Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 266 of 290
Found at i:91902333 original size:16 final size:17
Alignment explanation
Indices: 91902303--91902335 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
91902293 ATTTAAATAT
91902303 AAAATATTTATTCTTTA
1 AAAATATTTATTCTTTA
91902320 AAAATATTTA-TCTTTA
1 AAAATATTTATTCTTTA
91902336 TATTGATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (17 bp):
AAAATATTTATTCTTTA
Found at i:91903305 original size:15 final size:17
Alignment explanation
Indices: 91903269--91903305 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
91903259 ATACAATAAT
91903269 AATATTTTATTTTAAGA
1 AATATTTTATTTTAAGA
*
91903286 TATATTTT-TTTTAA-A
1 AATATTTTATTTTAAGA
91903301 AATAT
1 AATAT
91903306 AATTATATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
15 5 0.28
16 6 0.33
17 7 0.39
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (17 bp):
AATATTTTATTTTAAGA
Found at i:91903906 original size:11 final size:11
Alignment explanation
Indices: 91903892--91903935 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
91903882 AGATAAATAT
91903892 TATTTTATTAA
1 TATTTTATTAA
*
91903903 TATTTTAATAA
1 TATTTTATTAA
* *
91903914 TATATTTATGAT
1 TAT-TTTATTAA
91903926 TATTTTATTA
1 TATTTTATTA
91903936 TTTTATTTAG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 19 0.70
12 8 0.30
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:91903921 original size:23 final size:22
Alignment explanation
Indices: 91903887--91903932 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
91903877 TAATTAGATA
* *
91903887 AATATTATTTTATTAATATTTT
1 AATAATATTTTATGAATATTTT
*
91903909 AATAATATATTTATGATTATTTT
1 AATAATAT-TTTATGAATATTTT
91903932 A
1 A
91903933 TTATTTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
AATAATATTTTATGAATATTTT
Found at i:91914251 original size:17 final size:17
Alignment explanation
Indices: 91914231--91914264 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
91914221 AGGTTTCGGT
91914231 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
91914248 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
91914265 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:91919978 original size:37 final size:37
Alignment explanation
Indices: 91919928--91920006 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
91919918 TTATTACGAA
* * *
91919928 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
91919965 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
91920002 GTCTT
1 GTCTT
91920007 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:91920203 original size:47 final size:47
Alignment explanation
Indices: 91920125--91920535 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
91920115 CCCTTCGGGA
* * * * * *
91920125 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
91920172 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91920219 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91920266 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91920313 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91920360 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91920407 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91920454 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
91920501 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
91920536 AGAATCCTAA
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:91940080 original size:3 final size:3
Alignment explanation
Indices: 91940062--91940112 Score: 84
Period size: 3 Copynumber: 17.0 Consensus size: 3
91940052 AAACTTTCCA
* *
91940062 TTC TTC ATC CTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
91940110 TTC
1 TTC
91940113 AGTTCATTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.63
Consensus pattern (3 bp):
TTC
Found at i:91943318 original size:9 final size:9
Alignment explanation
Indices: 91943301--91943337 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
91943291 TGAGTTTTCG
91943301 AATTCGAAT
1 AATTCGAAT
*
91943310 AACTCGAAT
1 AATTCGAAT
91943319 AATTCGAAT
1 AATTCGAAT
91943328 AATTCGAAT
1 AATTCGAAT
91943337 A
1 A
91943338 TTAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:91943528 original size:18 final size:20
Alignment explanation
Indices: 91943502--91943545 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
91943492 TACTCTCCCA
*
91943502 TTTACTTTT-TCTCAAAATT
1 TTTACTTTTCCCTCAAAATT
*
91943521 TTTA-TTTTCCCTCATAATT
1 TTTACTTTTCCCTCAAAATT
91943540 TTTACT
1 TTTACT
91943546 CCCTCCCACT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 4 0.19
19 16 0.76
20 1 0.05
ACGTcount: A:0.23, C:0.18, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTACTTTTCCCTCAAAATT
Found at i:91947298 original size:71 final size:72
Alignment explanation
Indices: 91947193--91947334 Score: 205
Period size: 71 Copynumber: 2.0 Consensus size: 72
91947183 TTGTCGTATT
* * * *
91947193 TTGGACTTTTGCTTATGTTTATTTTATTAAAATCTTGTTGTGTTGTTGTTTATTTCAACTCAAGT
1 TTGGACTATTACTTATGTTTATTTTATTAAAATCTTGTTGTATTGTTGTTTACTTCAACTCAAGT
91947258 TGTTTAC
66 TGTTTAC
* ** *
91947265 TTGGACTATTACTTATG-TTATTTTATTATAATCTTGTTGTATTGTTGTTTACTTGGACTCATGT
1 TTGGACTATTACTTATGTTTATTTTATTAAAATCTTGTTGTATTGTTGTTTACTTCAACTCAAGT
91947329 TGTTTA
66 TGTTTA
91947335 TTTAGACTGA
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
71 47 0.76
72 15 0.24
ACGTcount: A:0.20, C:0.09, G:0.15, T:0.56
Consensus pattern (72 bp):
TTGGACTATTACTTATGTTTATTTTATTAAAATCTTGTTGTATTGTTGTTTACTTCAACTCAAGT
TGTTTAC
Found at i:91950491 original size:28 final size:28
Alignment explanation
Indices: 91950451--91950504 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
91950441 ATGACAAATG
*
91950451 ATTCCGAGATGTGTTTTCGTGTAAGAGA
1 ATTCCAAGATGTGTTTTCGTGTAAGAGA
91950479 ATTCCAAGATGTGTTTTCGTGTAAGA
1 ATTCCAAGATGTGTTTTCGTGTAAGA
91950505 CCACGTCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (28 bp):
ATTCCAAGATGTGTTTTCGTGTAAGAGA
Found at i:91953503 original size:22 final size:22
Alignment explanation
Indices: 91953478--91953520 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
91953468 TAATTTTAAG
91953478 TTTA-AATTTGTACTAACTATTC
1 TTTATAATTTGT-CTAACTATTC
**
91953500 TTTATTTTTTGTCTAACTATT
1 TTTATAATTTGTCTAACTATT
91953521 GTAATACATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.26, C:0.12, G:0.05, T:0.58
Consensus pattern (22 bp):
TTTATAATTTGTCTAACTATTC
Found at i:91954574 original size:16 final size:17
Alignment explanation
Indices: 91954555--91954591 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
91954545 TTATGAAGAA
91954555 TATTATTTAAAA-TTAT
1 TATTATTTAAAATTTAT
91954571 TATT-TTTAAAATTTAT
1 TATTATTTAAAATTTAT
91954587 TATTA
1 TATTA
91954592 AAATAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTATTTAAAATTTAT
Found at i:91954759 original size:5 final size:6
Alignment explanation
Indices: 91954743--91954767 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
91954733 TAAACATTTT
91954743 TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA T
91954768 TAATATCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:91957522 original size:39 final size:39
Alignment explanation
Indices: 91957479--91957556 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
91957469 TTAAACGTTG
*
91957479 AGGTTAGCATTTGGGTTGTTGAATATGCCGAACTTGGAT
1 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
*
91957518 AGGTTAGCATTTGGGTTGTTCAATATGCCGAATTTGGAT
1 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
91957557 TTAGGGAGAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.37
Consensus pattern (39 bp):
AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
Found at i:91960847 original size:15 final size:15
Alignment explanation
Indices: 91960823--91960853 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
91960813 TAGAAATCAT
91960823 GTTGGATAGCGAAAC
1 GTTGGATAGCGAAAC
*
91960838 GTTGGGTAGCGAAAC
1 GTTGGATAGCGAAAC
91960853 G
1 G
91960854 AAATCGTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.13, G:0.39, T:0.19
Consensus pattern (15 bp):
GTTGGATAGCGAAAC
Found at i:91961119 original size:40 final size:39
Alignment explanation
Indices: 91960984--91961124 Score: 176
Period size: 39 Copynumber: 3.6 Consensus size: 39
91960974 ATAATGGAGA
* *
91960984 ATTATATCCGGGCTAAGTTCCGAAGGCATTCATGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
91961023 GTTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * * *
91961062 GTTATATCCAGGCTAAAGTCCCGTAGGC-TTTGTGCTGGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGT
91961101 ATTATATCCGGGCTTAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
91961125 CATGCTTTGT
Statistics
Matches: 90, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 68 0.76
40 22 0.24
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
Found at i:91966275 original size:25 final size:24
Alignment explanation
Indices: 91966251--91966314 Score: 67
Period size: 26 Copynumber: 2.6 Consensus size: 24
91966241 TTTAGTATAT
91966251 TATTAATTATTTTAAAAAATAATA
1 TATTAATTATTTTAAAAAATAATA
* * *
91966275 TATTATTATATTTCTTAAAAATATTA
1 TATTAAT-TATTT-TAAAAAATAATA
91966301 -ATTTAATTATTTTA
1 TA-TTAATTATTTTA
91966315 GAAACAATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
24 7 0.22
25 11 0.34
26 14 0.44
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (24 bp):
TATTAATTATTTTAAAAAATAATA
Found at i:91966277 original size:27 final size:26
Alignment explanation
Indices: 91966246--91966314 Score: 74
Period size: 25 Copynumber: 2.7 Consensus size: 26
91966236 AAATTTTTAG
91966246 TATATTATTAATTATTTTAAAAAATAA
1 TATATTATTAATTATTTTAAAAAAT-A
*
91966273 TATATTATT-A-TATTTCTTAAAAATA
1 TATATTATTAATTATTT-TAAAAAATA
*
91966298 T-TAAT-TTAATTATTTTA
1 TATATTATTAATTATTTTA
91966315 GAAACAATTC
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
23 2 0.06
24 5 0.14
25 12 0.33
26 8 0.22
27 9 0.25
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (26 bp):
TATATTATTAATTATTTTAAAAAATA
Found at i:91969842 original size:21 final size:20
Alignment explanation
Indices: 91969818--91969856 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
91969808 TTATAAATGA
*
91969818 AATTAATTTTTTTAATTTTAG
1 AATTAATTTATTT-ATTTTAG
*
91969839 AATTTATTTATTTATTTT
