Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 264 of 290
Found at i:91281502 original size:28 final size:28
Alignment explanation
Indices: 91281462--91281573 Score: 120
Period size: 28 Copynumber: 4.0 Consensus size: 28
91281452 CATGACTATA
91281462 AATGTGATTTGGGCCTAGT-GGCCATATG
1 AATGTGA-TTGGGCCTAGTGGGCCATATG
* * *
91281490 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGA-TTGGGCCTAGTGGGCCATATG
*
91281519 AATGTGAATGGGCCT-GATGGGCCATATG
1 AATGTGATTGGGCCTAG-TGGGCCATATG
* * *
91281547 AAAGAGATTGGGCCTAGTAGGCCATAT
1 AATGTGATTGGGCCTAGTGGGCCATAT
91281574 ATAAGTATGT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
28 55 0.79
29 15 0.21
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (28 bp):
AATGTGATTGGGCCTAGTGGGCCATATG
Found at i:91281570 original size:56 final size:57
Alignment explanation
Indices: 91281459--91281570 Score: 140
Period size: 57 Copynumber: 2.0 Consensus size: 57
91281449 GAGCATGACT
* * * *
91281459 ATAAATGTGATTTGGGCCTAGTGGCCATATGAATGTGATTTGGGCCTAATGGGCCAC
1 ATAAATGTGATATGGGCCTAGTGGCCATATGAAAGAGATTTGGGCCTAATAGGCCAC
*
91281516 ATAAATGTGA-ATGGGCCT-GATGGGCCATATGAAAGAGA-TTGGGCCTAGTAGGCCA
1 ATAAATGTGATATGGGCCTAG-T-GGCCATATGAAAGAGATTTGGGCCTAATAGGCCA
91281571 TATATAAGTA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
55 1 0.02
56 23 0.48
57 24 0.50
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (57 bp):
ATAAATGTGATATGGGCCTAGTGGCCATATGAAAGAGATTTGGGCCTAATAGGCCAC
Found at i:91286007 original size:40 final size:40
Alignment explanation
Indices: 91285941--91286045 Score: 124
Period size: 40 Copynumber: 2.6 Consensus size: 40
91285931 TGATGACAAA
* *
91285941 TCAGCTATTTGTGGCACTTAGTGTGTGATTCGAC-ATAACT
1 TCAGCTATATATGGCACTTAGTGTGTGATTCG-CGATAACT
* *
91285981 TC-GTCTATATATGGCACTTAGTGTGTGATTTGCGATAGCT
1 TCAG-CTATATATGGCACTTAGTGTGTGATTCGCGATAACT
* *
91286021 TCAGCTATGTATGACACTTAGTGTG
1 TCAGCTATATATGGCACTTAGTGTG
91286046 CGAGATATCG
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
39 2 0.04
40 53 0.95
41 1 0.02
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.38
Consensus pattern (40 bp):
TCAGCTATATATGGCACTTAGTGTGTGATTCGCGATAACT
Found at i:91287589 original size:20 final size:20
Alignment explanation
Indices: 91287564--91287604 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
91287554 CTAGGACTAA
91287564 CGTAGCATTTACGAGTCTAG
1 CGTAGCATTTACGAGTCTAG
91287584 CGTAGCATTTACGAGTCTAG
1 CGTAGCATTTACGAGTCTAG
91287604 C
1 C
91287605 TATACATGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (20 bp):
CGTAGCATTTACGAGTCTAG
Found at i:91293226 original size:135 final size:135
Alignment explanation
Indices: 91292984--91293524 Score: 1046
Period size: 135 Copynumber: 4.0 Consensus size: 135
91292974 TTTTGGTAAG
91292984 TGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGTGAAATGTAAAAACTTTGTGGTTCAAAT
1 TGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGTGAAATGTAAAAACTTTGTGGTTCAAAT
91293049 ATGAAATAAATTGAAAATATGGGCTACTAGGGGCCTTATGGTAATTCGGCTAAGCATGGGTGTTG
66 ATGAAATAAATTGAAAATATGGGCTACTAGGGGCCTTATGGTAATTCGGCTAAGCATGGGTGTTG
91293114 TGAAA
131 TGAAA
91293119 TGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGTGAAATGTAAAAACTTTGTGGTTCAAAT
1 TGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGTGAAATGTAAAAACTTTGTGGTTCAAAT
91293184 ATGAAATAAATTGAAAATATGGGCTACTAGGGGCCTTATGGTAATTCGGCTAAGCATGGGTGTTG
66 ATGAAATAAATTGAAAATATGGGCTACTAGGGGCCTTATGGTAATTCGGCTAAGCATGGGTGTTG
91293249 TGAAA
131 TGAAA
91293254 TGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGTGAAATGTAAAAACTTTGTGGTTCAAAT
1 TGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGTGAAATGTAAAAACTTTGTGGTTCAAAT
91293319 ATGAAATAAATTGAAAATATGGGCTACTAGGGGCCTTATGGTAATTCGGCTAAGCATGGGTGTTG
66 ATGAAATAAATTGAAAATATGGGCTACTAGGGGCCTTATGGTAATTCGGCTAAGCATGGGTGTTG
91293384 TGAAA
131 TGAAA
* *
91293389 TGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGTGAAATGTGAAAACTTTGTGGTTAAAAT
1 TGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGTGAAATGTAAAAACTTTGTGGTTCAAAT
* *
91293454 ATGAAATAAATTGAAAATATGGGCTGCTAAGGGCCTTATGGTAATTCGGCTAAGCATGGGTGTTG
66 ATGAAATAAATTGAAAATATGGGCTACTAGGGGCCTTATGGTAATTCGGCTAAGCATGGGTGTTG
91293519 TGAAA
131 TGAAA
91293524 T
1 T
91293525 TTGCATGAAT
Statistics
Matches: 402, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 402 1.00
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.32
Consensus pattern (135 bp):
TGATTTTTAGTGAAAATGCAAAATAGGGATTAAATTGTGAAATGTAAAAACTTTGTGGTTCAAAT
ATGAAATAAATTGAAAATATGGGCTACTAGGGGCCTTATGGTAATTCGGCTAAGCATGGGTGTTG
TGAAA
Found at i:91293973 original size:40 final size:40
Alignment explanation
Indices: 91293855--91293975 Score: 143
Period size: 40 Copynumber: 3.0 Consensus size: 40
91293845 CGACGACAAA
* * * *
91293855 TCGGCTATTTGTGGCACTTAGTGTGCGATTCAACATAACT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
** * * *
91293895 TCTACTATACATGGCACCTAGTGTGCGATTCGATATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
* *
91293935 TCGGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
91293975 T
1 T
91293976 TGGCATTGTA
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (40 bp):
TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
Found at i:91293993 original size:40 final size:40
Alignment explanation
Indices: 91293869--91294002 Score: 108
Period size: 40 Copynumber: 3.4 Consensus size: 40
91293859 CTATTTGTGG
* * * ** * * *
91293869 CACTTAGTGTGCGATTCAACATAACTTCTACTATACATGG
1 CACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATACGA
* * * *
91293909 CACCTAGTGTGCGATTCGATATAGCTTCGGCTATATATGG
1 CACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATACGA
* * *
91293949 CACTTAGTGTGCGATTTGAGATAGCTTTGGC-ATTGTACGA
1 CACTTAGTGTGCGATTCGAGATAGCTTCGGCTA-TATACGA
*
91293989 CACTTAGTCTGCGA
1 CACTTAGTGTGCGA
91294003 GATATCGAGT
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 77 0.99
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (40 bp):
CACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATACGA
Found at i:91294040 original size:28 final size:28
Alignment explanation
Indices: 91293987--91294042 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
91293977 GGCATTGTAC
*
91293987 GACACTTAGTCTGCGAGATATCGAGTAT
1 GACACTTAGTCTGCGAGACATCGAGTAT
* * *
91294015 GACACTTAGTGTGCTAGACATTGAGTAT
1 GACACTTAGTCTGCGAGACATCGAGTAT
91294043 TCAACAGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (28 bp):
GACACTTAGTCTGCGAGACATCGAGTAT
Found at i:91294583 original size:21 final size:21
Alignment explanation
Indices: 91294557--91294596 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
91294547 TTTATGGTTA
91294557 ATATTATAAGATTTGTGGATT
1 ATATTATAAGATTTGTGGATT
91294578 ATATTATAAGATTTGTGGA
1 ATATTATAAGATTTGTGGA
91294597 ATTGGTGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (21 bp):
ATATTATAAGATTTGTGGATT
Found at i:91297419 original size:28 final size:28
Alignment explanation
Indices: 91297375--91297449 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
91297365 GGGCCCCTTT
*
91297375 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * * *
91297403 GGGCCCAATTACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
91297431 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
91297450 GTCATGAAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:91320275 original size:42 final size:42
Alignment explanation
Indices: 91320223--91320334 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 42
91320213 TGAGATAATG
* * *
91320223 TGTAGGACCATATCTAGGATATGGCATCAATATGAGACTT-CA
1 TGTAAGACCATATCTGGGATATGGCATCAATACGAGA-TTACA
* * *
91320265 TGTAAGACCATAGCTGGGCTATTGGCATCTATACGAGATTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCAATACGAGATTACA
* *
91320308 TGTAAGACTATATCTGGGATATAGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
91320335 TGGTACGGTA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCAATACGAGATTACA
Found at i:91320709 original size:26 final size:24
Alignment explanation
Indices: 91320640--91320711 Score: 94
Period size: 24 Copynumber: 3.0 Consensus size: 24
91320630 AAATAGCGTG
91320640 TTTT-AGCTCAATAGAGCTTACCA
1 TTTTCAGCTCAATAGAGCTTACCA
*
91320663 TTTTCAGCTCAATAGAGCTTACTA
1 TTTTCAGCTCAATAGAGCTTACCA
91320687 TTTGTCAGCTC-ATGAAGAGCTTACC
1 TTT-TCAGCTCAAT--AGAGCTTACC
91320712 GGCCATGTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
23 4 0.09
24 23 0.53
25 7 0.16
26 9 0.21
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (24 bp):
TTTTCAGCTCAATAGAGCTTACCA
Found at i:91322172 original size:40 final size:40
Alignment explanation
Indices: 91322117--91322903 Score: 1574
Period size: 40 Copynumber: 19.7 Consensus size: 40
91322107 NNNNNNNNNN
91322117 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322157 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322197 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322237 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322277 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322317 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322357 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322397 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322437 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322477 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322517 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322557 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322597 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322637 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322677 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322717 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322757 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322797 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322837 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
1 GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
91322877 GCCTTCGGGTCATAGCCCGGATATATT
1 GCCTTCGGGTCATAGCCCGGATATATT
91322904 CCAATGCTCA
Statistics
Matches: 747, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 747 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (40 bp):
GCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAATT
Found at i:91325047 original size:5 final size:5
Alignment explanation
Indices: 91325037--91325068 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
91325027 AAATTTGTGA
91325037 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
91325069 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:91325062 original size:9 final size:9
Alignment explanation
Indices: 91325038--91325068 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
91325028 AATTTGTGAA
91325038 AAATAAAAT
1 AAATAAAAT
91325047 AAAATAAAAT
1 -AAATAAAAT
91325057 AAATAAAAT
1 AAATAAAAT
91325066 AAA
1 AAA
91325069 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:91326667 original size:97 final size:97
Alignment explanation
Indices: 91326566--91326775 Score: 217
Period size: 98 Copynumber: 2.2 Consensus size: 97
91326556 TACAAATTTT
* * * * * *
91326566 AAATATAAATTATTGTCGTCATTTATTCATATGTAGTTCTTAATATTACA-CGATTTTGTGAAGA
1 AAATAAAAATTATTATCGTCATTTATTCATATGCAATTCTTAATATCACAGCG-TTTTGCGAAGA
*
91326630 TCAATCGTATAATTGATTTAATTTTTA-GAGTTC
65 TCAATCGTATAATTGATTTAATTTATAGGA-TTC
* ** * * * * *
91326663 AAATACAAACCATCATCTTCATTTATTCTTTTGCAATTCTTAATATCACATGCGTTTTGCGAATA
1 AAATAAAAATTATTATCGTCATTTATTCATATGCAATTCTTAATATCACA-GCGTTTTGCGAAGA
* * *
91326728 TCAATCTTATAGTTTATTTAATTTATAGGATTC
65 TCAATCGTATAATTGATTTAATTTATAGGATTC
91326761 AAATAAAAATTATTA
1 AAATAAAAATTATTA
91326776 ACAACATGAA
Statistics
Matches: 89, Mismatches: 21, Indels: 5
0.77 0.18 0.04
Matches are distributed among these distances:
97 39 0.44
98 46 0.52
99 4 0.04
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.44
