Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 26 of 290
Found at i:8798159 original size:54 final size:54
Alignment explanation
Indices: 8798097--8798201 Score: 183
Period size: 54 Copynumber: 1.9 Consensus size: 54
8798087 ACGTAAATAA
8798097 AAGGATGTCCAGTTCACCAGAAGAAAATCAAACTTTCAAAACGGGTGGCCACTT
1 AAGGATGTCCAGTTCACCAGAAGAAAATCAAACTTTCAAAACGGGTGGCCACTT
* * *
8798151 AAGGATGTCTAGTTCACCAGAAGAAAATTAAACTTTCAGAACGGGTGGCCA
1 AAGGATGTCCAGTTCACCAGAAGAAAATCAAACTTTCAAAACGGGTGGCCA
8798202 TTCTGAATTC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (54 bp):
AAGGATGTCCAGTTCACCAGAAGAAAATCAAACTTTCAAAACGGGTGGCCACTT
Found at i:8798629 original size:54 final size:54
Alignment explanation
Indices: 8798540--8799457 Score: 1768
Period size: 54 Copynumber: 17.0 Consensus size: 54
8798530 CGAGGCTGCT
* * * *
8798540 AGATAT-TGTGACAGAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAAC
1 AGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGAC
8798593 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8798647 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8798701 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8798755 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8798809 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8798863 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8798917 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8798971 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8799025 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8799079 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8799133 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8799187 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8799241 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8799295 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8799349 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
*
8799403 AGATATATGTGGCAGAGCCACCAGATCAAATAATTGTGGCATAGCCACCAGGAC
1 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
8799457 A
1 A
8799458 CTTCCTCCAT
Statistics
Matches: 858, Mismatches: 5, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
53 11 0.01
54 847 0.99
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.19
Consensus pattern (54 bp):
AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
Found at i:8801613 original size:27 final size:27
Alignment explanation
Indices: 8801571--8801729 Score: 191
Period size: 27 Copynumber: 5.9 Consensus size: 27
8801561 GTGAGGCTGC
* *
8801571 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
8801598 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
8801624 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
8801651 CAGATAATCGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
8801678 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
8801705 CAAATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
8801730 GACGCTTCCT
Statistics
Matches: 115, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
26 10 0.09
27 101 0.88
28 4 0.03
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:8801730 original size:54 final size:54
Alignment explanation
Indices: 8801571--8801732 Score: 247
Period size: 54 Copynumber: 3.0 Consensus size: 54
8801561 GTGAGGCTGC
* * * *
8801571 CAGATAT-TGTGACAGAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGA
*
8801624 CAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
*
8801678 CAGATATATGTGGCAGAGCCACCAGATCAAATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
8801732 C
1 C
8801733 GCTTCCTCCA
Statistics
Matches: 100, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 12 0.12
54 88 0.88
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
Found at i:8803382 original size:26 final size:26
Alignment explanation
Indices: 8803351--8803406 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
8803341 TGAAATGCCC
8803351 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
8803377 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
8803403 ATCA
1 ATCA
8803407 ATTTTTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:8804884 original size:44 final size:44
Alignment explanation
Indices: 8804834--8804922 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
8804824 TCAGCTTTCA
* *
8804834 CTTGCTGGCATGTCAGACATTTCCCTACCAACTCCGTTACTTCT
1 CTTGCTGGCATGTCAAACATTTCCCTACAAACTCCGTTACTTCT
8804878 CTTGCTGGCATGTCAAACATTTCCCTACAAACTCCGTTACTTCT
1 CTTGCTGGCATGTCAAACATTTCCCTACAAACTCCGTTACTTCT
8804922 C
1 C
8804923 GTTTAAGTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.34
Consensus pattern (44 bp):
CTTGCTGGCATGTCAAACATTTCCCTACAAACTCCGTTACTTCT
Found at i:8809733 original size:119 final size:120
Alignment explanation
Indices: 8809551--8809773 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
8809541 TCCTCGTTCA
*
8809551 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
8809616 TTAGTAAC-TCGCACAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCAGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
8809671 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * * *
8809733 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCAGGACTTAACCCGGA
8809774 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:8809773 original size:40 final size:40
Alignment explanation
Indices: 8809549--8809773 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
8809539 GCTCCTCGTT
* *
8809549 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
8809589 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
8809629 CAAATGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
8809669 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
8809708 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
8809749 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
8809774 CATCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 117 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:8816493 original size:42 final size:42
Alignment explanation
Indices: 8816434--8816516 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
8816424 ACATAATTTA
*
8816434 ATCACTATTTAATTCCCTTCCTACTATTTTTAGTGATTTTCC
1 ATCACTATTTAATTCCCTTCCTACAATTTTTAGTGATTTTCC
8816476 ATCACTATTTAATTCCCTTCCTACAATTTTTAGTGATTTTC
1 ATCACTATTTAATTCCCTTCCTACAATTTTTAGTGATTTTC
8816517 TAAATCTACA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.23, C:0.23, G:0.05, T:0.49
Consensus pattern (42 bp):
ATCACTATTTAATTCCCTTCCTACAATTTTTAGTGATTTTCC
Found at i:8817391 original size:39 final size:40
Alignment explanation
Indices: 8817230--8817453 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
8817220 GCTACTCGTT
* * *
8817230 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
8817270 CAAATGCCCTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
8817310 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
8817350 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
8817389 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
8817430 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
8817454 CATCATTCAA
Statistics
Matches: 162, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 48 0.30
40 103 0.64
41 9 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:8817414 original size:79 final size:80
Alignment explanation
Indices: 8817230--8817451 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 80
8817220 GCTACTCGTT
* * * *
8817230 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCCTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* *
8817294 GATTTAGTAACTCGCA
65 AAATTAGTAACTCGCA
*
8817310 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
*
8817374 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * *
8817389 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
8817450 CG
63 CG
8817452 GACATCATTC
Statistics
Matches: 125, Mismatches: 12, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
78 12 0.10
79 57 0.46
80 54 0.43
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
AATTAGTAACTCGCA
Found at i:8841159 original size:19 final size:20
Alignment explanation
Indices: 8841135--8841172 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
8841125 GGTACCACCA
8841135 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
8841154 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
8841173 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:8841530 original size:93 final size:93
Alignment explanation
Indices: 8841402--8841572 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
8841392 GCCCCTAAGT
* *
8841402 GAACTCGGACTCTACTCAACGAGCTCAGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
8841467 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
8841495 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
8841559 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
8841573 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:8841567 original size:46 final size:46
Alignment explanation
Indices: 8841397--8841569 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
8841387 AACCCGCCCC
* * *
8841397 TAAGTGAACTCGGACTCTACTCAACGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
* *
8841443 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
8841491 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
8841536 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
8841570 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 57 0.53
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:8841588 original size:46 final size:44
Alignment explanation
Indices: 8841447--8841588 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 44
8841437 CATCCATAAA
8841447 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AG