1 AATTAATTTATTTATTTT
91969857 GGTAGTAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (20 bp):
AATTAATTTATTTATTTTAG
Found at i:91970327 original size:5 final size:5
Alignment explanation
Indices: 91970313--91970349 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
91970303 TTCTTCTTTT
91970313 AAAA- AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAA
91970350 TTGTTAAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:91980730 original size:15 final size:17
Alignment explanation
Indices: 91980704--91980736 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
91980694 ATTTTATATG
91980704 TTAAATTATTATG-AAT
1 TTAAATTATTATGTAAT
91980720 TTAAATT-TTATGTAAT
1 TTAAATTATTATGTAAT
91980736 T
1 T
91980737 AATAAAGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
TTAAATTATTATGTAAT
Found at i:91981378 original size:22 final size:22
Alignment explanation
Indices: 91981339--91981389 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
91981329 TTAATAATAT
*
91981339 TCTAAAATCCTAAACTTGAAAC
1 TCTAAAATCATAAACTTGAAAC
* * *
91981361 TCTAAAATTATAATCTTGGAAC
1 TCTAAAATCATAAACTTGAAAC
*
91981383 CCTAAAA
1 TCTAAAA
91981390 CTTAGTCCAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.45, C:0.20, G:0.06, T:0.29
Consensus pattern (22 bp):
TCTAAAATCATAAACTTGAAAC
Found at i:91987383 original size:27 final size:27
Alignment explanation
Indices: 91987335--91987439 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
91987325 GCGAGGCTGC
* *
91987335 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
91987362 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
91987388 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
91987415 CAGATAATTGTGGCATAGGCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
91987440 GGCGCTTCCT
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
26 8 0.11
27 59 0.84
28 3 0.04
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:91989092 original size:26 final size:26
Alignment explanation
Indices: 91989061--91989168 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
91989051 TGAAATTCCC
*
91989061 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
91989087 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
91989113 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
91989139 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
91989165 ATCA
1 ATCA
91989169 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:91991859 original size:20 final size:21
Alignment explanation
Indices: 91991829--91991881 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
91991819 TGATACCAAA
*
91991829 AAATGTATCGATAATTT-TTT
1 AAATTTATCGATAATTTATTT
*
91991849 GAATTTATCGAT-ATTTATTT
1 AAATTTATCGATAATTTATTT
91991869 AAATTTATCGATA
1 AAATTTATCGATA
91991882 CTTGACAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 4 0.14
20 24 0.86
ACGTcount: A:0.36, C:0.06, G:0.09, T:0.49
Consensus pattern (21 bp):
AAATTTATCGATAATTTATTT
Found at i:92001306 original size:76 final size:76
Alignment explanation
Indices: 92001173--92001322 Score: 257
Period size: 76 Copynumber: 2.0 Consensus size: 76
92001163 ACCATCTCCG
*
92001173 TCCAACCTTACACCTCATGTGGGGATATAATCGACCCACCCATCCCTGCATTCCAATTAGGACGT
1 TCCAACCTTACACCTCATGTGGGGATATAATCGACCCACCCATCCCTGCATTCCAATTAGGACCT
92001238 CGAAAAGCCAA
66 CGAAAAGCCAA
*
92001249 TCCAACCTTACACCTCATGTGGGGATATAATCGACCTACCCATCCCTGCACTT-CAATTAGGACC
1 TCCAACCTTACACCTCATGTGGGGATATAATCGACCCACCCATCCCTGCA-TTCCAATTAGGACC
*
92001313 TGGAAAAGCC
65 TCGAAAAGCC
92001323 TATTCCTTAT
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
76 68 0.97
77 2 0.03
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.22
Consensus pattern (76 bp):
TCCAACCTTACACCTCATGTGGGGATATAATCGACCCACCCATCCCTGCATTCCAATTAGGACCT
CGAAAAGCCAA
Found at i:92011895 original size:40 final size:40
Alignment explanation
Indices: 92011851--92012112 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
92011841 GCTCCTCGTT
* *
92011851 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
92011891 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
92011931 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
92011970 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
92012009 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
92012048 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
92012089 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
92012113 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:92013209 original size:14 final size:14
Alignment explanation
Indices: 92013190--92013216 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
92013180 AGGATGAGCA
92013190 TTTTTTTTTCTTTG
1 TTTTTTTTTCTTTG
92013204 TTTTTTTTTCTTT
1 TTTTTTTTTCTTT
92013217 CTAGTTTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.04, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTCTTTG
Found at i:92018906 original size:37 final size:37
Alignment explanation
Indices: 92018842--92018915 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
92018832 TTACAAGCCA
92018842 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
92018879 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
92018916 GACATCGATC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
36 4 0.12
37 28 0.85
38 1 0.03
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:92023846 original size:31 final size:31
Alignment explanation
Indices: 92023803--92023948 Score: 267
Period size: 31 Copynumber: 4.7 Consensus size: 31
92023793 TTAGTCTTGA
*
92023803 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
92023833 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
92023864 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
92023895 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
92023926 CATATCATTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
92023949 ACTGTAAACG
Statistics
Matches: 113, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
30 5 0.04
31 108 0.96
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:92024019 original size:42 final size:42
Alignment explanation
Indices: 92023972--92024105 Score: 259
Period size: 42 Copynumber: 3.2 Consensus size: 42
92023962 TGGCCCTTAG
*
92023972 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
92024014 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
92024056 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
92024098 GCCCATTT
1 GCCCATTT
92024106 GGGGAGACTA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:92024281 original size:25 final size:25
Alignment explanation
Indices: 92024253--92024322 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
92024243 CTCTTTTAAT
*
92024253 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
92024278 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
92024303 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
92024323 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:92025279 original size:27 final size:27
Alignment explanation
Indices: 92025249--92025356 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
92025239 GTAAATCTAC
92025249 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
92025276 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
92025302 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
92025332 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
92025357 ACAAATTNNN
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.01
27 41 0.60
28 7 0.10
29 18 0.26
30 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:92027343 original size:27 final size:27
Alignment explanation
Indices: 92027302--92027386 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
92027292 NNNNNNNNNN
** * *
92027302 AGGGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
*
92027329 AGGGTGAAACGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* *
92027356 AGGGTAAAATGGTAATTCTACAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
92027383 AGGG
1 AGGG
92027387 CATTTCAATA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.27
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTATAAATCG
Found at i:92033310 original size:340 final size:340
Alignment explanation
Indices: 92032690--92033372 Score: 1314
Period size: 340 Copynumber: 2.0 Consensus size: 340
92032680 TATCACTATT
*
92032690 ATAAAGCTATCTCATAATAATTCATATATAAAAAATTCCAGATATTCCATATAGTTCATACGGAC
1 ATAAAGCTATCTCATAACAATTCATATATAAAAAATTCCAGATATTCCATATAGTTCATACGGAC
92032755 TTTCAAACGTTATAACTCAGTCGGATTAAACTCAAATATATTATTTCCATGCTTAATCATAATCG
66 TTTCAAACGTTATAACTCAGTCGGATTAAACTCAAATATATTATTTCCATGCTTAATCATAATCG
*
92032820 ACTAACTCTACTATAAATCTATGAATTCCAAATCAGCATATTAACTCATACATAATTAGAATTAA
131 ACAAACTCTACTATAAATCTATGAATTCCAAATCAGCATATTAACTCATACATAATTAGAATTAA
92032885 CGATATCTATTTGCTTATAAACTTACCTCGGACGTTGAAAAATTGATACGGGTTGACTAGTCGAC
196 CGATATCTATTTGCTTATAAACTTACCTCGGACGTTGAAAAATTGATACGGGTTGACTAGTCGAC
92032950 AATTTTAGTTTTCCCCCGATCTAAATCTGATTTTCTCTTTTCTTGATCTAAATTAATACAAATTA
261 AATTTTAGTTTTCCCCCGATCTAAATCTGATTTTCTCTTTTCTTGATCTAAATTAATACAAATTA
92033015 AACTTATTAAATCAA
326 AACTTATTAAATCAA
*
92033030 ATAAAGCTGTCTCATAACAATTCATATATAAAAAATTCCAGATATTCCATATAGTTCATACGGAC
1 ATAAAGCTATCTCATAACAATTCATATATAAAAAATTCCAGATATTCCATATAGTTCATACGGAC
92033095 TTTCAAACGTTATAACTCAGTCGGATTAAACTCAAATATATTATTTCCATGCTTAATCATAA-CT
66 TTTCAAACGTTATAACTCAGTCGGATTAAACTCAAATATATTATTTCCATGCTTAATCATAATC-
*
92033159 GGCAAACTCTACTATAAATCTATGAATTCCAAATCAGCATATTAACTCATACATAATTAGAATTA
130 GACAAACTCTACTATAAATCTATGAATTCCAAATCAGCATATTAACTCATACATAATTAGAATTA
92033224 ACGATATCTATTTGCTTATAAACTTACCTCGGACGTTGAAAAATTGATACGGGTTGACTAGTCGA
195 ACGATATCTATTTGCTTATAAACTTACCTCGGACGTTGAAAAATTGATACGGGTTGACTAGTCGA
92033289 CAATTTTAGTTTTCCCCCGATCTAAATCTGATTTTCTCTTTTCTTGATCTAAATTAATACAAATT
260 CAATTTTAGTTTTCCCCCGATCTAAATCTGATTTTCTCTTTTCTTGATCTAAATTAATACAAATT
92033354 AAACTTATTAAATCAA
325 AAACTTATTAAATCAA
92033370 ATA
1 ATA
92033373 TTCAACCAAA
Statistics
Matches: 338, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
339 1 0.00
340 337 1.00
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (340 bp):
ATAAAGCTATCTCATAACAATTCATATATAAAAAATTCCAGATATTCCATATAGTTCATACGGAC
TTTCAAACGTTATAACTCAGTCGGATTAAACTCAAATATATTATTTCCATGCTTAATCATAATCG