Consensus pattern (97 bp):
AAATAAAAATTATTATCGTCATTTATTCATATGCAATTCTTAATATCACAGCGTTTTGCGAAGAT
CAATCGTATAATTGATTTAATTTATAGGATTC
Found at i:91326762 original size:98 final size:97
Alignment explanation
Indices: 91326584--91326765 Score: 224
Period size: 98 Copynumber: 1.9 Consensus size: 97
91326574 ATTATTGTCG
* * * *
91326584 TCATTTATTCATATGTAGTTCTTAATATTACACGATTTTGTGAAGATCAATCGTATAATTGATTT
1 TCATTTATTCATATGCAATTCTTAATATCACACGATTTTGCGAAGATCAATCGTATAATTGATTT
*
91326649 AATTTTTAGAGTTCAAATACAAACCATCATCT
66 AATTTATAGAGTTCAAATACAAACCATCATCT
* * * * * *
91326681 TCATTTATTCTTTTGCAATTCTTAATATCACATGCG-TTTTGCGAATATCAATCTTATAGTTTAT
1 TCATTTATTCATATGCAATTCTTAATATCACA--CGATTTTGCGAAGATCAATCGTATAATTGAT
91326745 TTAATTTATAG-GATTCAAATA
64 TTAATTTATAGAG-TTCAAATA
91326766 AAAATTATTA
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
97 28 0.39
98 41 0.58
99 2 0.03
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (97 bp):
TCATTTATTCATATGCAATTCTTAATATCACACGATTTTGCGAAGATCAATCGTATAATTGATTT
AATTTATAGAGTTCAAATACAAACCATCATCT
Found at i:91329011 original size:3 final size:3
Alignment explanation
Indices: 91329003--91329028 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
91328993 TCTAAAAAGA
91329003 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
91329029 GTAAGTAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:91329102 original size:20 final size:19
Alignment explanation
Indices: 91329064--91329161 Score: 67
Period size: 20 Copynumber: 4.9 Consensus size: 19
91329054 AAATGATGTA
91329064 ATAATAATATTAAATTAATTAGT
1 ATAATAATA-T-AA-TAA-TAGT
* *
91329087 TTAATAATATAATAATGGT
1 ATAATAATATAATAATAGT
*
91329106 AATAATAATAATAATAATAGA
1 -ATAATAAT-ATAATAATAGT
*
91329127 ATAATAATAGAATAA-A-T
1 ATAATAATATAATAATAGT
91329144 AATAATACAT-TAATAATA
1 -ATAATA-ATATAATAATA
91329162 ATAAATTTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 14
0.74 0.10 0.17
Matches are distributed among these distances:
18 12 0.19
19 12 0.19
20 18 0.29
21 11 0.18
22 1 0.02
23 8 0.13
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (19 bp):
ATAATAATATAATAATAGT
Found at i:91329134 original size:26 final size:27
Alignment explanation
Indices: 91329105--91329165 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
91329095 ATAATAATGG
*
91329105 TAATAATAAT-AATAATAATAGAATAA
1 TAATAATAATAAATAATAATACAATAA
* *
91329131 TAAT-AGAATAAATAATAATACATTAA
1 TAATAATAATAAATAATAATACAATAA
91329157 TAATAATAA
1 TAATAATAA
91329166 ATTTAATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 4 0.14
26 22 0.76
27 3 0.10
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (27 bp):
TAATAATAATAAATAATAATACAATAA
Found at i:91329144 original size:29 final size:29
Alignment explanation
Indices: 91329112--91329177 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
91329102 TGGTAATAAT
91329112 AATAATAATA-ATAGAATAATAATAGAA-TA
1 AATAATAATACAT-GAATAATAATA-AATTA
* *
91329141 AATAATAATACATTAATAATAATAAATTT
1 AATAATAATACATGAATAATAATAAATTA
91329170 AATAATAA
1 AATAATAA
91329178 AGTAGCCAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 2 0.06
29 29 0.88
30 2 0.06
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (29 bp):
AATAATAATACATGAATAATAATAAATTA
Found at i:91329177 original size:3 final size:3
Alignment explanation
Indices: 91329088--91329165 Score: 72
Period size: 3 Copynumber: 26.0 Consensus size: 3
91329078 TTAATTAGTT
** *
91329088 TAA TAA T-A TAA TAA TGG TAA TAA TAA TAA TAA TAA T-A GAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
91329134 T-A GAA TAAA TAA TAA TACA TTAA TAA TAA TAA
1 TAA TAA T-AA TAA TAA TA-A -TAA TAA TAA TAA
91329166 ATTTAATAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
2 4 0.07
3 50 0.82
4 5 0.08
5 2 0.03
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:91329860 original size:23 final size:22
Alignment explanation
Indices: 91329829--91329874 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
91329819 CTTAGTTTTG
*
91329829 AAAAGAAAATAA-AATAAAATAA
1 AAAAGAAAAGAATAA-AAAATAA
91329851 AAAAGGAAAAGAATAAAAAATAA
1 AAAA-GAAAAGAATAAAAAATAA
91329874 A
1 A
91329875 TAAACCTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 15 0.71
24 2 0.10
ACGTcount: A:0.80, C:0.00, G:0.09, T:0.11
Consensus pattern (22 bp):
AAAAGAAAAGAATAAAAAATAA
Found at i:91330747 original size:44 final size:44
Alignment explanation
Indices: 91330689--91331028 Score: 179
Period size: 44 Copynumber: 7.6 Consensus size: 44
91330679 TTTAGTTTGT
* *
91330689 TCCACTGCAACTTCAGGAAGATAAGACTAGTGGCTTCAACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTAGTAGCTTCAACCTGC
* * * * *
91330733 TCCACTGCAACTTCAGGGAGATAAG-GT--TTGCCATGATCC-GC
1 TCCACTGCAACTTCAGGGAGATAAGACTAGTAG-CTTCAACCTGC
* ** * * **
91330774 TCTACTGCAACTTCAGAAAGATAAGATCTATAATTATAGCTTCAATCTAT
1 TCCACTGCAACTTCAGGGAGATAAGA-C--T-A--GTAGCTTCAACCTGC
* * * * *
91330824 TCCATTGAAACTTCAGGGAGATAAGACTTGTAACTTTAACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTAGTAGCTTCAACCTGC
* * **
91330868 TCCACTGCAACTTCAGGGAGATAAGGCTTA-TAGCTTTAATTTGC
1 TCCACTGCAACTTCAGGGAGATAAGAC-TAGTAGCTTCAACCTGC
* * * * ** ** * * *
91330912 TCTACTACAACTTCAGAGAGATAAGATTTTCTATTTTCGATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGA-CTAGTAGCTTCAACCTGC
* * **
91330957 TCCACTGCAACTTCAGGGAGATAAGATCT-GTGGCTTTAATATGC
1 TCCACTGCAACTTCAGGGAGATAAGA-CTAGTAGCTTCAACCTGC
* * *
91331001 TCCATTACAACTTTAGGGAGATAAGACT
1 TCCACTGCAACTTCAGGGAGATAAGACT
91331029 TGCCACAATG
Statistics
Matches: 219, Mismatches: 63, Indels: 29
0.70 0.20 0.09
Matches are distributed among these distances:
41 26 0.12
42 5 0.02
43 3 0.01
44 121 0.55
45 35 0.16
47 1 0.00
49 5 0.02
50 23 0.11
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGACTAGTAGCTTCAACCTGC
Found at i:91330850 original size:135 final size:132
Alignment explanation
Indices: 91330688--91331025 Score: 378
Period size: 133 Copynumber: 2.5 Consensus size: 132
91330678 CTTTAGTTTG
* *
91330688 TTCCACTGCAACTTCAGGAAGATAAGACTAGTGGCTTCAACCTGCTCCACTGCAACTTCAGGGAG
1 TTCCACTGCAACTTCAGGGAGATAAGACT-GTGGCTTTAACCTGCTCCACTGCAACTTCAGGGAG
* *
91330753 ATAAGG-TT-T-GCCATGATCCGCTCTACTGCAACTTCAGAAAGATAAGATCTATAAT-TATAGC
65 ATAAGGCTTATAGCCATAATCCGCTCTACTACAACTTCAGAAAGATAAGAT-T-T--TCTAT--C
91330814 TTCAATCTA
124 TTCAATCTA
* * **
91330823 TTCCATTGAAACTTCAGGGAGATAAGACTTGTAACTTTAACCTGCTCCACTGCAACTTCAGGGAG
1 TTCCACTGCAACTTCAGGGAGATAAGAC-TGTGGCTTTAACCTGCTCCACTGCAACTTCAGGGAG
** ** * * *
91330888 ATAAGGCTTATAGCTTTAATTTGCTCTACTACAACTTCAGAGAGATAAGATTTTCTATTTTCGAT
65 ATAAGGCTTATAGCCATAATCCGCTCTACTACAACTTCAGAAAGATAAGATTTTCTATCTTCAAT
91330953 CTA
130 CTA
* ** * * *
91330956 CTCCACTGCAACTTCAGGGAGATAAGATCTGTGGCTTTAATATGCTCCATTACAACTTTAGGGAG
1 TTCCACTGCAACTTCAGGGAGATAAGA-CTGTGGCTTTAACCTGCTCCACTGCAACTTCAGGGAG
91331021 ATAAG
65 ATAAG
91331026 ACTTGCCACA
Statistics
Matches: 172, Mismatches: 25, Indels: 14
0.82 0.12 0.07
Matches are distributed among these distances:
133 66 0.38
134 2 0.01
135 66 0.38
136 4 0.02
137 2 0.01
138 32 0.19
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (132 bp):
TTCCACTGCAACTTCAGGGAGATAAGACTGTGGCTTTAACCTGCTCCACTGCAACTTCAGGGAGA
TAAGGCTTATAGCCATAATCCGCTCTACTACAACTTCAGAAAGATAAGATTTTCTATCTTCAATC
TA
Found at i:91341739 original size:43 final size:43
Alignment explanation
Indices: 91341674--91341763 Score: 155
Period size: 43 Copynumber: 2.1 Consensus size: 43
91341664 AAGATTGTAA
* *
91341674 CAAA-AATGGATGAAATACAACGAGAGGATCGTACATTTAAAC
1 CAAATAATGGATGAAATACAACGAGAGGATCATAAATTTAAAC
91341716 CAAATAATGGATGAAATACAACGAGAGGATCATAAATTTAAAC
1 CAAATAATGGATGAAATACAACGAGAGGATCATAAATTTAAAC
91341759 CAAAT
1 CAAAT
91341764 TTTCAACTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
42 4 0.09
43 41 0.91
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (43 bp):
CAAATAATGGATGAAATACAACGAGAGGATCATAAATTTAAAC
Found at i:91342822 original size:21 final size:21
Alignment explanation
Indices: 91342770--91342835 Score: 62
Period size: 24 Copynumber: 3.0 Consensus size: 21
91342760 GTAAAATAGT
* *
91342770 ATAAATAATAATAATAATAATA
1 ATAAATGATAATAATATTAA-A
*
91342792 ATGATGATGATAATAATATTAAA
1 AT-A-AATGATAATAATATTAAA
91342815 ATAAATGATAAGTAAT-TTAAA
1 ATAAATGATAA-TAATATTAAA
91342836 GCTTGAAAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
21 12 0.32
22 7 0.19
23 4 0.11
24 14 0.38
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (21 bp):
ATAAATGATAATAATATTAAA
Found at i:91342980 original size:3 final size:3
Alignment explanation
Indices: 91342967--91343041 Score: 66
Period size: 3 Copynumber: 25.0 Consensus size: 3
91342957 TTAATTAGTT
* * *
91342967 TAA TAA T-A TAA TAA TGA TAA TAA TAA T-A CAA TAA TAA T-A GAA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
*
91343013 GAA TAA TAA TACA TTAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A -TAA TAA TAA TAA TAA
91343042 ATTTAATAAG
Statistics
Matches: 58, Mismatches: 8, Indels: 12
0.74 0.10 0.15
Matches are distributed among these distances:
2 4 0.07
3 48 0.83
4 4 0.07
5 2 0.03
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:91343018 original size:29 final size:30
Alignment explanation
Indices: 91342967--91343034 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
91342957 TTAATTAGTT
* *
91342967 TAATAATATAATAATGATAATAATAATACAA
1 TAATAATAGAATAA-GAGAATAATAATACAA
*
91342998 TAATAATAGAATAA-AGAATAATAATACAT
1 TAATAATAGAATAAGAGAATAATAATACAA
91343027 TAATAATA
1 TAATAATA
91343035 ATAATAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 21 0.62
31 13 0.38
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (30 bp):
TAATAATAGAATAAGAGAATAATAATACAA
Found at i:91343049 original size:18 final size:17
Alignment explanation
Indices: 91342941--91343050 Score: 75
Period size: 17 Copynumber: 6.4 Consensus size: 17
91342931 AAAAATGATG
*
91342941 TAATAATAATATTAAAT
1 TAATAATAATAATAAAT
*
91342958 TAATTAGTTTAATAATATAA-
1 TAA-TA--ATAATAATA-AAT
*
91342978 TAATGATAATAAT-AA-
1 TAATAATAATAATAAAT
*
91342993 T-ACAATAATAATAGAAT
1 TAATAATAATAATA-AAT
* * *
91343010 AAAGAATAATAATACAT
1 TAATAATAATAATAAAT
91343027 TAATAATAATAATAAATT
1 TAATAATAATAATAAA-T
91343045 TAATAA
1 TAATAA
91343051 GAAAGTAGAT
Statistics
Matches: 72, Mismatches: 12, Indels: 17
0.71 0.12 0.17
Matches are distributed among these distances:
14 9 0.12
15 3 0.04
16 2 0.03
17 25 0.35
18 20 0.28
19 1 0.01
20 10 0.14
21 2 0.03
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (17 bp):
TAATAATAATAATAAAT
Found at i:91343070 original size:213 final size:210
Alignment explanation
Indices: 91342845--91343270 Score: 766
Period size: 213 Copynumber: 2.0 Consensus size: 210
91342835 AGCTTGAAAG
*
91342845 GATGTGAGTAAATAAATAATTTGATAATAAAAATGCCTAAAAAGAAATAAGAATAATAATAAGTA
1 GATGTGAGTAAATAAATAATATGATAATAAAAATGCCTAAAAAGAAATAAGAATAATAATAAGTA
91342910 AGTAAGCACAAAAAGAAGAA-AAAAAATGATGTAATAATAATATTAAATTAATTAGTTTAATAAT
66 AGTAAGCACAAAAAGAAGAAGAAAAAATGATGTAATAATAATATTAAATTAATTAGTTTAATAAT
91342974 ATAATAATGATAATAATAATAC-AATAATAATAGAATAAAGAATAATAATACATTAATAATAATA
131 ATAATAATGATAATAATAATACAAATAATAATAGAATAAAG---AATAATA-A-TAATAATAATA
91343038 ATAAATTTAATAAGAAAGTA
191 ATAAATTTAATAAGAAAGTA
91343058 GATGTGAGTAAATAAATAATATGATAATAAAAATGCCTAAAAAGAAATAAGAATAATAATAAGTA
1 GATGTGAGTAAATAAATAATATGATAATAAAAATGCCTAAAAAGAAATAAGAATAATAATAAGTA
91343123 AGTAAGCACAAAAAGAAGAAGAAAAAATGATGTAATAATAATATTAAATTAATTAGTTTAATAAT
66 AGTAAGCACAAAAAGAAGAAGAAAAAATGATGTAATAATAATATTAAATTAATTAGTTTAATAAT
91343188 ATAATAATGATAATAATAATACAATAATAATAATAGAATAAAGAATAATAATAATAATAATAATA
131 ATAATAATGATAATAATAATAC-A-AATAATAATAGAATAAAGAATAATAATAATAATAATAATA
91343253 AATTTAATAAGAAAGTA
194 AATTTAATAAGAAAGTA
91343270 G
1 G
91343271 CCAAAATAAC
Statistics
Matches: 208, Mismatches: 1, Indels: 9
0.95 0.00 0.04
Matches are distributed among these distances:
