (26 bp):
CACTTGTAACATAAGAATAAAACATT
Found at i:87101503 original size:18 final size:18
Alignment explanation
Indices: 87101477--87101531 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
87101467 GTTCGTGACA
* *
87101477 TTGGCTTGTTCACCACAT
1 TTGGATTGTTCGCCACAT
*
87101495 TTGGATTGTTTGCCACAT
1 TTGGATTGTTCGCCACAT
* *
87101513 TTGGACTGTCCGCCACAT
1 TTGGATTGTTCGCCACAT
87101531 T
1 T
87101532 GGCTTGCACT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.16, C:0.25, G:0.20, T:0.38
Consensus pattern (18 bp):
TTGGATTGTTCGCCACAT
Found at i:87101579 original size:29 final size:29
Alignment explanation
Indices: 87101525--87101600 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 29
87101515 GGACTGTCCG
* * *
87101525 CCACATTGGCTTGCAC-TGGGATTGTTCA
1 CCACTTTGACTTGCACTTTGGATTGTTCA
* *
87101553 CCACTTTGACTTGTACTTTGGATTGTTCG
1 CCACTTTGACTTGCACTTTGGATTGTTCA
* *
87101582 TCACTTTGGCTTGCACTTT
1 CCACTTTGACTTGCACTTT
87101601 TGGCTTGTCT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 13 0.33
29 26 0.67
ACGTcount: A:0.14, C:0.24, G:0.21, T:0.41
Consensus pattern (29 bp):
CCACTTTGACTTGCACTTTGGATTGTTCA
Found at i:87105334 original size:48 final size:48
Alignment explanation
Indices: 87105261--87105360 Score: 173
Period size: 48 Copynumber: 2.1 Consensus size: 48
87105251 GAGAGCTGTA
**
87105261 AGAATGTGAATGACAATAACATATTGCAAACATCAAATAGCTTGTCAG
1 AGAATGTGAATGACAATAACATATTGCAAACATCAAATAGCCGGTCAG
*
87105309 AGAATGTGAATGACAATAACGTATTGCAAACATCAAATAGCCGGTCAG
1 AGAATGTGAATGACAATAACATATTGCAAACATCAAATAGCCGGTCAG
87105357 AGAA
1 AGAA
87105361 AGAGTCCCAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.22
Consensus pattern (48 bp):
AGAATGTGAATGACAATAACATATTGCAAACATCAAATAGCCGGTCAG
Found at i:87108926 original size:25 final size:25
Alignment explanation
Indices: 87108898--87108947 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
87108888 ACCACTCTTC
*
87108898 ACTTTCACTATTTTGT-TCACTTAAT
1 ACTTTCACTATATTGTGT-ACTTAAT
87108923 ACTTTCACTATATTGTGTACTTAAT
1 ACTTTCACTATATTGTGTACTTAAT
87108948 GTTTCATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.26, C:0.18, G:0.06, T:0.50
Consensus pattern (25 bp):
ACTTTCACTATATTGTGTACTTAAT
Found at i:87123043 original size:40 final size:40
Alignment explanation
Indices: 87122988--87123258 Score: 388
Period size: 40 Copynumber: 6.8 Consensus size: 40
87122978 NGATATAGCT
*
87122988 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
87123028 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
87123068 ACTTGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
87123107 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
87123147 ACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
87123186 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
*
87123226 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
87123259 CATCATTCGA
Statistics
Matches: 208, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
38 2 0.01
39 68 0.33
40 127 0.61
41 11 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:87123129 original size:79 final size:80
Alignment explanation
Indices: 87122992--87123258 Score: 407
Period size: 79 Copynumber: 3.4 Consensus size: 80
87122982 ATAGCTACTC
* * *
87122992 GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACC
1 GCACCAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACC
87123057 CGGATTTAGTAACTT
66 CGGATTTAGTAACTT
87123072 GCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACC
1 GCACCAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACC
*
87123136 CGGATTTAGTAACTC
66 CGGATTTAGTAACTT
**
87123151 GCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 GCACCAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAAC
* *
87123214 CCGGATATAGTCACTT
65 CCGGATTTAGTAACTT
*
87123230 AGCA-CAAAGCCTTCGGGACTTAGCCCGGA
1 -GCACCAATGCCTTCGGGACTTAGCCCGGA
87123259 CATCATTCGA
Statistics
Matches: 174, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
78 3 0.02
79 141 0.81
80 30 0.17
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
GCACCAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACC
CGGATTTAGTAACTT
Found at i:87123212 original size:119 final size:119
Alignment explanation
Indices: 87122979--87123258 Score: 406
Period size: 119 Copynumber: 2.4 Consensus size: 119
87122969 NNNNNNNNNN
87122979 GATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCC
1 GATATAG-TAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCC
* * *
87123043 TTCGGGACTTAACCCGGATTTAGTAACTTGCACCAATGCCTTCGGGCTTAGCCCG
65 TTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCG
*
87123098 GA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCC
1 GATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCC
* * *
87123162 TTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
65 TTCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCG
* * *
87123217 GATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 GATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGA
87123259 CATCATTCGA
Statistics
Matches: 146, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
118 36 0.25
119 101 0.69
120 9 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
GATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCT
TCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCG
Found at i:87127977 original size:24 final size:24
Alignment explanation
Indices: 87127950--87127996 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
87127940 GTTCTAAATG
*
87127950 TTTTGGTAATGTTCCGTAACCCTA
1 TTTTGGTAATGCTCCGTAACCCTA
87127974 TTTTGGTAATGCTCCGTAACCCT
1 TTTTGGTAATGCTCCGTAACCCT
87127997 GTTCTGACGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.40
Consensus pattern (24 bp):
TTTTGGTAATGCTCCGTAACCCTA
Found at i:87129363 original size:18 final size:17
Alignment explanation
Indices: 87129335--87129368 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
87129325 AAAAGAAACT
*
87129335 AAACTAAAAACGAAAGA
1 AAACTAAAAACCAAAGA
87129352 AAACTAAAAAACCAAAG
1 AAACT-AAAAACCAAAG
87129369 TCTGTAACAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.71, C:0.15, G:0.09, T:0.06
Consensus pattern (17 bp):
AAACTAAAAACCAAAGA
Found at i:87130752 original size:27 final size:27
Alignment explanation
Indices: 87130722--87130899 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87130712 ATATTGAGTC
* * * *
87130722 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
87130749 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87130776 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
87130804 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
87130831 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
87130858 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87130885 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87130900 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Done.