ACAAACTCTACTATAAATCTATGAATTCCAAATCAGCATATTAACTCATACATAATTAGAATTAA
CGATATCTATTTGCTTATAAACTTACCTCGGACGTTGAAAAATTGATACGGGTTGACTAGTCGAC
AATTTTAGTTTTCCCCCGATCTAAATCTGATTTTCTCTTTTCTTGATCTAAATTAATACAAATTA
AACTTATTAAATCAA
Found at i:92033572 original size:29 final size:28
Alignment explanation
Indices: 92033535--92033594 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
92033525 TAGTCCATAT
*
92033535 ATTTCATTTATTTCACATTTTAGTCCCTCA
1 ATTTCATTTATTTCACAATTTAG-CCCT-A
* *
92033565 ATTT-ATTTTTTTTACAATTTAGCCCTA
1 ATTTCATTTATTTCACAATTTAGCCCTA
92033592 ATT
1 ATT
92033595 ACTCAAATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 4 0.15
28 4 0.15
29 15 0.56
30 4 0.15
ACGTcount: A:0.25, C:0.18, G:0.03, T:0.53
Consensus pattern (28 bp):
ATTTCATTTATTTCACAATTTAGCCCTA
Found at i:92035353 original size:57 final size:58
Alignment explanation
Indices: 92035234--92035379 Score: 170
Period size: 57 Copynumber: 2.5 Consensus size: 58
92035224 GTTGCTGATG
* * * * **
92035234 GGATTTAGCCTAGACCGGTAATCCTGATATAATCCCTCTCGAGCATATATTACAATTA
1 GGATTTAGCCTGGACTGGTAATCCTAATATAATCCCTCTCGAGCAGATATTACAAAAA
* *
92035292 GGATTTAGCCTGGACTGGTAATCCTAAT-TGATCTCT-TCTGAGCAGATATTACAAAAA
1 GGATTTAGCCTGGACTGGTAATCCTAATATAATCCCTCTC-GAGCAGATATTACAAAAA
* * *
92035349 GGATTTAGCCTGCACTAGTAATCCTATTATA
1 GGATTTAGCCTGGACTGGTAATCCTAATATA
92035380 TGTTATGAGG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
56 2 0.03
57 46 0.62
58 26 0.35
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (58 bp):
GGATTTAGCCTGGACTGGTAATCCTAATATAATCCCTCTCGAGCAGATATTACAAAAA
Found at i:92037315 original size:20 final size:20
Alignment explanation
Indices: 92037286--92037350 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 20
92037276 AATTATGTAA
92037286 TCTGAATTCATTGAGTTGTG
1 TCTGAATTCATTGAGTTGTG
* *
92037306 TCTGAGTTCA-TGATATATGTGG
1 TCTGAATTCATTGA-GT-TGT-G
92037328 CATCTGAATTCATTGAGTTGTG
1 --TCTGAATTCATTGAGTTGTG
92037350 T
1 T
92037351 TTGAGTTAGT
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
19 3 0.09
20 11 0.31
21 3 0.09
22 2 0.06
23 3 0.09
24 10 0.29
25 3 0.09
ACGTcount: A:0.22, C:0.11, G:0.25, T:0.43
Consensus pattern (20 bp):
TCTGAATTCATTGAGTTGTG
Found at i:92052691 original size:57 final size:57
Alignment explanation
Indices: 92052558--92052703 Score: 152
Period size: 57 Copynumber: 2.5 Consensus size: 57
92052548 GTTGCTGATG
* * **
92052558 GGATTTAGCCTGGACTGGTAATCCTATTATAATCCCTCTCGAACATATGTTACAATTA
1 GGATTTA-CCTGGACTGGTAATCCTAATATAATCCCTCTCGAACATATATTACAAAAA
* * * * *
92052616 GGATTTAGCTTGAGCTGGTAATCCTAAT-TGATCTCT-TCTGAGCATATATTACAAAAA
1 GGATTTACCTGGA-CTGGTAATCCTAATATAATCCCTCTC-GAACATATATTACAAAAA
*
92052673 GGATTTATCCTGGACTGGTAATCCTATTATA
1 GGATTTA-CCTGGACTGGTAATCCTAATATA
92052704 TGTTATGAGG
Statistics
Matches: 71, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
56 2 0.03
57 44 0.62
58 25 0.35
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (57 bp):
GGATTTACCTGGACTGGTAATCCTAATATAATCCCTCTCGAACATATATTACAAAAA
Found at i:92057442 original size:86 final size:86
Alignment explanation
Indices: 92057307--92057498 Score: 237
Period size: 86 Copynumber: 2.2 Consensus size: 86
92057297 TGAGATATCG
* * *
92057307 TGTAAGACCCTTTCTAGGACAGTAGCAGCTATATATAATTTTGTGTAAGACCAC-GTCTGGGATA
1 TGTAAGACCATGTCTAGGACAGTAGCAGCTATATATAATTTCGTGTAAGACC-CTGTCTGGGATA
* *
92057371 TTGGCATCGAT-TTGAGATTTACA
65 GTGGCATCAATATT-AGA-TTACA
* * * *
92057394 TGTAAGACCATGTCTGGGACATTAGCATC-ATATTTAATTTCGTGTAAGACCCTGTCTGGGATAG
1 TGTAAGACCATGTCTAGGACAGTAGCAGCTATATATAATTTCGTGTAAGACCCTGTCTGGGATAG
*
92057458 TGGCATCAATATTTGATTACA
66 TGGCATCAATATTAGATTACA
*
92057479 TGTAAGACCACGTCTAGGAC
1 TGTAAGACCATGTCTAGGAC
92057499 GTTGGCATTG
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
85 24 0.26
86 41 0.45
87 26 0.29
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (86 bp):
TGTAAGACCATGTCTAGGACAGTAGCAGCTATATATAATTTCGTGTAAGACCCTGTCTGGGATAG
TGGCATCAATATTAGATTACA
Found at i:92057505 original size:43 final size:42
Alignment explanation
Indices: 92057350--92057506 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 42
92057340 TATAATTTTG
* *
92057350 TGTAAGACCACGTCTGGGATATTGGCATCGAT-TTGAGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATC-ATATT-TGA-TTACA
* * * * *
92057394 TGTAAGACCATGTCTGGGACATTAGCATCATATTTAATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTACA
* *
92057436 TGTAAGACC-CTGTCTGGGATAGTGGCATCAATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATC-ATATTTGATTACA
* *
92057479 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
92057507 TGTACGAGTT
Statistics
Matches: 91, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
42 27 0.30
43 35 0.38
44 29 0.32
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTACA
Found at i:92060558 original size:12 final size:13
Alignment explanation
Indices: 92060535--92060564 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
92060525 TCTGCGAGTG
92060535 AAATGCGGTACTA
1 AAATGCGGTACTA
92060548 AAATG-GGTACTA
1 AAATGCGGTACTA
92060560 AAATG
1 AAATG
92060565 TAGTTTTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.43, C:0.10, G:0.23, T:0.23
Consensus pattern (13 bp):
AAATGCGGTACTA
Found at i:92064350 original size:2 final size:2
Alignment explanation
Indices: 92064343--92064372 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
92064333 CATTCCGAAG
*
92064343 TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
92064373 CATAAGTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:92064989 original size:27 final size:28
Alignment explanation
Indices: 92064823--92064976 Score: 247
Period size: 28 Copynumber: 5.5 Consensus size: 28
92064813 CATGAGATTG
* * * *
92064823 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
92064852 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
92064880 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
92064908 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
92064936 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
92064963 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
92064977 GACTTAATAT
Statistics
Matches: 120, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
27 24 0.20
28 78 0.65
29 18 0.15
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:92067031 original size:13 final size:15
Alignment explanation
Indices: 92067013--92067044 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
92067003 TTTACTCATC
92067013 AATCTCTT-CCTC-G
1 AATCTCTTACCTCTG
92067026 AATCTCTTACCTCTG
1 AATCTCTTACCTCTG
92067041 AATC
1 AATC
92067045 AGCCTTTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.22, C:0.34, G:0.06, T:0.38
Consensus pattern (15 bp):
AATCTCTTACCTCTG
Found at i:92068031 original size:89 final size:88
Alignment explanation
Indices: 92067880--92068059 Score: 324
Period size: 89 Copynumber: 2.0 Consensus size: 88
92067870 CGTAGCTCTA
* *
92067880 ATACCAATTAAATGAAACACCCCTAACCCGTATCTGTCGTCAGAATAGGGTTACGAGGCATTACT
1 ATACCAATTAAATGAAACACCCCTAACCCGTATCTGTCGTCAAAATAGGGTTACGAGGCATTACC
92067945 GATCAATACACATCATCCATATAC
66 GATCAATACACAT-ATCCATATAC
92067969 ATACCAATTAAATGAAACACCCCTAACCCGTATCTGTCGTCAAAATAGGGTTACGAGGCATTACC
1 ATACCAATTAAATGAAACACCCCTAACCCGTATCTGTCGTCAAAATAGGGTTACGAGGCATTACC
*
92068034 GATCAATACACATATTCATATAC
66 GATCAATACACATATCCATATAC
92068057 ATA
1 ATA
92068060 ACATATTCAT
Statistics
Matches: 88, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
88 12 0.14
89 76 0.86
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.25
Consensus pattern (88 bp):
ATACCAATTAAATGAAACACCCCTAACCCGTATCTGTCGTCAAAATAGGGTTACGAGGCATTACC
GATCAATACACATATCCATATAC
Found at i:92070967 original size:40 final size:40
Alignment explanation
Indices: 92070916--92071020 Score: 97
Period size: 42 Copynumber: 2.6 Consensus size: 40
92070906 CTTAGTGTCA
* *
92070916 CACACTTAGTGCCACATATAGTCAAAGCTAT-TC-AAATTCG
1 CACACTAAGTGCCAAATATAGTCAAAGCTATCTCGAAA--CG
* * * *
92070956 CACACTAAGTGCTATATATAAAGCCGAAGCTATCTCGAAACG
1 CACACTAAGTGCCA-A-ATATAGTCAAAGCTATCTCGAAACG
*
92070998 CACACTAAGTGCCAAACATAGTC
1 CACACTAAGTGCCAAATATAGTC
92071021 GATTTGTCAT
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
40 17 0.33
41 1 0.02
42 28 0.55
43 2 0.04
44 3 0.06
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (40 bp):
CACACTAAGTGCCAAATATAGTCAAAGCTATCTCGAAACG
Found at i:92074154 original size:21 final size:22
Alignment explanation
Indices: 92074120--92074163 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
92074110 TATACATTCA
*
92074120 AAATTAATCCATTTAAT-CACC
1 AAATTAATCAATTTAATCCACC
* *
92074141 AAATTATTCAATTTCATCCACC
1 AAATTAATCAATTTAATCCACC
92074163 A
1 A
92074164 GCACATATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.41, C:0.25, G:0.00, T:0.34
Consensus pattern (22 bp):
AAATTAATCAATTTAATCCACC
Found at i:92079704 original size:31 final size:31
Alignment explanation
Indices: 92079666--92079729 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
92079656 TACGCTTCGA
92079666 TGGTGGACAATGCAACACTATTCTATTTCTT
1 TGGTGGACAATGCAACACTATTCTATTTCTT
**
92079697 TGGTGGACAATGTTACACTATTCTATTTCTT
1 TGGTGGACAATGCAACACTATTCTATTTCTT
92079728 TG
1 TG
92079730 AAAACCATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.42
Consensus pattern (31 bp):
TGGTGGACAATGCAACACTATTCTATTTCTT
Found at i:92082083 original size:49 final size:49
Alignment explanation
Indices: 92082011--92082108 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
92082001 TGATTTATGC
*
92082011 ATGTCATCTAAATGCACCATGTAAATATTTCCTATTTTATATCCTACAA
1 ATGTCATCTAAACGCACCATGTAAATATTTCCTATTTTATATCCTACAA
92082060 ATGTCATCTAAACGCACCATGTAAATATTTCCTATTTTATATCCTACAA
1 ATGTCATCTAAACGCACCATGTAAATATTTCCTATTTTATATCCTACAA
92082109 GCATAATCTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (49 bp):
ATGTCATCTAAACGCACCATGTAAATATTTCCTATTTTATATCCTACAA
Found at i:92091907 original size:20 final size:22
Alignment explanation
Indices: 92091874--92091914 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
92091864 AAAGTGATAA
*
92091874 AAAAGTACAGAAAAA-AAAAAG
1 AAAAGTACAAAAAAATAAAAAG
92091895 AAAA-TACAAAAAAATAAAAA
1 AAAAGTACAAAAAAATAAAAA
92091915 TAAATATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.80, C:0.05, G:0.07, T:0.07