* * * *
8841494 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAG
8841540 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAG
8841586 TGA
1 TGA
8841589 CATGTCATTT
Statistics
Matches: 79, Mismatches: 9, Indels: 15
0.77 0.09 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.42
47 31 0.39
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (44 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAG
Found at i:8842071 original size:49 final size:50
Alignment explanation
Indices: 8841982--8842079 Score: 171
Period size: 49 Copynumber: 2.0 Consensus size: 50
8841972 TCAAAACAGT
8841982 ATTTAATACGAACTTCAAAATAATTACACTTTTGCCCCTAAACTTTTGCC
1 ATTTAATACGAACTTCAAAATAATTACACTTTTGCCCCTAAACTTTTGCC
* *
8842032 ATTTAATACGAACTTTAAAA-AATTACACTTTTGCTCCTAAACTTTTGC
1 ATTTAATACGAACTTCAAAATAATTACACTTTTGCCCCTAAACTTTTGC
8842080 ATAATTACAC
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 27 0.59
50 19 0.41
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (50 bp):
ATTTAATACGAACTTCAAAATAATTACACTTTTGCCCCTAAACTTTTGCC
Found at i:8842315 original size:54 final size:54
Alignment explanation
Indices: 8842233--8842340 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
8842223 CAATTAAGCC
* *
8842233 CTTTTACTCGTTTGCACTCAAAATCGAGTAGCAAAAGTTGTCTAACATAATTTA
1 CTTTTACTCGTTTGCACTAAAAACCGAGTAGCAAAAGTTGTCTAACATAATTTA
* *
8842287 CTTTTACTCGTTTTCACTAAAAACCGAGTAGCACAAGTTGTCTAACATAATTTA
1 CTTTTACTCGTTTGCACTAAAAACCGAGTAGCAAAAGTTGTCTAACATAATTTA
8842341 AAACCCCATA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (54 bp):
CTTTTACTCGTTTGCACTAAAAACCGAGTAGCAAAAGTTGTCTAACATAATTTA
Found at i:8846700 original size:39 final size:39
Alignment explanation
Indices: 8846657--8846732 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
8846647 AAATCTCGAG
* *
8846657 TTCCCTACACTGGCTGCCGAAGTAGTCTGGGATTTAGTA
1 TTCCCTACACTGGCTGCAGAAGTAGTCTGAGATTTAGTA
*
8846696 TTCCCTACACTGGCTGCAGAAGTATTCTGAGATTTAG
1 TTCCCTACACTGGCTGCAGAAGTAGTCTGAGATTTAG
8846733 GACCCACATT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (39 bp):
TTCCCTACACTGGCTGCAGAAGTAGTCTGAGATTTAGTA
Found at i:8848304 original size:81 final size:82
Alignment explanation
Indices: 8848196--8848362 Score: 300
Period size: 81 Copynumber: 2.0 Consensus size: 82
8848186 CTCAATAAGG
*
8848196 AATCTGTATATATAAAGAAAAACTTCTAATTATTTTTTTAAAATTTATTATGAATTTTTAAAGTC
1 AATCTGTAAATATAAAGAAAAACTTCTAATTATTTTTTTAAAATTTATTATGAATTTTTAAAGTC
8848261 AGAACAGGGGATCCA-A
66 AGAACAGGGGATCCAGA
8848277 AATCTGTAAATATAAAGAAAAACTTCTAATTATTTTTTTAAAATTTATTATGAATTTTTAAAGTC
1 AATCTGTAAATATAAAGAAAAACTTCTAATTATTTTTTTAAAATTTATTATGAATTTTTAAAGTC
* *
8848342 ATAATAGGGGATCCAGA
66 AGAACAGGGGATCCAGA
8848359 AATC
1 AATC
8848363 ACTCTGGCCC
Statistics
Matches: 82, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
81 77 0.94
82 5 0.06
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.38
Consensus pattern (82 bp):
AATCTGTAAATATAAAGAAAAACTTCTAATTATTTTTTTAAAATTTATTATGAATTTTTAAAGTC
AGAACAGGGGATCCAGA
Found at i:8848966 original size:19 final size:20
Alignment explanation
Indices: 8848942--8848979 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
8848932 GGTACCACCA
8848942 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
8848961 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
8848980 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:8849324 original size:93 final size:93
Alignment explanation
Indices: 8849209--8849379 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
8849199 GCCCCTAAGT
*
8849209 GAACTCGGACTCAACTCAACGAGCTCA-AGCGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGA-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
* *
8849273 ATGATTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
8849302 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
8849367 CGAGTTCGGATGC
66 CGAGTTCGGATGC
8849380 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:8849367 original size:46 final size:47
Alignment explanation
Indices: 8849204--8849376 Score: 187
Period size: 46 Copynumber: 3.7 Consensus size: 47
8849194 AACCTGCCCC
* * *
8849204 TAAGTGAACTCGGACTCAACTCAACGAGCTC-AAGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
* * * *
8849250 TAAATGAACTCGGACTCAACTCAATGATTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCATCCA
* *
8849298 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
8849343 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
8849377 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 56 0.54
47 28 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
Found at i:8850076 original size:57 final size:57
Alignment explanation
Indices: 8849982--8850101 Score: 195
Period size: 57 Copynumber: 2.1 Consensus size: 57
8849972 TATTTTTGCC
* * *
8849982 AATTAAGCCCTTTTACTCGTTTGCACTCAAAATCGAGTAGCAAAAGTTGTCTAACAT
1 AATTTAGCCCTTTTACTCGTTTGCACTAAAAACCGAGTAGCAAAAGTTGTCTAACAT
* *
8850039 AATTTAGCCCTTTTACTCGTTTTCACTAAAAACCGAGTAGCACAAGTTGTCTAACAT
1 AATTTAGCCCTTTTACTCGTTTGCACTAAAAACCGAGTAGCAAAAGTTGTCTAACAT
8850096 AATTTA
1 AATTTA
8850102 AAACCCCATA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (57 bp):
AATTTAGCCCTTTTACTCGTTTGCACTAAAAACCGAGTAGCAAAAGTTGTCTAACAT
Found at i:8853520 original size:20 final size:19
Alignment explanation
Indices: 8853495--8853560 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 19
8853485 CCTTAACAAT
*
8853495 TATAAAAATAGAAATAAATA
1 TATAAAAATACAAA-AAATA
*
8853515 TATAAAAATTCAAAAAAATA
1 TATAAAAATAC-AAAAAATA
8853535 TATACAAAAT-CTAAAAAATA
1 TATA-AAAATAC-AAAAAATA
8853555 TATAAA
1 TATAAA
8853561 TTATAAACAT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
19 2 0.05
20 31 0.76
21 8 0.20
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.26
Consensus pattern (19 bp):
TATAAAAATACAAAAAATA
Found at i:8853543 original size:22 final size:20
Alignment explanation
Indices: 8853510--8853558 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
8853500 AAATAGAAAT
8853510 AAATATATA-AAAATTCAAAA
1 AAATATATACAAAA-TCAAAA
*
8853530 AAATATATACAAAATCTAAA
1 AAATATATACAAAATCAAAA
8853550 AAATATATA
1 AAATATATA
8853559 AATTATAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 23 0.85
21 4 0.15
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (20 bp):
AAATATATACAAAATCAAAA
Found at i:8853567 original size:18 final size:18
Alignment explanation
Indices: 8853514--8853579 Score: 53
Period size: 18 Copynumber: 3.6 Consensus size: 18
8853504 AGAAATAAAT
*
8853514 ATATAAAAATTCA-AAAAA
1 ATATATAAATT-ATAAAAA
* *
8853532 ATATATACAAAATCTAAAAA
1 ATATAT--AAATTATAAAAA
*
8853552 ATATATAAATTATAAACA
1 ATATATAAATTATAAAAA
*
8853570 TTATATAAAT
1 ATATATAAAT
8853580 GGAAATATTT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
18 23 0.61
20 15 0.39
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (18 bp):
ATATATAAATTATAAAAA
Found at i:8855678 original size:31 final size:31
Alignment explanation
Indices: 8855606--8855678 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
8855596 CAAACTGATA
*
8855606 ATTGAACTATTCGAAAGTTTTCATTTAAGTT
1 ATTGAACTATTCGAAAGTTTTCATTTAAGTC
* * *
8855637 ACTGAACTATTTGAAAGTTTTTATTTAAGTC
1 ATTGAACTATTCGAAAGTTTTCATTTAAGTC
*
8855668 ATTGAGCTATT
1 ATTGAACTATT
8855679 AAGGGTGTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.45
Consensus pattern (31 bp):
ATTGAACTATTCGAAAGTTTTCATTTAAGTC
Found at i:8856422 original size:49 final size:48
Alignment explanation
Indices: 8856350--8856446 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 48
8856340 ATATACAAAG
8856350 GAAAGAATGATAGATCCACGAAAACAAAACAAAGGCTTTCCTCTTTTTA
1 GAAAGAATGATAGATCCACGAAAACAAAACAAAGGC-TTCCTCTTTTTA
* *
8856399 GAAAGAGTGATAGATCCACGAAAACGAAACAAAGGCTTCCTCTTTTTA
1 GAAAGAATGATAGATCCACGAAAACAAAACAAAGGCTTCCTCTTTTTA
8856447 TTCTTTTGTC
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
48 12 0.26
49 34 0.74
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24
Consensus pattern (48 bp):
GAAAGAATGATAGATCCACGAAAACAAAACAAAGGCTTCCTCTTTTTA
Found at i:8860068 original size:19 final size:19
Alignment explanation
Indices: 8860044--8860083 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
8860034 TACTTGAAAC
8860044 TAAATATTTATACGTTAAT
1 TAAATATTTATACGTTAAT
8860063 TAAATATTTATACGTTAAT
1 TAAATATTTATACGTTAAT
8860082 TA
1 TA
8860084 CAGAAAAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (19 bp):
TAAATATTTATACGTTAAT
Found at i:8861757 original size:27 final size:28
Alignment explanation
Indices: 8861717--8861794 Score: 117
Period size: 27 Copynumber: 2.9 Consensus size: 28
8861707 GCATTTGATG
*
8861717 TATATAATTA-TAAAAATTTATTAAA-T
1 TATAAAATTATTAAAAATTTATTAAATT
8861743 TATAAAATTATTAAAAATTTA-TAAATT
1 TATAAAATTATTAAAAATTTATTAAATT
*
8861770 TATAAAATTATCAAAAATTTATTAA
1 TATAAAATTATTAAAAATTTATTAA
8861795 TATATATATT
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
26 13 0.28
27 31 0.66
28 3 0.06
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (28 bp):
TATAAAATTATTAAAAATTTATTAAATT
Found at i:8861766 original size:19 final size:18
Alignment explanation
Indices: 8861717--8861791 Score: 82
Period size: 18 Copynumber: 4.2 Consensus size: 18
8861707 GCATTTGATG
*
8861717 TATATAATTATAAAAATT
1 TATAAAATTATAAAAATT
* *
8861735 TATTAAATTATAAAATTAT
1 TATAAAATTATAAAAAT-T
*
8861754 TA-AAAATT-TATAAATT
1 TATAAAATTATAAAAATT
8861770 TATAAAATTATCAAAAATT
1 TATAAAATTAT-AAAAATT
8861789 TAT
1 TAT
8861792 TAATATATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
16 3 0.07
17 11 0.24
18 20 0.43
19 12 0.26
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (18 bp):
TATAAAATTATAAAAATT
Found at i:8861768 original size:8 final size:8
Alignment explanation
Indices: 8861730--8861821 Score: 51
