Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 263 of 290
Found at i:90879931 original size:82 final size:81
Alignment explanation
Indices: 90879813--90879968 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
90879803 TGCTATATAA
* *
90879813 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
90879878 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
90879895 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
90879959 CACTTAGTGC
65 CACTTAGTGC
90879969 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:90888014 original size:27 final size:27
Alignment explanation
Indices: 90887984--90888161 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
90887974 ATATTGAGCC
* *
90887984 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
90888011 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
90888038 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
90888066 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
90888093 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
90888120 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
90888147 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
90888162 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:90888123 original size:82 final size:81
Alignment explanation
Indices: 90888005--90888160 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
90887995 TGCTATATAA
* *
90888005 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
90888070 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
90888087 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
90888151 CACTTAGTGC
65 CACTTAGTGC
90888161 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:90890932 original size:41 final size:43
Alignment explanation
Indices: 90890877--90890982 Score: 137
Period size: 43 Copynumber: 2.5 Consensus size: 43
90890867 GATGGCACTC
* * *
90890877 TCCCAAACAGGGTCTTACACGA-ATCAAATAC-AATGCCAATG
1 TCCCAGACATGGTCTTACACGACATCAAATACTAATGCCAACG
* *
90890918 TCCCAGACATGGTCTTACAC-ATCATCACATACTGATGCCAACG
1 TCCCAGACATGGTCTTACACGA-CATCAAATACTAATGCCAACG
90890961 TCCCAGACATGGTCTTACACGA
1 TCCCAGACATGGTCTTACACGA
90890983 GAACACATCG
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
40 1 0.02
41 18 0.32
42 8 0.14
43 28 0.50
44 1 0.02
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.22
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGACATCAAATACTAATGCCAACG
Found at i:90891517 original size:30 final size:27
Alignment explanation
Indices: 90891483--90891547 Score: 69
Period size: 30 Copynumber: 2.3 Consensus size: 27
90891473 TGTTCATACA
*
90891483 AGTCCATAAATTTCATTTATTTCACATTTT
1 AGTCCATAAATTT-A-TTATTT-ACAATTT
* *
90891513 AGTCCCTCAATTTATTATTTACAATTT
1 AGTCCATAAATTTATTATTTACAATTT
90891540 AG-CCATAA
1 AGTCCATAA
90891548 TTACTCAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
26 4 0.13
27 8 0.27
28 6 0.20
29 1 0.03
30 11 0.37
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.45
Consensus pattern (27 bp):
AGTCCATAAATTTATTATTTACAATTT
Found at i:90894299 original size:53 final size:53
Alignment explanation
Indices: 90894236--90894340 Score: 210
Period size: 53 Copynumber: 2.0 Consensus size: 53
90894226 TAAAGAGGAG
90894236 TATAACCATGCTACATATGAATAAAGATTCGGCTTGTTAGAGGGAGAAATACT
1 TATAACCATGCTACATATGAATAAAGATTCGGCTTGTTAGAGGGAGAAATACT
90894289 TATAACCATGCTACATATGAATAAAGATTCGGCTTGTTAGAGGGAGAAATAC
1 TATAACCATGCTACATATGAATAAAGATTCGGCTTGTTAGAGGGAGAAATAC
90894341 AAACTATGAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (53 bp):
TATAACCATGCTACATATGAATAAAGATTCGGCTTGTTAGAGGGAGAAATACT
Found at i:90902943 original size:43 final size:41
Alignment explanation
Indices: 90902882--90902962 Score: 99
Period size: 43 Copynumber: 1.9 Consensus size: 41
90902872 TAATATTACT
* * *
90902882 TGTAAGACCTTGTCTGGGATAGAGGCATAGATATGTGATAACA
1 TGTAAGACCATATATGGGATA-AGGCATAG-TATGTGATAACA
* *
90902925 TGTAAGACCATATATGGGATATGGCATTGTATGTGATA
1 TGTAAGACCATATATGGGATAAGGCATAGTATGTGATA
90902963 TATGTGTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
41 9 0.27
42 6 0.18
43 18 0.55
ACGTcount: A:0.32, C:0.10, G:0.27, T:0.31
Consensus pattern (41 bp):
TGTAAGACCATATATGGGATAAGGCATAGTATGTGATAACA
Found at i:90913158 original size:22 final size:21
Alignment explanation
Indices: 90913132--90913194 Score: 56
Period size: 22 Copynumber: 3.0 Consensus size: 21
90913122 ACTCATTGAG
90913132 TTGTGGTTTGAGTTCATGATT
1 TTGTGGTTTGAGTTCATGATT
* ** **
90913153 TATGTGATTTGAACTCAT-AAG
1 T-TGTGGTTTGAGTTCATGATT
*
90913174 TTGTGGTCTGAGTTCATGATT
1 TTGTGGTTTGAGTTCATGATT
90913195 ATGAGACACA
Statistics
Matches: 29, Mismatches: 11, Indels: 4
0.66 0.25 0.09
Matches are distributed among these distances:
20 12 0.41
21 4 0.14
22 13 0.45
ACGTcount: A:0.21, C:0.08, G:0.25, T:0.46
Consensus pattern (21 bp):
TTGTGGTTTGAGTTCATGATT
Found at i:90916073 original size:22 final size:22
Alignment explanation
Indices: 90916048--90916092 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
90916038 GATGCATTTC
*
90916048 ATGC-ATTTTCATGCCATTAATA
1 ATGCAATTATCATG-CATTAATA
*
90916070 ATGCAATTATCATGCATTCATA
1 ATGCAATTATCATGCATTAATA
90916092 A
1 A
90916093 ATCATACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (22 bp):
ATGCAATTATCATGCATTAATA
Found at i:90924607 original size:27 final size:27
Alignment explanation
Indices: 90924577--90924754 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
90924567 ATATTGAGTC
* * * *
90924577 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
90924604 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
90924631 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
90924659 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
90924686 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
90924713 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
90924740 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
90924755 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:90924716 original size:82 final size:81
Alignment explanation
Indices: 90924598--90924753 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
90924588 TGCTATATAA
* *
90924598 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
90924663 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
90924680 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
90924744 CACTTAGTGC
65 CACTTAGTGC
90924754 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:90936079 original size:22 final size:22
Alignment explanation
Indices: 90936053--90936097 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
90936043 ATTATCAAAG
*
90936053 ATGC-ATTTTCATGCCATTAATA
1 ATGCAATTATCATG-CATTAATA
*
90936075 ATGCAATTATCATGCATTCATA
1 ATGCAATTATCATGCATTAATA
90936097 A
1 A
90936098 ATCATACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (22 bp):
ATGCAATTATCATGCATTAATA
Found at i:90937272 original size:54 final size:54
Alignment explanation
Indices: 90937204--90937381 Score: 178
Period size: 54 Copynumber: 3.3 Consensus size: 54
90937194 AAGACCATGC
*
90937204 CAAGGCATGACATTGGTAAGTTTTACAAGGAAAGGAAATCATGTAAGACTGTGT
1 CAAGACATGACATTGGTAAGTTTTACAAGGAAAGGAAATCATGTAAGACTGTGT
* * * *** * * *** ** *
90937258 CAAGACATGGCATTGATAAACTACGATAAGTCAAA-GATCCCATGTAAGACCATGC
1 CAAGACATGACATTGGT-AAGTTTTACAAG-GAAAGGAAATCATGTAAGACTGTGT
*
90937313 CAAGGCATGACATTGGTAAGTTTTACAAGGAAAGGAAATCATGTAAGACTGTGT
1 CAAGACATGACATTGGTAAGTTTTACAAGGAAAGGAAATCATGTAAGACTGTGT
*
90937367 CAAGACATGGCATTG
1 CAAGACATGACATTG
90937382 ATAAACTACG
Statistics
Matches: 89, Mismatches: 32, Indels: 6
0.70 0.25 0.05
Matches are distributed among these distances:
53 3 0.03
54 48 0.54
55 35 0.39
56 3 0.03
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (54 bp):
CAAGACATGACATTGGTAAGTTTTACAAGGAAAGGAAATCATGTAAGACTGTGT
Found at i:90937336 original size:109 final size:109
Alignment explanation
Indices: 90937192--90937430 Score: 478
Period size: 109 Copynumber: 2.2 Consensus size: 109
90937182 AGGATACCAA
90937192 GTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTACAAGGAAAGGAAATCATGTAAGACTGTG
1 GTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTACAAGGAAAGGAAATCATGTAAGACTGTG
90937257 TCAAGACATGGCATTGATAAACTACGATAAGTCAAAGATCCCAT
66 TCAAGACATGGCATTGATAAACTACGATAAGTCAAAGATCCCAT
90937301 GTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTACAAGGAAAGGAAATCATGTAAGACTGTG
1 GTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTACAAGGAAAGGAAATCATGTAAGACTGTG
90937366 TCAAGACATGGCATTGATAAACTACGATAAGTCAAAGATCCCAT
66 TCAAGACATGGCATTGATAAACTACGATAAGTCAAAGATCCCAT
90937410 GTAAGACCATGCCAAGGCATG
1 GTAAGACCATGCCAAGGCATG
90937431 GCAATGATGA
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
109 130 1.00
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (109 bp):
GTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTACAAGGAAAGGAAATCATGTAAGACTGTG
TCAAGACATGGCATTGATAAACTACGATAAGTCAAAGATCCCAT
Found at i:90937431 original size:55 final size:55
Alignment explanation
Indices: 90937243--90937484 Score: 195
Period size: 55 Copynumber: 4.5 Consensus size: 55
90937233 GAAAGGAAAT
** *
90937243 CATGTAAGACTGTGTCAAGACATGGCATTGATAAACTACGATAAGTCAAAGATCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAACTACGATAAGTCAAAGATCC
* * * * *** * * ***
90937298 CATGTAAGACCATGCCAAGGCATGACATTGGT-AAGTTTTACAAG-GAAAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAACTACGATAAGTCAAA-GATCC
** *
90937352 CATGTAAGACTGTGTCAAGACATGGCATTGATAAACTACGATAAGTCAAAGATCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAACTACGATAAGTCAAAGATCC
* * * * * * * *
90937407 CATGTAAGACCATGCCAAGGCATGGCAATGAT-GAGTTC-ATAAGGCAAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAACTACGATAAGTCAAAGATCC
* *
90937460 CACGTAAGACCATGTCAAGACATGG
1 CATGTAAGACCATGCCAAGACATGG
90937485 AAATGGTAAG
Statistics
Matches: 140, Mismatches: 44, Indels: 8
0.73 0.23 0.04
Matches are distributed among these distances:
53 37 0.26
54 38 0.27
55 62 0.44
56 3 0.02
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (55 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATAAACTACGATAAGTCAAAGATCC
Found at i:90952484 original size:35 final size:35
Alignment explanation
Indices: 90952445--90952552 Score: 146
Period size: 35 Copynumber: 3.0 Consensus size: 35