212 32 0.15
213 85 0.41
214 73 0.35
217 18 0.09
ACGTcount: A:0.59, C:0.03, G:0.10, T:0.28
Consensus pattern (210 bp):
GATGTGAGTAAATAAATAATATGATAATAAAAATGCCTAAAAAGAAATAAGAATAATAATAAGTA
AGTAAGCACAAAAAGAAGAAGAAAAAATGATGTAATAATAATATTAAATTAATTAGTTTAATAAT
ATAATAATGATAATAATAATACAAATAATAATAGAATAAAGAATAATAATAATAATAATAATAAA
TTTAATAAGAAAGTA
Found at i:91343194 original size:3 final size:3
Alignment explanation
Indices: 91343181--91343253 Score: 80
Period size: 3 Copynumber: 25.0 Consensus size: 3
91343171 TTAATTAGTT
* * *
91343181 TAA TAA T-A TAA TAA TGA TAA TAA TAA T-A CAA TAA TAA TAA T-A GAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
91343226 TAAA GAA TAA TAA TAA TAA TAA TAA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA
91343254 ATTTAATAAG
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
2 4 0.07
3 52 0.90
4 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:91344798 original size:26 final size:26
Alignment explanation
Indices: 91344769--91344818 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
91344759 TGAGTTGTCT
* *
91344769 AAAATCACATATATGGTTATGAATCC
1 AAAATCAAATATATAGTTATGAATCC
*
91344795 AAAATCAAATATTTAGTTATGAAT
1 AAAATCAAATATATAGTTATGAAT
91344819 ATGTCCAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (26 bp):
AAAATCAAATATATAGTTATGAATCC
Found at i:91344959 original size:36 final size:38
Alignment explanation
Indices: 91344912--91344987 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 38
91344902 ATTTTTATTG
91344912 TTTTGAAGGAG-T-ATTTGTACTATATATTAGTTTGTA
1 TTTTGAAGGAGTTAATTTGTACTATATATTAGTTTGTA
*
91344948 TTTTGAAGGAGTTAATTTGTACTATATATTAGTTTTTA
1 TTTTGAAGGAGTTAATTTGTACTATATATTAGTTTGTA
91344986 TT
1 TT
91344988 CCCGTGTGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
36 11 0.30
37 1 0.03
38 25 0.68
ACGTcount: A:0.28, C:0.03, G:0.17, T:0.53
Consensus pattern (38 bp):
TTTTGAAGGAGTTAATTTGTACTATATATTAGTTTGTA
Found at i:91348940 original size:40 final size:39
Alignment explanation
Indices: 91348909--91349118 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
91348899 GGACTAAGAT
* *
91348909 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
91348949 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
91348989 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
91349029 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
91349069 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
91349108 CCGAAGGCATT
1 CCGAAGGCATT
91349119 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:91349072 original size:120 final size:120
Alignment explanation
Indices: 91348856--91349118 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
91348846 TTGAATGCTG
* *
91348856 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
91348920 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
91348976 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
91349039 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
91349095 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
91349119 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:91349138 original size:79 final size:80
Alignment explanation
Indices: 91348857--91349153 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
91348847 TGAATGCTGT
* ** * * * **
91348857 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
91348920 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
91348937 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
91349001 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
91349017 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
91349081 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
91349096 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
91349154 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:91356880 original size:40 final size:40
Alignment explanation
Indices: 91356836--91357059 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
91356826 AAGTGAATAT
* * * * **
91356836 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
91356876 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
91356916 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
91356956 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
91356996 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
91357035 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
91357060 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:91356934 original size:80 final size:80
Alignment explanation
Indices: 91356797--91357059 Score: 318
Period size: 80 Copynumber: 3.3 Consensus size: 80
91356787 TTGAATGCTG
* * * * *
91356797 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
91356859 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
91356877 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
91356942 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * *
91356957 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
91357021 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
91357036 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
91357060 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.22
80 116 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:91357011 original size:120 final size:120
Alignment explanation
Indices: 91356797--91357059 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
91356787 TTGAATGCTG
* * *
91356797 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* **
91356861 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * *
91356917 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* ** * *
91356979 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
91357036 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
91357060 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.28
120 80 0.66
121 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:91359705 original size:14 final size:15
Alignment explanation
Indices: 91359686--91359720 Score: 54
Period size: 14 Copynumber: 2.3 Consensus size: 15
91359676 TTAAGTAAAA
91359686 TATTTAAAAT-AATT
1 TATTTAAAATAAATT
91359700 TATTTAAAATCAAATT
1 TATTTAAAAT-AAATT
91359716 TATTT
1 TATTT
91359721 TTATTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 10 0.53
16 9 0.47
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (15 bp):
TATTTAAAATAAATT
Found at i:91361166 original size:20 final size:21
Alignment explanation
Indices: 91361124--91361167 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
91361114 CGTCAATTTC
* * *
91361124 TTTTTCCCTTCTTTTTTTGTT
1 TTTTTCCCATCTTTCTTTCTT
91361145 TTTTTCCCAT-TTTCTTTCTT
1 TTTTTCCCATCTTTCTTTCTT
91361165 TTT
1 TTT
91361168 CCTCCTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.75
Consensus pattern (21 bp):
TTTTTCCCATCTTTCTTTCTT
Found at i:91361177 original size:20 final size:20
Alignment explanation
Indices: 91361120--91361178 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
91361110 TTAACGTCAA
*
91361120 TTTCTTTTTCCCTTCTTTTT-
1 TTTCTTTTT-CCTCCTTTTTC
* *
91361140 TTGT-TTTTTTC-CCATTTTC
1 TT-TCTTTTTCCTCCTTTTTC
91361159 TTTCTTTTTCCTCCTTTTTC
1 TTTCTTTTTCCTCCTTTTTC
91361179 ATTTTTTCTG
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
18 6 0.20
19 9 0.30
20 14 0.47
21 1 0.03
ACGTcount: A:0.02, C:0.25, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTCTTTTTCCTCCTTTTTC
Found at i:91361909 original size:29 final size:29
Alignment explanation
Indices: 91361873--91361934 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
91361863 TGGCCAGGCC
91361873 GTGTGAGTCACATGGGCAAGGACATGGCA
1 GTGTGAGTCACATGGGCAAGGACATGGCA
*
91361902 GTGTGAGTCACATGGGCAAGGACATGGCC
1 GTGTGAGTCACATGGGCAAGGACATGGCA
91361931 GTGT
1 GTGT
91361935 CCTTGCCATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.24, C:0.18, G:0.39, T:0.19
Consensus pattern (29 bp):
GTGTGAGTCACATGGGCAAGGACATGGCA
Found at i:91363612 original size:15 final size:15
Alignment explanation
Indices: 91363592--91363626 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
91363582 TTAATTAATT
*
91363592 TTTTTTAATGTTCAA
1 TTTTTTAATATTCAA
*
91363607 TTTTTTAATATTCGA
1 TTTTTTAATATTCAA
91363622 TTTTT
1 TTTTT
91363627 CTTTTGCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.66
Consensus pattern (15 bp):
TTTTTTAATATTCAA
Found at i:91366987 original size:35 final size:35
Alignment explanation
Indices: 91366942--91367011 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
91366932 TTTCACTAAG
91366942 TAAAAGACTCTAAAATCACTTAATTTGGTTTCCAA
1 TAAAAGACTCTAAAATCACTTAATTTGGTTTCCAA
* *
91366977 TAAACGACTCTGAAATCACTTAATTTGGTTTCCAA
1 TAAAAGACTCTAAAATCACTTAATTTGGTTTCCAA
91367012 ACTCATGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (35 bp):
TAAAAGACTCTAAAATCACTTAATTTGGTTTCCAA
Found at i:91372618 original size:13 final size:13
Alignment explanation
Indices: 91372602--91372627 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91372592 TTGGCCACTT
91372602 GAATTGGAAAATA
1 GAATTGGAAAATA
91372615 GAATTGGAAAATA
1 GAATTGGAAAATA
91372628 AAGCTCACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (13 bp):
GAATTGGAAAATA
Found at i:91373673 original size:17 final size:17
Alignment explanation
Indices: 91373651--91373686 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
91373641 AACCCTCTTT
91373651 ATTGTTGCCGCAAGTCC
1 ATTGTTGCCGCAAGTCC
91373668 ATTGTTGCCGCAAGTCC
1 ATTGTTGCCGCAAGTCC
91373685 AT
1 AT
91373687 CTTGTAGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (17 bp):
ATTGTTGCCGCAAGTCC
Found at i:91388114 original size:6 final size:6
Alignment explanation
Indices: 91388103--91388169 Score: 57
Period size: 6 Copynumber: 10.8 Consensus size: 6
91388093 CCCCTGAAAG
** *
91388103 AAATAA AAATAA AAATAA AAATAA AAA-CC AAATAA AAATCAGTA AAAT-T
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAAT-A--A AAATAA
91388152 AAATAAA AAATAA AAATA
1 AAAT-AA AAATAA AAATA
91388170 TGTTAGTTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
5 7 0.14
6 32 0.65
7 5 0.10
9 5 0.10
ACGTcount: A:0.76, C:0.04, G:0.01, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:91394268 original size:391 final size:392
Alignment explanation
Indices: 91393547--91394749 Score: 1934
Period size: 391 Copynumber: 3.0 Consensus size: 392
91393537 GTATGATGAA
91393547 TTCCTCGAACTGGAGTTCTGGAGAGGAATCGGTTCGAGAGTGGAGGGGGATACTCCGACAGTCAT
1 TTCCTCGAACTGGAGTTCTGGAGAGGAATCGGTTCGAGAGTGGAGGGGGATACTCCGACAGTCAT
91393612 AGAGGTTCATTAGGCCATAAGTCCTACGCCAAAAGGATATTATCTCTAGTGGTAGCTATGGTCGT
66 AGAGGTTCATTAGGCCATAAGTCCTACGCCAAAAGGATATTATCTCTAGTGGTAGCTATGGTCGT
91393677 GGGCGAGCAGGACATGGCAGTCGTGGAGAACCTTTCTCTGTGGAGTTGTAATTCCTATGCAATGA
131 GGGCGAGCAGGACATGGCAGTCGTGGAGAACCTTTCTCTGTGGAGTTGTAATTCCTATGCAATGA
91393742 TGAGCTTAAAAGCTCTATATAATTGTGATAAAATCAAGAACTTTTTAGGGGATATTAGGAAGAAT
196 TGAGCTTAAAAGCTCTATATAATTGTGATAAAATCAAGAACTTTTTAGGGGATATTAGGAAGAAT
91393807 AATTACTCATAAAGAAAAACTGAAATTGATAATTAAAAATAAAATTCTAAAATCTACTAAAAATA
261 AATTACTCATAAAGAAAAACTGAAATTGATAATTAAAAATAAAATTCTAAAATCTACTAAAAATA
91393872 AATAAAAATAAAAAATAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAACGTTTTTAAA
326 AATAAAAATAAAAAATAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAACGTTTTTAAA
91393937 T-
391 TC
91393938 TTCCTCGAACTGGAGTTCTGGAGAGGAATCGGTTCGAGAGTGGAGGGGGATACTCCGACAGTCAT
1 TTCCTCGAACTGGAGTTCTGGAGAGGAATCGGTTCGAGAGTGGAGGGGGATACTCCGACAGTCAT
91394003 AGAGGTTCATTAGGCCATAAGTCCTACGCCAAAAGGATATTATCTCTAGTGGTAGCTATGGTCGT
66 AGAGGTTCATTAGGCCATAAGTCCTACGCCAAAAGGATATTATCTCTAGTGGTAGCTATGGTCGT
91394068 GGGCGAGCAGGACATGGCAGTCGTGGAGAACCTTTCTCTGTGGAGTTGTAATTCCTATGCAATGA
131 GGGCGAGCAGGACATGGCAGTCGTGGAGAACCTTTCTCTGTGGAGTTGTAATTCCTATGCAATGA
91394133 TGAGCTTAAAAGCTCTATATAATTGTGATAAAATCAAGAACTTTTTAGGGGATATTAGGAAGAAT
196 TGAGCTTAAAAGCTCTATATAATTGTGATAAAATCAAGAACTTTTTAGGGGATATTAGGAAGAAT