Consensus pattern (22 bp):
AAAAGTACAAAAAAATAAAAAG
Found at i:92099661 original size:2 final size:2
Alignment explanation
Indices: 92099649--92099684 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
92099639 AAAATCAAAG
*
92099649 GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
92099685 AATCAAAATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Found at i:92100100 original size:18 final size:17
Alignment explanation
Indices: 92100059--92100100 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
92100049 AATATGAAAA
92100059 ACAAAATATAATAACTC
1 ACAAAATATAATAACTC
92100076 ACTAAAATAT-ATACACTAC
1 AC-AAAATATAATA-ACT-C
92100095 ACAAAA
1 ACAAAA
92100101 AACCCAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 5 0.23
18 14 0.64
19 3 0.14
ACGTcount: A:0.60, C:0.19, G:0.00, T:0.21
Consensus pattern (17 bp):
ACAAAATATAATAACTC
Found at i:92109948 original size:25 final size:25
Alignment explanation
Indices: 92109913--92109968 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
92109903 TTTATTTTCA
*
92109913 AATAATTTAAGTCAAAGTTTA-TAAT
1 AATAAATTAAGT-AAAGTTTATTAAT
* *
92109938 TATAAATTAAGTAAATTTTATTAAT
1 AATAAATTAAGTAAAGTTTATTAAT
92109963 AATAAA
1 AATAAA
92109969 AATAAATTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 7 0.27
25 19 0.73
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.41
Consensus pattern (25 bp):
AATAAATTAAGTAAAGTTTATTAAT
Found at i:92128046 original size:10 final size:10
Alignment explanation
Indices: 92128031--92128055 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
92128021 TTTATTTATT
92128031 AAATTAATTA
1 AAATTAATTA
92128041 AAATTAATTA
1 AAATTAATTA
92128051 AAATT
1 AAATT
92128056 TCCAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
AAATTAATTA
Found at i:92128904 original size:16 final size:17
Alignment explanation
Indices: 92128871--92128912 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
92128861 ACGGAACTAA
92128871 AATTAGATTAAGAAAATT
1 AATTA-ATTAAGAAAATT
*
92128889 ATTTAATTAA-AAAATT
1 AATTAATTAAGAAAATT
92128905 AATTAATT
1 AATTAATT
92128913 GATTAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 13 0.59
17 5 0.23
18 4 0.18
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (17 bp):
AATTAATTAAGAAAATT
Found at i:92135675 original size:50 final size:50
Alignment explanation
Indices: 92135620--92135720 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
92135610 TGTTTGTCTA
92135620 TTCATCCGGGCAGTACGAAAATGTGTCATGATTTGAAGAGGTTGTATTGG
1 TTCATCCGGGCAGTACGAAAATGTGTCATGATTTGAAGAGGTTGTATTGG
*
92135670 TTCATCTGGGCAGTACGAAAATGTGTCATGATTTGAAGAGGTTGTATTGG
1 TTCATCCGGGCAGTACGAAAATGTGTCATGATTTGAAGAGGTTGTATTGG
92135720 T
1 T
92135721 GGTCGGGCAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.26, C:0.11, G:0.30, T:0.34
Consensus pattern (50 bp):
TTCATCCGGGCAGTACGAAAATGTGTCATGATTTGAAGAGGTTGTATTGG
Found at i:92145261 original size:20 final size:20
Alignment explanation
Indices: 92145236--92145276 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
92145226 TAAGGTAGCG
92145236 TTGGCTACATATGGGGCACT
1 TTGGCTACATATGGGGCACT
92145256 TTGGCTACATATGGGGCACT
1 TTGGCTACATATGGGGCACT
92145276 T
1 T
92145277 ATGTGCAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.32
Consensus pattern (20 bp):
TTGGCTACATATGGGGCACT
Found at i:92150882 original size:26 final size:26
Alignment explanation
Indices: 92150853--92150936 Score: 107
Period size: 26 Copynumber: 3.2 Consensus size: 26
92150843 CCAACGCACC
92150853 AATATCGCAGCAAATG-TGCCAGTAAT
1 AATATCGCAGCAAA-GCTGCCAGTAAT
* *
92150879 AATATCGCAACAAAGCTGCCAGTAAC
1 AATATCGCAGCAAAGCTGCCAGTAAT
* * *
92150905 AGTAACGCAGCAGAGCTGCCAGTAAT
1 AATATCGCAGCAAAGCTGCCAGTAAT
92150931 AATATC
1 AATATC
92150937 AGTATATGAC
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
25 1 0.02
26 47 0.98
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.19
Consensus pattern (26 bp):
AATATCGCAGCAAAGCTGCCAGTAAT
Found at i:92151037 original size:20 final size:20
Alignment explanation
Indices: 92150946--92151042 Score: 104
Period size: 20 Copynumber: 4.8 Consensus size: 20
92150936 CAGTATATGA
*
92150946 CACAAAGCCATGAGTAGCGG
1 CACAAAGCCATCAGTAGCGG
* * *
92150966 CACGAAGCCGTCAGTAGCGA
1 CACAAAGCCATCAGTAGCGG
* * *
92150986 CACAAAGCCATTAATAGTGG
1 CACAAAGCCATCAGTAGCGG
* *
92151006 CCCAAAGACATCAGTAGCGG
1 CACAAAGCCATCAGTAGCGG
*
92151026 CATAAAGCCATCAGTAG
1 CACAAAGCCATCAGTAG
92151043 GTCCACAGTT
Statistics
Matches: 59, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.36, C:0.26, G:0.25, T:0.13
Consensus pattern (20 bp):
CACAAAGCCATCAGTAGCGG
Found at i:92155059 original size:24 final size:24
Alignment explanation
Indices: 92155002--92155059 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
92154992 TAAATGAGTC
* *
92155002 ATAAACAAGTCAATAAACAAGCTT
1 ATAAACGAGCCAATAAACAAGCTT
* *
92155026 ATAAGCGAGCCAATAAATAAGCTT
1 ATAAACGAGCCAATAAACAAGCTT
* *
92155050 TTAAATGAGC
1 ATAAACGAGC
92155060 TTGTTCGTGA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.48, C:0.16, G:0.14, T:0.22
Consensus pattern (24 bp):
ATAAACGAGCCAATAAACAAGCTT
Found at i:92157417 original size:24 final size:24
Alignment explanation
Indices: 92157360--92157417 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
92157350 TAAATGAGTC
* *
92157360 ATAAACAAGTCAATAAACAAGCTT
1 ATAAACGAGCCAATAAACAAGCTT
* *
92157384 ATAAGCGAGCCAATAAATAAGCTT
1 ATAAACGAGCCAATAAACAAGCTT
* *
92157408 TTAAATGAGC
1 ATAAACGAGC
92157418 TTGTTCGTGA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.48, C:0.16, G:0.14, T:0.22
Consensus pattern (24 bp):
ATAAACGAGCCAATAAACAAGCTT
Found at i:92161380 original size:3 final size:3
Alignment explanation
Indices: 92161372--92161409 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
92161362 TTTACTCAAC
92161372 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
92161410 TTTGCTAGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:92171043 original size:39 final size:39
Alignment explanation
Indices: 92170989--92171063 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
92170979 GAGAAAAAGC
92170989 CGAACCTTGAGGAGATGATGACAAAGTTTATTTTAGAGT
1 CGAACCTTGAGGAGATGATGACAAAGTTTATTTTAGAGT
92171028 CGAACCTTGAGGAGATGATGACAAAGTTTATTTTAG
1 CGAACCTTGAGGAGATGATGACAAAGTTTATTTTAG
92171064 TAGCGGAAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (39 bp):
CGAACCTTGAGGAGATGATGACAAAGTTTATTTTAGAGT
Found at i:92176098 original size:37 final size:36
Alignment explanation
Indices: 92176047--92176121 Score: 123
Period size: 37 Copynumber: 2.1 Consensus size: 36
92176037 ACCGTGTAGC
92176047 TTAAAACAGGGCCTACACGACCGCGGCCCCCTTTTA
1 TTAAAACAGGGCCTACACGACCGCGGCCCCCTTTTA
* *
92176083 TNTAAAACAGGGCCTACACGCCCGTGGCCCCCTTTTA
1 T-TAAAACAGGGCCTACACGACCGCGGCCCCCTTTTA
92176120 TT
1 TT
92176122 TCCCCTAATC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 2 0.06
37 34 0.94
ACGTcount: A:0.23, C:0.35, G:0.19, T:0.23
Consensus pattern (36 bp):
TTAAAACAGGGCCTACACGACCGCGGCCCCCTTTTA
Found at i:92176225 original size:11 final size:10
Alignment explanation
Indices: 92176198--92176222 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
92176188 TTTCTCCTTC
92176198 CTTTTCTTTA
1 CTTTTCTTTA
92176208 CTTTTCTTTA
1 CTTTTCTTTA
92176218 CTTTT
1 CTTTT
92176223 TCTCTTTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (10 bp):
CTTTTCTTTA
Found at i:92176316 original size:30 final size:28
Alignment explanation
Indices: 92176272--92176329 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 28
92176262 TTTACCCCCA
*
92176272 TCTTTTTTCTCCATTTTTCTTTCTCCCTTC
1 TCTTTTTTCTCCATTCTT-TTTC-CCCTTC
92176302 TCTTATTTTC-CCATTCTTTTTCCCCTTC
1 TCTT-TTTTCTCCATTCTTTTTCCCCTTC
92176330 CCCTCCGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 6 0.23
29 4 0.15
30 11 0.42
31 5 0.19
ACGTcount: A:0.05, C:0.34, G:0.00, T:0.60
Consensus pattern (28 bp):
TCTTTTTTCTCCATTCTTTTTCCCCTTC
Found at i:92186320 original size:11 final size:11
Alignment explanation
Indices: 92186306--92186354 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
92186296 TTTCAATATT
92186306 CTCTCAAATTC
1 CTCTCAAATTC
92186317 CTCTCAAA-T-
1 CTCTCAAATTC
*
92186326 CTCTC-AATTT
1 CTCTCAAATTC
*
92186336 CTCTTAAATTC
1 CTCTCAAATTC
92186347 CTCTCAAA
1 CTCTCAAA
92186355 ACTCTCGTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
8 2 0.06
9 6 0.19
10 5 0.16
11 19 0.59
ACGTcount: A:0.29, C:0.33, G:0.00, T:0.39
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:92186330 original size:20 final size:21
Alignment explanation
Indices: 92186298--92186354 Score: 64
Period size: 19 Copynumber: 2.7 Consensus size: 21
92186288 CTTCAATCTT
92186298 TCAATATTCTCTCAAATTCCTC
1 TCAA-ATTCTCTCAAATTCCTC
*
92186320 TCAAA-TCTCTC-AATTTCTC
1 TCAAATTCTCTCAAATTCCTC
*
92186339 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
92186355 ACTCTCGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 11 0.37
20 7 0.23
21 6 0.20
22 6 0.20
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.40
Consensus pattern (21 bp):
TCAAATTCTCTCAAATTCCTC
Found at i:92186345 original size:30 final size:31
Alignment explanation
Indices: 92186292--92186360 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 31
92186282 TTCAATCTTC
*
92186292 AATCTTTCAATATTCTCTCAAATTCCTCTCA
1 AATCTCTCAATATTCTCTCAAATTCCTCTCA
*
92186323 AATCTCTCAAT-TTCTCTTAAATTCCTCTCA
1 AATCTCTCAATATTCTCTCAAATTCCTCTCA
*
92186353 AAACTCTC
1 AATCTCTC
92186361 GTTAATTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 25 0.71
31 10 0.29
ACGTcount: A:0.29, C:0.30, G:0.00, T:0.41
Consensus pattern (31 bp):
AATCTCTCAATATTCTCTCAAATTCCTCTCA
Found at i:92188821 original size:117 final size:116
Alignment explanation
Indices: 92188560--92188942 Score: 642
Period size: 117 Copynumber: 3.3 Consensus size: 116
92188550 TATTTGTACA
*
92188560 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
92188625 TATAATTTAC-TTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
92188675 AAAATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
92188740 TGTAATTCACTTTTATATTTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TATAATTTACTTTTATA-TTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* * *