Period size: 8 Copynumber: 10.6 Consensus size: 8
8861720 ATAATTATAA
8861730 AAATTTATT
1 AAATTTA-T
8861739 AAA-TTAT
1 AAATTTAT
*
8861746 AAAATTATTAA
1 -AAA-T-TTAT
8861757 AAATTTAT
1 AAATTTAT
8861765 AAATTTAT
1 AAATTTAT
*
8861773 AAAATTATCAA
1 -AAATT-T-AT
8861784 AAATTTAT
1 AAATTTAT
* *
8861792 TAATATAT
1 AAATTTAT
* *
8861800 ATATTTTT
1 AAATTTAT
8861808 ATAATTTAT
1 A-AATTTAT
8861817 AAATT
1 AAATT
8861822 ATATCCTTTA
Statistics
Matches: 63, Mismatches: 12, Indels: 17
0.68 0.13 0.18
Matches are distributed among these distances:
7 1 0.02
8 33 0.52
9 16 0.25
10 9 0.14
11 4 0.06
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (8 bp):
AAATTTAT
Found at i:8862023 original size:16 final size:17
Alignment explanation
Indices: 8861986--8862027 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
8861976 TGTAGTCTTT
*
8861986 ATAAATTTATAATTTTC
1 ATAAATTTATAATTTAC
*
8862003 ATAAATTTTTAA-TTAC
1 ATAAATTTATAATTTAC
8862019 ATAAATTTA
1 ATAAATTTA
8862028 GATCCTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (17 bp):
ATAAATTTATAATTTAC
Found at i:8865526 original size:22 final size:22
Alignment explanation
Indices: 8865501--8865542 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8865491 TGTGAGTTTT
*
8865501 ATTTAAATTTATTATGATTTAG
1 ATTTAAATATATTATGATTTAG
* *
8865523 ATTTGAATATATTTTGATTT
1 ATTTAAATATATTATGATTT
8865543 TCAATTCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (22 bp):
ATTTAAATATATTATGATTTAG
Found at i:8865746 original size:6 final size:6
Alignment explanation
Indices: 8865737--8865765 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
8865727 AACTATTAAA
8865737 AATATT AATATT AATATT AATATT AATAT
1 AATATT AATATT AATATT AATATT AATAT
8865766 ATTTTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
AATATT
Found at i:8870259 original size:27 final size:27
Alignment explanation
Indices: 8870217--8870306 Score: 135
Period size: 27 Copynumber: 3.3 Consensus size: 27
8870207 CCTTCTTGAC
* *
8870217 AGGCGACACTGATTGAGGACACGCCAG
1 AGGCGGCACTGGTTGAGGACACGCCAG
* *
8870244 AGGCGGTACTGGTTGAGGGCACGCCAG
1 AGGCGGCACTGGTTGAGGACACGCCAG
*
8870271 AGGCGGCACTGGTTGAGGTCACGCCAG
1 AGGCGGCACTGGTTGAGGACACGCCAG
8870298 AGGCGGCAC
1 AGGCGGCAC
8870307 CAGTGAAGCC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.22, C:0.26, G:0.40, T:0.12
Consensus pattern (27 bp):
AGGCGGCACTGGTTGAGGACACGCCAG
Found at i:8874328 original size:23 final size:23
Alignment explanation
Indices: 8874295--8874376 Score: 146
Period size: 23 Copynumber: 3.6 Consensus size: 23
8874285 TGTCCCCAAG
* *
8874295 CACACGAGCGTGTGTAATGCCTC
1 CACACGGGCGTGTGTAACGCCTC
8874318 CACACGGGCGTGTGTAACGCCTC
1 CACACGGGCGTGTGTAACGCCTC
8874341 CACACGGGCGTGTGTAACGCCTC
1 CACACGGGCGTGTGTAACGCCTC
8874364 CACACGGGCGTGT
1 CACACGGGCGTGT
8874377 AAGGCTTTAA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.18
Consensus pattern (23 bp):
CACACGGGCGTGTGTAACGCCTC
Found at i:8876901 original size:26 final size:25
Alignment explanation
Indices: 8876853--8876918 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 25
8876843 GACTAGCAGT
*
8876853 TTAAAAATATATAATCCAAAGCCCAA
1 TTAAAAAT-TAAAATCCAAAGCCCAA
* **
8876879 TTAAAAATTAAAATCGAATAGCCTTA
1 TTAAAAATTAAAATCCAA-AGCCCAA
8876905 TTACAAAATTAAAA
1 TTA-AAAATTAAAA
8876919 ACCCAAAAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 8 0.24
26 16 0.47
27 10 0.29
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.27
Consensus pattern (25 bp):
TTAAAAATTAAAATCCAAAGCCCAA
Found at i:8878764 original size:64 final size:63
Alignment explanation
Indices: 8878683--8878865 Score: 167
Period size: 67 Copynumber: 2.8 Consensus size: 63
8878673 AGACATTATG
*
8878683 ATGTAGCTAGGTCGCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACG-GTATAT
1 ATGTAGCTAGGTCGCATGG-TGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAG-ATAA
* * * * *
8878747 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATG-GT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
8878812 AA
62 AA
* * * *
8878814 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAG
1 A-TGTAGCTAGGTCGCAT-GGTGATACTATGTGTACACCATGTAG-ACAAGAGAG
8878866 GCGAACTATA
Statistics
Matches: 97, Mismatches: 14, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 20 0.21
65 9 0.09
66 15 0.15
67 31 0.32
68 3 0.03
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:8881229 original size:46 final size:46
Alignment explanation
Indices: 8881179--8881354 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
8881169 TGGTTGAGCA
8881179 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
8881225 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
8881270 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACCTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
8881318 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8881355 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 28 0.26
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:8881335 original size:93 final size:93
Alignment explanation
Indices: 8881176--8881347 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
8881166 GGATGGTTGA
* * *
8881176 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
8881241 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
8881269 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACCTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
*
8881334 TGAGTTCGAGTTCG
66 TGAGTCCGAGTTCG
8881348 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:8882590 original size:56 final size:56
Alignment explanation
Indices: 8882509--8882621 Score: 217
Period size: 56 Copynumber: 2.0 Consensus size: 56
8882499 TTTTAACTCG
*
8882509 AGATTTGAATTTTTAAGCGACTGTGATGCAGATTGCTAGCTTGACTGAAAATTTTA
1 AGATATGAATTTTTAAGCGACTGTGATGCAGATTGCTAGCTTGACTGAAAATTTTA
8882565 AGATATGAATTTTTAAGCGACTGTGATGCAGATTGCTAGCTTGACTGAAAATTTTA
1 AGATATGAATTTTTAAGCGACTGTGATGCAGATTGCTAGCTTGACTGAAAATTTTA
8882621 A
1 A
8882622 AAATAAATTG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (56 bp):
AGATATGAATTTTTAAGCGACTGTGATGCAGATTGCTAGCTTGACTGAAAATTTTA
Found at i:8884364 original size:15 final size:15
Alignment explanation
Indices: 8884342--8884421 Score: 76
Period size: 15 Copynumber: 5.4 Consensus size: 15
8884332 GTATCTTGGG
*
8884342 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
8884357 TCTT-TTTATTCTGGA
1 T-TTCTTTATTCTGGA
*
8884372 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
8884387 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
* *
8884402 TTTCTATATTC-GGT
1 TTTCTTTATTCTGGA
8884416 TTTCTT
1 TTTCTT
8884422 ATTATCTTTG
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
14 11 0.20
15 39 0.72
16 4 0.07
ACGTcount: A:0.11, C:0.16, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:8884402 original size:30 final size:30
Alignment explanation
Indices: 8884333--8884420 Score: 83
Period size: 30 Copynumber: 3.0 Consensus size: 30
8884323 CATAATATCG
* * *
8884333 TATCTTGGGTTTCTTTATCCTGGATCTT-TT
1 TATCTTGGATTTCTTTATTCTGGAT-TTCTC
*
8884363 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
* *
8884393 TATCTTGGATTTCTATATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
8884421 TATTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 10 0.20
30 38 0.78
31 1 0.02
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:8890919 original size:60 final size:60
Alignment explanation
Indices: 8890813--8890927 Score: 142
Period size: 60 Copynumber: 1.9 Consensus size: 60
8890803 GATTATATTA
* * * *
8890813 ATATTAAATTTAATTTAATGTTTATCTACAAGATAAACATTCTATTATTTTAATAAGATTTC
1 ATATTAAATTTAATATAATATTTATCT--AAGATAAACATTATATTAATTTAATAAGATTTC
* *
8890875 ATATTAAATTATAATATAATATTTATCT-TGATAAATATTATATTAATTTAATA
1 ATATTAAATT-TAATATAATATTTATCTAAGATAAACATTATATTAATTTAATA
8890928 TTAAAATGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
60 21 0.46
62 10 0.22
63 15 0.33
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.48
Consensus pattern (60 bp):
ATATTAAATTTAATATAATATTTATCTAAGATAAACATTATATTAATTTAATAAGATTTC
Found at i:8891801 original size:16 final size:16
Alignment explanation
Indices: 8891780--8891825 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
8891770 TATAATTGTT
8891780 TATAATATTTATATTA
1 TATAATATTTATATTA
8891796 TATAAT-TTTATAATTA
1 TATAATATTTAT-ATTA
*
8891812 TGAT-ATATATATAT
1 T-ATAATATTTATAT
8891826 GAGATGATCC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 5 0.19
16 15 0.58
17 6 0.23
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (16 bp):
TATAATATTTATATTA
Found at i:8895715 original size:22 final size:22
Alignment explanation
Indices: 8895690--8895763 Score: 57
Period size: 22 Copynumber: 3.4 Consensus size: 22
8895680 TCATGAATAT
8895690 TCATACTTTAATCATTGGCACA
1 TCATACTTTAATCATTGGCACA
** * *
8895712 TCATA-TCTT--TCCCT-GAATA
1 TCATACT-TTAATCATTGGCACA
8895731 CTCATACTTTAATCATTGGCACA
1 -TCATACTTTAATCATTGGCACA
8895754 TCATTACTTT
1 TCA-TACTTT
8895764 CCCTATTTGT
Statistics
Matches: 37, Mismatches: 8, Indels: 13
0.64 0.14 0.22
Matches are distributed among these distances:
19 3 0.08
20 10 0.27
21 2 0.05
22 13 0.35
23 9 0.24
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (22 bp):
TCATACTTTAATCATTGGCACA
Found at i:8895730 original size:42 final size:42
Alignment explanation
Indices: 8895683--8895767 Score: 145
Period size: 42 Copynumber: 2.0 Consensus size: 42
8895673 TTCATATTCA
*
8895683 TGAATATTCATACTTTAATCATTGGCACATCA-TATCTTTCCC
1 TGAATACTCATACTTTAATCATTGGCACATCATTA-CTTTCCC
8895725 TGAATACTCATACTTTAATCATTGGCACATCATTACTTTCCC
1 TGAATACTCATACTTTAATCATTGGCACATCATTACTTTCCC
8895767 T
1 T
8895768 ATTTGTCGTA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
42 39 0.95
43 2 0.05