91394198 AATTACTCATAAAGAAAAACTGAAATTGATAATTAAAAATAAAATTCTAAAATCTACTAAAAATA
261 AATTACTCATAAAGAAAAACTGAAATTGATAATTAAAAATAAAATTCTAAAATCTACTAAAAATA
*
91394263 AATAAAAATAAAAAATAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAACGTTTCTAAA
326 AATAAAAATAAAAAATAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAACGTTT-TTAA
91394328 CATC
390 -ATC
* * * * * * *
91394332 TTCATCG--CTGGATGGTTC-GTGAGGTGGGA-CTGG--CGATGAGATGTAGATGTGCTAACAAA
1 TTCCTCGAACTGGA--GTTCTG-GA-GAGGAATC-GGTTCGA-GAG-TGGAG-GGGGAT-AC---
**
91394391 TCTGCTGTAGAGTAGCATCAATGTTGTCAAATTTAGAGGTTCATTAGGCCATAAGTCCTGTGCCA
54 TC--C---------G-A-C-A----GTC--A--TAGAGGTTCATTAGGCCATAAGTCCTACGCCA
91394456 AAAGGATATTATCTCTAGTGGTAGCTATGGTCGTGGGCGAGCAGGACATGGCAGTCGTGGAGAAC
97 AAAGGATATTATCTCTAGTGGTAGCTATGGTCGTGGGCGAGCAGGACATGGCAGTCGTGGAGAAC
91394521 CTTTCTCTGTGGAGTTGTAATTCCTATGCAATGATGAGCTTAAAAGCTCTATATAATTGTGATAA
162 CTTTCTCTGTGGAGTTGTAATTCCTATGCAATGATGAGCTTAAAAGCTCTATATAATTGTGATAA
91394586 AATCAAGAACTTTTTAGGGGATATTAGGAAGAATAATTACTCATAAAGAAAAACTGAAATTGATA
227 AATCAAGAACTTTTTAGGGGATATTAGGAAGAATAATTACTCATAAAGAAAAACTGAAATTGATA
91394651 ATTAAAAATAAAATTCTAAAATCTACTAAAAATAAATAAAAATAAAAAATAGTTTTAATAAAAAT
292 ATTAAAAATAAAATTCTAAAATCTACTAAAAATAAATAAAAATAAAAAATAGTTTTAATAAAAAT
*
91394716 TAAAAACATAAAATAATAAATAAACGTTTCTAAA
357 TAAAAACATAAAATAATAAATAAACGTTTTTAAA
91394750 CATCTTCATC
Statistics
Matches: 763, Mismatches: 12, Indels: 45
0.93 0.01 0.05
Matches are distributed among these distances:
391 385 0.50
392 8 0.01
393 6 0.01
394 16 0.02
395 10 0.01
396 3 0.00
397 2 0.00
400 2 0.00
402 1 0.00
411 1 0.00
412 1 0.00
413 1 0.00
414 1 0.00
418 3 0.00
420 2 0.00
421 2 0.00
422 319 0.42
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (392 bp):
TTCCTCGAACTGGAGTTCTGGAGAGGAATCGGTTCGAGAGTGGAGGGGGATACTCCGACAGTCAT
AGAGGTTCATTAGGCCATAAGTCCTACGCCAAAAGGATATTATCTCTAGTGGTAGCTATGGTCGT
GGGCGAGCAGGACATGGCAGTCGTGGAGAACCTTTCTCTGTGGAGTTGTAATTCCTATGCAATGA
TGAGCTTAAAAGCTCTATATAATTGTGATAAAATCAAGAACTTTTTAGGGGATATTAGGAAGAAT
AATTACTCATAAAGAAAAACTGAAATTGATAATTAAAAATAAAATTCTAAAATCTACTAAAAATA
AATAAAAATAAAAAATAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAACGTTTTTAAA
TC
Found at i:91394786 original size:422 final size:422
Alignment explanation
Indices: 91394002--91394846 Score: 1672
Period size: 422 Copynumber: 2.0 Consensus size: 422
91393992 CCGACAGTCA
91394002 TAGAGGTTCATTAGGCCATAAGTCCTACGCCAAAAGGATATTATCTCTAGTGGTAGCTATGGTCG
1 TAGAGGTTCATTAGGCCATAAGTCCTACGCCAAAAGGATATTATCTCTAGTGGTAGCTATGGTCG
91394067 TGGGCGAGCAGGACATGGCAGTCGTGGAGAACCTTTCTCTGTGGAGTTGTAATTCCTATGCAATG
66 TGGGCGAGCAGGACATGGCAGTCGTGGAGAACCTTTCTCTGTGGAGTTGTAATTCCTATGCAATG
91394132 ATGAGCTTAAAAGCTCTATATAATTGTGATAAAATCAAGAACTTTTTAGGGGATATTAGGAAGAA
131 ATGAGCTTAAAAGCTCTATATAATTGTGATAAAATCAAGAACTTTTTAGGGGATATTAGGAAGAA
91394197 TAATTACTCATAAAGAAAAACTGAAATTGATAATTAAAAATAAAATTCTAAAATCTACTAAAAAT
196 TAATTACTCATAAAGAAAAACTGAAATTGATAATTAAAAATAAAATTCTAAAATCTACTAAAAAT
91394262 AAATAAAAATAAAAAATAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAACGTTTCTAA
261 AAATAAAAATAAAAAATAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAACGTTTCTAA
91394327 ACATCTTCATCGCTGGATGGTTCGTGAGGTGGGACTGGCGATGAGATGTAGATGTGCTAACAAAT
326 ACATCTTCATCGCTGGATGGTTCGTGAGGTGGGACTGGCGATGAGATGTAGATGTGCTAACAAAT
91394392 CTGCTGTAGAGTAGCATCAATGTTGTCAAATT
391 CTGCTGTAGAGTAGCATCAATGTTGTCAAATT
**
91394424 TAGAGGTTCATTAGGCCATAAGTCCTGTGCCAAAAGGATATTATCTCTAGTGGTAGCTATGGTCG
1 TAGAGGTTCATTAGGCCATAAGTCCTACGCCAAAAGGATATTATCTCTAGTGGTAGCTATGGTCG
91394489 TGGGCGAGCAGGACATGGCAGTCGTGGAGAACCTTTCTCTGTGGAGTTGTAATTCCTATGCAATG
66 TGGGCGAGCAGGACATGGCAGTCGTGGAGAACCTTTCTCTGTGGAGTTGTAATTCCTATGCAATG
91394554 ATGAGCTTAAAAGCTCTATATAATTGTGATAAAATCAAGAACTTTTTAGGGGATATTAGGAAGAA
131 ATGAGCTTAAAAGCTCTATATAATTGTGATAAAATCAAGAACTTTTTAGGGGATATTAGGAAGAA
91394619 TAATTACTCATAAAGAAAAACTGAAATTGATAATTAAAAATAAAATTCTAAAATCTACTAAAAAT
196 TAATTACTCATAAAGAAAAACTGAAATTGATAATTAAAAATAAAATTCTAAAATCTACTAAAAAT
91394684 AAATAAAAATAAAAAATAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAACGTTTCTAA
261 AAATAAAAATAAAAAATAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAACGTTTCTAA
91394749 ACATCTTCATCGCTGGATGGTTCGTGAGGTGGGACTGGCGATGAGATGTAGATGTGCTAACAAAT
326 ACATCTTCATCGCTGGATGGTTCGTGAGGTGGGACTGGCGATGAGATGTAGATGTGCTAACAAAT
91394814 CTGCTGTAGAGTAGCATCAATGTTGTCAAATT
391 CTGCTGTAGAGTAGCATCAATGTTGTCAAATT
91394846 T
1 T
91394847 TTGAAAACAC
Statistics
Matches: 421, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
422 421 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.29
Consensus pattern (422 bp):
TAGAGGTTCATTAGGCCATAAGTCCTACGCCAAAAGGATATTATCTCTAGTGGTAGCTATGGTCG
TGGGCGAGCAGGACATGGCAGTCGTGGAGAACCTTTCTCTGTGGAGTTGTAATTCCTATGCAATG
ATGAGCTTAAAAGCTCTATATAATTGTGATAAAATCAAGAACTTTTTAGGGGATATTAGGAAGAA
TAATTACTCATAAAGAAAAACTGAAATTGATAATTAAAAATAAAATTCTAAAATCTACTAAAAAT
AAATAAAAATAAAAAATAGTTTTAATAAAAATTAAAAACATAAAATAATAAATAAACGTTTCTAA
ACATCTTCATCGCTGGATGGTTCGTGAGGTGGGACTGGCGATGAGATGTAGATGTGCTAACAAAT
CTGCTGTAGAGTAGCATCAATGTTGTCAAATT
Found at i:91412576 original size:12 final size:11
Alignment explanation
Indices: 91412552--91412593 Score: 52
Period size: 10 Copynumber: 3.9 Consensus size: 11
91412542 GAAACCCTAA
91412552 TTTCTCCTTTC
1 TTTCTCCTTTC
91412563 TTTCTCCATTTC
1 TTTCTCC-TTTC
*
91412575 TTT-TTCTTTC
1 TTTCTCCTTTC
91412585 TTTC-CCTTT
1 TTTCTCCTTT
91412594 TTGTTTTCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 11 0.41
11 9 0.33
12 7 0.26
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTCTCCTTTC
Found at i:91412585 original size:22 final size:22
Alignment explanation
Indices: 91412558--91412625 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
91412548 CTAATTTCTC
91412558 CTTTCTTTCTCCATTTCTTTTT
1 CTTTCTTTCTCCATTTCTTTTT
*
91412580 CTTTCTTTC-CC-TTTTTGTTTT
1 CTTTCTTTCTCCATTTCT-TTTT
* *
91412601 CGTTTCTATCTCTATTTCTTTTT
1 C-TTTCTTTCTCCATTTCTTTTT
91412624 CT
1 CT
91412626 ATTTCTTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 4 0.11
21 7 0.18
22 17 0.45
23 6 0.16
24 4 0.11
ACGTcount: A:0.04, C:0.25, G:0.03, T:0.68
Consensus pattern (22 bp):
CTTTCTTTCTCCATTTCTTTTT
Found at i:91424591 original size:52 final size:52
Alignment explanation
Indices: 91424476--91424653 Score: 224
Period size: 52 Copynumber: 3.5 Consensus size: 52
91424466 CGGATACCCG
* * * *
91424476 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAA-GC-TACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAAGGCAT-CTTTCTTCACAAA
*
91424527 GTGGCCTTCACATAGTACCACCCTTGTGACCAAAGGCATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGGCATCTTTCTTCACAAA
* *
91424579 GTGGCCTTCACATAGTACCACACTTGTGACC-AAGCCAT-TTT-TTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGGCATCTTTCTTCACAAA
*
91424628 TTGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
91424654 AGTCACTAAT
Statistics
Matches: 117, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
49 32 0.27
50 3 0.03
51 36 0.31
52 45 0.38
53 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.28
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGGCATCTTTCTTCACAAA
Found at i:91424651 original size:49 final size:49
Alignment explanation
Indices: 91424476--91424653 Score: 212
Period size: 51 Copynumber: 3.5 Consensus size: 49
91424466 CGGATACCCG
* * * * * * *
91424476 GTGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GACCAAGCCA-TTTTTTCACAAA
* *
91424527 GTGGCCTTCACATAGTACCACCCTTGTGACCAAAGGCATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACC-AAGCCAT-TTT-TTCACAAA
*
91424579 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCCATTTTTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAGCCATTTTTTCACAAA
*
91424628 TTGGCCTTCACATAGTACCACACTTG
1 GTGGCCTTCACATAGTACCACACTTG
91424654 AGTCACTAAT
Statistics
Matches: 113, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
49 32 0.28
50 5 0.04
51 38 0.34
52 38 0.34
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.28
Consensus pattern (49 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAGCCATTTTTTCACAAA
Found at i:91430934 original size:34 final size:35
Alignment explanation
Indices: 91430888--91430954 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
91430878 TGCACAGTCA
* *
91430888 AACAGTCTTGGGCCTAAGCCCCTTTCAGTATTAAT
1 AACAGTCTTGGGCCTAAGCCCATCTCAGTATTAAT
*
91430923 AACAGT-TTGGGCCTTAGCCCATCTCAGTATTA
1 AACAGTCTTGGGCCTAAGCCCATCTCAGTATTA
91430955 GTATCAATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 23 0.79
35 6 0.21
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (35 bp):
AACAGTCTTGGGCCTAAGCCCATCTCAGTATTAAT
Found at i:91445702 original size:36 final size:37
Alignment explanation
Indices: 91445649--91445727 Score: 92
Period size: 38 Copynumber: 2.1 Consensus size: 37
91445639 TTTGACTTGA
* *
91445649 ATTTAAATTAAATAATAA-AAGA-ATTTATGTTTATAT
1 ATTTTAATTAAATAATAATAA-ATATTTATATTTATAT
91445685 ATTTTAATTATAA-AATAATTAAATATTTATATTTATAT
1 ATTTTAATTA-AATAATAA-TAAATATTTATATTTATAT
91445723 ATTTT
1 ATTTT
91445728 TTAAAACCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
36 14 0.38
37 3 0.08
38 20 0.54
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.51
Consensus pattern (37 bp):
ATTTTAATTAAATAATAATAAATATTTATATTTATAT
Found at i:91451177 original size:10 final size:9
Alignment explanation
Indices: 91451153--91451188 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
91451143 GCCATAAAAC
91451153 TAATAATT-
1 TAATAATTA
91451161 TAATAATTA
1 TAATAATTA
91451170 TAAATAATTA
1 T-AATAATTA
91451180 TAATAATTA
1 TAATAATTA
91451189 ACTAAAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.31
9 9 0.35
10 9 0.35
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
TAATAATTA
Found at i:91454615 original size:44 final size:43
Alignment explanation
Indices: 91454374--91454750 Score: 129
Period size: 44 Copynumber: 8.6 Consensus size: 43
91454364 TTTCAGTCTA
*** * *
91454374 CTCCACTACTGCTTAGGGAGACGTGATCTA-TAATCTTCGACCTG
1 CTCCACTACTGCTTAGGGAGATAAGAT-TACT-GTCTTCGATCTG
* * * * * **
91454418 CTCCACTATTGCTCAGGAAGATAAGGCTCACCATCTTCGATCTG
1 CTCCACTACTGCTTAGGGAGATAA-GATTACTGTCTTCGATCTG
* *
91454462 CTCCACTACTGCTTAGGGAGATAAG-TT-CTGCAACTTC-AGTCTA
1 CTCCACTACTGCTTAGGGAGATAAGATTACTG--TCTTCGA-TCTG
* * * * * * ** *
91454505 TTCCACTACTACTTAAGGAGATAAGGTTAGTGGC-TAAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATTACTGTCTTCGATCTG
* * * * *
91454547 CTCCATTGCCGCTACATGGAGATAAGATTCACTGTCTTCGATCTG
1 CTCCACTACTGCT-TAGGGAGATAAGATT-ACTGTCTTCGATCTG
* * * ** * *
91454592 CTCCACTACTACTTAGGGAGATAA-AAT-CTGTAATTTTTAGCCCG
1 CTCCACTACTGCTTAGGGAGATAAGATTACTGT--CTTCGA-TCTG
* ** * * **
91454636 TTCCACTACTGCTTAGGGAGATAAGGGTAGTGGCTTAAATCTG
1 CTCCACTACTGCTTAGGGAGATAAGATTACTGTCTTCGATCTG
* * * * * * *
91454679 CTCCATTGCCGCTACATGGAGATAAGATTCACCGTCTTCAATCTG
1 CTCCACTACTGCT-TAGGGAGATAAGATT-ACTGTCTTCGATCTG
* *
91454724 CTCCACTACTACTTAGGAAGATAAGAT
1 CTCCACTACTGCTTAGGGAGATAAGAT
91454751 ATGCAATTTT
Statistics
Matches: 236, Mismatches: 79, Indels: 36
0.67 0.23 0.10
Matches are distributed among these distances:
41 5 0.02
42 15 0.06
43 60 0.25
44 115 0.49
45 39 0.17
46 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (43 bp):
CTCCACTACTGCTTAGGGAGATAAGATTACTGTCTTCGATCTG
Found at i:91454705 original size:132 final size:131
Alignment explanation
Indices: 91454436--91454798 Score: 512
Period size: 132 Copynumber: 2.8 Consensus size: 131
91454426 TTGCTCAGGA
** * * * *
91454436 AGATAAGGCTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGTTCTGCAA-CTTCA
1 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTTTCA
* * * * *
91454500 GTCTATTCCACTACTACTTAAGGAGATAAGGTTAGTGGCTAAATCTACTCCATTGCCGCTACATG
66 GCCTGTTCCACTACTGCTTAGGGAGATAAGGATAGTGGCTAAATCTACTCCATTGCCGCTACATG
91454565 G
131 G
* * * *