92188792 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* ** *
92188857 TATAATTTACTTTTACATTTTTAATAAAATAAAAATTATTTTAAATAAAGC
66 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
92188908 AATATTTTGAATATTTTTATATTATTTCATGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAAT
92188943 AAAATATAAA
Statistics
Matches: 250, Mismatches: 16, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
115 71 0.28
116 70 0.28
117 109 0.44
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:92192176 original size:126 final size:126
Alignment explanation
Indices: 92191957--92192744 Score: 1287
Period size: 126 Copynumber: 6.3 Consensus size: 126
92191947 TTTAGAAACC
* *
92191957 ACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAATGCATCCTGCT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCT
* *** * * *
92192022 TGAAGC-GTTTTTGACATTATTTATGCAGACACGTCTTCTCAAAATTATTTTTTTAAAGACC
66 TGAAGCAGTTTTT-ACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAAATACT
* * * * *
92192083 ACTGTAGCAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAATGCATCCTGCT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCT
* *
92192148 TGAAGC-GTTTTTACCACTATTTGCGCAGACACGTCTTCTCAAAATTATTTTTTCAAAGACT
66 TGAAGCAGTTTTTA-CACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAAATACT
92192209 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCT
* *
92192274 TGAAGCATTTTTTACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGATACT
66 TGAAGCAGTTTTTACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAAATACT
92192335 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCT
* *
92192400 TGAAGCATTTTTTACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGATACT
66 TGAAGCAGTTTTTACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAAATACT
92192461 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCT
* *
92192526 TGAAGCATTTTTTACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAGATACT
66 TGAAGCAGTTTTTACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAAATACT
92192587 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCT
* *
92192652 TGAAGC-GTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAATTTATTTTTTCAGAA-ACT
66 TGAAGCAGTTTTT-ACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCA-AATACT
*
92192713 ACTGTAGCAAAAGAGCGTCCACGTAGAAGCTT
1 ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTT
92192745 TTTTAGATTA
Statistics
Matches: 636, Mismatches: 22, Indels: 8
0.95 0.03 0.01
Matches are distributed among these distances:
125 6 0.01
126 623 0.98
127 7 0.01
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (126 bp):
ACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGCT
TGAAGCAGTTTTTACACTATTTGCACAGACACGTCTTCTCAAAATTATTTTTTCAAATACT
Found at i:92192971 original size:97 final size:99
Alignment explanation
Indices: 92192846--92193023 Score: 265
Period size: 97 Copynumber: 1.8 Consensus size: 99
92192836 CCTAAAATCC
* *
92192846 TAATCTAATTTTTTTATAAATTTATAATTAATTTACTCAA-ATAACCCTAAACCCTAATTTATTT
1 TAATCTAATTTTTTTATAAATTTATAATTAATTTAATCAACA-AACACTAAACCCTAATTTATTT
*
92192910 GA-TTTTTTCCTTAAAAACCATAAACACTAAACCA
65 AATTTTTTTCCTTAAAAACCATAAACACTAAACCA
* *
92192944 TAATCTAATTTTTTTA-AAA-TTAGTAATTAATTTAATTAACAAACACTAAACCTTAATTTATTT
1 TAATCTAATTTTTTTATAAATTTA-TAATTAATTTAATCAACAAACACTAAACCCTAATTTATTT
92193007 AATTTTTTTCCTTAAAA
65 AATTTTTTTCCTTAAAA
92193024 CCTTAAAATT
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
96 3 0.04
97 38 0.53
98 31 0.43
ACGTcount: A:0.41, C:0.14, G:0.01, T:0.44
Consensus pattern (99 bp):
TAATCTAATTTTTTTATAAATTTATAATTAATTTAATCAACAAACACTAAACCCTAATTTATTTA
ATTTTTTTCCTTAAAAACCATAAACACTAAACCA
Found at i:92193041 original size:16 final size:17
Alignment explanation
Indices: 92193020--92193061 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
92193010 TTTTTTCCTT
92193020 AAAACCTTAAAA-TTTA
1 AAAACCTTAAAATTTTA
*
92193036 AAAACC-TAAAATTTTC
1 AAAACCTTAAAATTTTA
92193052 AAAACCTTAA
1 AAAACCTTAA
92193062 CCCTAATTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 5 0.22
16 15 0.65
17 3 0.13
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAACCTTAAAATTTTA
Found at i:92195233 original size:21 final size:22
Alignment explanation
Indices: 92195201--92195242 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
92195191 GTTTATTTTA
92195201 TTATTCTATATTAAATTATTTC
1 TTATTCTATATTAAATTATTTC
*
92195223 TTATT-TATATTAAGTTATTT
1 TTATTCTATATTAAATTATTT
92195243 TATTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (22 bp):
TTATTCTATATTAAATTATTTC
Found at i:92195803 original size:20 final size:20
Alignment explanation
Indices: 92195766--92195804 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
92195756 ATATGTATGT
*
92195766 ATATATATATTTCTTTATTC
1 ATATATATATTTCATTATTC
92195786 ATATAT-TATTATCATTATT
1 ATATATATATT-TCATTATT
92195805 TTCCACTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (20 bp):
ATATATATATTTCATTATTC
Found at i:92195978 original size:26 final size:26
Alignment explanation
Indices: 92195948--92195999 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
92195938 ATTATGTATA
* *
92195948 TATTTTTAATACTACTTATATATTTT
1 TATTTCTAATACTACGTATATATTTT
* *
92195974 TATTTCTATTATTACGTATATATTTT
1 TATTTCTAATACTACGTATATATTTT
92196000 NTAACATCCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.62
Consensus pattern (26 bp):
TATTTCTAATACTACGTATATATTTT
Found at i:92197464 original size:19 final size:19
Alignment explanation
Indices: 92197440--92197485 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
92197430 CTTTTTTTCT
*
92197440 TTTGCATT-CATTTCATGCA
1 TTTGCATTGCATTGCAT-CA
*
92197459 TTTGCATTGCATTGCATTA
1 TTTGCATTGCATTGCATCA
92197478 TTTGCATT
1 TTTGCATT
92197486 AGACTTTCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (19 bp):
TTTGCATTGCATTGCATCA
Found at i:92202055 original size:64 final size:64
Alignment explanation
Indices: 92201963--92202090 Score: 202
Period size: 64 Copynumber: 2.0 Consensus size: 64
92201953 ACATTTCTAC
* * * *
92201963 ACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATA
1 ACATCTAGTTAGGAGCATTAGATCCATTTCAATCATAGCATCCTAATTATTTGACATAAACATA
* *
92202027 ACATTTAGTTAGGAGCATTAGATCCATTTCAATCATAGCATCCTAATTATTTGGCATAAACATA
1 ACATCTAGTTAGGAGCATTAGATCCATTTCAATCATAGCATCCTAATTATTTGACATAAACATA
92202091 GATACATGAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.35
Consensus pattern (64 bp):
ACATCTAGTTAGGAGCATTAGATCCATTTCAATCATAGCATCCTAATTATTTGACATAAACATA
Found at i:92202337 original size:87 final size:87
Alignment explanation
Indices: 92202159--92202892 Score: 695
Period size: 87 Copynumber: 8.5 Consensus size: 87
92202149 TGAATTATCT
* * * * * *
92202159 CCCTAAGAAGTAGGGTAACAAGCTAAATTTAAAGATCTTAACCCCTTAAG-AGTAGGGAAACATA
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTGACCCCCTAAGCAGTAGGGAAACAGA
*
92202223 TCGAAGACGAAGGTCCTT-AAC
66 TCGAAGACGAAGGGCCTTAAAC
* * *
92202244 CTCCTAAGCAGTAGGGTAACAGGCTAAATTGACAGATCTTGTCCCCCTAAGCAATAGGGAAACAG
1 C-CCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTGACCCCCTAAGCAGTAGGGAAACAG
* *
92202309 ATCGAA-AGTGACA-GACCTTAAAC
65 ATCGAAGA-CGA-AGGGCCTTAAAC
* * * * * *
92202332 CCCTAAGCAGTAGGGTAACAGGTTGAA-TTACAGATCTTGTCTCCCTAAGCAGTA-GTAGAGCAG
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTGACCCCCTAAGCAGTAGGGA-AACAG
92202395 ATCGAAGACGAAGGGCCTT-AAC
65 ATCGAAGACGAAGGGCCTTAAAC
* * *
92202417 CCCTTAAGCAGTAGGGTAACAGGCTAAATTTACTA-ATCTTGTCTCCCTAAGCAGTAGTGG-AGC
1 CCC-TAAGCAGTAGGGTAACAGGCTAAATTTAC-AGATCTTGACCCCCTAAGCAGTAG-GGAAAC
*
92202480 AAATCGAAGACGAAGGGCCTTAAAC
63 AGATCGAAGACGAAGGGCCTTAAAC
* * * * * * *
92202505 CCTTAACCAGTAGGGTAACAGGCTAAATTTACAAATCTTGTCTCCCTAAGCAGT-GGTGGAATAG
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTGACCCCCTAAGCAGTAGG-GAAACAG
* *** *
92202569 ATCAAAGGTTAAGAGCCTTAAAC
65 ATCGAAGACGAAGGGCCTTAAAC
* *
92202592 CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTGACCCCCTAAGCAGTAGGGAAACAGA
* ** *
92202657 TCGAAGATGATA-GATCTTAATC
66 TCGAAGACGA-AGGGCCTTAAAC
* * * ** * ** * * *
92202679 CCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGATCTT-AACCCTTAAGCAGAAGGGAAACAG
1 CCCTAAGCAGTAGGGTAACAG-GCTAAATTTACAGATCTTGACCCCCTAAGCAGTAGGGAAACAG
* * *
92202743 ATCAAAGGCGATGGGCCTTAAAC
65 ATCGAAGACGAAGGGCCTTAAAC
* * * * *
92202766 CCTTAAGCAGTAGGGTAACAGGCTGAA-TTATAGATCTTAACCCCCTAAGCACTAGGGAAACAGA
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTGACCCCCTAAGCAGTAGGGAAACAGA
* *
92202830 TCAAAGAC-AATGTGCCTTAAAC
66 TCGAAGACGAA-GGGCCTTAAAC
* *
92202852 CCCTAAGCAGTAGGGTAACAGACTGAAAATTACAGATCTTG
1 CCCTAAGCAGTAGGGTAACAGGCT-AAATTTACAGATCTTG
92202893 CCTCCTTGAA
Statistics
Matches: 535, Mismatches: 89, Indels: 47
0.80 0.13 0.07
Matches are distributed among these distances:
85 21 0.04
86 171 0.32
87 308 0.58
88 34 0.06
89 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (87 bp):
CCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTGACCCCCTAAGCAGTAGGGAAACAGA
TCGAAGACGAAGGGCCTTAAAC
Found at i:92202458 original size:173 final size:174
Alignment explanation
Indices: 92202159--92202897 Score: 679
Period size: 173 Copynumber: 4.3 Consensus size: 174
92202149 TGAATTATCT
* * * * **
92202159 CCCTAAGAAGTAGGGTAACA-AGCTAAATTTAAAGATCTTAAC-CCCTTAAG-AGTAG-GGAAAC
1 CCCTAAGCAGTAGGGTAACAGA-CTGAAGTTACAGATCTTGTCTCCC-TAAGCAGTAGTGG-AAC
* * * * *
92202220 ATATCGAAGACGAAGGTCCTTAACCTCCTAAGCAGTAGGGTAACAGGCTAAATTGACAGATCTTG
63 AGATCAAAGACGAAGGGCCTTAACC-CCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTA
* *
92202285 TCCCCCTAAGCAATAGGGAAACAGATCGAA-AGTGACA-GACCTTAAAC
127 ACCCCCTAAGCAGTAGGGAAACAGATCGAAGA-TGACAGGACCTTAAAC
** * *
92202332 CCCTAAGCAGTAGGGTAACAGGTTGAA-TTACAGATCTTGTCTCCCTAAGCAGTAGTAGAGCAGA
1 CCCTAAGCAGTAGGGTAACAGACTGAAGTTACAGATCTTGTCTCCCTAAGCAGTAGTGGAACAGA
* **
92202396 TCGAAGACGAAGGGCCTTAACCCCTTAAGCAGTAGGGTAACAGGCTAAATTTACTA-ATCTTGTC
66 TCAAAGACGAAGGGCCTTAACCCC-TAAGCAGTAGGGTAACAGGCTAAATTTAC-AGATCTTAAC
* * * * *
92202460 TCCCTAAGCAGTAGTGG-AGCAAATCGAAGACGA-AGGGCCTTAAAC
129 CCCCTAAGCAGTAG-GGAAACAGATCGAAGATGACAGGACCTTAAAC
* * * * * * * *
92202505 CCTTAACCAGTAGGGTAACAGGCTAAATTTACAAATCTTGTCTCCCTAAGCAGTGGTGGAATAGA
1 CCCTAAGCAGTAGGGTAACAGACTGAAGTTACAGATCTTGTCTCCCTAAGCAGTAGTGGAACAGA
*** * *
92202570 TCAAAGGTTAAGAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACC
66 TCAAAGACGAAGGGCCTT-AACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACC
* * *
92202635 CCCTAAGCAGTAGGGAAACAGATCGAAGATGATA-GATCTTAATC
130 CCCTAAGCAGTAGGGAAACAGATCGAAGATGACAGGACCTTAAAC
* * ** ** * *
92202679 CCCTAAGCAGTAGGGAAACAGA-TCGAAGGTGATGGATCTTAAC-CCTTAAGCAGAAG-GGAAAC
1 CCCTAAGCAGTAGGGTAACAGACT-GAA-GTTACAGATCTTGTCTCCCTAAGCAGTAGTGG-AAC
* * * * *
92202741 AGATCAAAGGCGATGGGCCTTAAACCCTTAAGCAGTAGGGTAACAGGCTGAA-TTATAGATCTTA
63 AGATCAAAGACGAAGGGCCTT-AACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTA
*
92202805 ACCCCCTAAGCACTAGGGAAACAGATC-AA-A-GACAATGTG-CCTTAAAC
127 ACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGAC-A-G-GACCTTAAAC
* *
92202852 CCCTAAGCAGTAGGGTAACAGACTGAAAATTACAGATCTTGCCTCC
1 CCCTAAGCAGTAGGGTAACAGACTG-AAGTTACAGATCTTGTCTCC
92202898 TTGAAGTTAC
Statistics
Matches: 467, Mismatches: 75, Indels: 47
0.79 0.13 0.08
Matches are distributed among these distances:
170 2 0.00
171 2 0.00
172 20 0.04
173 226 0.48
174 202 0.43
175 15 0.03
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (174 bp):
CCCTAAGCAGTAGGGTAACAGACTGAAGTTACAGATCTTGTCTCCCTAAGCAGTAGTGGAACAGA
TCAAAGACGAAGGGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCC
CCTAAGCAGTAGGGAAACAGATCGAAGATGACAGGACCTTAAAC
Found at i:92202687 original size:44 final size:44
Alignment explanation
Indices: 92202585--92202873 Score: 243
Period size: 44 Copynumber: 6.7 Consensus size: 44
92202575 GGTTAAGAGC
* * * * *
92202585 CTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAA-TTTACAGAT
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATC-GAAGATGATAGAT
*
92202628 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGAT
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGAT
* * *
92202672 CTTAATCCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGGAT
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGAT
* * * ** * **
92202716 CTT-AACCCTTAAGCAGAAGGGAAACAGATCAAAGGCGATGGGC
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGAT
* * * *
92202759 CTTAAACCCTTAAGCAGTAGGGTAACAG-GCTG-A-ATTATAGAT
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATC-GAAGATGATAGAT
* * * **
92202801 CTTAACCCCCTAAGCACTAGGGAAACAGATCAAAGACAAT-G-T
1 CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGAT
*
92202843 GCCTTAAACCCCTAAGCAGTAGGGTAACAGA
1 --CTTAAACCCCTAAGCAGTAGGGAAACAGA
92202874 CTGAAAATTA
Statistics
Matches: 200, Mismatches: 37, Indels: 17
0.79 0.15 0.07
Matches are distributed among these distances:
42 28 0.14
43 70 0.35
44 102 0.51
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (44 bp):
CTTAAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGATAGAT
Found at i:92203057 original size:45 final size:44
Alignment explanation
Indices: 92203008--92203228 Score: 114
Period size: 45 Copynumber: 5.0 Consensus size: 44
92202998 AGAGTAGGTT
*
92203008 GAAGATTGCAGATCTTGCCTCCTTGAAGTTGTAGTGGAGCAGATC
1 GAAGATGGCAGATCTTGCCTCC-TGAAGTTGTAGTGGAGCAGATC
* ** * *
92203053 GAAGACGGC-GAATCTTGCCTTCCTGAAGTTACAGTGAAGTAGAT-
1 GAAGATGGCAG-ATCTTGCC-TCCTGAAGTTGTAGTGGAGCAGATC
** * * * ** ** * *
92203097 TTA-A-GCCACCATCCTATCTCCCT-AAGCAGTAGTGGAGTAG-GC
1 GAAGATGGCA-GATCTTGCCT-CCTGAAGTTGTAGTGGAGCAGATC
* *
92203139 TGAAGATTGTAGATCTTGCCTCCCTGAAGTTGTAGTGGAGCAGATC
1 -GAAGATGGCAGATCTTGCCT-CCTGAAGTTGTAGTGGAGCAGATC
* * *
92203185 GAAGAAGGC-GAATCTTGCCTTCCTGAAGTTGCAGTGAAGCAGAT
1 GAAGATGGCAG-ATCTTGCC-TCCTGAAGTTGTAGTGGAGCAGAT
92203229 TTAAGCCACC
Statistics
Matches: 126, Mismatches: 37, Indels: 26
0.67 0.20 0.14
Matches are distributed among these distances:
42 15 0.12
43 10 0.08
44 14 0.11
45 82 0.65
46 5 0.04
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (44 bp):
GAAGATGGCAGATCTTGCCTCCTGAAGTTGTAGTGGAGCAGATC
Found at i:92203089 original size:132 final size:132
Alignment explanation
Indices: 92202852--92203306 Score: 687
Period size: 132 Copynumber: 3.4 Consensus size: 132
92202842 TGCCTTAAAC
** * * * * **
92202852 CCCTAAGCAGTAG-GGTAACAGACTGAAAATTACAGATCTTGCCTCCTTGAAGTTACAGTGGAGC
1 CCCTAAGCAGTAGTGG-AGTAGGCTGAAGATTGCAGATCTTGCCTCCCTGAAGTTGTAGTGGAGC
** * *
92202916 AGATTAAAGACGGCGAATCTTGCCTTCTTAAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTA
65 AGATCGAAGACGGCGAATCTTGCCTTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTA
92202981 TCT
130 TCT
* * *
92202984 CCCTAAGCAGTAGTAGAGTAGGTTGAAGATTGCAGATCTTGCCTCCTTGAAGTTGTAGTGGAGCA
1 CCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGCCTCCCTGAAGTTGTAGTGGAGCA
*
92203049 GATCGAAGACGGCGAATCTTGCCTTCCTGAAGTTACAGTGAAGTAGATTTAAGCCACCATCCTAT
66 GATCGAAGACGGCGAATCTTGCCTTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTAT
92203114 CT
131 CT
*
92203116 CCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTAGATCTTGCCTCCCTGAAGTTGTAGTGGAGCA
1 CCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGCCTCCCTGAAGTTGTAGTGGAGCA
* *
92203181 GATCGAAGAAGGCGAATCTTGCCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAT
66 GATCGAAGACGGCGAATCTTGCCTTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTAT
92203246 CT
131 CT
* * * *
92203248 CCCTAAGCAGTAGTGGGGTAGGCTAAAGATTGCAGATCTTGTCTCCCTGAATTTGTAGT
1 CCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGCCTCCCTGAAGTTGTAGT
92203307 AGAAGACGAT
Statistics
Matches: 296, Mismatches: 26, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
132 295 1.00
133 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (132 bp):
CCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGATCTTGCCTCCCTGAAGTTGTAGTGGAGCA
GATCGAAGACGGCGAATCTTGCCTTCCTGAAGTTACAGTGAAGCAGATTTAAGCCACCATCCTAT
CT
Found at i:92204654 original size:21 final size:22
Alignment explanation
Indices: 92204622--92204663 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
92204612 GTTTATTTTA
92204622 TTATTCTATATTAAATTATTTC
1 TTATTCTATATTAAATTATTTC
*
92204644 TTATT-TATATTAAGTTATTT
1 TTATTCTATATTAAATTATTT
92204664 TATTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (22 bp):
TTATTCTATATTAAATTATTTC
Found at i:92205192 original size:20 final size:20
Alignment explanation
Indices: 92205155--92205193 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
92205145 ATATGTATGT
*
92205155 ATATATATATTTCTTTATTC
1 ATATATATATTTCATTATTC
92205175 ATATAT-TATTATCATTATT
1 ATATATATATT-TCATTATT
92205194 TTCCACTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (20 bp):
ATATATATATTTCATTATTC
Found at i:92205369 original size:26 final size:26
Alignment explanation
Indices: 92205339--92205390 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
92205329 ATTATGTATA
*
92205339 TATTTTTAATACTACGTATACATTTT
1 TATTTCTAATACTACGTATACATTTT
* * *
92205365 TATTTCTATTATTACGTATATATTTT
1 TATTTCTAATACTACGTATACATTTT
92205391 AATACATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTTCTAATACTACGTATACATTTT
Found at i:92205592 original size:15 final size:15
Alignment explanation
Indices: 92205572--92205603 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
92205562 TTATTATCGT
92205572 TTTATACTATTATTA
1 TTTATACTATTATTA
*
92205587 TTTATATTATTATTA
1 TTTATACTATTATTA
92205602 TT
1 TT
92205604 ATCATTCTCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTATACTATTATTA
Found at i:92208430 original size:16 final size:17
Alignment explanation
Indices: 92208404--92208445 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
92208394 CTTTAGAACG
* *
92208404 TTTTTAGAATTTTTATT
1 TTTTTAGAATTTATAAT
92208421 TTTTTA-AATTTATAAT
1 TTTTTAGAATTTATAAT
92208437 TTTTTAGAA
1 TTTTTAGAA
92208446 AATATAAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (17 bp):
TTTTTAGAATTTATAAT
Found at i:92209461 original size:26 final size:27
Alignment explanation
Indices: 92209409--92209462 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
92209399 AAGTAAAAAC
* **
92209409 AGAAACGTTAAAAGAAATTTTTTTTAT
1 AGAAACATTAAAAGAAATTTTAATTAT
92209436 AGAAACATTAAAAG-AATTTTAATTAT
1 AGAAACATTAAAAGAAATTTTAATTAT
92209462 A
1 A
92209463 TATGATCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.50, C:0.04, G:0.09, T:0.37
Consensus pattern (27 bp):
AGAAACATTAAAAGAAATTTTAATTAT
Found at i:92211897 original size:43 final size:43
Alignment explanation
Indices: 92211560--92211898 Score: 340
Period size: 43 Copynumber: 7.9 Consensus size: 43
92211550 TTATGTAAAA
* * * ** * *
92211560 AAACACCGTTAAAGAACATGACATTTAGCGGCATTTTTGAGA-
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCATAC
* * * * *
92211602 AAGCGCCGCTAAAGAACTTGACCTCTAGCGGTGCTTTCCATAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCATAC
** ** *
92211645 AAAATCCGCTAAAGAACATGACCTTTAGCGGCGCTTCCCGTAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCATAC
* * ** *
92211688 AAACGTCGCTAAAGAACATGACCTTTAGCGGTGCTTACCAAAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCATAC
* * * *
92211731 AAACGCCGCTAAAGAACGTGACCTTTGGCGGCTCTTTTCACAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCATAC
* * * * *
92211774 AAACGCCGCTAAAGAACGTGATCTTTGGCGGTGCTTTTC-TCAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCAT-AC
* *
92211817 AAACGCCGCTAAAGAACATGACCTATAGCGGCACTTTTCATAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCATAC
**
92211860 AAACGCCGCTAAAGAACATGATTTTTAGCGGCGCTTTTC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTC
92211899 TAAAAAACGC
Statistics
Matches: 243, Mismatches: 51, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
42 30 0.12
43 212 0.87
44 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCATAC
Found at i:92212645 original size:13 final size:14
Alignment explanation
Indices: 92212615--92212647 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
92212605 GAATATACCG
92212615 TTATAATTAAACCA
1 TTATAATTAAACCA
*
92212629 TTATGATTAAA-CA
1 TTATAATTAAACCA
92212642 TTATAA
1 TTATAA
92212648 ATATTTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.48, C:0.09, G:0.03, T:0.39
Consensus pattern (14 bp):
TTATAATTAAACCA
Found at i:92216583 original size:40 final size:40
Alignment explanation
Indices: 92216528--92216747 Score: 381
Period size: 40 Copynumber: 5.5 Consensus size: 40
92216518 TTCGGATGAC
92216528 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
92216568 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