90952435 GACCCGCAGG
90952445 CTATATGCTGGAATTATATCCGGGTTAAATCCCGC
1 CTATATGCTGGAATTATATCCGGGTTAAATCCCGC
*
90952480 CTATATGCTGGAATTATATCCGGGTTAAATTCCGCAGG
1 CTATATGCTGGAATTATATCCGGGTTAAA-TCC-C-GC
* *
90952518 CT-TCGTGCTGGTATTATATCCGGGTTAAATCCCGC
1 CTAT-ATGCTGGAATTATATCCGGGTTAAATCCCGC
90952553 AGGCCTAATG
Statistics
Matches: 65, Mismatches: 4, Indels: 8
0.84 0.05 0.10
Matches are distributed among these distances:
35 30 0.46
36 4 0.06
37 5 0.08
38 26 0.40
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (35 bp):
CTATATGCTGGAATTATATCCGGGTTAAATCCCGC
Found at i:90952536 original size:38 final size:37
Alignment explanation
Indices: 90952438--90952574 Score: 154
Period size: 38 Copynumber: 3.7 Consensus size: 37
90952428 GCTTAAAGAC
90952438 CCGCAGGCTATATGCTGGAATTATATCCGGGTTAAA-T
1 CCGCAGGCT-TATGCTGGAATTATATCCGGGTTAAATT
*
90952475 CC-C-GCCTATATGCTGGAATTATATCCGGGTTAAATT
1 CCGCAGGCT-TATGCTGGAATTATATCCGGGTTAAATT
* * *
90952511 CCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATC
1 CCGCAGGCTT-ATGCTGGAATTATATCCGGGTTAAATT
* * *
90952549 CCGCAGGCCTAATGTTGGTATTATAT
1 CCGCAGG-CTTATGCTGGAATTATAT
90952575 ATGAGTTTAA
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
35 30 0.34
36 4 0.05
37 4 0.05
38 47 0.54
39 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.32
Consensus pattern (37 bp):
CCGCAGGCTTATGCTGGAATTATATCCGGGTTAAATT
Found at i:90959385 original size:6 final size:6
Alignment explanation
Indices: 90959374--90959463 Score: 87
Period size: 6 Copynumber: 14.8 Consensus size: 6
90959364 AACCAAAATG
* *
90959374 AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC AGTATC AGTAA-C
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC
* *
90959423 AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAAT
90959464 ATGAATGCAA
Statistics
Matches: 69, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
5 5 0.07
6 58 0.84
7 5 0.07
8 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:90959427 original size:18 final size:18
Alignment explanation
Indices: 90959379--90959430 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
90959369 AAATGAGAAT
*
90959379 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCA-GTAA
*
90959398 CAGAATCAGAATCAGTAT
1 CAGAATCAGAATCAGTAA
90959416 CAGTAA-CAGAATCAG
1 CAG-AATCAGAATCAG
90959431 AATCAGTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 14 0.47
19 16 0.53
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.17
Consensus pattern (18 bp):
CAGAATCAGAATCAGTAA
Found at i:90959429 original size:24 final size:24
Alignment explanation
Indices: 90959374--90959460 Score: 138
Period size: 24 Copynumber: 3.6 Consensus size: 24
90959364 AACCAAAATG
* *
90959374 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGTATCA-GTAAC
90959399 AGAATCAGAATCAGTATCAGTAAC
1 AGAATCAGAATCAGTATCAGTAAC
*
90959423 AGAATCAGAATCAGTATTAGTAAC
1 AGAATCAGAATCAGTATCAGTAAC
90959447 AGAATCAGAATCAG
1 AGAATCAGAATCAG
90959461 AATATGAATG
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
24 41 0.69
25 18 0.31
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.20
Consensus pattern (24 bp):
AGAATCAGAATCAGTATCAGTAAC
Found at i:90959618 original size:27 final size:26
Alignment explanation
Indices: 90959581--90959660 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
90959571 AGCATGGTTG
*
90959581 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
90959607 CCAGATACAGATATTGTGGCCGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * * *
90959634 CCAAAACAGATAATGTGGCAAAGCCA
1 CCAGAACAGATATTGTGACAGAGCCA
90959660 C
1 C
90959661 TTAAAAGAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
26 24 0.52
27 22 0.48
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:90959908 original size:20 final size:20
Alignment explanation
Indices: 90959879--90959919 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
90959869 CGGGTCTATA
90959879 ATCGACACGAAGT-CCACAAT
1 ATCGACACGAA-TCCCACAAT
*
90959899 ATCGATACGAATCCCACAAT
1 ATCGACACGAATCCCACAAT
90959919 A
1 A
90959920 ACGGCACACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.41, C:0.29, G:0.12, T:0.17
Consensus pattern (20 bp):
ATCGACACGAATCCCACAAT
Found at i:90960049 original size:27 final size:26
Alignment explanation
Indices: 90959970--90960052 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
90959960 TCGATCGGTC
* * * *
90959970 AACAGATGTTGTGACAGAGTCACCAC
1 AACAGATATTGTGGCAGAGCCACCAG
*
90959996 ATACAGATATTGTGGTAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
90960023 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
90960050 AAC
1 AAC
90960053 GCTTCCTCCA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 8 0.17
27 40 0.83
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:90960498 original size:27 final size:27
Alignment explanation
Indices: 90960279--90960491 Score: 282
Period size: 27 Copynumber: 7.9 Consensus size: 27
90960269 GCAAAATGGA
* * *
90960279 AATTTTACCCTACAAGGGTATCTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
*
90960306 AATTCTACCCTACAGGGGTATTTTGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* * * *
90960333 ATTTTTACCCTACAAGGGTATTTCGAT
1 AATTCTACCCTACAGGGGTATTTCGGT
* * *
90960360 AATACTACCCTAAAGGGGTATTTCAGT
1 AATTCTACCCTACAGGGGTATTTCGGT
*
90960387 AATTCTACCCTACAGGGGTATTTTGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* **
90960414 AATTATACCCTACAGGGGTATTTCAAT
1 AATTCTACCCTACAGGGGTATTTCGGT
90960441 AATTCTACCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
*
90960468 AATTGTACCCTACAGGGGTATTTC
1 AATTCTACCCTACAGGGGTATTTC
90960492 AATAATTTCA
Statistics
Matches: 158, Mismatches: 28, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 158 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
AATTCTACCCTACAGGGGTATTTCGGT
Found at i:90960498 original size:81 final size:81
Alignment explanation
Indices: 90960279--90960490 Score: 325
Period size: 81 Copynumber: 2.6 Consensus size: 81
90960269 GCAAAATGGA
* * * * *
90960279 AATTTTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGTATTTTTACCCT
1 AATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTATACCCT
*
90960344 ACAAGGGTATTTCGAT
66 ACAAGGGTATTTCAAT
* * *
90960360 AATACTACCCTAAAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGGTAATTATACCCT
1 AATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTATACCCT
*
90960425 ACAGGGGTATTTCAAT
66 ACAAGGGTATTTCAAT
*
90960441 AATTCTACCCTACAGGGGTATTTCGGTAATTGTACCCTACAGGGGTATTT
1 AATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
90960491 CAATAATTTC
Statistics
Matches: 117, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 117 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (81 bp):
AATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTATACCCT
ACAAGGGTATTTCAAT
Found at i:90960533 original size:27 final size:27
Alignment explanation
Indices: 90960503--90960969 Score: 508
Period size: 27 Copynumber: 17.3 Consensus size: 27
90960493 ATAATTTCAC
* *
90960503 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* * *
90960530 AATCGAGGGTAAAATAATAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* *
90960557 ACTCAAGGGTAAAACAGTGATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* *
90960584 AATCAAGGGTAAAATAGTAATTCTGTG
1 AATCAAGGGTAAAACAGTAATTCTGTA
*
90960611 AATCGAGGGTAAAAC-GATAATTCTGTA
1 AATCAAGGGTAAAACAG-TAATTCTGTA
* * *
90960638 ACTCAAGGGTAAAATAGTGATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* *
90960665 AATCAAGGGTAAAACGGTAATTCTGTG
1 AATCAAGGGTAAAACAGTAATTCTGTA
* * * *
90960692 AATCGAGGGTAAAATAATAATTCTATA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* *
90960719 AACCGAGGGTAAAAC-GATAATTCTGTA
1 AATCAAGGGTAAAACAG-TAATTCTGTA
* * *
90960746 ACTCAAGGGTAAGACAGTGATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
** *
90960773 AATCAAGGGTAAAATGGTAATTCTGTG
1 AATCAAGGGTAAAACAGTAATTCTGTA
*
90960800 AATCGAGGGTAAAAC-GATAATTCTGTA
1 AATCAAGGGTAAAACAG-TAATTCTGTA
* * * *
90960827 ACTTAAGGGTAAAACAATGATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* *
90960854 AATCAAGGGTAAAACGGTAATTCTGTG
1 AATCAAGGGTAAAACAGTAATTCTGTA
* * *
90960881 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* *
90960908 AATCGAGGGTAAAACAATAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* * *
90960935 AATCAAGAGTAAAACGGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
90960962 AATCAAGG
1 AATCAAGG
90960970 CTACTTTGGT
Statistics
Matches: 361, Mismatches: 73, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.01
27 357 0.99
28 2 0.01
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCAAGGGTAAAACAGTAATTCTGTA
Found at i:90960647 original size:108 final size:108
Alignment explanation
Indices: 90960503--90960969 Score: 583
Period size: 108 Copynumber: 4.3 Consensus size: 108
90960493 ATAATTTCAC
* * * * *
90960503 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAATAATTCTGTAACTCAAGGGTA
1 AATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTA
* * * *
90960568 AAACAGTGATTCTGTAAATCAAGGGTAAAATAGTAATTCTGTG
66 AAACAGTAATTCTGTAAATCGAGGGTAAAATAATAATTCTGTA
* * *
90960611 AATCGAGGGTAAAACGATAATTCTGTAACTCAAGGGTAAAATAGTGATTCTGTAAATCAAGGGTA
1 AATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTA
* * *
90960676 AAACGGTAATTCTGTGAATCGAGGGTAAAATAATAATTCTATA
66 AAACAGTAATTCTGTAAATCGAGGGTAAAATAATAATTCTGTA
* * * *
90960719 AACCGAGGGTAAAACGATAATTCTGTAACTCAAGGGTAAGACAGTGATTCTGTAAATCAAGGGTA
1 AATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTA
** * **
90960784 AAATGGTAATTCTGTGAATCGAGGGTAAAACGATAATTCTGTA
66 AAACAGTAATTCTGTAAATCGAGGGTAAAATAATAATTCTGTA
* ** * * * * *
90960827 ACTTAAGGGTAAAACAATGATTCTGTAAATCAAGGGTAAAACGGTAATTCTGTGAATCGAGGGTA
1 AATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTA
* * *
90960892 AAATAGTAATTCTATAAATCGAGGGTAAAACAATAATTCTGTA
66 AAACAGTAATTCTGTAAATCGAGGGTAAAATAATAATTCTGTA
* * * *
90960935 AATCAAGAGTAAAACGGTAATTTTGTAAATCAAGG
1 AATCGAGGGTAAAACGATAATTCTGTAAATCAAGG
90960970 CTACTTTGGT
Statistics
Matches: 316, Mismatches: 43, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
108 316 1.00
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.27
Consensus pattern (108 bp):
AATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTA
AAACAGTAATTCTGTAAATCGAGGGTAAAATAATAATTCTGTA