91454566 AGATAAGATTCACTGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAAATCTGTAATTTTTA
1 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTTTCA
* * *
91454631 GCCCGTTCCACTACTGCTTAGGGAGATAAGGGTAGTGGCTTAAATCTGCTCCATTGCCGCTACAT
66 GCCTGTTCCACTACTGCTTAGGGAGATAAGGATAGTGGC-TAAATCTACTCCATTGCCGCTACAT
91454696 GG
130 GG
* * *
91454698 AGATAAGATTCACCGTCTTCAATCTGCTCCACTACTACTTAGGAAGATAAGATATGCAATTTTCA
1 AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTTTCA
*
91454763 GCCTGTTCCACTACTGCTTAGGGGGATAAGGATAGT
66 GCCTGTTCCACTACTGCTTAGGGAGATAAGGATAGT
91454799 CGAAATTTGT
Statistics
Matches: 204, Mismatches: 27, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
130 51 0.25
131 36 0.18
132 117 0.57
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (131 bp):
AGATAAGATTCACCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTTTCA
GCCTGTTCCACTACTGCTTAGGGAGATAAGGATAGTGGCTAAATCTACTCCATTGCCGCTACATG
G
Found at i:91459417 original size:55 final size:55
Alignment explanation
Indices: 91459312--91459448 Score: 161
Period size: 55 Copynumber: 2.5 Consensus size: 55
91459302 TGGCCGGGGG
* * * *
91459312 CGAACCTGCCAAAATAACACGGGCGTGCGACATGCTCATGCATTGAAACCGTGGC
1 CGAACCTGTCAAATTAACACGGGCGTGCGACATGCCCATGCATAGAAACCGTGGC
* * * *
91459367 CGAACCTATCAAATTAACACGGGCGTGCGACATGCCCGTGCCA-AGCAACCGTGGG
1 CGAACCTGTCAAATTAACACGGGCGTGCGACATGCCCATG-CATAGAAACCGTGGC
*
91459422 C-AGACCTGTCAAATTAACACAGGCGTG
1 CGA-ACCTGTCAAATTAACACGGGCGTG
91459449 GCCCTTAATA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
54 1 0.01
55 67 0.96
56 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.26, T:0.16
Consensus pattern (55 bp):
CGAACCTGTCAAATTAACACGGGCGTGCGACATGCCCATGCATAGAAACCGTGGC
Found at i:91475728 original size:5 final size:5
Alignment explanation
Indices: 91475718--91475754 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
91475708 CTGTGTGAAA
91475718 AAAAT AAAAT AAAAT AAAAT AAAGA- AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAAAT AA
91475755 CACACAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 1 0.03
5 28 0.93
6 1 0.03
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:91480164 original size:5 final size:5
Alignment explanation
Indices: 91480154--91480190 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
91480144 ATTTGTGAAA
91480154 AAAAT AAAAT AAAAT AAAAT AAAGA- AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAAAT AA
91480191 CGCACAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 1 0.03
5 28 0.93
6 1 0.03
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:91481037 original size:16 final size:16
Alignment explanation
Indices: 91481016--91481046 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
91481006 AATATTTTCA
91481016 AGTTTAGACTTTCTCG
1 AGTTTAGACTTTCTCG
91481032 AGTTTAGACTTTCTC
1 AGTTTAGACTTTCTC
91481047 AGATTCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.45
Consensus pattern (16 bp):
AGTTTAGACTTTCTCG
Found at i:91481941 original size:11 final size:10
Alignment explanation
Indices: 91481925--91481968 Score: 54
Period size: 11 Copynumber: 4.3 Consensus size: 10
91481915 TTAAGAAAAT
91481925 AAAATTATCAA
1 AAAATTAT-AA
91481936 AAAATTAT-A
1 AAAATTATAA
91481945 AAAATTATAA
1 AAAATTATAA
*
91481955 ATAATTAATAA
1 AAAATT-ATAA
91481966 AAA
1 AAA
91481969 TTCTAACAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 9 0.31
10 6 0.21
11 14 0.48
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (10 bp):
AAAATTATAA
Found at i:91481947 original size:19 final size:19
Alignment explanation
Indices: 91481922--91481967 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
91481912 GCATTAAGAA
91481922 AATAAAATTATCAAAAAATT
1 AATAAAATTAT-AAAAAATT
*
91481942 -ATAAAAATTATAAATAATT
1 AAT-AAAATTATAAAAAATT
91481961 AATAAAA
1 AATAAAA
91481968 ATTCTAACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (19 bp):
AATAAAATTATAAAAAATT
Found at i:91481950 original size:20 final size:20
Alignment explanation
Indices: 91481925--91481970 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
91481915 TTAAGAAAAT
91481925 AAAATTATCAAAAAATT-ATA
1 AAAATTAT-AAAAAATTAATA
*
91481945 AAAATTATAAATAATTAATA
1 AAAATTATAAAAAATTAATA
91481965 AAAATT
1 AAAATT
91481971 CTAACAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAATTATAAAAAATTAATA
Found at i:91481970 original size:10 final size:9
Alignment explanation
Indices: 91481925--91482023 Score: 65
Period size: 9 Copynumber: 10.3 Consensus size: 9
91481915 TTAAGAAAAT
91481925 AAAATTATCAA
1 AAAATTAT--A
91481936 AAAATTATA
1 AAAATTATA
91481945 AAAATTATA
1 AAAATTATA
91481954 AATAATTAATA
1 AA-AATT-ATA
*
91481965 AAAATTCTA
1 AAAATTATA
* *
91481974 ACAAAGTACA
1 A-AAATTATA
*
91481984 AAAATCATA
1 AAAATTATA
*
91481993 AAAGGTTAT-
1 AAA-ATTATA
* *
91482002 AAAATGACA
1 AAAATTATA
91482011 AAAATTTATA
1 AAAA-TTATA
91482021 AAA
1 AAA
91482024 TAGAATAAAA
Statistics
Matches: 68, Mismatches: 14, Indels: 13
0.72 0.15 0.14
Matches are distributed among these distances:
8 2 0.03
9 30 0.44
10 23 0.34
11 13 0.19
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.27
Consensus pattern (9 bp):
AAAATTATA
Found at i:91483490 original size:14 final size:14
Alignment explanation
Indices: 91483471--91483500 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
91483461 CAAGGCTATG
91483471 GACCCAACTCACAA
1 GACCCAACTCACAA
91483485 GACCCAACTCACAA
1 GACCCAACTCACAA
91483499 GA
1 GA
91483501 ACCCTGTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.40, G:0.10, T:0.07
Consensus pattern (14 bp):
GACCCAACTCACAA
Found at i:91498615 original size:47 final size:45
Alignment explanation
Indices: 91498465--91498639 Score: 158
Period size: 46 Copynumber: 3.8 Consensus size: 45
91498455 CATCTCGTAA
* * * * *
91498465 CCGATGCATGTCCCAGACATGTCTTACACTAACT-TACGTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-TGTAT-AATG
* * * *
91498511 ACAATGCATGTCCCAGACATGTCTTACACTAGCACTTGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTAT-AATG
*
91498557 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATG-AT-ATG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT--TGTATAATG
*
91498604 ACCGATGCATGTCCCAGACATGTCTTGCACTAGCTC
1 -CCGATGCATGTCCCAGACATGTCTTACACTAGCTC
91498640 ACAGTAATAT
Statistics
Matches: 109, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
46 54 0.50
47 32 0.29
48 20 0.18
49 1 0.01
50 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTATAATG
Found at i:91505734 original size:50 final size:51
Alignment explanation
Indices: 91505657--91505785 Score: 208
Period size: 50 Copynumber: 2.5 Consensus size: 51
91505647 GACCATGGCA
91505657 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
*
91505708 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
91505758 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
91505786 CTGATCAGTG
Statistics
Matches: 73, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
50 45 0.62
51 28 0.38
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:91505799 original size:31 final size:31
Alignment explanation
Indices: 91505761--91505878 Score: 175
Period size: 31 Copynumber: 3.8 Consensus size: 31
91505751 ACAAATGACA
*
91505761 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
91505792 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
91505823 ACTGAAAAGTGGTAG-TACCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCT-CCGGCTACCTGATC
* * *
91505854 AATGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
91505879 AAGTGACAAG
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
30 1 0.01
31 78 0.98
32 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:91511704 original size:437 final size:437
Alignment explanation
Indices: 91510890--91511763 Score: 1658
Period size: 437 Copynumber: 2.0 Consensus size: 437
91510880 GCTTATTTGC
91510890 CACCCTTACTTAACACAACCTACATAATAGCAACCACAATCATGATAAGACTATCTCATGCAACC
1 CACCCTTACTTAACACAACCTACATAATAGCAACCACAATCATGATAAGACTATCTCATGCAACC
* *
91510955 AAATCAGCCACAACTGACAACATTCCATTTGTGCATTTTATTCATCTATGAAAATAACATCTTTG
66 AAATCAGCCACAACTAACAACATTCCATTTGTGCATTTTATTCATCTATGAAAATAACATCTTTA
*
91511020 CATATAAATCAAAATGAATATTAGCCATCATGTGAGGTTTAATACAAAATGAGGGATTTATCCCA
131 CATATAAATCAAAATGAATATTAGCCATCATGTGAGGCTTAATACAAAATGAGGGATTTATCCCA
91511085 AGCCAACACATTGACCAAATTAATAATAACACAAAACACAAGTCTAAATCCCTATAAATGTCATA
196 AGCCAACACATTGACCAAATTAATAATAACACAAAACACAAGTCTAAATCCCTATAAATGTCATA
* *
91511150 TTCAAAAATATAAATCAAACTATATCGAATACTTCGATTGATAGTGTGATTGATATCTCTGACTT
261 TTCAAAAATATAAATCAAACTATATCGAATACTTCGATTGATAATGTGATCGATATCTCTGACTT
91511215 TCTTTGGTCATTGAGTTAGATAGGCGGCACTCTAAGGAAATGAAAAATGAGAGGGAGTAAGCATA
326 TCTTTGGTCATTGAGTTAGATAGGCGGCACTCTAAGGAAATGAAAAATGAGAGGGAGTAAGCATA
*
91511280 AAGCTTAGTAAGTTGCATATAAATAAATATACAACATAACTTTACCA
391 AAGCTTAGTAAGTTGCACATAAATAAATATACAACATAACTTTACCA
*
91511327 CACCCTTACTTAACACAACCTACATAATAGCAACCACAATCATGATAAGACTATCTCATGCAATC
1 CACCCTTACTTAACACAACCTACATAATAGCAACCACAATCATGATAAGACTATCTCATGCAACC
* *
91511392 AAATCAGCCACAACTAACAACATTTCATTTGTGCATTTTCTTCATCTATGAAAATAACATCTTTA
66 AAATCAGCCACAACTAACAACATTCCATTTGTGCATTTTATTCATCTATGAAAATAACATCTTTA
91511457 CATATAAATCAAAATGAATATTAGCCATCATGTGAGGCTTAATACAAAATGAGGGATTTATCCCA
131 CATATAAATCAAAATGAATATTAGCCATCATGTGAGGCTTAATACAAAATGAGGGATTTATCCCA
*
91511522 AGCCAACACATTGACCAAATTAATAATAACACAAAACACAAGTCTAAATCCCTATACATGTCATA
196 AGCCAACACATTGACCAAATTAATAATAACACAAAACACAAGTCTAAATCCCTATAAATGTCATA
91511587 TTCAAAAATATAAATCAAACTATATCGAATACTTCGATTGATAATGTGATCGATATCTCTGACTT
261 TTCAAAAATATAAATCAAACTATATCGAATACTTCGATTGATAATGTGATCGATATCTCTGACTT
91511652 TCTTTGGTCATTGAGTTAGATAGGCGGCACTCTAAGGAAATGAAAAATGAGAGGGAGTAAGCATA
326 TCTTTGGTCATTGAGTTAGATAGGCGGCACTCTAAGGAAATGAAAAATGAGAGGGAGTAAGCATA
91511717 AAGCTTAGTAAGTTGCACATAAATAAATATACAACATAACTTTACCA
391 AAGCTTAGTAAGTTGCACATAAATAAATATACAACATAACTTTACCA
91511764 TTCATCAACA
Statistics
Matches: 427, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
437 427 1.00
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (437 bp):
CACCCTTACTTAACACAACCTACATAATAGCAACCACAATCATGATAAGACTATCTCATGCAACC
AAATCAGCCACAACTAACAACATTCCATTTGTGCATTTTATTCATCTATGAAAATAACATCTTTA
CATATAAATCAAAATGAATATTAGCCATCATGTGAGGCTTAATACAAAATGAGGGATTTATCCCA
AGCCAACACATTGACCAAATTAATAATAACACAAAACACAAGTCTAAATCCCTATAAATGTCATA
TTCAAAAATATAAATCAAACTATATCGAATACTTCGATTGATAATGTGATCGATATCTCTGACTT
TCTTTGGTCATTGAGTTAGATAGGCGGCACTCTAAGGAAATGAAAAATGAGAGGGAGTAAGCATA
AAGCTTAGTAAGTTGCACATAAATAAATATACAACATAACTTTACCA
Found at i:91512105 original size:46 final size:46
Alignment explanation
Indices: 91512001--91512164 Score: 167
Period size: 46 Copynumber: 3.5 Consensus size: 46
91511991 GTGTCGATTC
* * * * *
91512001 CATGTCCCAGACATGGTCGTACACTG-ACACATCTCGTA-GCCCATG-
1 CATGTCCCAGACAT-GTCTTACACTGCACTCGTCTC-AAGGCCGATGA
91512046 CATGTCCCAGACATGTCTTACACTG-ACTTACGTCTCAAGGCCGAT-A
1 CATGTCCCAGACATGTCTTACACTGCAC-T-CGTCTCAAGGCCGATGA
* * *
91512092 CATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGC
1 CATGTCCCAGACATGTCTTACACT-GCACTCGTCTCAAGGCCGATGA
91512139 CATGTCCCAGACATGGTCTTACACTG
1 CATGTCCCAGACAT-GTCTTACACTG
91512165 GCTTTTATGA
Statistics
Matches: 102, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
44 12 0.12
45 15 0.15
46 47 0.46
47 16 0.16
48 12 0.12
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGCACTCGTCTCAAGGCCGATGA
Found at i:91519151 original size:14 final size:14
Alignment explanation
Indices: 91519134--91519168 Score: 61
Period size: 14 Copynumber: 2.4 Consensus size: 14
91519124 CTCACATTTC
91519134 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
91519148 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
91519162 TATTTCT
1 T-TTTCT
91519169 GCTTCTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.09, C:0.26, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTCTTTTCTCCA
Found at i:91519152 original size:19 final size:18
Alignment explanation
Indices: 91519114--91519158 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
91519104 TACGGTACGC
91519114 TTCTTTTC-TTCTCACAT
1 TTCTTTTCTTTCTCACAT
91519131 TTCTTTTCTTTTCTC-CATT
1 TTCTTTTC-TTTCTCACA-T
91519150 TTCTTTTCT
1 TTCTTTTCT
91519159 CCATATTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 8 0.32
18 3 0.12
19 14 0.56
ACGTcount: A:0.07, C:0.27, G:0.00, T:0.67
Consensus pattern (18 bp):
TTCTTTTCTTTCTCACAT
Found at i:91521867 original size:16 final size:17
Alignment explanation
Indices: 91521848--91521879 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
91521838 TTATTAAATC
91521848 ATATATTTAA-ATTAAA
1 ATATATTTAATATTAAA
91521864 ATATATTTAATATTAA
1 ATATATTTAATATTAA
91521880 TTATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTTAATATTAAA
Found at i:91521983 original size:18 final size:17
Alignment explanation
Indices: 91521955--91521989 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
91521945 ATTATTAAGA
*
91521955 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
91521972 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
91521990 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:91522098 original size:147 final size:149
Alignment explanation
Indices: 91521943--91522217 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
91521933 ATAAGAATAT
*
91521943 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
91522008 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
91522071 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
91522090 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
91522155 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
91522218 CAATAATCAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 91 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:91522130 original size:18 final size:17
Alignment explanation
Indices: 91522102--91522136 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
91522092 ATTATTAAGA
*
91522102 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
91522119 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
91522137 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:91522387 original size:45 final size:44
Alignment explanation
Indices: 91522298--91522392 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 44
91522288 TTACACCTCT
* *
91522298 ATTACATTCAACCAAACACAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACACAGATTTACTATTACACCTCTATTCC
*
91522342 ATTACATTCAACCAAACA-ATTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACACA--GATTTACTATTACACCTCTATTCC
91522387 ATTACA
1 ATTACA
91522393 CCTCTAATCC
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 18 0.39
45 27 0.59
ACGTcount: A:0.34, C:0.27, G:0.04, T:0.35
Consensus pattern (44 bp):
ATTACATTCAACCAAACACAGATTTACTATTACACCTCTATTCC
Found at i:91522392 original size:16 final size:16
Alignment explanation
Indices: 91522373--91522424 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
91522363 GATTTGCTAT
* *
91522373 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
91522389 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
91522405 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
91522421 TACA
1 TACA
91522425 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:91530484 original size:93 final size:93
Alignment explanation
Indices: 91530369--91530541 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
91530359 CGCCCATAAG
** * *
91530369 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCGCAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCACAAGTGAACTCGAACTCAACTCA
*
91530434 ATGAGCTCGGATGCCTAGTTAGATCTCT
66 ACGAGCTCGGATGCCTAGTTAGATCTCT
* * *
91530462 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCACAAGTGAACTCGAACTCAACTCA
*
91530527 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
91530542 CAAATATCCC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCACAAGTGAACTCGAACTCAACTCA
ACGAGCTCGGATGCCTAGTTAGATCTCT
Found at i:91535194 original size:20 final size:21
Alignment explanation
Indices: 91535149--91535194 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
91535139 AATATAAATT
* * *
91535149 ATTTAATAATTTTTAAAATTA
1 ATTTAATAATTGTCAAAATAA
91535170 A-TTAATAA-TGTCAAAATAA
1 ATTTAATAATTGTCAAAATAA
91535189 ATTTAA
1 ATTTAA
91535195 ACATATTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
19 9 0.43
20 11 0.52
21 1 0.05
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (21 bp):
ATTTAATAATTGTCAAAATAA
Found at i:91546322 original size:55 final size:56
Alignment explanation
Indices: 91546251--91546362 Score: 174
Period size: 56 Copynumber: 2.0 Consensus size: 56
91546241 GGCCTTGATG
* *
91546251 TTATGGCTGAATTTGGTGA-GTCACATGATAGCGTTACGATAAAA-TCGTTTTCATT
1 TTATGGCTGAAGTTGGTGATGTCACATGATAGCGTTACAATAAAACT-GTTTTCATT
*
91546306 TTATGGCTGAAGTTGGTGATGTTACATGATAGCGTTACAATAAAACTGTTTTCATT
1 TTATGGCTGAAGTTGGTGATGTCACATGATAGCGTTACAATAAAACTGTTTTCATT
91546362 T
1 T
91546363 ATTTACTCTT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
55 18 0.35
56 33 0.63
57 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (56 bp):
TTATGGCTGAAGTTGGTGATGTCACATGATAGCGTTACAATAAAACTGTTTTCATT
Found at i:91550901 original size:55 final size:56
Alignment explanation
Indices: 91550830--91550941 Score: 174
Period size: 56 Copynumber: 2.0 Consensus size: 56
91550820 GGCCTTGATG
* *
91550830 TTATGGCTGAATTTGGTGA-GTCACATGATAGCGTTACGATAAAA-TCGTTTTCATT
1 TTATGGCTGAAGTTGGTGATGTCACATGATAGCGTTACAATAAAACT-GTTTTCATT
*
91550885 TTATGGCTGAAGTTGGTGATGTTACATGATAGCGTTACAATAAAACTGTTTTCATT
1 TTATGGCTGAAGTTGGTGATGTCACATGATAGCGTTACAATAAAACTGTTTTCATT
91550941 T
1 T
91550942 ATTTACTCTT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
55 18 0.35
56 33 0.63
57 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (56 bp):
TTATGGCTGAAGTTGGTGATGTCACATGATAGCGTTACAATAAAACTGTTTTCATT
Found at i:91556340 original size:47 final size:47
Alignment explanation
Indices: 91556271--91556366 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
91556261 ATCAGGAATG
*
91556271 TTTAGAAGCATTTGATACTCTTAAGGATAAATTAATTAATGATCCAA
1 TTTAGAAGCATTTAATACTCTTAAGGATAAATTAATTAATGATCCAA
*
91556318 TTTAGAAGCATTTAATACTCTTAAGGATAAATTAATTAATGCTCCAA
1 TTTAGAAGCATTTAATACTCTTAAGGATAAATTAATTAATGATCCAA
91556365 TT
1 TT
91556367 GTAGTTGCAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (47 bp):
TTTAGAAGCATTTAATACTCTTAAGGATAAATTAATTAATGATCCAA
Found at i:91559206 original size:3 final size:3
Alignment explanation
Indices: 91559189--91559222 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
91559179 ATTCCTTTAC
91559189 ATT ATT -TT AATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT A
91559223 CTCTTATTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 25 0.86
4 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:91591073 original size:40 final size:40
Alignment explanation
Indices: 91590965--91591073 Score: 191
Period size: 40 Copynumber: 2.7 Consensus size: 40
91590955 GCTACTTGCT
* *
91590965 CAAATGCCTTCGGGACTTAGCCCGGTTAGAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
91591005 CAAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
91591045 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
91591074 CATCCGAATA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:91596381 original size:23 final size:22
Alignment explanation
Indices: 91596340--91596382 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
91596330 AGCATAAATT
* *
91596340 CATGAGATTAGCATGGTAATAG
1 CATGAGATGAGCATAGTAATAG
91596362 CATGAGAATGAGCATAGTAAT
1 CATGAG-ATGAGCATAGTAAT
91596383 GGTATGGGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.40, C:0.09, G:0.26, T:0.26
Consensus pattern (22 bp):
CATGAGATGAGCATAGTAATAG
Found at i:91603948 original size:303 final size:303
Alignment explanation
Indices: 91603401--91604008 Score: 1189
Period size: 303 Copynumber: 2.0 Consensus size: 303
91603391 CATTATTGTT
91603401 GAAATCCCCTAATTTGATCCCTATTTTTGTCGAGATTTGATTTGAACTAATTGCTTAGCTATGTT
1 GAAATCCCCTAATTTGATCCCTATTTTTGTCGAGATTTGATTTGAACTAATTGCTTAGCTATGTT
91603466 TTCCTCTTCTATGTATTTGACTTGTTCTAAAAAAAATTACTTCAACATATATTAATAGTAATTCG
66 TTCCTCTTCTATGTATTTGACTTGTTCTAAAAAAAATTACTTCAACATATATTAATAGTAATTCG
91603531 TCATTTTTTAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCACTTGTATTTAACTGATAA
131 TCATTTTTTAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCACTTGTATTTAACTGATAA
91603596 CTAGTTGTTTTTCTAGCTAGGTAATTTTTCAATTCAATCTCGATTCTAACCTTTTCCTTCAGCTT
196 CTAGTTGTTTTTCTAGCTAGGTAATTTTTCAATTCAATCTCGATTCTAACCTTTTCCTTCAGCTT
91603661 GTGACCACACCCCCTAACCAAAGCCACGTTACAACCCTCTAAA
261 GTGACCACACCCCCTAACCAAAGCCACGTTACAACCCTCTAAA
91603704 GAAATCCCCTAATTTGATCCCTATTTTTGTCGAGATTTGATTTGAACTAATTGCTTAGCTATGTT
1 GAAATCCCCTAATTTGATCCCTATTTTTGTCGAGATTTGATTTGAACTAATTGCTTAGCTATGTT
*
91603769 TTCTTCTTCTATGTATTTGACTTGTTCTAAAAAAAATTACTTCAACATATATTAATAGTAATTCG
66 TTCCTCTTCTATGTATTTGACTTGTTCTAAAAAAAATTACTTCAACATATATTAATAGTAATTCG
91603834 TCATTTTTTAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCACTTGTATTTAACTGATAA
131 TCATTTTTTAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCACTTGTATTTAACTGATAA
91603899 CTAGTTGTTTTTCTAGCTAGGTAATTTTTCAATTCAATCTCGATTCTAACCTTTTCCTTCAGCTT
196 CTAGTTGTTTTTCTAGCTAGGTAATTTTTCAATTCAATCTCGATTCTAACCTTTTCCTTCAGCTT
* *
91603964 GTGACCACACCCCTTAACCAAAGCCATGTTACAACCCTCTAAA
261 GTGACCACACCCCCTAACCAAAGCCACGTTACAACCCTCTAAA
91604007 GA
1 GA
91604009 CCTTTTTGAT
Statistics
Matches: 302, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
303 302 1.00
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (303 bp):
GAAATCCCCTAATTTGATCCCTATTTTTGTCGAGATTTGATTTGAACTAATTGCTTAGCTATGTT
TTCCTCTTCTATGTATTTGACTTGTTCTAAAAAAAATTACTTCAACATATATTAATAGTAATTCG
TCATTTTTTAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCACTTGTATTTAACTGATAA
CTAGTTGTTTTTCTAGCTAGGTAATTTTTCAATTCAATCTCGATTCTAACCTTTTCCTTCAGCTT
GTGACCACACCCCCTAACCAAAGCCACGTTACAACCCTCTAAA
Found at i:91623508 original size:43 final size:43
Alignment explanation
Indices: 91623223--91623506 Score: 460
Period size: 43 Copynumber: 6.6 Consensus size: 43
91623213 CCGGCATTAC
*
91623223 GCCTGCTAGGCACGAAGGCCTGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
91623266 GCCTGCTAGGCACGAAGGCCTGAATACACATCATCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
91623309 GCCTACTAGGCACGAAGGCCCAAATATACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
91623352 GCCTGCTAGGCATGAATGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
91623395 GCCTACTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
91623438 GCCTGCTAGGCACGAAGGCCCGAATATACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
91623481 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
91623507 TAATACCAGC
Statistics
Matches: 222, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 222 1.00
ACGTcount: A:0.31, C:0.32, G:0.25, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:91623583 original size:38 final size:38
Alignment explanation
Indices: 91623499--91623602 Score: 127
Period size: 38 Copynumber: 2.7 Consensus size: 38
91623489 GGCACGAAGG
* * * *
91623499 CCCGAATATAATACCAGCACTAGGCCTGTAGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGTAGGATTTAA
* *
91623537 CCCTGATATAATACCAGCACGAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGTAGGATTTAA
* **
91623575 CTCGGATATTTTACCAGCACGAAGCCTG
1 CCCGGATATAATACCAGCACGAAGCCTG
91623603 CGGGTCTTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 56 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGTAGGATTTAA
Found at i:91628692 original size:43 final size:43
Alignment explanation
Indices: 91628407--91628690 Score: 433