92216608 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
92216648 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
92216688 ATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
* *
92216728 ATCC-GGCTAAATCTCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
92216748 TGCTTGGGTT
Statistics
Matches: 175, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
39 14 0.08
40 159 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:92221181 original size:9 final size:9
Alignment explanation
Indices: 92221167--92221200 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
92221157 CGTAGGTTAA
92221167 GTAAGTTTT
1 GTAAGTTTT
92221176 GTAAGTTTT
1 GTAAGTTTT
*
92221185 GTAAGTTAT
1 GTAAGTTTT
92221194 GTAAGTT
1 GTAAGTT
92221201 ATGATATGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (9 bp):
GTAAGTTTT
Found at i:92221327 original size:86 final size:86
Alignment explanation
Indices: 92221175--92221592 Score: 591
Period size: 86 Copynumber: 4.9 Consensus size: 86
92221165 AAGTAAGTTT
* * * ** *
92221175 TGTAAGTTTTGTAAGTTATG-TAAGTTATGATATGATATACATTTATGTAAGCTATGTAAGTTAT
1 TGTAAGTTTTGTAAGTTATGATATGATAT-ATAT-TTATGTA-TTATGTAAGTTATGTAAGTTAT
**
92221239 GATATGATATATAGCTATGTATTA
63 GATATGATATATATTTATGTATTA
*
92221263 TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGAT
1 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGAT
92221328 ATGATATATATTTATGTATTA
66 ATGATATATATTTATGTATTA
* *
92221349 TGTAAGTTTTGTAAGTAATGATATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATGAT
1 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGAT
92221414 ATGATATATATTTATGTATTA
66 ATGATATATATTTATGTATTA
*
92221435 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATGAT
1 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGAT
92221500 ATGATATATATTTATGTATTA
66 ATGATATATATTTATGTATTA
* * * * * *
92221521 TGTAAGTTTTGTAAGTTATG-TAAG-T-TAT-TATATG-A-TATAT-ATTTATGTAAATTATTAT
1 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGAT
92221579 ATGATATATATTTA
66 ATGATATATATTTA
92221593 ACATTAAGAT
Statistics
Matches: 309, Mismatches: 20, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
79 28 0.09
80 4 0.01
81 1 0.00
82 5 0.02
83 3 0.01
84 1 0.00
85 3 0.01
86 231 0.75
87 4 0.01
88 23 0.07
89 6 0.02
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.49
Consensus pattern (86 bp):
TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATGAT
ATGATATATATTTATGTATTA
Found at i:92221397 original size:129 final size:129
Alignment explanation
Indices: 92221184--92221592 Score: 596
Period size: 129 Copynumber: 3.3 Consensus size: 129
92221174 TTGTAAGTTT
*
92221184 TGTAAGTTATGTAAGTTATGATATGATATACATTTATGTA--A-GCT-A----TGTAAGTTATGA
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATG-TAAGTTTTGTAAGTTATGA
** *
92221241 TATGATATATAGCTATGTATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTA
65 TATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
*
92221306 TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTTTGTAAGTAATGAT
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATGAT
92221371 ATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
66 ATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
*
92221435 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATGAT
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATGAT
* *
92221500 ATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATG-TAAG-T-TAT-TATATG-A-TA
66 ATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
* * * *
92221558 TAT-ATTTATGTAAATTATTATATGATATATATTTA
1 TGTAAGTTATGTAAGTTATGATATGATATATATTTA
92221593 ACATTAAGAT
Statistics
Matches: 265, Mismatches: 14, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
122 67 0.25
123 4 0.02
124 3 0.01
125 7 0.03
126 3 0.01
127 1 0.00
128 3 0.01
129 177 0.67
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.49
Consensus pattern (129 bp):
TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATGAT
ATGATATATATTTATGTATTATGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
Found at i:92221553 original size:43 final size:43
Alignment explanation
Indices: 92221175--92221540 Score: 590
Period size: 43 Copynumber: 8.5 Consensus size: 43
92221165 AAGTAAGTTT
* * * **
92221175 TGTAAGTTTTGTAAGTTATG-TAAGTTATGATATGATATACATTTA
1 TGTAAGTTTTGTAAGTTATGATATGATAT-ATAT-TTATGTA-TTA
* * **
92221220 TGTAAGCTATGTAAGTTATGATATGATATATAGCTATGTATTA
1 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
*
92221263 TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTA
1 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
*
92221306 TGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTA
1 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
*
92221349 TGTAAGTTTTGTAAGTAATGATATGATATATATTTATGTATTA
1 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
92221392 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
1 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
92221435 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
1 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
92221478 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
1 TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
92221521 TGTAAGTTTTGTAAGTTATG
1 TGTAAGTTTTGTAAGTTATG
92221541 TAAGTTATTA
Statistics
Matches: 306, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
43 275 0.90
44 4 0.01
45 21 0.07
46 6 0.02
ACGTcount: A:0.33, C:0.01, G:0.17, T:0.49
Consensus pattern (43 bp):
TGTAAGTTTTGTAAGTTATGATATGATATATATTTATGTATTA
Found at i:92221566 original size:27 final size:27
Alignment explanation
Indices: 92221487--92221592 Score: 112
Period size: 27 Copynumber: 4.0 Consensus size: 27
92221477 ATGTAAGTTT
*
92221487 TGTAAGTTATGATATGATATATATTTA
1 TGTAAGTTATTATATGATATATATTTA
* * * *
92221514 TGT-A-TTATGTA-A-GTTTTGTAAGTTA
1 TGTAAGTTAT-TATATGATATAT-ATTTA
92221539 TGTAAGTTATTATATGATATATATTTA
1 TGTAAGTTATTATATGATATATATTTA
*
92221566 TGTAAATTATTATATGATATATATTTA
1 TGTAAGTTATTATATGATATATATTTA
92221593 ACATTAAGAT
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
24 4 0.06
25 12 0.19
26 5 0.08
27 38 0.60
28 4 0.06
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (27 bp):
TGTAAGTTATTATATGATATATATTTA
Found at i:92221897 original size:165 final size:163
Alignment explanation
Indices: 92221620--92221920 Score: 557
Period size: 165 Copynumber: 1.8 Consensus size: 163
92221610 ATTTTCCTTT
* *
92221620 AAAACAATTATTTTAATTAAATAATATTTAAATAAATTAATCCAAATTATGTAATTTAAAAAATT
1 AAAAAAATTATTTTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATT
92221685 GTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATGAAAAAGAAATAAT
66 GTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATG-AAAA-AAATAAT
92221750 AAAAATAAAATTTGACGGTGTGGAAAATCACATGG
129 AAAAATAAAATTTGACGGTGTGGAAAATCACATGG
92221785 AAAAAAATTATTTTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATT
1 AAAAAAATTATTTTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATT
*
92221850 GTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATGAAAAAAATATTAA
66 GTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATGAAAAAAATAATAA
92221915 AAATAA
131 AAATAA
92221921 GATTGAACCT
Statistics
Matches: 133, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
163 14 0.11
164 4 0.03
165 115 0.86
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.33
Consensus pattern (163 bp):
AAAAAAATTATTTTAATTAAATAATATTTAAATAAATTAATCCAAATTATATAATTTAAAAAATT
GTGTATAAAAAGTTGAAAACCGTATAAGATGAAATGTCAACTTTGTTCCATGAAAAAAATAATAA
AAATAAAATTTGACGGTGTGGAAAATCACATGG
Found at i:92221958 original size:14 final size:14
Alignment explanation
Indices: 92221939--92221969 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
92221929 CTTGTTTTAA
92221939 TATGGTAATGGCAT
1 TATGGTAATGGCAT
92221953 TATGGTAATGGCAT
1 TATGGTAATGGCAT
92221967 TAT
1 TAT
92221970 CGACTAACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.39
Consensus pattern (14 bp):
TATGGTAATGGCAT
Found at i:92222229 original size:24 final size:24
Alignment explanation
Indices: 92222201--92222247 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
92222191 TTAACTTAAA
*
92222201 TGATAAAACGGACGATAATATTTT
1 TGATAAAACGGACGAGAATATTTT
92222225 TGATAAAACGGACGAGAATATTT
1 TGATAAAACGGACGAGAATATTT
92222248 CAATAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.30
Consensus pattern (24 bp):
TGATAAAACGGACGAGAATATTTT
Found at i:92224175 original size:147 final size:147
Alignment explanation
Indices: 92223902--92224205 Score: 337
Period size: 147 Copynumber: 2.1 Consensus size: 147
92223892 CGTTTTGGAC
* * *
92223902 AAAACGCCACTAATAACAAGGATAAAACGATGACGTTTTATGGACTCATAATACACATTTGCGGC
1 AAAACGCCACTAATAACAAGGATAAAACGATGACATTTTAGGGACTCATAATACACATTTGCGGA
* ** * * *
92223967 GTTTTACGAAAGCGCCACTAAATACAAAGAACAAAACGGCGTCGTTTTGCTAACACTTAACACAT
66 GTTTTACGAAAGCGCCACTAAAAACAAAGAACAAAACGGCACCATTTTACTAACACCTAACACAT
*
92224032 ATTTGTGGTATTTTTGG
131 ATTTGTGGCATTTTTGG
* * * * * *
92224049 AAAATGCCACTAATAACAAGGCTAAATA-G-TGTCATTTT-GGGAACTCCTAATACATATTTGTG
1 AAAACGCCACTAATAACAAGGATAAA-ACGATGACATTTTAGGG-ACTCATAATACACATTTGCG
* * *
92224111 GAGTTTTTAAC-AAAGCGCCACTAAAAATAAAGCATAAAACGGCACCATTTTACTAACACCTAAC
64 GAG-TTTT-ACGAAAGCGCCACTAAAAACAAAGAACAAAACGGCACCATTTTACTAACACCTAAC
* *
92224175 ATATATTTGTGGCGTTTTTGG
127 ACATATTTGTGGCATTTTTGG
92224196 CTAAAACGCC
1 --AAAACGCC
92224206 GGTAATGCAT
Statistics
Matches: 129, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
145 2 0.02
146 26 0.20
147 91 0.71
148 3 0.02
149 7 0.05
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (147 bp):
AAAACGCCACTAATAACAAGGATAAAACGATGACATTTTAGGGACTCATAATACACATTTGCGGA
GTTTTACGAAAGCGCCACTAAAAACAAAGAACAAAACGGCACCATTTTACTAACACCTAACACAT
ATTTGTGGCATTTTTGG
Found at i:92225027 original size:22 final size:22
Alignment explanation
Indices: 92224986--92225027 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
92224976 GGGTTTAAAA
**
92224986 GTTTAAGGATTTAGTTTTTATT
1 GTTTAAGGATTTAGGGTTTATT
*
92225008 GTTTAAGGTTTTAGGGTTTA
1 GTTTAAGGATTTAGGGTTTA
92225028 AGGGTTTTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (22 bp):
GTTTAAGGATTTAGGGTTTATT
Found at i:92225029 original size:15 final size:15
Alignment explanation
Indices: 92224944--92225037 Score: 75