Found at i:90961050 original size:27 final size:27
Alignment explanation
Indices: 90960974--90961091 Score: 119
Period size: 27 Copynumber: 4.4 Consensus size: 27
90960964 TCAAGGCTAC
** *
90960974 TTTGGTAATTTTACAAGTCAAGGGTAT
1 TTTGGTAATTTTACAAACCAGGGGTAT
** * * * **
90961001 TTCAGTAAGTTCAAAAATTAGGGGTAT
1 TTTGGTAATTTTACAAACCAGGGGTAT
*
90961028 TTTGCTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTACAAACCAGGGGTAT
* *
90961055 TTTGGTAATTTTGCAAACTAGGGGTAT
1 TTTGGTAATTTTACAAACCAGGGGTAT
90961082 TTTGGTAATT
1 TTTGGTAATT
90961092 GGTAAACTAA
Statistics
Matches: 72, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
TTTGGTAATTTTACAAACCAGGGGTAT
Found at i:90961156 original size:19 final size:19
Alignment explanation
Indices: 90961132--90961174 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
90961122 CAATACAGAT
90961132 GGCCCTAAAGCCCATTCTC
1 GGCCCTAAAGCCCATTCTC
90961151 GGCCCTAAAGCCCATTCTC
1 GGCCCTAAAGCCCATTCTC
90961170 GGCCC
1 GGCCC
90961175 AAATGGTCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.19, C:0.44, G:0.19, T:0.19
Consensus pattern (19 bp):
GGCCCTAAAGCCCATTCTC
Found at i:90962728 original size:22 final size:21
Alignment explanation
Indices: 90962698--90962739 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
90962688 TGAAATTTTA
90962698 ATTAGTATTATGAGATAAAATT
1 ATTAGTATTATGAGA-AAAATT
* *
90962720 ATTATTATTATTAGAAAAAT
1 ATTAGTATTATGAGAAAAAT
90962740 ATTGCTGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.43
Consensus pattern (21 bp):
ATTAGTATTATGAGAAAAATT
Found at i:90968757 original size:43 final size:43
Alignment explanation
Indices: 90968632--90968758 Score: 184
Period size: 43 Copynumber: 3.0 Consensus size: 43
90968622 GAGATTACAA
* * *
90968632 GTAAGACCATGTCTGGGAAATTGGCATTG-TATAGTGATTACGT
1 GTAAGACCATGTCTGGGACATTGGCATCGTTATA-TGATTTCGT
*
90968675 GTAAGACCATGTCTGGGACATTGGCATCATTATATGATTTCGT
1 GTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTTCGT
* *
90968718 GTAAGACCATGTCTAGGACATTGACATCGTTATATGATTTC
1 GTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTTC
90968759 TCCCTATACA
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
43 72 0.95
44 4 0.05
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
GTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTTCGT
Found at i:90969601 original size:55 final size:54
Alignment explanation
Indices: 90969463--90969617 Score: 188
Period size: 53 Copynumber: 2.9 Consensus size: 54
90969453 TTTTCCTTTT
* * * *
90969463 TGAACTTACCATTGCCATGTCTTGACATGGTTTTACGTGGTATCC-TTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTA
* * * **
90969516 TGATCTCGCCAATGCCATGCCTTGGTATGGTCTTACATGGTA-CCTTTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTA
*
90969569 TAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
1 T-G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
90969618 AACTGTCAAT
Statistics
Matches: 83, Mismatches: 15, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
52 2 0.02
53 42 0.51
54 1 0.01
55 34 0.41
56 4 0.05
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (54 bp):
TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTA
Found at i:90970270 original size:30 final size:31
Alignment explanation
Indices: 90970227--90970284 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
90970217 ATAACTCAAA
90970227 CTTTGGCAAAATTATAATTTTGCCCCTAAAC
1 CTTTGGCAAAATTATAATTTTGCCCCTAAAC
* * *
90970258 CTTT-GCAGAATTATGATTTTGTCCCTA
1 CTTTGGCAAAATTATAATTTTGCCCCTA
90970285 GGCTCGGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.40
Consensus pattern (31 bp):
CTTTGGCAAAATTATAATTTTGCCCCTAAAC
Found at i:90972370 original size:48 final size:48
Alignment explanation
Indices: 90972290--90972410 Score: 154
Period size: 48 Copynumber: 2.5 Consensus size: 48
90972280 TAGGGTTATT
*
90972290 TGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAATA
1 TGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATCAATA
* * * * ***
90972338 TGTGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATTGGCATTGTTA
1 TGAGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCATCAATA
90972386 TGAGAGCTAGTGTAAGACCATGTCT
1 TGAGAGCTAGTGTAAGACCATGTCT
90972411 GGGATGGTTG
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
47 3 0.05
48 57 0.93
49 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (48 bp):
TGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATCAATA
Found at i:90977973 original size:43 final size:41
Alignment explanation
Indices: 90977826--90977992 Score: 120
Period size: 43 Copynumber: 4.0 Consensus size: 41
90977816 GGTGTGATTT
* * * * * *
90977826 CATGTAAGACCATGTCTGGAACATTGGCATTGATATGAGATTA
1 CATGTAAGACCATATCTGGGATA-TGGCATCG-TATGTGATAA
** * * *
90977869 TGTGTAAGACCATATCTGGGACATTGGCATCGTATATGAT-T
1 CATGTAAGACCATATCTGGGATA-TGGCATCGTATGTGATAA
* * * * *
90977910 CATGTAAAACCCTGTTTGGGATAGAGGCATCGATATGTGATAA
1 CATGTAAGACCATATCTGGGATA-TGGCATCG-TATGTGATAA
* *
90977953 CCTGTAAGACCATATCTGGGATATGGCATTGTATGTGATA
1 CATGTAAGACCATATCTGGGATATGGCATCGTATGTGATA
90977993 TATGTGTTTT
Statistics
Matches: 96, Mismatches: 26, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
41 32 0.33
42 19 0.20
43 45 0.47
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (41 bp):
CATGTAAGACCATATCTGGGATATGGCATCGTATGTGATAA
Found at i:90982480 original size:39 final size:39
Alignment explanation
Indices: 90982384--90982482 Score: 144
Period size: 39 Copynumber: 2.5 Consensus size: 39
90982374 AGTCACTTTT
* * * * *
90982384 AAGCATATATCACATTACACATATAATTACATAATGTTC
1 AAGCATATATCGCAATACTCATATAATCACATAACGTTC
*
90982423 AAGCACATATCGCAATACTCATATAATCACATAACGTTC
1 AAGCATATATCGCAATACTCATATAATCACATAACGTTC
90982462 AAGCATATATCGCAATACTCA
1 AAGCATATATCGCAATACTCA
90982483 AAAACATGTT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.28
Consensus pattern (39 bp):
AAGCATATATCGCAATACTCATATAATCACATAACGTTC
Found at i:90986537 original size:19 final size:20
Alignment explanation
Indices: 90986513--90986550 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
90986503 ATCATTACCT
*
90986513 TGTTTGATGAAAAA-TCGAG
1 TGTTTGATCAAAAACTCGAG
90986532 TGTTTGATCAAAAACTCGA
1 TGTTTGATCAAAAACTCGA
90986551 AAGCTTGACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
TGTTTGATCAAAAACTCGAG
Found at i:90988830 original size:12 final size:13
Alignment explanation
Indices: 90988796--90988835 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
90988786 TTTTTTTAAG
90988796 TAGTTTATTGATA
1 TAGTTTATTGATA
90988809 TAGTCATTATT-ATA
1 TAGT--TTATTGATA
90988823 TAGTTTATTGATA
1 TAGTTTATTGATA
90988836 AAAATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 5 0.21
13 7 0.29
14 7 0.29
15 5 0.21
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.53
Consensus pattern (13 bp):
TAGTTTATTGATA
Found at i:90989742 original size:33 final size:33
Alignment explanation
Indices: 90989703--90989768 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
90989693 TCTGTTATGT
*
90989703 AAAGTAATGACATTGCCGTTTGTAAATTGAGTA
1 AAAGTAATGACATTGCCATTTGTAAATTGAGTA
90989736 AAAGTAATGACATTGCCATTTGTAAATTGAGTA
1 AAAGTAATGACATTGCCATTTGTAAATTGAGTA
90989769 GTAAAAATTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (33 bp):
AAAGTAATGACATTGCCATTTGTAAATTGAGTA
Found at i:90993393 original size:43 final size:43
Alignment explanation
Indices: 90993000--90993381 Score: 593
Period size: 43 Copynumber: 8.9 Consensus size: 43
90992990 GCATGAAACT
90993000 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * *
90993043 CGGTGATGTGTATTCGGGCCTTCGTGCATAGCAAGCTTCGTAC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * * * *
90993086 TGGTGATGTGTATTTGGGCCTTCGTGCCTAGAAGGTTTCATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
90993129 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * *
90993172 CTGTGATGTATATTCGGGCCTTCGTGCCTAGCAGGATTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
90993215 CGATGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
90993258 CGGTGATGTATATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
90993301 TGGTGATGTGTATTCGGGCCTTCATGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
90993344 CGGTGATGTGTATTCAGGTCTTCGTGCCTAGCAGGCTT
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
90993382 AATGCTAGTG
Statistics
Matches: 303, Mismatches: 36, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 303 1.00
ACGTcount: A:0.13, C:0.23, G:0.32, T:0.32
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:90993588 original size:29 final size:29
Alignment explanation
Indices: 90993550--90993649 Score: 114
Period size: 29 Copynumber: 3.4 Consensus size: 29
90993540 ATGATTAAAG
*
90993550 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCAAATTCCTTTAACCGA
* ** **
90993579 GCACTATGTGTGCGAGA-T-CAGTAATTGA
1 GCACTATGTGTGC-AAATTCCTTTAACCGA
90993607 GGCACTATGTGTGCAAATTCCTTTAACCGA
1 -GCACTATGTGTGCAAATTCCTTTAACCGA
90993637 GCACTATGTGTGC
1 GCACTATGTGTGC
90993650 GAGATCGGTA
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
28 8 0.14
29 40 0.71
30 8 0.14
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCAAATTCCTTTAACCGA
Found at i:90993669 original size:29 final size:29
Alignment explanation
Indices: 90993579--90993733 Score: 122
Period size: 29 Copynumber: 5.4 Consensus size: 29
90993569 CTTTAACCGA
* *
90993579 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTAACTGAG
* ** *
90993608 GCACTATGTGTGC-AAATTCCTTTAACCGA-
1 GCACTATGTGTGCGAGA-T-CGGTAACTGAG
*
90993637 GCACTATGTGTGCGAGATCGGTAATTGAG
1 GCACTATGTGTGCGAGATCGGTAACTGAG
* * * *
90993666 GCACTGTGTGTGCGAGTTC-TTCAACCGA-
1 GCACTATGTGTGCGAGATCGGT-AACTGAG
* *
90993694 GCACTATGTGTGCGAGATCGGTCAGTG-G
1 GCACTATGTGTGCGAGATCGGTAACTGAG
*
90993722 GCACTAAGTGTG
1 GCACTATGTGTG
90993734 TGAAATGAGA
Statistics
Matches: 97, Mismatches: 22, Indels: 15
0.72 0.16 0.11
Matches are distributed among these distances:
28 39 0.40
29 50 0.52
30 8 0.08
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCGGTAACTGAG
Found at i:90993713 original size:57 final size:58
Alignment explanation
Indices: 90993548--90993715 Score: 284
Period size: 58 Copynumber: 2.9 Consensus size: 58
90993538 GAATGATTAA
*
90993548 AGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATTG
1 AGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATTG
*
90993606 AGGCACTATGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATTG
1 AGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATTG
* * *
90993664 AGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTGTGCGAGATCGGT
1 AGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGT
90993716 CAGTGGGCAC
Statistics
Matches: 104, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
57 31 0.30
58 73 0.70
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (58 bp):
AGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATTG
Found at i:90995866 original size:27 final size:27
Alignment explanation
Indices: 90995836--90996013 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
90995826 ATATTGAGTC
* * * *
90995836 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
90995863 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
90995890 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
90995918 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
90995945 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
90995972 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
90995999 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
90996014 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:90995975 original size:82 final size:81
Alignment explanation
Indices: 90995857--90996012 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
90995847 TGCTATATAA
* *
90995857 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
90995922 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
90995939 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
90996003 CACTTAGTGC
65 CACTTAGTGC
90996013 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:90998230 original size:13 final size:13
Alignment explanation
Indices: 90998212--90998236 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90998202 TCAAGCAGAC
90998212 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
90998225 GCCCGTGTCCCT
1 GCCCGTGTCCCT
90998237 CACTCGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:91001055 original size:44 final size:44
Alignment explanation
Indices: 91000990--91001074 Score: 152
Period size: 44 Copynumber: 1.9 Consensus size: 44
91000980 ATAACATATA
*
91000990 CATCCACAATGAACTCGGACCAACTCAATGAGCTCAGATGCTTG
1 CATCCACAATGAACTCAGACCAACTCAATGAGCTCAGATGCTTG
*
91001034 CATCCATAATGAACTCAGACCAACTCAATGAGCTCAGATGC
1 CATCCACAATGAACTCAGACCAACTCAATGAGCTCAGATGC
91001075 CTCACATATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.20
Consensus pattern (44 bp):
CATCCACAATGAACTCAGACCAACTCAATGAGCTCAGATGCTTG
Found at i:91001124 original size:45 final size:45
Alignment explanation
Indices: 91001075--91001211 Score: 204
Period size: 45 Copynumber: 3.0 Consensus size: 45
91001065 GCTCAGATGC
91001075 CTCACATATATCACGAACTTGGACCAACTCAACAGGTTCGGATTT
1 CTCACATATATCACGAACTTGGACCAACTCAACAGGTTCGGATTT
* * *
91001120 CTCACATATATCACTAACTTGGACCAACTCAACAAGTTTGGATTT
1 CTCACATATATCACGAACTTGGACCAACTCAACAGGTTCGGATTT
* * *
91001165 TTCACATATATCACGAACTCGGACCAACTCAAC-GAGTTCGAATTT
1 CTCACATATATCACGAACTTGGACCAACTCAACAG-GTTCGGATTT
91001210 CT
1 CT
91001212 AAATTCCTAG
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
45 81 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (45 bp):
CTCACATATATCACGAACTTGGACCAACTCAACAGGTTCGGATTT
Found at i:91008882 original size:42 final size:42
Alignment explanation
Indices: 91008804--91008884 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
91008794 GTGCAGGGGA
* *
91008804 CACACGGCCTAAACACATGCCCGTGGGGCAAGCCGTGTGTCG
1 CACACGGCCTAAACACACGCCCGTGGGGCAACCCGTGTGTCG
* * * *
91008846 CACACGGCCTAGACACACGCCCGTGTGTCTACCCGTGTG
1 CACACGGCCTAAACACACGCCCGTGGGGCAACCCGTGTG
91008885 GACAAAAATA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.20, C:0.36, G:0.28, T:0.16
Consensus pattern (42 bp):
CACACGGCCTAAACACACGCCCGTGGGGCAACCCGTGTGTCG
Found at i:91021464 original size:61 final size:61
Alignment explanation
Indices: 91021368--91021484 Score: 218
Period size: 61 Copynumber: 1.9 Consensus size: 61
91021358 CGGGCTAAGT
91021368 CCCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGTCCCGAAGGCATTTGTGTTAGC
1 CCCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGTCCCGAAGGCATTTGTGTTAGC
91021429 CCCGAAGGCATTTGTGCGAGTTACTAA-TTCTGGGCTAAGTCCCGAAGGCATTTGTG
1 CCCGAAGGCATTTGTGCGAGTTACTAATTTC-GGGCTAAGTCCCGAAGGCATTTGTG
91021485 CGAGTTACCA
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
60 3 0.05
61 52 0.95
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (61 bp):
CCCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGTCCCGAAGGCATTTGTGTTAGC
Found at i:91021484 original size:40 final size:40
Alignment explanation
Indices: 91021429--91021561 Score: 178
Period size: 40 Copynumber: 3.3 Consensus size: 40
91021419 TTGTGTTAGC
*
91021429 CCCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGT
1 CCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGT
* *
91021469 CCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGT
1 CCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGT
* * * *
91021509 CCCGAAGGCATTGGTACGAGTTACT-ATAACCGGGCTATGT
1 CCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAGT
*
91021549 CCTGAAGGCATTT
1 CCCGAAGGCATTT
91021562 CAGCGAGTAG
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 1 0.01
40 80 0.99
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGT
Found at i:91030065 original size:24 final size:24
Alignment explanation
Indices: 91030033--91030080 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
91030023 ATTTGTTGTT
91030033 ATAGATTAAGAAAGGCATGGAATC
1 ATAGATTAAGAAAGGCATGGAATC
91030057 ATAGATTAAGAAAGGCATGGAATC
1 ATAGATTAAGAAAGGCATGGAATC
91030081 GACCTCGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.08, G:0.25, T:0.21
Consensus pattern (24 bp):
ATAGATTAAGAAAGGCATGGAATC
Found at i:91035253 original size:26 final size:27
Alignment explanation
Indices: 91035224--91035292 Score: 104
Period size: 26 Copynumber: 2.6 Consensus size: 27
91035214 TATAAATGAA
* *
91035224 TGTTTTTCCCTAATAAGGTAAAAT-AC
1 TGTTTTGCCCTTATAAGGTAAAATAAC
*
91035250 TGTTTTGCCCTTATGAGGTAAAATAAC
1 TGTTTTGCCCTTATAAGGTAAAATAAC
91035277 TGTTTTGCCCTTATAA
1 TGTTTTGCCCTTATAA
91035293 CTGTTTTGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
26 21 0.55
27 17 0.45
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (27 bp):
TGTTTTGCCCTTATAAGGTAAAATAAC
Found at i:91035294 original size:17 final size:17
Alignment explanation
Indices: 91035272--91035307 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
91035262 ATGAGGTAAA
91035272 ATAACTGTTTTGCCCTT
1 ATAACTGTTTTGCCCTT
91035289 ATAACTGTTTTGCCCTT
1 ATAACTGTTTTGCCCTT
91035306 AT
1 AT
91035308 GAGGTAAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.19, C:0.22, G:0.11, T:0.47
Consensus pattern (17 bp):
ATAACTGTTTTGCCCTT
Found at i:91039882 original size:40 final size:40
Alignment explanation
Indices: 91039852--91040021 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
91039842 GGACTAAGAT
* *
91039852 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
91039892 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
91039932 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
91039972 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
91040011 CCGAAGGCATT
1 CCGAAGGCATT
91040022 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 33 0.28
40 83 0.72
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:91039948 original size:80 final size:79
Alignment explanation
Indices: 91039799--91040021 Score: 241
Period size: 80 Copynumber: 2.8 Consensus size: 79
91039789 TTGAATGCTG
* * * * * * * * *
91039799 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
91039863 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* * *
91039879 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* **
91039944 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
91039959 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
91040022 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 82 0.68
81 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:91040041 original size:79 final size:80
Alignment explanation
Indices: 91039874--91040056 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
91039864 GTGCGAGATA
* * *
91039874 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
91039939 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
91039954 TTAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
91040018 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
91040033 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
91040057 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:91064974 original size:49 final size:49
Alignment explanation
Indices: 91064917--91065232 Score: 509
Period size: 49 Copynumber: 6.6 Consensus size: 49
91064907 TTAAACCCAT
91064917 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
91064966 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
91065015 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
91065064 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
*
91065113 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
* * ** * * *
91065160 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAATGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
*
91065207 ATGTGAAAGTGCATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
91065233 TCCCGAAGGG
Statistics
Matches: 256, Mismatches: 9, Indels: 6
0.94 0.03 0.02
Matches are distributed among these distances:
47 95 0.37
48 1 0.00
49 160 0.62
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.31
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
Found at i:91074042 original size:19 final size:19
Alignment explanation
Indices: 91074018--91074062 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
91074008 GCAAAAGCTA
91074018 AAAAATTACTTTTGAATTC
1 AAAAATTACTTTTGAATTC
* * *
91074037 AAAAA-TATTTTTGACTTT
1 AAAAATTACTTTTGAATTC
91074055 AAAAATTA
1 AAAAATTA
91074063 TGGTCCCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (19 bp):
AAAAATTACTTTTGAATTC
Found at i:91074206 original size:12 final size:14
Alignment explanation
Indices: 91074186--91074224 Score: 55