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (42 bp):
TGAATACTCATACTTTAATCATTGGCACATCATTACTTTCCC
Found at i:8896080 original size:101 final size:101
Alignment explanation
Indices: 8895968--8896159 Score: 321
Period size: 101 Copynumber: 1.9 Consensus size: 101
8895958 CTTACATTCG
*
8895968 TAGTGCCATAACCCAGTTACGGTCTTATCATCAGAACACCATAGCCCAGCTATGGTCTTATATAT
1 TAGTGCCATAACCCAGTTACGGTCTTATCATCAGAACACCATAGCCCAGCTATGGTCTTACATAT
* *
8896033 AAACACTGCCATGGTCCAACCATGGTCTTATGTCCA
66 AAACACTACCATAGTCCAACCATGGTCTTATGTCCA
* ***
8896069 TAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGTCATAGCCCAGCTATGGTCTTACATAT
1 TAGTGCCATAACCCAGTTACGGTCTTATCATCAGAACACCATAGCCCAGCTATGGTCTTACATAT
8896134 AAACACTACCATAGTCCAACCATGGT
66 AAACACTACCATAGTCCAACCATGGT
8896160 TTTACGTGTT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 84 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (101 bp):
TAGTGCCATAACCCAGTTACGGTCTTATCATCAGAACACCATAGCCCAGCTATGGTCTTACATAT
AAACACTACCATAGTCCAACCATGGTCTTATGTCCA
Found at i:8902995 original size:29 final size:29
Alignment explanation
Indices: 8902963--8903021 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
8902953 TTTTAATAGT
* *
8902963 TTAATATTAGATTTTATTTAATACTTATC
1 TTAATATTAAATTTAATTTAATACTTATC
*
8902992 TTAATATTAAATTTAATTTAATATTTATC
1 TTAATATTAAATTTAATTTAATACTTATC
8903021 T
1 T
8903022 ATAAGATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (29 bp):
TTAATATTAAATTTAATTTAATACTTATC
Found at i:8903031 original size:29 final size:29
Alignment explanation
Indices: 8902963--8903028 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
8902953 TTTTAATAGT
* * *
8902963 TTAATATTAGATTTTATTTAATACTTATC
1 TTAAGATTAAATTTAATTTAATACTTATC
* *
8902992 TTAATATTAAATTTAATTTAATATTTATC
1 TTAAGATTAAATTTAATTTAATACTTATC
8903021 TATAAGAT
1 T-TAAGAT
8903029 AAACATTCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 27 0.84
30 5 0.16
ACGTcount: A:0.39, C:0.05, G:0.03, T:0.53
Consensus pattern (29 bp):
TTAAGATTAAATTTAATTTAATACTTATC
Found at i:8903076 original size:18 final size:19
Alignment explanation
Indices: 8903055--8903093 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
8903045 TAATAAGATA
8903055 TAATATTAA-ATTTAA-ATT
1 TAATA-TAATATTTAATATT
8903073 TAATATAATATTTAATATT
1 TAATATAATATTTAATATT
8903092 TA
1 TA
8903094 TCTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.16
18 11 0.58
19 5 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATATAATATTTAATATT
Found at i:8903085 original size:12 final size:12
Alignment explanation
Indices: 8903052--8903090 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
8903042 TTTTAATAAG
*
8903052 ATATAATATTAA
1 ATATAATATTTA
*
8903064 ATTTAA-ATTTA
1 ATATAATATTTA
8903075 ATATAATATTTA
1 ATATAATATTTA
8903087 ATAT
1 ATAT
8903091 TTATCTTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
ATATAATATTTA
Found at i:8911629 original size:27 final size:26
Alignment explanation
Indices: 8911544--8911629 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 26
8911534 AAACACACTA
*
8911544 GCGAACACCGACTTGCC-AATAGACTA
1 GCGAACACC-ACTTGCCAAATAGACTG
* * * *
8911570 GCGAACACTAGCTTGCCAAACATAGTG
1 GCGAACACCA-CTTGCCAAATAGACTG
8911597 GCGAACACCACCTTGCCAAATAGACTG
1 GCGAACACCA-CTTGCCAAATAGACTG
*
8911624 GTGAAC
1 GCGAAC
8911630 CCCATTACTG
Statistics
Matches: 47, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
25 1 0.02
26 14 0.30
27 32 0.68
ACGTcount: A:0.34, C:0.29, G:0.21, T:0.16
Consensus pattern (26 bp):
GCGAACACCACTTGCCAAATAGACTG
Found at i:8916357 original size:42 final size:42
Alignment explanation
Indices: 8916298--8916382 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
8916288 TCGCTAAACC
*
8916298 CAATATGGCTGAGTCATTGCCGGTTGGGGGATTTCCGGCATT
1 CAATATGGCTGAGTCATTGCCGGTTAGGGGATTTCCGGCATT
8916340 CAATATGGCTGAGTCATTGCCGGTTAGGGGATTTCCGGCATT
1 CAATATGGCTGAGTCATTGCCGGTTAGGGGATTTCCGGCATT
8916382 C
1 C
8916383 CTTTCTTCGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.18, C:0.20, G:0.32, T:0.31
Consensus pattern (42 bp):
CAATATGGCTGAGTCATTGCCGGTTAGGGGATTTCCGGCATT
Found at i:8921079 original size:42 final size:42
Alignment explanation
Indices: 8921032--8921143 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 42
8921022 TTCCACTTTA
*
8921032 CTTCCTTTTTTGTCTAAACCTGGA-GATTGCTTTCCCAATTTG
1 CTTCCTTTTTTGTCTAAACATGGATG-TTGCTTTCCCAATTTG
* *
8921074 CTTCCTTTTTTGTCTAAACATGGATGTTGTTTTCCCAAGTTG
1 CTTCCTTTTTTGTCTAAACATGGATGTTGCTTTCCCAATTTG
*
8921116 --T--TTTTTT-T-TAGACATGGATGTTGCTTTC
1 CTTCCTTTTTTGTCTAAACATGGATGTTGCTTTC
8921144 TCACGTTACT
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
36 18 0.28
37 1 0.02
38 6 0.09
40 1 0.02
42 37 0.58
43 1 0.02
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49
Consensus pattern (42 bp):
CTTCCTTTTTTGTCTAAACATGGATGTTGCTTTCCCAATTTG
Found at i:8921782 original size:24 final size:23
Alignment explanation
Indices: 8921737--8921780 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
8921727 AATAACATAG
*
8921737 TTTTAATAAATGCAAAAAAAATA
1 TTTTAATAAATGAAAAAAAAATA
8921760 TTTTAATAAATGAAAAAAAAA
1 TTTTAATAAATGAAAAAAAAA
8921781 ATTGAACTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.30
Consensus pattern (23 bp):
TTTTAATAAATGAAAAAAAAATA
Found at i:8925978 original size:11 final size:11
Alignment explanation
Indices: 8925962--8925987 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8925952 TGGAAAAAGG
8925962 ATAAAAGAAAA
1 ATAAAAGAAAA
8925973 ATAAAAGAAAA
1 ATAAAAGAAAA
8925984 ATAA
1 ATAA
8925988 TTAAACAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.12
Consensus pattern (11 bp):
ATAAAAGAAAA
Found at i:8926006 original size:22 final size:22
Alignment explanation
Indices: 8925972--8926015 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
8925962 ATAAAAGAAA
8925972 AATAAAAGAAAAATAAT-TAAAC
1 AATAAAAGAAAAA-AATCTAAAC
8925994 AATAAAA-ACAAAAAATCTAAAC
1 AATAAAAGA-AAAAAATCTAAAC
8926016 CTACCCGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.73, C:0.09, G:0.02, T:0.16
Consensus pattern (22 bp):
AATAAAAGAAAAAAATCTAAAC
Found at i:8926285 original size:18 final size:18
Alignment explanation
Indices: 8926259--8926293 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8926249 TAAATGCATT
*
8926259 TATTTATTAAATAAAATA
1 TATTAATTAAATAAAATA
*
8926277 TATTAATTAAATTAAAT
1 TATTAATTAAATAAAAT
8926294 GTATATTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TATTAATTAAATAAAATA
Found at i:8926484 original size:17 final size:17
Alignment explanation
Indices: 8926462--8926520 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
8926452 GTTCGGTAGA
8926462 ATGGAAAAAATAGAAAG
1 ATGGAAAAAATAGAAAG
*
8926479 ATGG--AAAATTG-AAG
1 ATGGAAAAAATAGAAAG
8926493 A-GGTAGAAAAATAGAAAG
1 ATGG-A-AAAAATAGAAAG
*
8926511 ATAGAAAAAA
1 ATGGAAAAAA
8926521 AAATATTTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
13 2 0.06
14 4 0.12
15 6 0.18
17 15 0.45
18 5 0.15
19 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.24, T:0.14
Consensus pattern (17 bp):
ATGGAAAAAATAGAAAG
Found at i:8926515 original size:16 final size:16
Alignment explanation
Indices: 8926467--8926519 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
8926457 GTAGAATGGA
8926467 AAAAATAGAAAGAT-G
1 AAAAATAGAAAGATAG
* * *
8926482 GAAAATTGAAGAGGTAG
1 AAAAATAGAA-AGATAG
8926499 AAAAATAGAAAGATAG
1 AAAAATAGAAAGATAG
8926515 AAAAA
1 AAAAA
8926520 AAAATATTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
15 8 0.27
16 13 0.43
17 9 0.30
ACGTcount: A:0.64, C:0.00, G:0.23, T:0.13
Consensus pattern (16 bp):
AAAAATAGAAAGATAG
Found at i:8931224 original size:166 final size:166
Alignment explanation
Indices: 8930949--8931281 Score: 639
Period size: 166 Copynumber: 2.0 Consensus size: 166
8930939 ATTATTGCAA
* *
8930949 ATTCACTCTTTCACACTTTCTTTGTATTAACCTCACTTTTAGCATACATATCACAATTCATTTTT
1 ATTCACTCTTTCACACTTTCTTTGTATTAACCTCACTTTTAGCATACATATCACAATTCAGTTTC
8931014 ACCACATTTCATACATCACAAGTATAAGTCCATGATTACAATGCCACCGTAAAATTATCCCGTTG
66 ACCACATTTCATACATCACAAGTATAAGTCCATGATTACAATGCCACCGTAAAATTATCCCGTTG
8931079 AACAATTCGGATCAATCCTCGATACTTGATGGTTTC
131 AACAATTCGGATCAATCCTCGATACTTGATGGTTTC
8931115 ATTCACTCTTTCACACTTTCTTTGTATTAACCTCACTTTTAGCATACATATCACAATTCAGTTTC
1 ATTCACTCTTTCACACTTTCTTTGTATTAACCTCACTTTTAGCATACATATCACAATTCAGTTTC
*
8931180 ACCACATTTCATACATCACAAGTATAAGTCCATGATTTCAATGCCACCGTAAAATTATCCCGTTG
66 ACCACATTTCATACATCACAAGTATAAGTCCATGATTACAATGCCACCGTAAAATTATCCCGTTG
8931245 AACAATTCGGATCAATCCTCGATACTTGATGGTTTC
131 AACAATTCGGATCAATCCTCGATACTTGATGGTTTC
8931281 A
1 A
8931282 GCACACTGCC
Statistics
Matches: 164, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
166 164 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.36
Consensus pattern (166 bp):
ATTCACTCTTTCACACTTTCTTTGTATTAACCTCACTTTTAGCATACATATCACAATTCAGTTTC
ACCACATTTCATACATCACAAGTATAAGTCCATGATTACAATGCCACCGTAAAATTATCCCGTTG
AACAATTCGGATCAATCCTCGATACTTGATGGTTTC
Found at i:8931521 original size:68 final size:68
Alignment explanation
Indices: 8931371--8931528 Score: 169
Period size: 68 Copynumber: 2.3 Consensus size: 68
8931361 CTAGCCAATT
* * *
8931371 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
8931436 TTTA
65 CATA
* * *
8931440 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
8931502 CTACATA
63 C-ACATA
8931509 GTATCTCGTAGCTCTCTTGT
1 -TATCTCGTAGCTCTCTTGT
8931529 ACACGTGATG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
68 36 0.48
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:8940733 original size:65 final size:66
Alignment explanation
Indices: 8940609--8940739 Score: 176
Period size: 65 Copynumber: 2.0 Consensus size: 66
8940599 TTATTTAGTC
* * *
8940609 CTAGCTTTATTTAGTTAATTTTGCAATATTCCAATTTTGCCATTAATTTATCAATTTT-CCTGCT