Period size: 43 Copynumber: 6.6 Consensus size: 43
91628397 CCGGCATTAC
*
91628407 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * * *
91628450 GACTACTAGGCACGAAGGCCCAAATACACATCATCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
91628493 GCCTGCTAGGCACGAAGGCCCGAATATACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
91628536 GCCTGCTACGCATGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
91628579 GCCTGCTAGGAACGAAGTCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
91628622 GCCTACTAGGCACGAAGGCCCGAATATACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
91628665 GCCTGCTACGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
91628691 TAATACCAGC
Statistics
Matches: 214, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 214 1.00
ACGTcount: A:0.32, C:0.32, G:0.24, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:91628731 original size:38 final size:38
Alignment explanation
Indices: 91628683--91628806 Score: 149
Period size: 38 Copynumber: 3.2 Consensus size: 38
91628673 CGCACGAAGG
* * * *
91628683 CCCGAATATAATACCAGCATTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAA
*
91628721 CCCTGATATAATACCAGCATGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAA
** * *
91628759 CCCGGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCATGAAGCCTGCGGG-ATTTAA
91628798 GCCCGGATA
1 -CCCGGATA
91628807 CACATCAAAT
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 61 0.82
39 5 0.07
40 8 0.11
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (38 bp):
CCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAA
Found at i:91635149 original size:54 final size:54
Alignment explanation
Indices: 91635091--91635235 Score: 146
Period size: 54 Copynumber: 2.7 Consensus size: 54
91635081 TCTCTACCCA
* * * * *
91635091 TGTAACTCTCTGACTAAATACACACGGCCGTGTCACTGATCGTGTTCCAGGCCG
1 TGTAACTCACTGACTAAATACACACGGCCGTGTCACAGACCATGTGCCAGGCCG
* ** * * * **
91635145 TGTAACTCGCTGACTTGATACACACGGCTGTGTCGCAGCCCATGTGCCAGGTTG
1 TGTAACTCACTGACTAAATACACACGGCCGTGTCACAGACCATGTGCCAGGCCG
* * *
91635199 TGTAACTCACTGACTCAATACACACAGTCGTGTCACA
1 TGTAACTCACTGACTAAATACACACGGCCGTGTCACA
91635236 AACTGTGTCT
Statistics
Matches: 72, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (54 bp):
TGTAACTCACTGACTAAATACACACGGCCGTGTCACAGACCATGTGCCAGGCCG
Found at i:91636171 original size:40 final size:40
Alignment explanation
Indices: 91636127--91636304 Score: 230
Period size: 40 Copynumber: 4.4 Consensus size: 40
91636117 CTAGAAATTG
* * *
91636127 GGGCACGTGTGTACATTTAGGGGTATCGAAGTACAAACAA
1 GGGCACGTATGTGCATTCAGGGGTATCGAAGTACAAACAA
* *
91636167 GGGCACGTATGTACATTCAGGGGTATCAAAGTACAAACAA
1 GGGCACGTATGTGCATTCAGGGGTATCGAAGTACAAACAA
* * * * * *
91636207 GGGCACGTATGTGTATTAAAGGGTACCGATGTACAAAAAA
1 GGGCACGTATGTGCATTCAGGGGTATCGAAGTACAAACAA
* *
91636247 GGGCCACGTATATGCATTCAGGGGTATCGAAGTACAAACAG
1 GGG-CACGTATGTGCATTCAGGGGTATCGAAGTACAAACAA
91636288 GGGCACGTATGTGCATT
1 GGGCACGTATGTGCATT
91636305 TCATGAAACG
Statistics
Matches: 117, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
40 85 0.73
41 32 0.27
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (40 bp):
GGGCACGTATGTGCATTCAGGGGTATCGAAGTACAAACAA
Found at i:91636180 original size:20 final size:20
Alignment explanation
Indices: 91636157--91636218 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
91636147 GGGTATCGAA
91636157 GTACAAACAAGGGCACGTAT
1 GTACAAACAAGGGCACGTAT
** * * * *
91636177 GTACATTCAGGGGTATC-AAA
1 GTACAAACAAGGGCA-CGTAT
91636197 GTACAAACAAGGGCACGTAT
1 GTACAAACAAGGGCACGTAT
91636217 GT
1 GT
91636219 GTATTAAAGG
Statistics
Matches: 28, Mismatches: 12, Indels: 4
0.64 0.27 0.09
Matches are distributed among these distances:
19 1 0.04
20 26 0.93
21 1 0.04
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.19
Consensus pattern (20 bp):
GTACAAACAAGGGCACGTAT
Found at i:91636280 original size:81 final size:80
Alignment explanation
Indices: 91636147--91636300 Score: 236
Period size: 81 Copynumber: 1.9 Consensus size: 80
91636137 GTACATTTAG
* * *
91636147 GGGTATCGAAGTACAAACAAGGGCACGTATGTACATTCAGGGGTATCAAAGTACAAACAAGGGCA
1 GGGTACCGAAGTACAAAAAAGGGCACGTATATACATTCAGGGGTATCAAAGTACAAACAAGGGCA
91636212 CGTATGTGTATTAAA
66 CGTATGTGTATTAAA
* * * *
91636227 GGGTACCGATGTACAAAAAAGGGCCACGTATATGCATTCAGGGGTATCGAAGTACAAACAGGGGC
1 GGGTACCGAAGTACAAAAAAGGG-CACGTATATACATTCAGGGGTATCAAAGTACAAACAAGGGC
91636292 ACGTATGTG
65 ACGTATGTG
91636301 CATTTCATGA
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
80 20 0.30
81 46 0.70
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (80 bp):
GGGTACCGAAGTACAAAAAAGGGCACGTATATACATTCAGGGGTATCAAAGTACAAACAAGGGCA
CGTATGTGTATTAAA
Found at i:91638823 original size:93 final size:93
Alignment explanation
Indices: 91638711--91638882 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
91638701 CGCCCATAAG
* *
91638711 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
91638776 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
91638804 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
91638869 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
91638883 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:91638879 original size:46 final size:46
Alignment explanation
Indices: 91638704--91638879 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
91638694 TGTAACCCGC
* * *
91638704 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
91638750 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
91638800 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
91638843 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
91638880 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91646159 original size:21 final size:21
Alignment explanation
Indices: 91646132--91646186 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
91646122 ATAGCGGTGG
*
91646132 CGGTGAGATTAGTTACTGTAA
1 CGGTGAGATTAGATACTGTAA
* * *
91646153 TGGTGAGATTGGATACTGTAG
1 CGGTGAGATTAGATACTGTAA
91646174 CGGTGAGATTAGA
1 CGGTGAGATTAGA
91646187 AATAATGGTG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.27, C:0.07, G:0.35, T:0.31
Consensus pattern (21 bp):
CGGTGAGATTAGATACTGTAA
Found at i:91647452 original size:33 final size:31
Alignment explanation
Indices: 91647374--91647456 Score: 103
Period size: 31 Copynumber: 2.6 Consensus size: 31
91647364 CTTCTTGCAT
* *
91647374 TAAAATCCAACCAAATACAACAAATATAGCA
1 TAAAATACAACCAAAAACAACAAATATAGCA
* * *
91647405 TAAAATACAGCCAAAAACAGCAAATTTAGCA
1 TAAAATACAACCAAAAACAACAAATATAGCA
91647436 TAAAAAATACAACCAAAAACA
1 T--AAAATACAACCAAAAACA
91647457 TTAATTCTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
31 27 0.61
33 17 0.39
ACGTcount: A:0.60, C:0.20, G:0.05, T:0.14
Consensus pattern (31 bp):
TAAAATACAACCAAAAACAACAAATATAGCA
Found at i:91648156 original size:13 final size:14
Alignment explanation
Indices: 91648131--91648159 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91648121 TGATGAATTG
91648131 AATTAAACAATTAT
1 AATTAAACAATTAT
91648145 AATTAAAC-ATTAT
1 AATTAAACAATTAT
91648158 AA
1 AA
91648160 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:91648365 original size:13 final size:14
Alignment explanation
Indices: 91648340--91648368 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91648330 TGATGAATTG
91648340 AATTAAACAATTAT
1 AATTAAACAATTAT
91648354 AATTAAAC-ATTAT
1 AATTAAACAATTAT
91648367 AA
1 AA
91648369 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:91648427 original size:209 final size:209
Alignment explanation
Indices: 91648067--91648486 Score: 831
Period size: 209 Copynumber: 2.0 Consensus size: 209
91648057 GTTAGAAACG
91648067 AAATATAAAATAAAAAGGAATGCAACATAACTTAACATTATTTAAAACTACTAATGATGAATTGA
1 AAATATAAAATAAAAAGGAATGCAACATAACTTAACATTATTTAAAACTACTAATGATGAATTGA
91648132 ATTAAACAATTATAATTAAACATTATAAATATTTAGAATAAATCAATTATTATTAAGTAAATATA
66 ATTAAACAATTATAATTAAACATTATAAATATTTAGAATAAATCAATTATTATTAAGTAAATATA
91648197 CCATAATTTCTCTAGCTTCGGATATCATAGGAGATCCATCTTTCTTCTTATGCGTAATCTCAAAA
131 CCATAATTTCTCTAGCTTCGGATATCATAGGAGATCCATCTTTCTTCTTATGCGTAATCTCAAAA
91648262 AGCTGAAGGCGTCC
196 AGCTGAAGGCGTCC
*
91648276 AAATATATAATAAAAAGGAATGCAACATAACTTAACATTATTTAAAACTACTAATGATGAATTGA
1 AAATATAAAATAAAAAGGAATGCAACATAACTTAACATTATTTAAAACTACTAATGATGAATTGA
91648341 ATTAAACAATTATAATTAAACATTATAAATATTTAGAATAAATCAATTATTATTAAGTAAATATA
66 ATTAAACAATTATAATTAAACATTATAAATATTTAGAATAAATCAATTATTATTAAGTAAATATA
91648406 CCATAATTTCTCTAGCTTCGGATATCATAGGAGATCCATCTTTCTTCTTATGCGTAATCTCAAAA
131 CCATAATTTCTCTAGCTTCGGATATCATAGGAGATCCATCTTTCTTCTTATGCGTAATCTCAAAA
91648471 AGCTGAAGGCGTCC
196 AGCTGAAGGCGTCC
91648485 AA
1 AA
91648487 CTTTTTGTCC
Statistics
Matches: 210, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
209 210 1.00
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (209 bp):
AAATATAAAATAAAAAGGAATGCAACATAACTTAACATTATTTAAAACTACTAATGATGAATTGA
ATTAAACAATTATAATTAAACATTATAAATATTTAGAATAAATCAATTATTATTAAGTAAATATA
CCATAATTTCTCTAGCTTCGGATATCATAGGAGATCCATCTTTCTTCTTATGCGTAATCTCAAAA
AGCTGAAGGCGTCC
Found at i:91652372 original size:9 final size:9
Alignment explanation
Indices: 91652358--91652611 Score: 114
Period size: 9 Copynumber: 28.0 Consensus size: 9
91652348 TAAGTATAAC
91652358 TAAGTTATG
1 TAAGTTATG
91652367 TAAGTTATG
1 TAAGTTATG
* * *
91652376 ATATGATATA
1 -TAAGTTATG
*
91652386 T-ATTTATG
1 TAAGTTATG
91652394 T-A-TTATG
1 TAAGTTATG
91652401 TAAGTTATG
1 TAAGTTATG
*
91652410 TAAATTATG
1 TAAGTTATG
91652419 TAAGTTATG
1 TAAGTTATG
91652428 TAAGTTATCCG
1 TAAGTTAT--G
91652439 -AA-TTATG
1 TAAGTTATG
*
91652446 TAAATTATG
1 TAAGTTATG
* *
91652455 TACGATATG
1 TAAGTTATG
*
91652464 ATATATATCTATG
1 -TA-A-GT-TATG
91652477 T-A-TTATG
1 TAAGTTATG
91652484 TAAGTTATG
1 TAAGTTATG
*
91652493 TAAATTATG
1 TAAGTTATG
* *
91652502 CAAGTTGT-
1 TAAGTTATG
**
91652510 TCATCTTATG
1 T-AAGTTATG
*
91652520 TAAATTATG
1 TAAGTTATG
*
91652529 TAAGATATGATA
1 TAAG-T-T-ATG
*
91652541 TATATTTATG
1 TA-AGTTATG
91652551 T-A-TTATG
1 TAAGTTATG
91652558 TAAGTTATG
1 TAAGTTATG
*
91652567 TAAATTATG
1 TAAGTTATG
* *
91652576 TAAGTTGTT
1 TAAGTTATG
**
91652585 TATCTTATG
1 TAAGTTATG
*
91652594 TAAATTATG
1 TAAGTTATG
*
91652603 TAAGATATG
1 TAAGTTATG
91652612 ATATATATAT
Statistics
Matches: 183, Mismatches: 41, Indels: 42
0.69 0.15 0.16
Matches are distributed among these distances:
7 18 0.10
8 12 0.07
9 123 0.67
10 16 0.09
11 3 0.02
12 6 0.03
13 5 0.03
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:91652418 original size:18 final size:18
Alignment explanation
Indices: 91652395--91652654 Score: 121
Period size: 18 Copynumber: 14.5 Consensus size: 18
91652385 ATATTTATGT
91652395 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
91652413 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
*
91652431 GTTATCCG-AA-TTATGTAA
1 ATTAT--GTAAGTTATGTAA
* *
91652449 ATTATGTACGATATGATATA
1 ATTATGTAAGTTATG-TA-A
91652469 TATCTATGT-A-TTATGTAA
1 -AT-TATGTAAGTTATGTAA
* * *
91652487 GTTATGTAAATTATGCAA
1 ATTATGTAAGTTATGTAA
* * **
91652505 GTTGT-TCATCTTATGTAA
1 ATTATGT-AAGTTATGTAA
*
91652523 ATTATGTAAGATATGATATA
1 ATTATGTAAGTTATG-TA-A
91652543 TATTTATGT-A-TTATGTAA
1 -A-TTATGTAAGTTATGTAA
* *
91652561 GTTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
* * * **
91652579 GTTGTTTATCTTATGTAA
1 ATTATGTAAGTTATGTAA
* *
91652597 ATTATGTAAGATATG-AT
1 ATTATGTAAGTTATGTAA
* * *
91652614 A-TATAT-ATTTAT-T-T
1 ATTATGTAAGTTATGTAA
*
91652628 ATTATGTAAGTAATGTAA
1 ATTATGTAAGTTATGTAA
91652646 ATTATGTAA
1 ATTATGTAA
91652655 CATATGATAT
Statistics
Matches: 182, Mismatches: 37, Indels: 46
0.69 0.14 0.17
Matches are distributed among these distances:
14 2 0.01
15 8 0.04
16 20 0.11
17 8 0.04
18 107 0.59
19 11 0.06
20 11 0.06
21 4 0.02
22 11 0.06
ACGTcount: A:0.37, C:0.03, G:0.15, T:0.46