Period size: 12 Copynumber: 2.9 Consensus size: 14
91074176 GAAAAAAAAA
91074186 TATTTTAATTTTTC
1 TATTTTAATTTTTC
*
91074200 -A-TTTAATTTCTC
1 TATTTTAATTTTTC
91074212 TATTTTAATTTTT
1 TATTTTAATTTTT
91074225 AAATTTCTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 10 0.48
13 2 0.10
14 9 0.43
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (14 bp):
TATTTTAATTTTTC
Found at i:91087947 original size:20 final size:20
Alignment explanation
Indices: 91087922--91087964 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
91087912 CAACCCAATT
*
91087922 TTTTATTTTTCT-TTATTTTA
1 TTTTATTTTT-TATTACTTTA
91087942 TTTTATTTTTTATTACTTTA
1 TTTTATTTTTTATTACTTTA
91087962 TTT
1 TTT
91087965 GGATATTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTATTTTTTATTACTTTA
Found at i:91089789 original size:30 final size:31
Alignment explanation
Indices: 91089753--91089821 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
91089743 TTGCACAAGA
* *
91089753 GTAAATACTCAAA-ATTTGAGGGGCTAA-AGT
1 GTAAATA-TCAAATATTTGAAGGACTAATAGT
*
91089783 GTAAATATGAAATATTTGAAGGACTAATAGT
1 GTAAATATCAAATATTTGAAGGACTAATAGT
*
91089814 ATAAATAT
1 GTAAATAT
91089822 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 4 0.12
30 19 0.58
31 10 0.30
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.30
Consensus pattern (31 bp):
GTAAATATCAAATATTTGAAGGACTAATAGT
Found at i:91090086 original size:24 final size:25
Alignment explanation
Indices: 91090053--91090100 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
91090043 TTAATTAGAT
91090053 AAATATTATTTTATTAATATTTTAA
1 AAATATTATTTTATTAATATTTTAA
*
91090078 AAATA-TATTTTATTATTATTTTA
1 AAATATTATTTTATTAATATTTTA
91090101 TTAGTATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
AAATATTATTTTATTAATATTTTAA
Found at i:91091406 original size:24 final size:24
Alignment explanation
Indices: 91091374--91091444 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
91091364 CTATCAGGAG
91091374 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
91091398 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
91091422 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
91091445 GGAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:91091456 original size:48 final size:48
Alignment explanation
Indices: 91091374--91091467 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
91091364 CTATCAGGAG
** * *
91091374 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAT
91091422 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
91091468 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.23
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAT
Found at i:91095504 original size:94 final size:95
Alignment explanation
Indices: 91095394--91095595 Score: 298
Period size: 94 Copynumber: 2.1 Consensus size: 95
91095384 GTTATGTGAA
* * *
91095394 AGCCAGTATAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGGGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGACGAGGGCCAGTGTAAGACATG
*
91095459 TCTGGGACATGCATCAGCCAC-ATTATGAT
66 TCTGGGACATGCATCAGCCACGATGATGAT
* * * * *
91095488 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACGTAGAGATGAGTGCCAGTGTTAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGACGAGGGCCAGTGTAAGACATG
* *
91095553 TCTGGGACATGCATCGGCCTCGATGATGAT
66 TCTGGGACATGCATCAGCCACGATGATGAT
91095583 AGCCAGTGTAAGA
1 AGCCAGTGTAAGA
91095596 TGTGTCTAGG
Statistics
Matches: 96, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
94 76 0.79
95 20 0.21
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (95 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGACGAGGGCCAGTGTAAGACATG
TCTGGGACATGCATCAGCCACGATGATGAT
Found at i:91095506 original size:47 final size:47
Alignment explanation
Indices: 91095394--91095610 Score: 164
Period size: 47 Copynumber: 4.6 Consensus size: 47
91095384 GTTATGTGAA
* *
91095394 AGCCAGTATAAGACCATGTCTGGGACATGGCATCG--ACATTGA-GACG
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGCCACA-TGATGACT
* *
91095440 AGGGCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCACATTATGA-T
1 A--GCCAGTGTAAGACATGTCTGGGACATGGCATC-GCCACATGATGACT
* * * *
91095488 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACGTAGA-GATGAGT
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCG-C-CACATGATGACT
* *
91095537 -GCCAGTGTTAGACATGTCTGGGACAT-GCATCGGCCTCGATGATGA-T
1 AGCCAGTGTAAGACATGTCTGGGACATGGCATC-GCCAC-ATGATGACT
** *
91095583 AGCCAGTGTAAGATGTGTCTAGGACATG
1 AGCCAGTGTAAGACATGTCTGGGACATG
91095611 TATTGGCTAA
Statistics
Matches: 137, Mismatches: 18, Indels: 30
0.74 0.10 0.16
Matches are distributed among these distances:
46 25 0.18
47 70 0.51
48 34 0.25
49 8 0.06
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
AGCCAGTGTAAGACATGTCTGGGACATGGCATCGCCACATGATGACT
Found at i:91101362 original size:94 final size:95
Alignment explanation
Indices: 91101252--91101453 Score: 298
Period size: 94 Copynumber: 2.1 Consensus size: 95
91101242 GTTATGTGAA
* * *
91101252 AGCCAGTATAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGGGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGACGAGGGCCAGTGTAAGACATG
*
91101317 TCTGGGACATGCATCAGCCAC-ATTATGAT
66 TCTGGGACATGCATCAGCCACGATGATGAT
* * * * *
91101346 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACGTAGAGATGAGTGCCAGTGTTAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGACGAGGGCCAGTGTAAGACATG
* *
91101411 TCTGGGACATGCATCGGCCTCGATGATGAT
66 TCTGGGACATGCATCAGCCACGATGATGAT
91101441 AGCCAGTGTAAGA
1 AGCCAGTGTAAGA
91101454 TGTGTCTAGG
Statistics
Matches: 96, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
94 76 0.79
95 20 0.21
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (95 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGACGAGGGCCAGTGTAAGACATG
TCTGGGACATGCATCAGCCACGATGATGAT
Found at i:91101364 original size:47 final size:47
Alignment explanation
Indices: 91101252--91101468 Score: 164
Period size: 47 Copynumber: 4.6 Consensus size: 47
91101242 GTTATGTGAA
* *
91101252 AGCCAGTATAAGACCATGTCTGGGACATGGCATCG--ACATTGA-GACG
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGCCACA-TGATGACT
* *
91101298 AGGGCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCACATTATGA-T
1 A--GCCAGTGTAAGACATGTCTGGGACATGGCATC-GCCACATGATGACT
* * * *
91101346 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACGTAGA-GATGAGT
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCG-C-CACATGATGACT
* *
91101395 -GCCAGTGTTAGACATGTCTGGGACAT-GCATCGGCCTCGATGATGA-T
1 AGCCAGTGTAAGACATGTCTGGGACATGGCATC-GCCAC-ATGATGACT
** *
91101441 AGCCAGTGTAAGATGTGTCTAGGACATG
1 AGCCAGTGTAAGACATGTCTGGGACATG
91101469 TATTGGCTAA
Statistics
Matches: 137, Mismatches: 18, Indels: 30
0.74 0.10 0.16
Matches are distributed among these distances:
46 25 0.18
47 70 0.51
48 34 0.25
49 8 0.06
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
AGCCAGTGTAAGACATGTCTGGGACATGGCATCGCCACATGATGACT
Found at i:91114333 original size:174 final size:174
Alignment explanation
Indices: 91114043--91114652 Score: 1157
Period size: 174 Copynumber: 3.5 Consensus size: 174
91114033 NNNNNNNNNN
91114043 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
1 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
*
91114108 TTTGGACAGTGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAA
66 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAA
*
91114173 GTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
131 GTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
*
91114217 GTGCGAACTCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
1 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
91114282 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAA
66 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAA
*
91114347 GTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATGT
131 GTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
91114391 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
1 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
91114456 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAA
66 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAA
91114521 GTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
131 GTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
* * *
91114565 GTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
1 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
91114630 TTTGGACAGCGGAAAAGGTAAGT
66 TTTGGACAGCGGAAAAGGTAAGT
91114653 ACCTTGAGTT
Statistics
Matches: 427, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 427 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (174 bp):
GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAA
GTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
Found at i:91117240 original size:20 final size:20
Alignment explanation
Indices: 91117215--91117255 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
91117205 GGCAAATGGA
91117215 AAGTTAGAAAAATGAATTAT
1 AAGTTAGAAAAATGAATTAT
91117235 AAGTTAGAAAAATGAATTAT
1 AAGTTAGAAAAATGAATTAT
91117255 A
1 A
91117256 TTCTTTCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.29
Consensus pattern (20 bp):
AAGTTAGAAAAATGAATTAT
Found at i:91117548 original size:66 final size:70
Alignment explanation
Indices: 91117421--91117555 Score: 188
Period size: 66 Copynumber: 2.0 Consensus size: 70
91117411 TATTAATTTT
* * *
91117421 CATGTCTTTTATATTTTGACTGAATTAATTAATATAAATGTTTATATTAATAAATTAGGTAAAAT
1 CATGTCTTTTACATTTTGACCGAA-TAATTAATATAAATGTTTATATTAATAAATTAGGTAAAAC
91117486 ATATTC
65 ATATTC
* *
91117492 CATGTCTTTTACATTTTGACCG-A-AATT-A-ATAACTGTTTATATTAATAAATTCGGTAAAACA
1 CATGTCTTTTACATTTTGACCGAATAATTAATATAAATGTTTATATTAATAAATTAGGTAAAACA
91117553 TAT
66 TAT
91117556 ACAATTAATA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
66 33 0.56
67 1 0.02
68 4 0.07
70 1 0.02
71 20 0.34
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.44
Consensus pattern (70 bp):
CATGTCTTTTACATTTTGACCGAATAATTAATATAAATGTTTATATTAATAAATTAGGTAAAACA
TATTC
Found at i:91117587 original size:204 final size:204
Alignment explanation
Indices: 91117316--91117693 Score: 620
Period size: 204 Copynumber: 1.9 Consensus size: 204
91117306 ATTAATTAAT
* *
91117316 ATAACTTTTCATATTAATAAAGTCATTAAAATATATACAATTAATATCTTGTATGAATCAAATTC