1 CTAGCTTTATTAAGTAAATTTTGCAATATTCCAATTTTACCATTAATTTATCAATTTTCCCTGCT
8940673 G
66 G
* ** *
8940674 CTAGCTTTATTAAGTAAATTTTGCAATTTTTTAATTTTACCCTATAATTTATCAA-TTTCCCTGC
1 CTAGCTTTATTAAGTAAATTTTGCAATATTCCAATTTTACCAT-TAATTTATCAATTTTCCCTGC
8940738 TG
65 TG
8940740 ATTTAATGCC
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
65 39 0.68
66 18 0.32
ACGTcount: A:0.26, C:0.17, G:0.08, T:0.49
Consensus pattern (66 bp):
CTAGCTTTATTAAGTAAATTTTGCAATATTCCAATTTTACCATTAATTTATCAATTTTCCCTGCT
G
Found at i:8941086 original size:25 final size:27
Alignment explanation
Indices: 8941052--8941103 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 27
8941042 AATCGGTAAA
*
8941052 ATTTTTCTATCA-AT-ATTTTCATACG
1 ATTTTCCTATCATATAATTTTCATACG
8941077 ATTTTCCTATCATATCAATTTTCATAC
1 ATTTTCCTATCATAT-AATTTTCATAC
8941104 AAAAATATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 11 0.48
26 2 0.09
28 10 0.43
ACGTcount: A:0.29, C:0.19, G:0.02, T:0.50
Consensus pattern (27 bp):
ATTTTCCTATCATATAATTTTCATACG
Found at i:8951807 original size:21 final size:21
Alignment explanation
Indices: 8951783--8951825 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
8951773 TCGGGCCGGG
8951783 TATAGGATATTAAAGTGACTA
1 TATAGGATATTAAAGTGACTA
8951804 TATAGGATATTAAAGTGACTA
1 TATAGGATATTAAAGTGACTA
8951825 T
1 T
8951826 CGCCTTTTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.05, G:0.19, T:0.35
Consensus pattern (21 bp):
TATAGGATATTAAAGTGACTA
Found at i:8957776 original size:25 final size:25
Alignment explanation
Indices: 8957748--8957888 Score: 228
Period size: 25 Copynumber: 5.6 Consensus size: 25
8957738 CATATATATT
* *
8957748 CGCACACATAGTGCCATAAAATTTC
1 CGCACACTTAGTGCCATACAATTTC
8957773 CGCACACTTAGTGCCATACAATTTC
1 CGCACACTTAGTGCCATACAATTTC
*
8957798 CACACACTTAGTGCCATACAATTTC
1 CGCACACTTAGTGCCATACAATTTC
* *
8957823 CGCACAGTTAGTGCCATATAATTTC
1 CGCACACTTAGTGCCATACAATTTC
*
8957848 CGCACACTTAGTGCCATATAATTTC
1 CGCACACTTAGTGCCATACAATTTC
8957873 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
8957889 AGTCATTTCG
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 109 1.00
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.28
Consensus pattern (25 bp):
CGCACACTTAGTGCCATACAATTTC
Found at i:8963365 original size:46 final size:45
Alignment explanation
Indices: 8963311--8963486 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
8963301 TGGTTGAGCA
8963311 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
8963357 TCCTAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
8963404 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
8963450 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8963487 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:8963467 original size:93 final size:93
Alignment explanation
Indices: 8963308--8963478 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
8963298 GGATGGTTGA
* * *
8963308 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCTAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
8963373 TGAGTCTGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
8963401 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8963466 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
8963479 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:8966053 original size:51 final size:50
Alignment explanation
Indices: 8965977--8966077 Score: 166
Period size: 51 Copynumber: 2.0 Consensus size: 50
8965967 CTAGCAACCG
*
8965977 AAGTAGCTCGAGAGTCCGTTGATGGTCGTTTCTTAATAGAAATTCCTGCT
1 AAGTAGCTCGAGAGTCCGTTGATGGTCGTTCCTTAATAGAAATTCCTGCT
* *
8966027 NAAGTAGCTCGAGAGTCCGTTGATGGTTGTTCCTTAATAGAATTTCCTGCT
1 -AAGTAGCTCGAGAGTCCGTTGATGGTCGTTCCTTAATAGAAATTCCTGCT
8966078 GTCATCCTTG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (50 bp):
AAGTAGCTCGAGAGTCCGTTGATGGTCGTTCCTTAATAGAAATTCCTGCT
Found at i:8971856 original size:41 final size:40
Alignment explanation
Indices: 8971809--8971890 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 40
8971799 TGAGAAAGAA
* *
8971809 AACTTTCAATTGGTGTAAGTGGTATGAAAAAAGAAAGCTAT
1 AACTTTCAATTGGTGTAAATAGTATGAAAAAA-AAAGCTAT
8971850 AACTTTCAATTGGTGTAAATAGTATGAAAAAAAAAGCTAT
1 AACTTTCAATTGGTGTAAATAGTATGAAAAAAAAAGCTAT
8971890 A
1 A
8971891 CAATAATGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
40 9 0.23
41 30 0.77
ACGTcount: A:0.45, C:0.07, G:0.18, T:0.29
Consensus pattern (40 bp):
AACTTTCAATTGGTGTAAATAGTATGAAAAAAAAAGCTAT
Found at i:8976599 original size:37 final size:37
Alignment explanation
Indices: 8976549--8976636 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
8976539 TAGAGAATTG
* *
8976549 TTTTCTTAATATTATTTGAGATTGATCCAAAATGTTA
1 TTTTCTTAATATTATTTAAGATTGATCCAAAAGGTTA
* *
8976586 TTTTCTTAATATTATTTAAGATTGATTCAAAGGGTTA
1 TTTTCTTAATATTATTTAAGATTGATCCAAAAGGTTA
*
8976623 TTTTCTTGATATTA
1 TTTTCTTAATATTA
8976637 ATCTTGTTTG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.31, C:0.07, G:0.11, T:0.51
Consensus pattern (37 bp):
TTTTCTTAATATTATTTAAGATTGATCCAAAAGGTTA
Found at i:8997552 original size:116 final size:115
Alignment explanation
Indices: 8997348--8997577 Score: 417
Period size: 116 Copynumber: 2.0 Consensus size: 115
8997338 CCTTTCTTGA
8997348 TCCGAATTAAGCTTCCAAATAGCCGAAACTTAGAACTCTTTATCTTTTCTTTTTGTTCTTCAATT
1 TCCGAATTAAGCTTCCAAATAGCCGAAACTTAGAACTCTTTATCTTTTCTTTTTGTTCTTCAATT
* *
8997413 TTCGGCACAAACAAAGAATAAAATGCCTATTTTCAAGTTTTGTTATATCAG
66 TTCGGCACAAACAAAGAATAAAATGACTATTTTCAAG-TTTCTTATATCAG
8997464 TCCGAATTAAGCTTCCAAATAGCCGAAACTTAGAACTCTTTATCTTTTCTTTTTGTTCTTCAATT
1 TCCGAATTAAGCTTCCAAATAGCCGAAACTTAGAACTCTTTATCTTTTCTTTTTGTTCTTCAATT
8997529 TTCGGCACAAACAAA-ACATAAAATGACTATTTTCAAGTTTCTTATATCA
66 TTCGGCACAAACAAAGA-ATAAAATGACTATTTTCAAGTTTCTTATATCA
8997578 TATATTAATT
Statistics
Matches: 111, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
115 12 0.11
116 99 0.89
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.39
Consensus pattern (115 bp):
TCCGAATTAAGCTTCCAAATAGCCGAAACTTAGAACTCTTTATCTTTTCTTTTTGTTCTTCAATT
TTCGGCACAAACAAAGAATAAAATGACTATTTTCAAGTTTCTTATATCAG
Found at i:8998780 original size:6 final size:6
Alignment explanation
Indices: 8998766--8998796 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
8998756 AGTATTAACT
*
8998766 TTTTAA TTTTGA TTTTGA TTTTGA TTTTGA T
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA T
8998797 AATTTTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.00, G:0.13, T:0.68
Consensus pattern (6 bp):
TTTTGA
Found at i:9004050 original size:24 final size:24
Alignment explanation
Indices: 9004023--9004070 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
9004013 GTTCAGGAAC
*
9004023 AAGCTCGTATATTGGCTAGTTTAT
1 AAGCTCGTATATTGACTAGTTTAT
* * *
9004047 AAGCTTGTTTATTGACTCGTTTAT
1 AAGCTCGTATATTGACTAGTTTAT
9004071 TTATTAATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.23, C:0.12, G:0.19, T:0.46
Consensus pattern (24 bp):
AAGCTCGTATATTGACTAGTTTAT
Found at i:9007154 original size:25 final size:26
Alignment explanation
Indices: 9007092--9007160 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 26
9007082 AGTTTAAGCA
*
9007092 AGCCA-ATATCAGGAAGCT-CTAGAG
1 AGCCATATATCAGGAAGCTCCGAGAG
* *
9007116 AGCC-TTTAAACAGGAAGCTCCGA-AG
1 AGCCATAT-ATCAGGAAGCTCCGAGAG
9007141 AGCCATATATCAGGAAGCTC
1 AGCCATATATCAGGAAGCTC
9007161 ATAGGAGCTG
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
24 5 0.14
25 27 0.75
26 4 0.11
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
AGCCATATATCAGGAAGCTCCGAGAG
Found at i:9007168 original size:25 final size:24
Alignment explanation
Indices: 9007092--9007168 Score: 68
Period size: 25 Copynumber: 3.1 Consensus size: 24
9007082 AGTTTAAGCA
9007092 AGCCA-ATATCAGGAAGCTCTAGAG
1 AGCCATATATCAGGAAGCTCTAG-G
* * * *
9007116 AGCC-TTTAAACAGGAAGCTCCGAAG
1 AGCCATAT-ATCAGGAAGCT-CTAGG
9007141 AGCCATATATCAGGAAGCTCATAGG
1 AGCCATATATCAGGAAGCTC-TAGG
9007166 AGC
1 AGC
9007169 TGCAGTGTGT
Statistics
Matches: 40, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
24 6 0.15
25 30 0.75
26 4 0.10
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (24 bp):
AGCCATATATCAGGAAGCTCTAGG
Found at i:9010949 original size:13 final size:13
Alignment explanation
Indices: 9010931--9010956 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9010921 TAATATTAGT
9010931 TTAATAATAATAA
1 TTAATAATAATAA
9010944 TTAATAATAATAA
1 TTAATAATAATAA
9010957 ACAAAACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TTAATAATAATAA
Found at i:9012391 original size:42 final size:42
Alignment explanation
Indices: 9012342--9012495 Score: 227
Period size: 42 Copynumber: 3.6 Consensus size: 42
9012332 TGAGATTACG
***
9012342 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCTTG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
* *
9012384 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATCCCA
* *
9012427 TGTAAGACCATATTTGGGATATGACATCGATATGAGATCCCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
*
9012469 TATAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
9012496 TGGTATGGTA
Statistics
Matches: 99, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
42 63 0.64
43 36 0.36
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCCA
Found at i:9013313 original size:10 final size:10
Alignment explanation
Indices: 9013300--9013339 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
9013290 TTCATGTTAT
9013300 TTTAAAAAAA
1 TTTAAAAAAA
9013310 TTTAAAAAAA
1 TTTAAAAAAA
**
9013320 CTCAAAAAAAA
1 -TTTAAAAAAA
9013331 TTTAAAAAA
1 TTTAAAAAA
9013340 GGGTTTACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (10 bp):
TTTAAAAAAA
Found at i:9013683 original size:13 final size:15
Alignment explanation