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:91652477 original size:83 final size:74
Alignment explanation
Indices: 91652397--91652654 Score: 363
Period size: 74 Copynumber: 3.3 Consensus size: 74
91652387 ATTTATGTAT
*
91652397 TATGTAAGTTATGTAAATTATGTAAGTTATGTAAGTTATCCGAATTATGTAAATTATGTACGATA
1 TATGTAAGTTATGTAAATTATGTAAG-T-TGT---TTAT-C---TTATGTAAATTATGTAAGATA
*
91652462 TGATATATATCTATGTAT
57 TGATATATATTTATGTAT
* *
91652480 TATGTAAGTTATGTAAATTATGCAAGTTGTTCATCTTATGTAAATTATGTAAGATATGATATATA
1 TATGTAAGTTATGTAAATTATGTAAGTTGTTTATCTTATGTAAATTATGTAAGATATGATATATA
91652545 TTTATGTAT
66 TTTATGTAT
91652554 TATGTAAGTTATGTAAATTATGTAAGTTGTTTATCTTATGTAAATTATGTAAGATATGATATATA
1 TATGTAAGTTATGTAAATTATGTAAGTTGTTTATCTTATGTAAATTATGTAAGATATG--ATATA
*
91652619 TATTTATTTAT
64 TATTTATGTAT
*
91652630 TATGTAAGTAATGTAAATTATGTAA
1 TATGTAAGTTATGTAAATTATGTAA
91652655 CATATGATAT
Statistics
Matches: 165, Mismatches: 8, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
74 93 0.56
76 39 0.24
77 1 0.01
78 3 0.02
81 3 0.02
82 1 0.01
83 25 0.15
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.46
Consensus pattern (74 bp):
TATGTAAGTTATGTAAATTATGTAAGTTGTTTATCTTATGTAAATTATGTAAGATATGATATATA
TTTATGTAT
Found at i:91652492 original size:38 final size:36
Alignment explanation
Indices: 91652440--91652619 Score: 122
Period size: 38 Copynumber: 4.9 Consensus size: 36
91652430 AGTTATCCGA
91652440 ATTATGTAAATTATGTACGATATGATATATATCTATGT
1 ATTATGTAAATTATGTA-GATATGATATATAT-TATGT
* * *
91652478 ATTATGTAAGTTATGTAAATTATGCA-AGT-TGTTCA--T
1 ATTATGTAAATTATGTAGA-TATG-ATA-TATATT-ATGT
*
91652514 CTTATGTAAATTATGTAAGATATGATATATATTTATGT
1 ATTATGTAAATTATGT-AGATATGATATATA-TTATGT
* * * *
91652552 ATTATGTAAGTTATGTAAATTATG-TA-AGT-TGTTTAT
1 ATTATGTAAATTATGTAGA-TATGATATA-TAT-TATGT
*
91652588 CTTATGTAAATTATGTAAGATATGATATATAT
1 ATTATGTAAATTATGT-AGATATGATATATAT
91652620 ATTTATTTAT
Statistics
Matches: 110, Mismatches: 15, Indels: 34
0.69 0.09 0.21
Matches are distributed among these distances:
35 3 0.03
36 44 0.40
37 16 0.15
38 45 0.41
39 2 0.02
ACGTcount: A:0.36, C:0.03, G:0.14, T:0.46
Consensus pattern (36 bp):
ATTATGTAAATTATGTAGATATGATATATATTATGT
Found at i:91652969 original size:106 final size:105
Alignment explanation
Indices: 91652800--91653059 Score: 434
Period size: 106 Copynumber: 2.5 Consensus size: 105
91652790 TGCTAAATAC
* *
91652800 AATTTAATTAGGTAATTTAAAAA-TAAAATAAAAGTAG-AAAATATTTTTCGTGATTAAAATAAA
1 AATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGAAAAATATTTTTAGTGATTAAAATAAA
* *
91652863 ATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTT
66 ATAAAATAAAATACTCAAAATAAAACTTTAAATACAATTT
*
91652903 AATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGATAAAATATTTTTAGTGATTAAATTAA
1 AATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGA-AAAATATTTTTAGTGATTAAAATAA
*
91652968 AATCAAATAAAATACTCAAAATAAAACTTTAAATACAATTT
65 AATAAAATAAAATACTCAAAATAAAACTTTAAATACAATTT
91653009 AATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTT
1 AATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGA-AAAATATTTTT
91653060 TCCAAAAAAG
Statistics
Matches: 147, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
103 22 0.15
104 14 0.10
106 111 0.76
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.35
Consensus pattern (105 bp):
AATTTAATTAGATAATTTAAAAATTAAAATAAAAGTAGAAAAATATTTTTAGTGATTAAAATAAA
ATAAAATAAAATACTCAAAATAAAACTTTAAATACAATTT
Found at i:91654270 original size:488 final size:485
Alignment explanation
Indices: 91653357--91654329 Score: 1775
Period size: 488 Copynumber: 2.0 Consensus size: 485
91653347 CATATTACTG
* *
91653357 TAAGTTGAACTATACCTCATGGTTAAGTAAGCAAAATTGTACATACACAGACAAGCATATCTAAA
1 TAAGTTGAACTATACCTCATGGTTAACTAAGCAAAATTGTACAAACACAGACAAGCATATCTAAA
91653422 TAACCAAATTCACTTGCAACATAACCAATTCATACATTGCTCACTTGACTAACATTAATCATTTT
66 TAACCAAATTCACTTGCAACATAACCAATTCATACATTGCTCACTTGACTAACATTAATCATTTT
* **
91653487 TTATGTAATTTAGCCAAATCAAAACATGTCAATTTCATATGCTATAAATCATGCTGAAATTTCAT
131 TCATGTAATTTAGCCAAATCAAAACATGTCAATTTCATATGCTATAAATCATGCCAAAATTTCAT
*
91653552 ATACACAAGTAAATCAATTTATATATATTCGGTCATTTAATATGACTTCAATATAACAGTTAAAA
196 ATACACAACTAAATCAATTTATATATATTCGGTCATTTAATATGACTTCAATATAACAGTTAAAA
91653617 CATATTCATTCTTGCCATCGTAAACCAAACATAAATAGTCAAATATCATAGCCGAACATACAATA
261 CATATTCATTCTTGCCATCGTAAACCAAACATAAATAGTCAAATATCATAGCCGAACATACAATA
*
91653682 ACATATATATATAACAATTTGACCTTTACATCCCAAATCACCAAAATTCACGACATAGGTACATA
326 ACATATATATATAACAATTTGACCTTTACATCCCAAATCACCAAAATTCACGACATAAGTACATA
* * *
91653747 TGTATTCATTTATCTATCATCAACCAAATATAACAGCTGATCACTGCCATTTTCTAAACTAATAA
391 TGTATTCATTTATCTATCATCAACCAAATATAACAGCTCATCACTGCCATTTCCCAAACTAATAA
91653812 ATAAACAAATTACAGTCAAAATGTAATTCA
456 ATAAACAAATTACAGTCAAAATGTAATTCA
* * *
91653842 TAAGTTGAACTATACCTCATGGTTAACTAAGCAAAATTTTACAAATACATACAAGCATATCTAAA
1 TAAGTTGAACTATACCTCATGGTTAACTAAGCAAAATTGTACAAACACAGACAAGCATATCTAAA
*
91653907 TAACCAAATTTTACTTGCAACATAACCAATTCATACATTGCTCACTTGACTAACATTAATCATTT
66 TAACCAAA-TTCACTTGCAACATAACCAATTCATACATTGCTCACTTGACTAACATTAATCATTT
91653972 TTCATGTAATTTAGCCAAATCAAAACATGTCAATTTCATATGCTATAAATCATGCCAAAATTTCA
130 TTCATGTAATTTAGCCAAATCAAAACATGTCAATTTCATATGCTATAAATCATGCCAAAATTTCA
*
91654037 TATACACAACTAAATCAATTTATATATATATTCGGTCATTTAATATGACTTCCATATAACAGTTA
195 TATACACAACTAAATCAA-TT-TATATATATTCGGTCATTTAATATGACTTCAATATAACAGTTA
91654102 AAACATATTCATTCTTGCCATCGTAAACCAAACATAAATAGTCAAATATCATAGCCGAACATACA
258 AAACATATTCATTCTTGCCATCGTAAACCAAACATAAATAGTCAAATATCATAGCCGAACATACA
*
91654167 ATAACATATATATATAACAATTTGACCTTTACATCCCAAATCACCAAAATTCATGACATAAGTAC
323 ATAACATATATATATAACAATTTGACCTTTACATCCCAAATCACCAAAATTCACGACATAAGTAC
91654232 ATATGTATTCATTTATCTATCATCAACCAAATATAACAGCTCATCACTGCCATTTCCCAAACTAA
388 ATATGTATTCATTTATCTATCATCAACCAAATATAACAGCTCATCACTGCCATTTCCCAAACTAA
91654297 TAAATAAACAAATTACAGTCAAAATGTAATTCA
453 TAAATAAACAAATTACAGTCAAAATGTAATTCA
91654330 ATAATAAACC
Statistics
Matches: 469, Mismatches: 16, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
485 68 0.14
486 134 0.29
487 2 0.00
488 265 0.57
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (485 bp):
TAAGTTGAACTATACCTCATGGTTAACTAAGCAAAATTGTACAAACACAGACAAGCATATCTAAA
TAACCAAATTCACTTGCAACATAACCAATTCATACATTGCTCACTTGACTAACATTAATCATTTT
TCATGTAATTTAGCCAAATCAAAACATGTCAATTTCATATGCTATAAATCATGCCAAAATTTCAT
ATACACAACTAAATCAATTTATATATATTCGGTCATTTAATATGACTTCAATATAACAGTTAAAA
CATATTCATTCTTGCCATCGTAAACCAAACATAAATAGTCAAATATCATAGCCGAACATACAATA
ACATATATATATAACAATTTGACCTTTACATCCCAAATCACCAAAATTCACGACATAAGTACATA
TGTATTCATTTATCTATCATCAACCAAATATAACAGCTCATCACTGCCATTTCCCAAACTAATAA
ATAAACAAATTACAGTCAAAATGTAATTCA
Found at i:91654420 original size:16 final size:16
Alignment explanation
Indices: 91654401--91654434 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
91654391 AACAACTACA
91654401 AATTAACAATCATACC
1 AATTAACAATCATACC
*
91654417 AATTAACAATCTTACC
1 AATTAACAATCATACC
91654433 AA
1 AA
91654435 GATGAGCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (16 bp):
AATTAACAATCATACC
Found at i:91656954 original size:44 final size:44
Alignment explanation
Indices: 91656906--91657015 Score: 116
Period size: 44 Copynumber: 2.5 Consensus size: 44
91656896 TAGAGATTTT
*
91656906 GGGGA-CAGGGGAACAGAT-TTAGGGAAAAAAGTATGGGGAAAAGA
1 GGGGATCAGGGGAA-A-ATGTTAGGGAAAAAACTATGGGGAAAAGA
** **
91656950 GGGGATTTGGGGAAAATGTTAGGGAAATGACTATGGGGAAAAGA
1 GGGGATCAGGGGAAAATGTTAGGGAAAAAACTATGGGGAAAAGA
* **
91656994 TGGGATTTGGGGAAAATGTTAG
1 GGGGATCAGGGGAAAATGTTAG
91657016 AGATTTCGGG
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
43 2 0.03
44 50 0.86
45 6 0.10
ACGTcount: A:0.37, C:0.03, G:0.41, T:0.19
Consensus pattern (44 bp):
GGGGATCAGGGGAAAATGTTAGGGAAAAAACTATGGGGAAAAGA
Found at i:91657879 original size:15 final size:15
Alignment explanation
Indices: 91657856--91657887 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
91657846 AAATAATAAT
91657856 TTATATATATTTATC
1 TTATATATATTTATC
*
91657871 TTATTTATATTTATC
1 TTATATATATTTATC
91657886 TT
1 TT
91657888 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:91657923 original size:7 final size:7
Alignment explanation
Indices: 91657913--91657959 Score: 53
Period size: 7 Copynumber: 7.0 Consensus size: 7
91657903 AAATTATACT
91657913 CTAAACC
1 CTAAACC
91657920 CTAAACC
1 CTAAACC
91657927 C--AACC
1 CTAAACC
*
91657932 CTAAACT
1 CTAAACC
*
91657939 ATAAACC
1 CTAAACC
*
91657946 CTAAATC
1 CTAAACC
91657953 CTAAACC
1 CTAAACC
91657960 ATATCCCCAA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
5 5 0.16
7 27 0.84
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:91657978 original size:34 final size:33
Alignment explanation
Indices: 91657913--91657980 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 33
91657903 AAATTATACT
*
91657913 CTAAACCCTAAACCCAACCCTAAACTATAAACC
1 CTAAACCCTAAACCCAACCCCAAACTATAAACC
* *
91657946 CTAAATCCTAAA-CCATATCCCCAAACTTTAAACC
1 CTAAACCCTAAACCCA-A-CCCCAAACTATAAACC
91657980 C
1 C
91657981 CAAAATCGCT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
32 3 0.10
33 12 0.40
34 15 0.50
ACGTcount: A:0.43, C:0.38, G:0.00, T:0.19
Consensus pattern (33 bp):
CTAAACCCTAAACCCAACCCCAAACTATAAACC
Found at i:91658613 original size:23 final size:21
Alignment explanation
Indices: 91658571--91658614 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
91658561 TAACCATAGT
*
91658571 CATTAAACCAAAAATTCATAA
1 CATTAAACCAAAAATACATAA
*
91658592 CATTAAACCTTAAAATAACATAA
1 CATTAAACC-AAAAAT-ACATAA
91658615 TTTTTTTGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 9 0.47
22 5 0.26
23 5 0.26
ACGTcount: A:0.57, C:0.18, G:0.00, T:0.25
Consensus pattern (21 bp):
CATTAAACCAAAAATACATAA
Found at i:91659009 original size:154 final size:153
Alignment explanation
Indices: 91658635--91659074 Score: 494
Period size: 154 Copynumber: 2.8 Consensus size: 153
91658625 GCATTTTAAT
* ** * * *
91658635 AAAAAACGCCACTAATGCTTC-ACCTATTGCGGCGTTT-CAGAAAAAACGCCGCTAATGCCCCTA
1 AAAAAACGCCACTAATTC-TCGATATATTGCTGCGTTTACAG--AAAGCGCCGCTAATGCCTCTA
* * * *
91658698 TAGCTCACCAAAAG-ACGACGTTGTTTTGCTCAAAACTTTTGTGGCGTTTTTAAATAGCCGCCGC
63 TAGCTCACC-AATGCACGACGTCGTTTTCCTCAAAACTTTTGTGGCGTTTTTAAA-AACCGCCGC
* *
91658762 TATTTGCTTCACCTTTTGTGGCATTTCAG
126 TA-ATGCTTCACCTATTGTGGCATTTCAG
* * * *
91658791 GAAAAACGCCACTAATTCTCGATATATTGCTGTGTTTACAGAAAGTGCCGCTAAAGCCTCTATAG
1 AAAAAACGCCACTAATTCTCGATATATTGCTGCGTTTACAGAAAGCGCCGCTAATGCCTCTATAG
* *
91658856 CTCACCAATGCACGACGTCGTATTT-CTCAAAACTTTTGTAGCGTTTTTAAACAACCGCCACTAA
66 CTCACCAATGCACGACGTCGT-TTTCCTCAAAACTTTTGTGGCGTTTTTAAA-AACCGCCGCTAA
* *
91658920 TGCTTCACCTATTGTGGCGTTTTAG
129 TGCTTCACCTATTGTGGCATTTCAG
* * * *
91658945 AAAAAACGCCGCTAATTCTCGATATATTGC-GCCGTTTTCAGGAAGCGCCGCTAATGCCTATATA
1 AAAAAACGCCACTAATTCTCGATATATTGCTG-CGTTTACAGAAAGCGCCGCTAATGCCTCTATA
* * * * *
91659009 GCTTACCAATACACGGCGTCGTTTTCCTCAACACTTTTGCGGCGTTTTTACAAAACCGCCGCTAA
65 GCTCACCAATGCACGACGTCGTTTTCCTCAAAACTTTTGTGGCGTTTTTA-AAAACCGCCGCTAA
91659074 T
129 T
91659075 AGCCCCCTTT
Statistics
Matches: 242, Mismatches: 35, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
153 4 0.02
154 131 0.54
155 73 0.30
156 31 0.13
157 3 0.01
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (153 bp):
AAAAAACGCCACTAATTCTCGATATATTGCTGCGTTTACAGAAAGCGCCGCTAATGCCTCTATAG
CTCACCAATGCACGACGTCGTTTTCCTCAAAACTTTTGTGGCGTTTTTAAAAACCGCCGCTAATG
CTTCACCTATTGTGGCATTTCAG
Found at i:91660575 original size:14 final size:14
Alignment explanation
Indices: 91660553--91660586 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
91660543 ACAATATCTG
*
91660553 AATAATAACAACAT
1 AATAGTAACAACAT
*
91660567 AATAGTAACAATAT
1 AATAGTAACAACAT
91660581 AATAGT
1 AATAGT
91660587 GAAATGATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.59, C:0.09, G:0.06, T:0.26
Consensus pattern (14 bp):
AATAGTAACAACAT
Done.