1 ATAACTTTTCATATTAATAAAGTCAGTAAAACATATACAATTAATATCTTGTATGAATCAAATTC
* *
91117381 ATATATTAATTATATTTTTTTCCGAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTG-AA
66 ATATATTAATTATA-TTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAA
*
91117445 TTAATTAATATAAATGTTTATATTAATAAATT-AGGTAAAATATATTCCATGTCTTTTACATTTT
130 TTAATTAATATAAATGTTTATATTAATAAATTCA-ATAAAATATATTCCATGTCTTTTACATTTT
91117509 GACCGAAATTA
194 GACCGAAATTA
* *
91117520 ATAACTGTTT-ATATTAATAAATTCGGTAAAACATATACAATTAATAT-TTCGTATGAATCAAAT
1 ATAACT-TTTCATATTAATAAAGTCAGTAAAACATATACAATTAATATCTT-GTATGAATCAAAT
91117583 TCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAA
64 TCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAA
*
91117648 ATTAATTAATATAATTGTTTATATTAATAAATTCAATAAAATATAT
129 ATTAATTAATATAAATGTTTATATTAATAAATTCAATAAAATATAT
91117694 ACAATTAATA
Statistics
Matches: 162, Mismatches: 8, Indels: 8
0.91 0.04 0.04
Matches are distributed among these distances:
203 47 0.29
204 111 0.69
205 4 0.02
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.45
Consensus pattern (204 bp):
ATAACTTTTCATATTAATAAAGTCAGTAAAACATATACAATTAATATCTTGTATGAATCAAATTC
ATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAAT
TAATTAATATAAATGTTTATATTAATAAATTCAATAAAATATATTCCATGTCTTTTACATTTTGA
CCGAAATTA
Found at i:91117634 original size:132 final size:136
Alignment explanation
Indices: 91117492--91117737 Score: 356
Period size: 138 Copynumber: 1.8 Consensus size: 136
91117482 AAATATATTC
**
91117492 CATGTCTTTTACATTTTGACCG-A-AATT-A-ATAACTGTTTATATTAATAAATTCGGTAAAACA
1 CATGTCTTTTACATTTTGACCGAATAATTAATATAACTGTTTATATTAATAAATTCAATAAAACA
* *
91117553 TATACAATTAATATTTCGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAGAATATT
66 TATACAATTAATATTTCGTATAAATCAAATTCAGATATTAATTATATTCTTTCCAAAAGAATATT
91117618 AATTTT
131 AATTTT
* * *
91117624 CATGTCTTTTATATTTTGACTGAAATTAATTAATATAATTGTTTATATTAATAAATTCAATAAAA
1 CATGTCTTTTACATTTTGACCG-AA-TAATTAATATAACTGTTTATATTAATAAATTCAATAAAA
* * *
91117689 TATATACAATTAATATTTTGTATAAATTAAATTCAGATATTAATTATAT
64 CATATACAATTAATATTTCGTATAAATCAAATTCAGATATTAATTATAT
91117738 CTATGTTCTC
Statistics
Matches: 98, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
132 20 0.20
134 1 0.01
136 4 0.04
137 1 0.01
138 72 0.73
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (136 bp):
CATGTCTTTTACATTTTGACCGAATAATTAATATAACTGTTTATATTAATAAATTCAATAAAACA
TATACAATTAATATTTCGTATAAATCAAATTCAGATATTAATTATATTCTTTCCAAAAGAATATT
AATTTT
Found at i:91118470 original size:27 final size:27
Alignment explanation
Indices: 91118432--91118488 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
91118422 TACTATTGTG
91118432 ACTATTACACAATAATCCAAGAAACAT
1 ACTATTACACAATAATCCAAGAAACAT
91118459 ACTATTACACAATAATCCAAGAAACAT
1 ACTATTACACAATAATCCAAGAAACAT
91118486 ACT
1 ACT
91118489 CATAGCGGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.51, C:0.23, G:0.04, T:0.23
Consensus pattern (27 bp):
ACTATTACACAATAATCCAAGAAACAT
Found at i:91121983 original size:20 final size:20
Alignment explanation
Indices: 91121958--91121997 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
91121948 CAGCTTGTGT
91121958 GAGCAGCTCATGTAGCTACA
1 GAGCAGCTCATGTAGCTACA
91121978 GAGCAGCTCATGTAGCTACA
1 GAGCAGCTCATGTAGCTACA
91121998 CCTTGACTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.20
Consensus pattern (20 bp):
GAGCAGCTCATGTAGCTACA
Found at i:91128712 original size:158 final size:158
Alignment explanation
Indices: 91128424--91128741 Score: 636
Period size: 158 Copynumber: 2.0 Consensus size: 158
91128414 TTGGGCTTGG
91128424 CCGGTTATTATCGAAGGTTTGTAAAAGGATTTTCCATGATAGCGACTCCGATGACGAAGGTGCTA
1 CCGGTTATTATCGAAGGTTTGTAAAAGGATTTTCCATGATAGCGACTCCGATGACGAAGGTGCTA
91128489 CAGAAAGACATTAAGTTTGAATGGATAGAGAAGTGTCAATAAAGTTTTGAAAAGTTAAAGACATT
66 CAGAAAGACATTAAGTTTGAATGGATAGAGAAGTGTCAATAAAGTTTTGAAAAGTTAAAGACATT
91128554 GCTGACCGAAGCTCCTGTTTTAGTGCTA
131 GCTGACCGAAGCTCCTGTTTTAGTGCTA
91128582 CCGGTTATTATCGAAGGTTTGTAAAAGGATTTTCCATGATAGCGACTCCGATGACGAAGGTGCTA
1 CCGGTTATTATCGAAGGTTTGTAAAAGGATTTTCCATGATAGCGACTCCGATGACGAAGGTGCTA
91128647 CAGAAAGACATTAAGTTTGAATGGATAGAGAAGTGTCAATAAAGTTTTGAAAAGTTAAAGACATT
66 CAGAAAGACATTAAGTTTGAATGGATAGAGAAGTGTCAATAAAGTTTTGAAAAGTTAAAGACATT
91128712 GCTGACCGAAGCTCCTGTTTTAGTGCTA
131 GCTGACCGAAGCTCCTGTTTTAGTGCTA
91128740 CC
1 CC
91128742 TGAACCGGGA
Statistics
Matches: 160, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
158 160 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (158 bp):
CCGGTTATTATCGAAGGTTTGTAAAAGGATTTTCCATGATAGCGACTCCGATGACGAAGGTGCTA
CAGAAAGACATTAAGTTTGAATGGATAGAGAAGTGTCAATAAAGTTTTGAAAAGTTAAAGACATT
GCTGACCGAAGCTCCTGTTTTAGTGCTA
Found at i:91130199 original size:46 final size:45
Alignment explanation
Indices: 91130132--91130306 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
91130122 TGTAACCCGC
*
91130132 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
91130178 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * * *
91130224 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
91130271 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
91130307 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 19, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 69 0.66
47 33 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:91130251 original size:93 final size:93
Alignment explanation
Indices: 91130139--91130311 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
91130129 CGCCCATAAG
* * *
91130139 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
91130204 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
91130232 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
91130297 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
91130312 CAAATATCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:91138285 original size:44 final size:44
Alignment explanation
Indices: 91138222--91138306 Score: 136
Period size: 44 Copynumber: 1.9 Consensus size: 44
91138212 ACCTGTTGAG
*
91138222 TCTACCGAATTTATAATTAAAGTGTCAAAT-TCATTAGGAAAACA
1 TCTACCAAATTTATAATTAAAGTGTCAAATCT-ATTAGGAAAACA
*
91138266 TCTACCAAATTTATGATTAAAGTGTCAAATCTATTAGGAAA
1 TCTACCAAATTTATAATTAAAGTGTCAAATCTATTAGGAAA
91138307 GCATGTGATA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 37 0.97
45 1 0.03
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.33
Consensus pattern (44 bp):
TCTACCAAATTTATAATTAAAGTGTCAAATCTATTAGGAAAACA
Found at i:91146945 original size:18 final size:19
Alignment explanation
Indices: 91146922--91146960 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
91146912 TTTATCTCAA
*
91146922 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
91146940 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
91146959 TT
1 TT
91146961 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:91146988 original size:30 final size:30
Alignment explanation
Indices: 91146954--91147020 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
91146944 TTGTTCACAT
**
91146954 TCTTTTTCTCTCTCAAACTCTTTTTCATTC
1 TCTTTTTCAATCTCAAACTCTTTTTCATTC
*** *
91146984 TCTTTTTCAATCTCATTTTCTTTTTCATTT
1 TCTTTTTCAATCTCAAACTCTTTTTCATTC
91147014 TCTTTTT
1 TCTTTTT
91147021 GTTTTTCAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (30 bp):
TCTTTTTCAATCTCAAACTCTTTTTCATTC
Found at i:91147020 original size:18 final size:18
Alignment explanation
Indices: 91146978--91147029 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
91146968 AAACTCTTTT
*
91146978 TCATTCTCTTTTTCAATC
1 TCATTTTCTTTTTCAATC
* *
91146996 TCATTTTCTTTTTCATTT
1 TCATTTTCTTTTTCAATC
* *
91147014 TCTTTTTGTTTTTCAA
1 TCATTTTCTTTTTCAA
91147030 AAGCTTTTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.13, C:0.19, G:0.02, T:0.65
Consensus pattern (18 bp):
TCATTTTCTTTTTCAATC
Found at i:91147027 original size:12 final size:12
Alignment explanation
Indices: 91146996--91147020 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
91146986 TTTTTCAATC
91146996 TCATTTTCTTTT
1 TCATTTTCTTTT
91147008 TCATTTTCTTTT
1 TCATTTTCTTTT
91147020 T
1 T
91147021 GTTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:91149870 original size:10 final size:10
Alignment explanation
Indices: 91149855--91149884 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
91149845 GTTGAGCTAA
91149855 GGTTTAGCTC
1 GGTTTAGCTC
91149865 GGTTTAGCTC
1 GGTTTAGCTC
91149875 GGTTTAGCTC
1 GGTTTAGCTC
91149885 AGGCAACTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.20, G:0.30, T:0.40
Consensus pattern (10 bp):
GGTTTAGCTC
Found at i:91149923 original size:11 final size:11
Alignment explanation
Indices: 91149907--91149938 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
91149897 TGCGCTCGAA
91149907 TGAGCTGGATT
1 TGAGCTGGATT
91149918 TGAGCTGGATT
1 TGAGCTGGATT
91149929 TGAGCTGGAT
1 TGAGCTGGAT
91149939 GGAACTCGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.19, C:0.09, G:0.38, T:0.34
Consensus pattern (11 bp):
TGAGCTGGATT
Found at i:91153142 original size:18 final size:18
Alignment explanation
Indices: 91153119--91153154 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
91153109 TTTAATGTGT
*
91153119 TATAAATTACATAATATA
1 TATAAATAACATAATATA
91153137 TATAAATAACATAATATA
1 TATAAATAACATAATATA
91153155 AAGTATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (18 bp):
TATAAATAACATAATATA
Found at i:91154161 original size:16 final size:15
Alignment explanation
Indices: 91154140--91154195 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
91154130 CAAGAGAAAG
91154140 TAATTTAAAATTAAAA
1 TAATTTAAAA-TAAAA
91154156 TAATTT-AAATAAAA
1 TAATTTAAAATAAAA
* *
91154170 CAA-CTAACAATAAAA
1 TAATTTAA-AATAAAA
91154185 TAATTTAAAAT
1 TAATTTAAAAT
91154196 TAAACCCGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
13 1 0.03
14 8 0.24
15 15 0.45
16 9 0.27
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (15 bp):
TAATTTAAAATAAAA
Found at i:91158212 original size:16 final size:16
Alignment explanation
Indices: 91158187--91158226 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
91158177 AATTTGAACG
*
91158187 TTAAATTAGGGTATGT
1 TTAAAATAGGGTATGT
91158203 TTAAAATAGGGTATGT
1 TTAAAATAGGGTATGT
91158219 TTAAAATA
1 TTAAAATA
91158227 AGTAAATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (16 bp):