Indices: 9013665--9013696 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
9013655 GGGTAATTCG
9013665 ACACGACC-TGT-GC
1 ACACGACCGTGTGGC
9013678 ACACGACCGTGTGGC
1 ACACGACCGTGTGGC
9013693 ACAC
1 ACAC
9013697 ATAACCTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 3 0.18
15 6 0.35
ACGTcount: A:0.25, C:0.38, G:0.25, T:0.12
Consensus pattern (15 bp):
ACACGACCGTGTGGC
Found at i:9013787 original size:6 final size:6
Alignment explanation
Indices: 9013776--9013855 Score: 56
Period size: 6 Copynumber: 12.0 Consensus size: 6
9013766 CCAAAGCCTC
9013776 ATTTTT ATTTTT ATTTATT -TTTTT ATTTTCT ATATTCATAT ATTTTT
1 ATTTTT ATTTTT ATTT-TT ATTTTT ATTTT-T AT-TT--T-T ATTTTT
9013823 ATTTTT ATTTACTTT ATTTATT -TTTTT ATTTTT
1 ATTTTT A-TT--TTT ATTT-TT ATTTTT ATTTTT
9013856 TGGATTTATA
Statistics
Matches: 62, Mismatches: 1, Indels: 22
0.73 0.01 0.26
Matches are distributed among these distances:
5 4 0.06
6 34 0.55
7 10 0.16
8 4 0.06
9 6 0.10
10 4 0.06
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (6 bp):
ATTTTT
Found at i:9013802 original size:8 final size:8
Alignment explanation
Indices: 9013777--9013856 Score: 54
Period size: 8 Copynumber: 9.5 Consensus size: 8
9013767 CAAAGCCTCA
9013777 TTTTTATTT
1 TTTTTA-TT
9013786 TTATTTATT
1 TT-TTTATT
9013795 TTTTTATT
1 TTTTTATT
*
9013803 TTCTATATT
1 TT-TTTATT
** *
9013812 CATATATT
1 TTTTTATT
9013820 TTTATT-TT
1 TTT-TTATT
*
9013828 TATTTACTT
1 TTTTTA-TT
*
9013837 TATTTATT
1 TTTTTATT
9013845 TTTTTATT
1 TTTTTATT
9013853 TTTT
1 TTTT
9013857 GGATTTATAT
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
7 2 0.03
8 32 0.55
9 20 0.34
10 4 0.07
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTATT
Found at i:9013827 original size:29 final size:27
Alignment explanation
Indices: 9013781--9013855 Score: 80
Period size: 29 Copynumber: 2.7 Consensus size: 27
9013771 GCCTCATTTT
* *
9013781 TATTTTTATTTATT-TTTTTATTTTCTA
1 TATTTATATTT-TTATTTTTATTTACTA
*
9013808 TATTCATATATTTTTATTTTTATTTACTT
1 TATT--TATATTTTTATTTTTATTTACTA
*
9013837 TATTTATTTTTTTATTTTT
1 TATTTATATTTTTATTTTT
9013856 TGGATTTATA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 18 0.44
28 2 0.05
29 21 0.51
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (27 bp):
TATTTATATTTTTATTTTTATTTACTA
Found at i:9013864 original size:25 final size:23
Alignment explanation
Indices: 9013776--9013856 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 23
9013766 CCAAAGCCTC
*
9013776 ATTTTTATTTTTATTTATTTTTTT
1 ATTTTT-TATTTATTTATTTTTTT
* *
9013800 ATTTTCTATATTCATATATTTTTATT
1 ATTTT-T-TATTTATTTATTTTT-TT
9013826 -TTTATTTACTTTATTTATTTTTTT
1 ATTT-TTTA-TTTATTTATTTTTTT
9013850 ATTTTTT
1 ATTTTTT
9013857 GGATTTATAT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
24 12 0.26
25 32 0.68
26 3 0.06
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.77
Consensus pattern (23 bp):
ATTTTTTATTTATTTATTTTTTT
Found at i:9034182 original size:138 final size:138
Alignment explanation
Indices: 9033934--9034213 Score: 515
Period size: 138 Copynumber: 2.0 Consensus size: 138
9033924 ATGCTTCTTT
* *
9033934 TGAACAAGGGGCTAATGTTGATGCCCTCATGAAAGATGGCAACAATGCGTTACACCTCACGGTTG
1 TGAACAAGGGGCTAATGTTGATGCCCTCACGAAAGATGGCAACAATGCGTTACACCTCACAGTTG
*
9033999 AGAATAGAAACGGAGTTTACACACATTTGTTGTTAGCTAACAGTGTCGTTCTCGGTGTTCGAAAT
66 AGAATAGAAACGGAGTTTACACACATTTGTTATTAGCTAACAGTGTCGTTCTCGGTGTTCGAAAT
9034064 ACTCAAGA
131 ACTCAAGA
*
9034072 TGAACAAGTGGCTAATGTTGATGCCCTCACGAAAGATGGCAACAATGCGTTACACCTCACAGTTG
1 TGAACAAGGGGCTAATGTTGATGCCCTCACGAAAGATGGCAACAATGCGTTACACCTCACAGTTG
*
9034137 AGAATAGAAACGGAGTTTACACACATTTGTTATTAGCTAACAGTGTTGTTCTCGGTGTTCGAAAT
66 AGAATAGAAACGGAGTTTACACACATTTGTTATTAGCTAACAGTGTCGTTCTCGGTGTTCGAAAT
9034202 ACTCAAGA
131 ACTCAAGA
9034210 TGAA
1 TGAA
9034214 GATTTCTTAC
Statistics
Matches: 137, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 137 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (138 bp):
TGAACAAGGGGCTAATGTTGATGCCCTCACGAAAGATGGCAACAATGCGTTACACCTCACAGTTG
AGAATAGAAACGGAGTTTACACACATTTGTTATTAGCTAACAGTGTCGTTCTCGGTGTTCGAAAT
ACTCAAGA
Found at i:9042251 original size:27 final size:27
Alignment explanation
Indices: 9042167--9042271 Score: 86
Period size: 27 Copynumber: 3.9 Consensus size: 27
9042157 ATGGTGTACT
* * * *
9042167 CTAAAAGGAATTCCTTTGCGGCATATT
1 CTAAAAGGAATGCCTTTGTGGCGTATC
* * * *
9042194 CTGAAAGGAATGTCTTTGTAGTGTA-C
1 CTAAAAGGAATGCCTTTGTGGCGTATC
9042220 TCTAAAAGGAATGCCTTTGTGGCGTATC
1 -CTAAAAGGAATGCCTTTGTGGCGTATC
* * * *
9042248 CTAAATGGATTGCTTTTATGGCGT
1 CTAAAAGGAATGCCTTTGTGGCGT
9042272 GTCTTGTATG
Statistics
Matches: 60, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (27 bp):
CTAAAAGGAATGCCTTTGTGGCGTATC
Found at i:9055167 original size:40 final size:40
Alignment explanation
Indices: 9055118--9055321 Score: 166
Period size: 40 Copynumber: 5.1 Consensus size: 40
9055108 CGGAATTTAA
** * *
9055118 CCGGATATAGCT-ACTCGTTCAAATGCTTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAAC
* *
9055158 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* * * * *
9055198 CCGGATTTAGTACCTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* **
9055237 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CATAAC
* * * * *
9055277 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACATAAC
9055317 CCGGA
1 CCGGA
9055322 CATCATTCGA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 92 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
Found at i:9055237 original size:79 final size:80
Alignment explanation
Indices: 9055139--9055321 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
9055129 TACTCGTTCA
* * *
9055139 AATGCTTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
9055202 ATTTAGT-ACCTCGCACC
64 ATATAGTCACCTAGCA-C
**
9055219 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
9055283 ATGGTCACTTAGCAC
66 ATAGTCACCTAGCAC
*
9055298 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
9055322 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.64
80 29 0.33
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTCACCTAGCAC
Found at i:9057068 original size:48 final size:48
Alignment explanation
Indices: 9056997--9057093 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
9056987 GACTCGGTTT
* *
9056997 AGCGGTCCCGAAACCACTTCCCGACTAGGGTCAATTTTGGGTTGTCAC
1 AGCGGTCCCGAAACCACTTCCCGACTAGGGTCAACTTTGGGCTGTCAC
9057045 AGCGGTCCCGAAACCACTTCCCGACTAGGGTCAACTTTGGGCTGTCAC
1 AGCGGTCCCGAAACCACTTCCCGACTAGGGTCAACTTTGGGCTGTCAC
9057093 A
1 A
9057094 TGTACTCATT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.23
Consensus pattern (48 bp):
AGCGGTCCCGAAACCACTTCCCGACTAGGGTCAACTTTGGGCTGTCAC
Found at i:9058661 original size:58 final size:58
Alignment explanation
Indices: 9058557--9058668 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 58
9058547 AGTGATTCTT
* * **
9058557 TCTTGGTTAATATGACCAAGCCTCAAATGTTAAAGGTATGTGTTATTAGAGTGATAAG
1 TCTTGGTTAATATAACCAAGCCTCAAATGTTAAAGGTAAGCCTTATTAGAGTGATAAG
* *
9058615 TCTTGGTTAATATAACCAAGTCTCAAATGTTAAAGGTAAGCCTTATTCGAGTGA
1 TCTTGGTTAATATAACCAAGCCTCAAATGTTAAAGGTAAGCCTTATTAGAGTGA
9058669 GAACTTTTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.34
Consensus pattern (58 bp):
TCTTGGTTAATATAACCAAGCCTCAAATGTTAAAGGTAAGCCTTATTAGAGTGATAAG
Found at i:9060551 original size:16 final size:16
Alignment explanation
Indices: 9060519--9060551 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9060509 TGATAGATCT
9060519 TCGACGAGCTTCGAAA
1 TCGACGAGCTTCGAAA
9060535 TCGATCGAGCTTC-AAA
1 TCGA-CGAGCTTCGAAA
9060551 T
1 T
9060552 AATCTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (16 bp):
TCGACGAGCTTCGAAA
Found at i:9064118 original size:54 final size:53
Alignment explanation
Indices: 9064036--9064139 Score: 190
Period size: 54 Copynumber: 1.9 Consensus size: 53
9064026 AACGGGAGTT
*
9064036 AGAATCATACCATGCAAGGTAGAAGTAGAAATTGAATGCTCCCCCCTTTCAAAA
1 AGAATCATACCATGCAAGGTAGAAGTAGAAATTGAATGCT-CCACCTTTCAAAA
9064090 AGAATCATACCATGCAAGGTAGAAGTAGAAATTGAATGCTCCACCTTTCA
1 AGAATCATACCATGCAAGGTAGAAGTAGAAATTGAATGCTCCACCTTTCA
9064140 GAAATGGTGA
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 9 0.18
54 40 0.82
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.23
Consensus pattern (53 bp):
AGAATCATACCATGCAAGGTAGAAGTAGAAATTGAATGCTCCACCTTTCAAAA
Found at i:9067322 original size:22 final size:22
Alignment explanation
Indices: 9067294--9067338 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
9067284 ACACACGCAT
*
9067294 AGTCCATCATCTACTCAGGATA
1 AGTCCATCATCTACTCAAGATA
9067316 AGTCCATCATCTACTCAAGATA
1 AGTCCATCATCTACTCAAGATA
9067338 A
1 A
9067339 AGTTAAGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.27, G:0.11, T:0.27
Consensus pattern (22 bp):
AGTCCATCATCTACTCAAGATA
Found at i:9075288 original size:30 final size:30
Alignment explanation
Indices: 9075254--9075313 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
9075244 CAACCTTCTC
9075254 AACATCACAATTCTGAAAGGTTGACACTCT
1 AACATCACAATTCTGAAAGGTTGACACTCT
* *
9075284 AACATCGCAATTCTGAAAGGTTGACGCTCT
1 AACATCACAATTCTGAAAGGTTGACACTCT
9075314 TTCCCTGCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (30 bp):
AACATCACAATTCTGAAAGGTTGACACTCT
Found at i:9079103 original size:5 final size:5
Alignment explanation
Indices: 9079087--9079130 Score: 52
Period size: 5 Copynumber: 8.8 Consensus size: 5
9079077 TTGCATACCC
* * * *
9079087 ATCCA ATACA ATCCA ATCCA ATGCA ATGCA ATGCA ATCCA ATCC
1 ATCCA ATCCA ATCCA ATCCA ATCCA ATCCA ATCCA ATCCA ATCC
9079131 TCACGGTAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.41, C:0.32, G:0.07, T:0.20
Consensus pattern (5 bp):
ATCCA
Found at i:9083040 original size:35 final size:36
Alignment explanation