TTAAAATAGGGTATGT
Found at i:91165426 original size:14 final size:14
Alignment explanation
Indices: 91165409--91165448 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
91165399 CGAATGGAAT
*
91165409 GGTAGGAACGAAAG
1 GGTAGGAACAAAAG
91165423 GGTAGGAACAAAAG
1 GGTAGGAACAAAAG
* *
91165437 GATATGAACAAA
1 GGTAGGAACAAA
91165449 TTGGTCGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10
Consensus pattern (14 bp):
GGTAGGAACAAAAG
Found at i:91171307 original size:93 final size:93
Alignment explanation
Indices: 91171198--91171369 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
91171188 CGCCCATAAG
*
91171198 CGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
91171263 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
91171291 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
91171356 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
91171370 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:91171366 original size:46 final size:46
Alignment explanation
Indices: 91171191--91171366 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
91171181 TGTAACCCGC
* * *
91171191 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
91171237 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
91171287 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
91171330 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
91171367 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91174838 original size:54 final size:54
Alignment explanation
Indices: 91174763--91174956 Score: 205
Period size: 54 Copynumber: 3.6 Consensus size: 54
91174753 TTGGTAAGAT
* *
91174763 AAGGATATCATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACATGACATTGATGAGTTCTATAAGGC
* * *
91174817 AAGGAAATCTTGTAAGACCATGTCAAGACATGGA-ATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGACAT-GACATTGATGAGTT-CTATAAGGC
** * * * * *
91174872 AAAGG-TCGCATGTAAGACTATGCAAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGACATGACATTGATGAGTTCTATAAGGC
* * *
91174925 AAGGATACCACGTAAGACCATGTCAAGACATG
1 AAGGATATCATGTAAGACCATGCCAAGACATG
91174957 GCAATGGTAA
Statistics
Matches: 113, Mismatches: 22, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
52 4 0.04
53 27 0.24
54 39 0.35
55 39 0.35
56 4 0.04
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGACATGACATTGATGAGTTCTATAAGGC
Found at i:91174888 original size:55 final size:53
Alignment explanation
Indices: 91174771--91174957 Score: 186
Period size: 55 Copynumber: 3.5 Consensus size: 53
91174761 ATAAGGATAT
* * *
91174771 CATGTAAGACCATGCCAAGGCAT-GACATTGATAAGTTCTATAAGGCAAGGAAAT-
1 CATGTAAGACCATGTCAAGACATGGA-ATTGATGAGTTCTATAAGGCAAGG--ATC
*
91174825 CTTGTAAGACCATGTCAAGACATGGAATTGATGAGTTACTATAAGGCAAAGG-TC
1 CATGTAAGACCATGTCAAGACATGGAATTGATGAGTT-CTATAAGGC-AAGGATC
* * * *
91174879 GCATGTAAGACTATG-CAAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATAC
1 -CATGTAAGACCATGTC-AAGACATGGAATTGATGAGTTCTATAAGGCAAGGAT-C
*
91174933 CACGTAAGACCATGTCAAGACATGG
1 CATGTAAGACCATGTCAAGACATGG
91174958 CAATGGTAAG
Statistics
Matches: 112, Mismatches: 12, Indels: 19
0.78 0.08 0.13
Matches are distributed among these distances:
52 4 0.04
53 29 0.26
54 34 0.30
55 41 0.37
56 4 0.04
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGAATTGATGAGTTCTATAAGGCAAGGATC
Found at i:91178858 original size:48 final size:48
Alignment explanation
Indices: 91178792--91179224 Score: 705
Period size: 48 Copynumber: 9.1 Consensus size: 48
91178782 GTGGAAATTG
* *
91178792 ATGTACGAGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
91178840 ATGTATGAGATAAGTATATGTGGTAAACCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * *
91178888 ATGTATGAGATAAGTATATGTGGTAAACCCAAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
91178936 ATGTATGAGATATGTATATGTGGTAAAGCGGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
91178984 ATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCGAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
91179032 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
91179080 A--TAT---ATATGAGATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATG-TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
91179124 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
91179172 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
91179220 ATGTA
1 ATGTA
91179225 GGCGATGTGT
Statistics
Matches: 361, Mismatches: 18, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
43 5 0.01
44 33 0.09
46 6 0.02
48 312 0.86
49 5 0.01
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:91179479 original size:37 final size:37
Alignment explanation
Indices: 91179371--91179479 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
91179361 GGAAATATAT
*
91179371 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
91179408 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
91179445 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
91179480 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:91182802 original size:44 final size:44
Alignment explanation
Indices: 91182754--91182842 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
91182744 GCTAATAAAG
*
91182754 TATAAATAGTTGAAGATATTAACAATTGAAGTATCCATTATGAT
1 TATAAACAGTTGAAGATATTAACAATTGAAGTATCCATTATGAT
*
91182798 TATAAACAGTTGAAGATATTGACAATTGAAGTATCCATTATGAT
1 TATAAACAGTTGAAGATATTAACAATTGAAGTATCCATTATGAT
91182842 T
1 T
91182843 CAGCTTGGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.36
Consensus pattern (44 bp):
TATAAACAGTTGAAGATATTAACAATTGAAGTATCCATTATGAT
Found at i:91185595 original size:55 final size:54
Alignment explanation
Indices: 91185461--91185663 Score: 223
Period size: 54 Copynumber: 3.8 Consensus size: 54
91185451 GCATTGGCAC
* * ** *
91185461 TAAGACAAGAATACCATGTAAGACCATGCCAAGGTATGGCATTGATAAGTTCTA
1 TAAGGCAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTA
* * ** *
91185515 TAAGGCAAGGAAATCATGTAAGACCATGTTAAGACAGGGCATTGATGAGTTACTA
1 TAAGGCAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTA
* * *
91185570 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAA-AGCATGGCATTGGTGAGGTC-A
1 TAAGGC-AAGGATACCATGTAAGACCATGCCAAGA-CATGGCATTGATGAGTTCTA
* *
91185623 TAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 TAAGGCAAGGATACCATGTAAGACCATGCCAAGACATGGCA
91185664 ATGGTAAGTT
Statistics
Matches: 123, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 44 0.36
55 39 0.32
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
TAAGGCAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTA
Found at i:91189660 original size:53 final size:54
Alignment explanation
Indices: 91189531--91189672 Score: 169
Period size: 53 Copynumber: 2.6 Consensus size: 54
91189521 TACAAGGCAT
* * * * * *
91189531 GTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGCAAAGATCCCAT
1 GTAAGACCATGTCAAGACATGGCAATGGT-AAGTTCGATAAGGCAAAGATACCAC
* * * *
91189586 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGCAAGGATACCAC
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCGATAAGGCAAAGATACCAC
*
91189639 GTAAAACCATGTCAAGACATGGCAATGGTAAGTT
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
91189673 TGGAAAGGAA
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 45 0.62
54 3 0.04
55 25 0.34
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (54 bp):
GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCGATAAGGCAAAGATACCAC
Found at i:91193950 original size:15 final size:14
Alignment explanation
Indices: 91193924--91193953 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
91193914 ATCATTTAAC
91193924 ATGTAATTAACATA
1 ATGTAATTAACATA
91193938 ATGTAAGTTAACATA
1 ATGTAA-TTAACATA
91193953 A
1 A
91193954 ATGCTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (14 bp):
ATGTAATTAACATA
Found at i:91194033 original size:164 final size:162
Alignment explanation
Indices: 91193743--91194073 Score: 391
Period size: 164 Copynumber: 2.0 Consensus size: 162
91193733 TAATAAGCAT
* * * *
91193743 CATAACCAAACAATTAACATACAATTAACATGATGAAGATTAGCATGAATGTTATCAAAATCTCA
1 CATAACCAAACAATTAACATACAATTAACATAATGAAGATTAACATAAATGCTATCAAAATCTCA
* * * * *
91193808 TAGTCATAACTTACTCGATCACAATCCCATCAAGAGTTCATCACATAACGAGCTCATTACTTATG
66 TAATCATAACTTACTCAATCACAATCCAACCAAGAATTCATCACATAACGAGCTCATTACTTATG
*
91193873 A-G-TTTTACGTGCATACCTGTACCAACTCGTAA
131 AGGTTTTTAC--ACATACCTGTACCAACTCGTAA
* * ** *
91193905 CATAACCATATCATTTAACATGTAATTAACATAATGTAAG-TTAACATAAATGCTATTAAAATCT
1 CATAACCA-AACAATTAACATACAATTAACATAATG-AAGATTAACATAAATGCTATCAAAATCT
* * * * *
91193969 CATAATCATAAATTTGCTCAATCACAA-CCTAACCGAGAATTCATCACATACCGAGTTCATTACT
64 CATAATCAT-AACTTACTCAATCACAATCC-AACCAAGAATTCATCACATAACGAGCTCATTACT
*
91194033 TATGAGGTTTTTACACATACTTGTACCAACTCGTAA
127 TATGAGGTTTTTACACATACCTGTACCAACTCGTAA
91194069 CATAA
1 CATAA
91194074 TTACATCCTT
Statistics
Matches: 142, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
162 8 0.06
163 52 0.37
164 75 0.53
165 1 0.01
166 6 0.04
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (162 bp):
CATAACCAAACAATTAACATACAATTAACATAATGAAGATTAACATAAATGCTATCAAAATCTCA
TAATCATAACTTACTCAATCACAATCCAACCAAGAATTCATCACATAACGAGCTCATTACTTATG
AGGTTTTTACACATACCTGTACCAACTCGTAA
Found at i:91197203 original size:23 final size:22
Alignment explanation
Indices: 91197171--91197214 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
91197161 TATAATCCAT
* *
91197171 ACCAAATCATGCCAAATCATAA
1 ACCAAATCATACCAAAACATAA
91197193 ACCAAAGTCATACCAAAACATA
1 ACCAAA-TCATACCAAAACATA
91197215 TGTTTCATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.52, C:0.27, G:0.05, T:0.16
Consensus pattern (22 bp):
ACCAAATCATACCAAAACATAA
Found at i:91213243 original size:27 final size:26
Alignment explanation
Indices: 91213199--91213250 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
91213189 CTCGCTGCAA
*
91213199 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
91213226 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
91213251 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:91213318 original size:26 final size:27
Alignment explanation
Indices: 91213289--91213348 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
91213279 CCATATATAT
*
91213289 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