Indices: 9082994--9083070 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 36
9082984 ATCTGTAAAA
9082994 TGAGAAAACTAA-AGGG-GAAGCTAAAAAGCTCAGTG
1 TGAGAAAACTAAGAGGGTG-AGCTAAAAAGCTCAGTG
*
9083029 TGAGAAAACTAAGGAGGGTGAGCTAGAAAGCTCAGTG
1 TGAGAAAACTAA-GAGGGTGAGCTAAAAAGCTCAGTG
9083066 TGAGA
1 TGAGA
9083071 TTATCCTAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
35 12 0.32
37 25 0.66
38 1 0.03
ACGTcount: A:0.42, C:0.10, G:0.32, T:0.16
Consensus pattern (36 bp):
TGAGAAAACTAAGAGGGTGAGCTAAAAAGCTCAGTG
Found at i:9085594 original size:24 final size:24
Alignment explanation
Indices: 9085562--9085661 Score: 146
Period size: 24 Copynumber: 4.0 Consensus size: 24
9085552 TGACATTGTG
*
9085562 CTAAGTGAAATAAGACCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
9085586 CTAAGTGAAATAAGTCCATGGCAATGT
1 CTAAGTGAAATAAGTCCATGGC-A--T
*
9085613 GTTAAGTGAAATAAGTCCATGGCAT
1 -CTAAGTGAAATAAGTCCATGGCAT
9085638 CTAAGTGAAATAAGTCCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
9085662 TGTGTTAAGT
Statistics
Matches: 69, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
24 44 0.64
25 2 0.03
27 2 0.03
28 21 0.30
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:9085627 original size:28 final size:27
Alignment explanation
Indices: 9085558--9085673 Score: 145
Period size: 24 Copynumber: 4.4 Consensus size: 27
9085548 GATATGACAT
*
9085558 TGTGCTAAGTGAAATAAGACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
9085585 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
*
9085610 TGTGTTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
9085637 --T-CTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
*
9085661 TTGTGTTAAGTGA
1 -TGTGCTAAGTGA
9085674 GAAATTTCCC
Statistics
Matches: 77, Mismatches: 4, Indels: 15
0.80 0.04 0.16
Matches are distributed among these distances:
24 43 0.56
25 3 0.04
27 3 0.04
28 28 0.36
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:9085641 original size:52 final size:52
Alignment explanation
Indices: 9085558--9085673 Score: 205
Period size: 52 Copynumber: 2.2 Consensus size: 52
9085548 GATATGACAT
*
9085558 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
1 TGTGTTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
* *
9085610 TGTGTTAAGTGAAATAAGTCCATGGCATCTAAGTGAAATAAGTCCATGGCAT
1 TGTGTTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
9085662 TGTGTTAAGTGA
1 TGTGTTAAGTGA
9085674 GAAATTTCCC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (52 bp):
TGTGTTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
Found at i:9094408 original size:181 final size:181
Alignment explanation
Indices: 9094094--9094562 Score: 714
Period size: 181 Copynumber: 2.6 Consensus size: 181
9094084 ACTGCTTCAG
* * *
9094094 TCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC--GCAAACCTGCT-TTCTT
1 TCTT-AGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT-CCATCTTTC-AACTTGCTCTT-TT
* * *
9094156 GCTACCTCAGAGAGATAAGGC-TAGTGGCTTAAATCTACTCCATTGCTGATACATGGAGATAAGA
62 GCTACCTCAGAGAGATAAGGCTTAGTGG-TAAAATCTGCTCCATTGCCGATACATGGAGATAAGA
*
9094220 TTCACCATCTGCGAAGATCTGCTCCACTGCAATCTTAGAGAGATAAAATCTTCAAT
126 GTCACCATCTGCGAAGATCTGCTCCACTGCAATCTTAGAGAGATAAAATCTTCAAT
9094276 TCTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCCATCTTTCAACTTGCTCTTTTGCTA
1 TCTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCCATCTTTCAACTTGCTCTTTTGCTA
* *
9094341 CCTCAGAGAAATAAGGCTTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATAAGAGTCAC
66 CCTCAGAGAGATAAGGCTTAGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATAAGAGTCAC
* * *
9094406 CATCTGCGAAGATTTGCTCTACTGCAATCTTAGGGAGATAAAATCTTCAAT
131 CATCTGCGAAGATCTGCTCCACTGCAATCTTAGAGAGATAAAATCTTCAAT
* * *
9094457 TCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT-CATTTTTCAACTTGCTCTCTTGCTA
1 TCTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCCATCTTTCAACTTGCTCTTTTGCTA
*
9094521 CCTCAGAGAGATAAGGCTTAGTGGTAAGATCTGCTCCATTGC
66 CCTCAGAGAGATAAGGCTTAGTGGTAAAATCTGCTCCATTGC
9094563 AACTTTAGGG
Statistics
Matches: 265, Mismatches: 18, Indels: 10
0.90 0.06 0.03
Matches are distributed among these distances:
180 66 0.25
181 187 0.71
182 12 0.05
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (181 bp):
TCTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCCATCTTTCAACTTGCTCTTTTGCTA
CCTCAGAGAGATAAGGCTTAGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATAAGAGTCAC
CATCTGCGAAGATCTGCTCCACTGCAATCTTAGAGAGATAAAATCTTCAAT
Found at i:9094620 original size:45 final size:43
Alignment explanation
Indices: 9094439--9094625 Score: 125
Period size: 45 Copynumber: 4.2 Consensus size: 43
9094429 GCAATCTTAG
* * *
9094439 GGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCA
1 GGAGATAAGATCTTTAATTCTCAATCTGC-TCCTTGCTACCTCA
*
9094483 GGAAGATAAGACTCATT--TT-TCAA-CTTGCTCTCTTGCTACCTCA
1 GG-AGATAAGA-TCTTTAATTCTCAATC-TGCTC-CTTGCTACCTCA
* * ** * * * *
9094526 GAGAGATAAG-GC-TTAGTGGTAAGATCTGCTCCATTGCAACTTTA
1 G-GAGATAAGATCTTTAATTCTCA-ATCTGCTCC-TTGCTACCTCA
9094570 GGGAGATAAGATCTTTAATTCTCAATCTGCTTCCTTGCTACCTCA
1 -GGAGATAAGATCTTTAATTCTCAATCTGC-TCCTTGCTACCTCA
9094615 TGGAGATAAGA
1 -GGAGATAAGA
9094626 CTACTATCGC
Statistics
Matches: 109, Mismatches: 19, Indels: 29
0.69 0.12 0.18
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 4 0.04
43 29 0.27
44 27 0.25
45 34 0.31
46 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (43 bp):
GGAGATAAGATCTTTAATTCTCAATCTGCTCCTTGCTACCTCA
Found at i:9094734 original size:133 final size:133
Alignment explanation
Indices: 9094549--9094889 Score: 463
Period size: 133 Copynumber: 2.6 Consensus size: 133
9094539 TAGTGGTAAG
* * * ** *
9094549 ATCTGCTCCATTGCAACTTTAGGGAGATAAGATCT-TTAATTCTCAATCTGCTTCCTTGCTACCT
1 ATCTGCTCCACTACTAC-TTAGGGAGATAAGATCTACAAATTC-CAGTCTGCTTCCTTGCTACCT
* * *
9094613 CATGG-AGATAAGACTACTATCGCCAATCTGCTCCATTGTCGATACATGGAGATAAGATTTACTA
64 CA-GGAAGATAAGACTACTATCGCCAATCTGCTCCATTGCCGATACATAGAGATAAGATTCACTA
*
9094677 TTTTTA
128 TCTTTA
* *
9094683 ATCTGCTCTACTACTACTTAGGGAGATGAA-ATCTGCAAATTCCAGTCTGCTTCCTTGCTACCTC
1 ATCTGCTCCACTACTACTTAGGGAGAT-AAGATCTACAAATTCCAGTCTGCTTCCTTGCTACCTC
* *
9094747 AGGAAGATAAGACTATTATCGCCAGTCTGCTCCATTGCCGATACATAGAGATAAGATTCACTATC
65 AGGAAGATAAGACTACTATCGCCAATCTGCTCCATTGCCGATACATAGAGATAAGATTCACTATC
*
9094812 TTTG
130 TTTA
* * *
9094816 ATTTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAATTCCAGTCTGCTTCCTTGCTACCTCA
1 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAAATTCCAGTCTGCTTCCTTGCTACCTCA
9094881 GGAAGATAA
66 GGAAGATAA
9094890 AACTCATTCT
Statistics
Matches: 184, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
132 4 0.02
133 160 0.87
134 20 0.11
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.33
Consensus pattern (133 bp):
ATCTGCTCCACTACTACTTAGGGAGATAAGATCTACAAATTCCAGTCTGCTTCCTTGCTACCTCA
GGAAGATAAGACTACTATCGCCAATCTGCTCCATTGCCGATACATAGAGATAAGATTCACTATCT
TTA
Found at i:9095018 original size:45 final size:44
Alignment explanation
Indices: 9094969--9095067 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 44
9094959 CCAATACATA
* * * * *
9094969 GAGATAAGAT-TCACCATCTTCGATCTGCTCTACTGTAACTTCAGG
1 GAGATAAGATCTCA--ATCTTCAATCTACTCCACTGCAACCTCAGG
9095014 GAGATAAGATCGTCAATCTTCAATCTACTCCACTGCAACCTCAGG
1 GAGATAAGATC-TCAATCTTCAATCTACTCCACTGCAACCTCAGG
9095059 GAGATAAGA
1 GAGATAAGA
9095068 CTTGTTATGA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
45 44 0.94
47 3 0.06
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (44 bp):
GAGATAAGATCTCAATCTTCAATCTACTCCACTGCAACCTCAGG
Found at i:9095348 original size:64 final size:64
Alignment explanation
Indices: 9095247--9095441 Score: 336
Period size: 64 Copynumber: 3.0 Consensus size: 64
9095237 TTCATGTATC
* * *
9095247 ATGCTTATGCCAAATAATTAGGATGTTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCACCTAACTAGATGTG
*
9095311 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCACCTAACTAGATGTA
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCACCTAACTAGATGTG
**
9095375 ATGCTTATGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCACCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCACCTAACTAGATGTG
9095439 ATG
1 ATG
9095442 AATGGTATAT
Statistics
Matches: 124, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 124 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.31
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCACCTAACTAGATGTG
Found at i:9096594 original size:19 final size:19
Alignment explanation
Indices: 9096570--9096610 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
9096560 CTTTGATTGA
9096570 TTCTTTTTTTCT-TTTTTTT
1 TTCTTTTTTT-TATTTTTTT
9096589 TTCTTTTTTTTATTTTTTT
1 TTCTTTTTTTTATTTTTTT
9096608 TTC
1 TTC
9096611 AAGGTCTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (19 bp):
TTCTTTTTTTTATTTTTTT
Found at i:9103591 original size:23 final size:21
Alignment explanation
Indices: 9103565--9103611 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 21
9103555 ATTTATTGGA
9103565 TTTTTATTT-TGTGATTTTTGTTT
1 TTTTTATTTCTG-G-TTTTT-TTT
9103588 TTTTTATTTCTGGTTTTTTTT
1 TTTTTATTTCTGGTTTTTTTT
9103609 TTT
1 TTT
9103612 GGATTTTAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 6 0.26
22 5 0.22
23 10 0.43
24 2 0.09
ACGTcount: A:0.06, C:0.02, G:0.11, T:0.81
Consensus pattern (21 bp):
TTTTTATTTCTGGTTTTTTTT
Found at i:9109927 original size:13 final size:12
Alignment explanation
Indices: 9109909--9109938 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
9109899 AAATCTACTA
9109909 AAAAATAAACAAT
1 AAAAATAAA-AAT
9109922 AAAAATAAAAAT
1 AAAAATAAAAAT
9109934 AAAAA
1 AAAAA
9109939 GTAGTTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.13
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:9109937 original size:5 final size:6
Alignment explanation