91213315 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
91213342 ATATCTG
1 ATATCTG
91213349 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:91220773 original size:31 final size:32
Alignment explanation
Indices: 91220735--91220796 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
91220725 CTCGCTACAA
*
91220735 TCTGGTGGCTTCA-CCAC-ATATATATATCTGT
1 TCTGGTGGCCT-AGCCACAATATATATATCTGT
*
91220766 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
91220797 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 1 0.04
31 14 0.52
32 12 0.44
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:91232808 original size:46 final size:48
Alignment explanation
Indices: 91232753--91232873 Score: 165
Period size: 46 Copynumber: 2.6 Consensus size: 48
91232743 TGGTATATGT
* *
91232753 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACA-A-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGACATACAA
* *
91232799 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGACATACAA
* * *
91232847 GCTAGTGTAAAACCTATCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
91232874 GCATGACACT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
46 40 0.61
47 1 0.02
48 25 0.38
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGACATACAA
Found at i:91232915 original size:48 final size:47
Alignment explanation
Indices: 91232853--91232978 Score: 132
Period size: 48 Copynumber: 2.6 Consensus size: 47
91232843 ACAAGCTAGT
* * *
91232853 GTAAAACCTATCTGGGACATGGCATGACACTAATAGTTGAG-AGCCAAA
1 GTAAGACCTGTCTGGGACATGGCATGACACT--TAGATGAGCAGCCAAA
* *
91232901 GTAAGACCTGTCTGGGACATGGCAT--CGACTTTGATGAGCTAGCCAAT
1 GTAAGACCTGTCTGGGACATGGCATGAC-ACTTAGATGAGC-AGCCAAA
91232948 GTAAGACCATGTCTGGGACATGGCATCGACA
1 GTAAGACC-TGTCTGGGACATGGCAT-GACA
91232979 TTTTATCCTT
Statistics
Matches: 66, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
45 6 0.09
46 1 0.02
47 17 0.26
48 40 0.61
50 1 0.02
51 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (47 bp):
GTAAGACCTGTCTGGGACATGGCATGACACTTAGATGAGCAGCCAAA
Found at i:91233936 original size:20 final size:20
Alignment explanation
Indices: 91233880--91233930 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 20
91233870 GAACATTATG
* *
91233880 AATTTTAATTAATTTTGTAGTT
1 AATTTTGATTAAATTTG--GTT
91233902 AATTTTGATTAAATTTGGTT
1 AATTTTGATTAAATTTGGTT
*
91233922 ATTTTTGAT
1 AATTTTGAT
91233931 AGAATTACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 11 0.42
22 15 0.58
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (20 bp):
AATTTTGATTAAATTTGGTT
Found at i:91239431 original size:269 final size:269
Alignment explanation
Indices: 91238952--91239490 Score: 1078
Period size: 269 Copynumber: 2.0 Consensus size: 269
91238942 GCATTTAGAC
91238952 GTATGCCATTCAGTTTATGTAATGAACCTGCTACATTTCAAAGATGTATGATGTCTATTTTCACT
1 GTATGCCATTCAGTTTATGTAATGAACCTGCTACATTTCAAAGATGTATGATGTCTATTTTCACT
91239017 GACATGGTTGAGAAATTTTTGGAAGTTTTCATGGACGAATTTTTAGTGTTTGGAGATACGTACGA
66 GACATGGTTGAGAAATTTTTGGAAGTTTTCATGGACGAATTTTTAGTGTTTGGAGATACGTACGA
91239082 TGATTGCTTAGCCAATCTGGCTAAGGTACTTAGGCGATGCGAAGAGACAAATCTAGTCCTTAATT
131 TGATTGCTTAGCCAATCTGGCTAAGGTACTTAGGCGATGCGAAGAGACAAATCTAGTCCTTAATT
91239147 GGGAAAAGTACCATTTTATGGTACGAGAAGGTATCGTTCTGGGGCATCGGATAACAAGACATGGG
196 GGGAAAAGTACCATTTTATGGTACGAGAAGGTATCGTTCTGGGGCATCGGATAACAAGACATGGG
91239212 ATCGAGGTA
261 ATCGAGGTA
91239221 GTATGCCATTCAGTTTATGTAATGAACCTGCTACATTTCAAAGATGTATGATGTCTATTTTCACT
1 GTATGCCATTCAGTTTATGTAATGAACCTGCTACATTTCAAAGATGTATGATGTCTATTTTCACT
91239286 GACATGGTTGAGAAATTTTTGGAAGTTTTCATGGACGAATTTTTAGTGTTTGGAGATACGTACGA
66 GACATGGTTGAGAAATTTTTGGAAGTTTTCATGGACGAATTTTTAGTGTTTGGAGATACGTACGA
91239351 TGATTGCTTAGCCAATCTGGCTAAGGTACTTAGGCGATGCGAAGAGACAAATCTAGTCCTTAATT
131 TGATTGCTTAGCCAATCTGGCTAAGGTACTTAGGCGATGCGAAGAGACAAATCTAGTCCTTAATT
91239416 GGGAAAAGTACCATTTTATGGTACGAGAAGGTATCGTTCTGGGGCATCGGATAACAAGACATGGG
196 GGGAAAAGTACCATTTTATGGTACGAGAAGGTATCGTTCTGGGGCATCGGATAACAAGACATGGG
91239481 ATCGAGGTA
261 ATCGAGGTA
91239490 G
1 G
91239491 ACAGAGCAAA
Statistics
Matches: 270, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
269 270 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (269 bp):
GTATGCCATTCAGTTTATGTAATGAACCTGCTACATTTCAAAGATGTATGATGTCTATTTTCACT
GACATGGTTGAGAAATTTTTGGAAGTTTTCATGGACGAATTTTTAGTGTTTGGAGATACGTACGA
TGATTGCTTAGCCAATCTGGCTAAGGTACTTAGGCGATGCGAAGAGACAAATCTAGTCCTTAATT
GGGAAAAGTACCATTTTATGGTACGAGAAGGTATCGTTCTGGGGCATCGGATAACAAGACATGGG
ATCGAGGTA
Found at i:91249093 original size:46 final size:45
Alignment explanation
Indices: 91249043--91249209 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 45
91249033 TGGTTGAGCA
91249043 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * *
91249089 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G
*
91249134 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
*
91249182 -CCTGAGCTCGTTGAGTTGAGTCCGAGTT
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTT
91249210 GGCTTATGGG
Statistics
Matches: 103, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 53 0.51
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATG
Found at i:91249199 original size:93 final size:93
Alignment explanation
Indices: 91249040--91249209 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
91249030 GGATGGTTGA
*
91249040 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGTCCGAACTCGTTGAGT
91249105 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
91249133 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGTCC-GAACTCGTTGAG
91249197 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
91249210 GGCTTATGGG
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:91256669 original size:46 final size:46
Alignment explanation
Indices: 91256619--91256794 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
91256609 TGATTGAGCA
91256619 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
91256665 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
91256710 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
91256758 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91256795 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:91256775 original size:93 final size:93
Alignment explanation
Indices: 91256616--91256787 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
91256606 GGATGATTGA
* *
91256616 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
91256681 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
91256709 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
91256774 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
91256788 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:91267166 original size:68 final size:67
Alignment explanation
Indices: 91267094--91267243 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
91267084 CATCATGTGT
* * * *
91267094 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
91267156 ATGTAG
62 ATGTAG
** * *
91267162 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
91267227 AG
66 AG
91267229 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
91267244 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:91267199 original size:64 final size:64
Alignment explanation
Indices: 91267118--91267301 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
91267108 AGACATTATG
* *
91267118 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
91267182 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
91267247 AA
63 AA
* * * *
91267249 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
91267302 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:91271614 original size:68 final size:67
Alignment explanation
Indices: 91271542--91271691 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
91271532 CATCATGTGT
* * * *
91271542 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
91271604 ATGTAG
62 ATGTAG
** * *
91271610 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
91271675 AG
66 AG
91271677 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
91271692 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:91271647 original size:64 final size:64
Alignment explanation
Indices: 91271566--91271749 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
91271556 AGACATTATG
* *
91271566 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
91271630 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
91271695 AA
63 AA
* * * *
91271697 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
91271750 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:91273637 original size:28 final size:29
Alignment explanation
Indices: 91273595--91273709 Score: 121
Period size: 28 Copynumber: 4.1 Consensus size: 29
91273585 AGCATGACTG
*
91273595 TAAATGTGATTTGGGCCTAGT-GGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
* *
91273623 TCAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
** *
91273652 TAAATGT-AAATGAGCCTAATGGGCCATA
1 TAAATGTGATTTGGGCCTAATGGGCCATA
* *
91273680 TGAAA-GAGA-TTGGGCCTAGTGGGCCATA
1 T-AAATGTGATTTGGGCCTAATGGGCCATA
91273708 TA
1 TA
91273710 TAGGTATGTT
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
27 1 0.01
28 55 0.76
29 16 0.22
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TAAATGTGATTTGGGCCTAATGGGCCATA
Found at i:91281060 original size:28 final size:28
Alignment explanation
Indices: 91281028--91281083 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
91281018 GGTGAAAGGT
91281028 GAGGTTTCGATTTCGGTAGAGATATGTA
1 GAGGTTTCGATTTCGGTAGAGATATGTA
* *
91281056 GAGGTTTCGATTTTGGTGGAGATATGTA
1 GAGGTTTCGATTTCGGTAGAGATATGTA
91281084 TTAAGCATGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.23, C:0.05, G:0.34, T:0.38
Consensus pattern (28 bp):
GAGGTTTCGATTTCGGTAGAGATATGTA
Found at i:91281221 original size:16 final size:16
Alignment explanation
Indices: 91281197--91281247 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
91281187 GTAGATCGAC
* *
91281197 AAATCCCAAAAAGTCG
1 AAATGCCAAAAAGCCG
*
91281213 AAATGCCAAAAAACCG
1 AAATGCCAAAAAGCCG
91281229 AAATGCCAAAAAGCCG
1 AAATGCCAAAAAGCCG
91281245 AAA
1 AAA
91281248 GTTTGGCTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.55, C:0.24, G:0.14, T:0.08
Consensus pattern (16 bp):
AAATGCCAAAAAGCCG
Done.