Indices: 9109909--9109938 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
9109899 AAATCTACTA
9109909 AAAAAT AAACAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAA-AAT AAAAAT AAAAAT AAAAA
9109939 GTAGTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:9116981 original size:40 final size:40
Alignment explanation
Indices: 9116930--9117354 Score: 690
Period size: 40 Copynumber: 10.6 Consensus size: 40
9116920 CATTTGAATG
9116930 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
9116970 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
9117010 ATATCTGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
9117050 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
9117090 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
9117130 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
9117170 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
9117210 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
9117250 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
9117290 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
9117330 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
9117355 ATTGAGCTTG
Statistics
Matches: 362, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.01
40 359 0.99
41 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:9123733 original size:17 final size:19
Alignment explanation
Indices: 9123713--9123747 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
9123703 ATTAATATAT
9123713 TTATTAAA-CTA-ATTAAA
1 TTATTAAAGCTACATTAAA
9123730 TTATTAAAGCTACATTAA
1 TTATTAAAGCTACATTAA
9123748 CTTAAGGGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 3 0.19
19 5 0.31
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.40
Consensus pattern (19 bp):
TTATTAAAGCTACATTAAA
Found at i:9124569 original size:21 final size:19
Alignment explanation
Indices: 9124543--9124592 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
9124533 AGCTTATTGC
9124543 TCAACACAGGGCTACTGTAGT
1 TCAACACAGGGCTAC-GT-GT
* *
9124564 TCAACACAAGGTTACGTGT
1 TCAACACAGGGCTACGTGT
9124583 TGCAACACAG
1 T-CAACACAG
9124593 ACCTTGCGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 3 0.12
20 9 0.36
21 13 0.52
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (19 bp):
TCAACACAGGGCTACGTGT
Found at i:9125241 original size:288 final size:288
Alignment explanation
Indices: 9124725--9126113 Score: 2706
Period size: 288 Copynumber: 4.8 Consensus size: 288
9124715 AGCCTTTTGC
9124725 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
1 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
9124790 TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
66 TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
* *
9124855 TCCCCTCTTGCCTCGACACACATATGCGGAGCCATGGTCAAGAAAAAATGCATAAAGAAAATATA
131 TCCCCTCTTGCCTCGACACACATATACGGAGCCATGGTTAAGAAAAAATGCATAAAGAAAATATA
9124920 ACCAAAAAAGAGACAATGAACCTGGAAACCCAATTTAATCATACCCAAATTAATCCAACCTACGG
196 ACCAAAAAAGAGACAATGAACCTGGAAACCCAATTTAATCATACCCAAATTAATCCAACCTACGG
9124985 CCCATCAACACTCAAAAATTTGTTAAAA
261 CCCATCAACACTCAAAAATTTGTTAAAA
9125013 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
1 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
9125078 TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
66 TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
9125143 TCCCCTCTTGCCTCGACACACATATACGGAGCCATGGTTAAGAAAAAATGCATAAAGAAAATATA
131 TCCCCTCTTGCCTCGACACACATATACGGAGCCATGGTTAAGAAAAAATGCATAAAGAAAATATA
9125208 ACCAAAAAAGAGACAATGAACCTGGAAACCCAATTTAATCATACCCAAATTAATCCAACCTACGG
196 ACCAAAAAAGAGACAATGAACCTGGAAACCCAATTTAATCATACCCAAATTAATCCAACCTACGG
9125273 CCCATCAACACTCAAAAATTTGTTAAAA
261 CCCATCAACACTCAAAAATTTGTTAAAA
9125301 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
1 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
9125366 TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
66 TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
9125431 TCCCCTCTTGCCTCGACACACATATACGGAGCCATGGTTAAGAAAAAATGCATAAAGAAAATATA
131 TCCCCTCTTGCCTCGACACACATATACGGAGCCATGGTTAAGAAAAAATGCATAAAGAAAATATA
9125496 ACCAAAAAAGAGACAATGAACCTGGAAACCCAATTTAATCATACCCAAATTAATCCAACCTACGG
196 ACCAAAAAAGAGACAATGAACCTGGAAACCCAATTTAATCATACCCAAATTAATCCAACCTACGG
9125561 CCCATCAACACTCAAAAATTTGTTAAAA
261 CCCATCAACACTCAAAAATTTGTTAAAA
9125589 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
1 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
9125654 TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
66 TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
9125719 TCCCCTCTTGCCTCGACACACATATACGGAGCCATGGTTAAGAAAAAATGCATAAAGAAAATATA
131 TCCCCTCTTGCCTCGACACACATATACGGAGCCATGGTTAAGAAAAAATGCATAAAGAAAATATA
* *
9125784 ACCAAAAAAGAGACAGTGAACCTGGAAACCCAATTTAATCATACCCAAATTAATCCAACCTAAGG
196 ACCAAAAAAGAGACAATGAACCTGGAAACCCAATTTAATCATACCCAAATTAATCCAACCTACGG
9125849 CCCATCAACACTCAAAAATTTGTTAAAA
261 CCCATCAACACTCAAAAATTTGTTAAAA
9125877 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
1 ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
* * *
9125942 TGCCTAGAAAACATCGTTAAATGCGGAATGACATAAAATAACTACTATAAGTGACGGCAAGACAA
66 TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
9126007 TCCCCTCTTGCCTCGACACACATATACGGAGCCATGGTTAAGAAAAAATGCATAAAGAAAATATA
131 TCCCCTCTTGCCTCGACACACATATACGGAGCCATGGTTAAGAAAAAATGCATAAAGAAAATATA
*
9126072 ACCAAAAAAGAGACAGTGAACCTGGAAACCCAATTTAATCAT
196 ACCAAAAAAGAGACAATGAACCTGGAAACCCAATTTAATCAT
9126114 TTAGTAGAAA
Statistics
Matches: 1094, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
288 1094 1.00
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.25
Consensus pattern (288 bp):
ACATTATTTTATTAACTTTTAATCTTAACCTACTAATACCGAAAATATAATAATTAATTATAAAA
TGCCTAGAAAACATCGTTAAATGTGGAATGACATAAAATAACTACTATAAGTGACGACAAGTCAA
TCCCCTCTTGCCTCGACACACATATACGGAGCCATGGTTAAGAAAAAATGCATAAAGAAAATATA
ACCAAAAAAGAGACAATGAACCTGGAAACCCAATTTAATCATACCCAAATTAATCCAACCTACGG
CCCATCAACACTCAAAAATTTGTTAAAA
Found at i:9126528 original size:24 final size:22
Alignment explanation
Indices: 9126494--9126546 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 22
9126484 TTAATAAGGA
*
9126494 TTATTATATAATTAATTAAGGTT
1 TTATTAAATAATTAATTAA-GTT
9126517 TTAATTAAATAATTAATTAAGTT
1 TT-ATTAAATAATTAATTAAGTT
9126540 TTATTAA
1 TTATTAA
9126547 TTTTAAAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 5 0.18
23 7 0.25
24 16 0.57
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (22 bp):
TTATTAAATAATTAATTAAGTT
Found at i:9126985 original size:18 final size:18
Alignment explanation
Indices: 9126962--9127006 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
9126952 GTAGAAGGAT
9126962 GAAATTGAAATCAATTTC
1 GAAATTGAAATCAATTTC
*
9126980 GAAATTGAGATCAATTTC
1 GAAATTGAAATCAATTTC
9126998 GAAATTGAA
1 GAAATTGAA
9127007 GCTCAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.44, C:0.09, G:0.16, T:0.31
Consensus pattern (18 bp):
GAAATTGAAATCAATTTC
Found at i:9127020 original size:19 final size:19
Alignment explanation
Indices: 9126962--9127012 Score: 79
Period size: 18 Copynumber: 2.8 Consensus size: 19
9126952 GTAGAAGGAT
9126962 GAAATTGAA-ATCAATTTC
1 GAAATTGAAGATCAATTTC
9126980 GAAATTG-AGATCAATTTC
1 GAAATTGAAGATCAATTTC
*
9126998 GAAATTGAAGCTCAA
1 GAAATTGAAGATCAA
9127013 ATTTGAAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 1 0.03
18 23 0.77
19 6 0.20
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (19 bp):
GAAATTGAAGATCAATTTC
Found at i:9127996 original size:132 final size:132
Alignment explanation
Indices: 9127748--9128001 Score: 373
Period size: 132 Copynumber: 1.9 Consensus size: 132
9127738 ATGACACAGC
* * *
9127748 CGTGTGTTCAACAAATTTAGGTTGTTTTTTAGTTCACACGGCCTGACGACACGACCGTGTGACAC
1 CGTGTGTTCAACAAACTTAGGTTGTTTTTTAATTCACACGGCCTGACAACACGACCGTGTGACAC
* * ** * * * * *
9127813 TCGGTTGCATGGCATGTGATTTTTTCATGATTTGGGGACATAACTGTGTGATGGCACAGTGAACT
66 TCGATTACATGGCATGCAATTGTTCCACGATTTGGGGACACAACTGGGTGATGGCACAGTGAACT
9127878 GT
131 GT
* *
9127880 CGTGTGTTCAACAAACTTAGGTTGTTTTTTAATTCACACGGCCTGGCAACACGGCCGTGTGACAC
1 CGTGTGTTCAACAAACTTAGGTTGTTTTTTAATTCACACGGCCTGACAACACGACCGTGTGACAC
*
9127945 TCGATTACATGGCATGCAATTGTTCCACGATTTGGGGACACGACTGGGTGATGGCAC
66 TCGATTACATGGCATGCAATTGTTCCACGATTTGGGGACACAACTGGGTGATGGCAC
9128002 CACACAGCCT
Statistics
Matches: 107, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
132 107 1.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.31
Consensus pattern (132 bp):
CGTGTGTTCAACAAACTTAGGTTGTTTTTTAATTCACACGGCCTGACAACACGACCGTGTGACAC
TCGATTACATGGCATGCAATTGTTCCACGATTTGGGGACACAACTGGGTGATGGCACAGTGAACT
GT
Found at i:9128218 original size:22 final size:24
Alignment explanation
Indices: 9128193--9128237 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
9128183 TTGTATATAT
9128193 ATTAAATT-AT-TGAATGTTATTG
1 ATTAAATTCATGTGAATGTTATTG
9128215 ATTAAATTGCATGTGAATGTTAT
1 ATTAAATT-CATGTGAATGTTAT
9128238 GGTTTACTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.47
Consensus pattern (24 bp):
ATTAAATTCATGTGAATGTTATTG
Found at i:9131480 original size:40 final size:40
Alignment explanation
Indices: 9131425--9131608 Score: 226
Period size: 40 Copynumber: 4.5 Consensus size: 40
9131415 TATTCGGATG
*
9131425 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
9131465 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* ** * *
9131508 ATACCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
9131548 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
9131588 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
9131609 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 13 0.11
40 74 0.61
41 1 0.01
43 34 0.28
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Done.