Period size: 15 Copynumber: 6.3 Consensus size: 15
92224934 AAATTTATTA
*
92224944 TTAGGGTTTAAAGTT
1 TTAGGGTTTAAGGTT
*
92224959 TTAGGGTTTATGG-T
1 TTAGGGTTTAAGGTT
* *
92224973 TTGGGGTTTAAAAGTT
1 TTAGGGTTT-AAGGTT
* * *
92224989 TAAGGATTT-AGTTT
1 TTAGGGTTTAAGGTT
**
92225003 TTATTGTTTAAGGTT
1 TTAGGGTTTAAGGTT
92225018 TTAGGGTTTAAGGGTT
1 TTAGGGTTTAA-GGTT
92225034 TTAG
1 TTAG
92225038 TTCATGGGTT
Statistics
Matches: 58, Mismatches: 17, Indels: 7
0.71 0.21 0.09
Matches are distributed among these distances:
14 17 0.29
15 26 0.45
16 15 0.26
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (15 bp):
TTAGGGTTTAAGGTT
Found at i:92225077 original size:21 final size:21
Alignment explanation
Indices: 92225052--92225127 Score: 84
Period size: 21 Copynumber: 3.6 Consensus size: 21
92225042 TGGGTTGGGA
* *
92225052 TTTAGGGGTTAGGCTTTAGAT
1 TTTAGGGTTTAGGCTTTAGAG
92225073 TTTAGGGTTTAGG-TGTTA-AGG
1 TTTAGGGTTTAGGCT-TTAGA-G
* *
92225094 TTTAGGGATTAAGCTTTAGAG
1 TTTAGGGTTTAGGCTTTAGAG
92225115 TTTAGGGTTTAGG
1 TTTAGGGTTTAGG
92225128 GGCCGAAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
20 2 0.04
21 41 0.91
22 2 0.04
ACGTcount: A:0.21, C:0.03, G:0.34, T:0.42
Consensus pattern (21 bp):
TTTAGGGTTTAGGCTTTAGAG
Found at i:92225124 original size:7 final size:7
Alignment explanation
Indices: 92225052--92225128 Score: 57
Period size: 7 Copynumber: 11.0 Consensus size: 7
92225042 TGGGTTGGGA
92225052 TTTAGGG
1 TTTAGGG
* *
92225059 GTTAGGC
1 TTTAGGG
**
92225066 TTTAGAT
1 TTTAGGG
92225073 TTTAGGG
1 TTTAGGG
92225080 TTTA-GG
1 TTTAGGG
*
92225086 TGTTAAGG
1 T-TTAGGG
92225094 TTTAGGG
1 TTTAGGG
* * *
92225101 ATTAAGC
1 TTTAGGG
*
92225108 TTTAGAG
1 TTTAGGG
92225115 TTTAGGG
1 TTTAGGG
92225122 TTTAGGG
1 TTTAGGG
92225129 GCCGAAATTA
Statistics
Matches: 52, Mismatches: 16, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
6 3 0.06
7 46 0.88
8 3 0.06
ACGTcount: A:0.21, C:0.03, G:0.35, T:0.42
Consensus pattern (7 bp):
TTTAGGG
Found at i:92226024 original size:40 final size:40
Alignment explanation
Indices: 92225968--92226059 Score: 130
Period size: 40 Copynumber: 2.3 Consensus size: 40
92225958 TTTTTGCGAT
*
92225968 TTTTTCCAAAAAGCACCGCTAACGGTCGAGCTATAGAGACG
1 TTTTT-CAAAAAGCACCGCTAACGCTCGAGCTATAGAGACG
* * * *
92226009 TTTTTCAAAAAGCACCGCTAATGCTTGATCTATAGCGACG
1 TTTTTCAAAAAGCACCGCTAACGCTCGAGCTATAGAGACG
92226049 TTTTTCAAAAA
1 TTTTTCAAAAA
92226060 ATGCCACTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 41 0.89
41 5 0.11
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (40 bp):
TTTTTCAAAAAGCACCGCTAACGCTCGAGCTATAGAGACG
Found at i:92226188 original size:40 final size:40
Alignment explanation
Indices: 92226142--92226308 Score: 239
Period size: 40 Copynumber: 4.2 Consensus size: 40
92226132 AAAAACGCCT
*
92226142 CTAATGCTTGATCTATAGCGGCGTTTTTAGAAAAGTGCCG
1 CTAATGCTCGATCTATAGCGGCGTTTTTAGAAAAGTGCCG
* *** *
92226182 CTAATGCTCGATCTA-ACCTATGTTTTTAGAAAAGTGCGG
1 CTAATGCTCGATCTATAGCGGCGTTTTTAGAAAAGTGCCG
*
92226221 CTAATGCTCGATCTATAGCTGCGTTTTTAGAAAAGTGCCG
1 CTAATGCTCGATCTATAGCGGCGTTTTTAGAAAAGTGCCG
92226261 CTAATGCTCGATCTATAGCGGCGTTTTTTTA-AAAAGTGCCG
1 CTAATGCTCGATCTATAGCGGCG--TTTTTAGAAAAGTGCCG
92226302 CTAATGC
1 CTAATGC
92226309 CACTAAAGCT
Statistics
Matches: 113, Mismatches: 11, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
39 34 0.30
40 56 0.50
41 17 0.15
42 6 0.05
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (40 bp):
CTAATGCTCGATCTATAGCGGCGTTTTTAGAAAAGTGCCG
Found at i:92226437 original size:46 final size:45
Alignment explanation
Indices: 92226386--92226504 Score: 122
Period size: 40 Copynumber: 2.7 Consensus size: 45
92226376 GGTCAACCAT
*
92226386 TAGCGGCATTTTTCAAAAAGCGCCGCTAATGCTAATGCTCGATCTA
1 TAGCGGCGTTTTTCAAAAAG-GCCGCTAATGCTAATGCTCGATCTA
* * * * *
92226432 TAGCGGTGTTTTCCAAAAA----GC-ATTGTTAATGCTTGATCTA
1 TAGCGGCGTTTTTCAAAAAGGCCGCTAATGCTAATGCTCGATCTA
*
92226472 TAGTGGCGTTTTTCAAAAAGTGCCGCTAATGCT
1 TAGCGGCGTTTTTCAAAAAG-GCCGCTAATGCT
92226505 CAATCTATAG
Statistics
Matches: 56, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
40 32 0.57
41 2 0.04
45 2 0.04
46 20 0.36
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (45 bp):
TAGCGGCGTTTTTCAAAAAGGCCGCTAATGCTAATGCTCGATCTA
Found at i:92226502 original size:40 final size:40
Alignment explanation
Indices: 92226416--92226524 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
92226406 CGCCGCTAAT
* * **
92226416 GCTAATGCTCGATCTATAGCGGTGTTTTCCAAAAAGCATT
1 GCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCACC
* * * **
92226456 GTTAATGCTTGATCTATAGTGGCGTTTTTCAAAAAGTGCC
1 GCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCACC
* *
92226496 GCTAATGCTCAATCTATAGCGGCATTTTT
1 GCTAATGCTCGATCTATAGCGGCGTTTTT
92226525 TATCCAAACG
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (40 bp):
GCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCACC
Found at i:92235503 original size:43 final size:43
Alignment explanation
Indices: 92235455--92235541 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
92235445 GTCAATTCCC
92235455 TTAGTTTTTTTCTCTACCGAATAAGGAATTTTATAAAAAAATT
1 TTAGTTTTTTTCTCTACCGAATAAGGAATTTTATAAAAAAATT
92235498 TTAGTTTTTTTCTCTACCGAATAAGGAATTTTATAAAAAAATT
1 TTAGTTTTTTTCTCTACCGAATAAGGAATTTTATAAAAAAATT
92235541 T
1 T
92235542 CTGTCGTGTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.45
Consensus pattern (43 bp):
TTAGTTTTTTTCTCTACCGAATAAGGAATTTTATAAAAAAATT
Found at i:92235934 original size:25 final size:26
Alignment explanation
Indices: 92235906--92235956 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
92235896 CTTATTTCAT
*
92235906 TAAATAAAATAT-TTTAAAAATATAA
1 TAAATAAAATATATTTAAAAACATAA
*
92235931 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAATATATTTAAAAACATAA
92235957 AAACAAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (26 bp):
TAAATAAAATATATTTAAAAACATAA
Found at i:92235956 original size:26 final size:25
Alignment explanation
Indices: 92235906--92235967 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
92235896 CTTATTTCAT
* *
92235906 TAAATAAAATATTTTAAAAATATAA
1 TAAATCAAATATTTTAAAAACATAA
92235931 TAAATCAAATATATTTAAAAACATAA
1 TAAATCAAATAT-TTTAAAAACATAA
92235957 -AAA-CAAATATT
1 TAAATCAAATATT
92235968 AAAACAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 1 0.03
24 7 0.21
25 14 0.41
26 12 0.35
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (25 bp):
TAAATCAAATATTTTAAAAACATAA
Found at i:92239113 original size:14 final size:13
Alignment explanation
Indices: 92239092--92239126 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
92239082 AATTTATATC
*
92239092 AAATTAAATTATA
1 AAATTAAATCATA
92239105 AATATTAAATCATA
1 AA-ATTAAATCATA
92239119 AAATTAAA
1 AAATTAAA
92239127 CCTAATAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (13 bp):
AAATTAAATCATA
Found at i:92246946 original size:396 final size:396
Alignment explanation
Indices: 92246020--92247160 Score: 1596
Period size: 396 Copynumber: 2.9 Consensus size: 396
92246010 AAGGAAGATC
* **
92246020 TAGCAACTCC-ACACAAGAGCATGATGGGGAAATAGGTAAGTTGATTTTTCTTCTTTACATAAAT
1 TAGCAGCTCCAACACAAGAGCATGATGGGGAAATAGGTAAGTTGATTTTTCTTCTTTACATAACC
* * * * * *
92246084 TTAACATGAGGG-TTATGTCTAAATGAAAGACATGGCGACTCTCATTATAACTTTCTCTCTCCTT
66 TTAACATG-GGGATTGTGTCTAAATGAGAGACATGG-GACTCTCATTACAACTTGCTTTCTCATT
* * *
92246148 TTGGTAATGTTTATTAGATATTTTCCGAACCAAATTCACTATCTAATATTACTTATTAGATTTAA
129 TTGATAATGTTTGTTAGATATTTTCCAAACCAAATTCACTATCTAATATTACTTATTAGATTTAA
* *
92246213 GTTATTTAAATTTCTGTAGAGAACTTAGATTAGCT-TTGGGATATGGAGCATGATCAATTAGGGC
194 GTTATTTAAATTTCTGTAGAGAACTTAGATTAGCTCTT-GGATATGGAGGATGATCAGTTAGGGC
* *
92246277 ATGATAACCCAATGCAACAACATGATCACTAGTTGGGGCATGATGACCCCATAAAGCAGTAACAA
258 ATGATAACCCAATGCAACAACAAGATCACTAGTTGGGGCATGATGACCCCATAAACCAG--ACAA
* * * *
92246342 TAACAACAACATATGGATCATGATGATTTGTTGGGGCATAATGACCCCATGAAACAAGAGCAGTC
321 CAACAACAACAGATGGATAATGATGATTCGTTGGGGCATAATGACCCCATGAAACAAGAGCAGTC
92246407 GATGGAAAAGA
386 GATGGAAAAGA
* *
92246418 TAGCAGCTCCAACACAAGAGCATGATGGGTAAATAGGTAAGTTGATTTTTCATCTTTACATAACC
1 TAGCAGCTCCAACACAAGAGCATGATGGGGAAATAGGTAAGTTGATTTTTCTTCTTTACATAACC
* * *
92246483 TAAACATGGGGATTGTGTCTAAATGAGAGACATGGGGACTCCCATTACAACTTG-TTCTCTTATT
66 TTAACATGGGGATTGTGTCTAAATGAGAGACAT-GGGACTCTCATTACAACTTGCTT-TCTCATT
*
92246547 TTGATAATGTTTGTTAGATATTTTCCAAACCAAATTCACTATCTAATATAACTTATTAGATTTAA
129 TTGATAATGTTTGTTAGATATTTTCCAAACCAAATTCACTATCTAATATTACTTATTAGATTTAA
* * *
92246612 GTTATTTAAATTTCTGTAGAGAACTTAAATTAGCTCTTAGATATGGAGGATGATCAGTTAGGGAA
194 GTTATTTAAATTTCTGTAGAGAACTTAGATTAGCTCTTGGATATGGAGGATGATCAGTTAGGGCA
* * * *
92246677 TGATAACCCAATGCAACAACAGGATCACCAGTTGGGGCATGATGACCCCATGAACCAG-CGACAA
259 TGATAACCCAATGCAACAACAAGATCACTAGTTGGGGCATGATGACCCCATAAACCAGACAACAA
* ** * *
92246741 CAACAACAGATGGATAATGATGATTCGTTGGGGCATGATGACCCCATGAAGTAGGAGCAGTTGAT
324 CAACAACAGATGGATAATGATGATTCGTTGGGGCATAATGACCCCATGAAACAAGAGCAGTCGAT
92246806 -GAAAGAGA
389 GGAAA-AGA
*
92246814 TAGTAGCTCCAACACAAGAGCATGATGGGGAAATAGGTAAGTTGATTTTTCTTCTTTACATAACC
1 TAGCAGCTCCAACACAAGAGCATGATGGGGAAATAGGTAAGTTGATTTTTCTTCTTTACATAACC
92246879 TTAACATGGGGATTGTGTCTAAATGAGAGACATGAGGACTCTCATTACAACTTGCTTTCTCATTT
66 TTAACATGGGGATTGTGTCTAAATGAGAGACATG-GGACTCTCATTACAACTTGCTTTCTCATTT
* * *
92246944 TGATAATGTTCGTTAGATATTTTCCAAACCAAATTAATTATCTAATATTACTTATTAGATTTAAG
130 TGATAATGTTTGTTAGATATTTTCCAAACCAAATTCACTATCTAATATTACTTATTAGATTTAAG
* * * * *
92247009 TTATTTAAATTTTTGTAGAGAACTTAGATCAACTCTTGGATATAGAGGATGATCAGTTGGGGCAT
195 TTATTTAAATTTCTGTAGAGAACTTAGATTAGCTCTTGGATATGGAGGATGATCAGTTAGGGCAT
* * * * * * * ** *
92247074 GATAACATC-ATGCAACAGCAAGATCATTAATTGAGGCATGATGACCTCA-CAAGGAAACAACAA
260 GATAAC-CCAATGCAACAACAAGATCACTAGTTGGGGCATGATGACCCCATAAACCAGACAACAA
** *
92247137 CAACAGTAGATGGATCATGATGAT
324 CAACAACAGATGGATAATGATGAT
92247161 CTATAAGGGC
Statistics
Matches: 662, Mismatches: 71, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
395 8 0.01
396 366 0.55
397 3 0.00
398 13 0.02
399 268 0.40
400 4 0.01
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (396 bp):
TAGCAGCTCCAACACAAGAGCATGATGGGGAAATAGGTAAGTTGATTTTTCTTCTTTACATAACC
TTAACATGGGGATTGTGTCTAAATGAGAGACATGGGACTCTCATTACAACTTGCTTTCTCATTTT
GATAATGTTTGTTAGATATTTTCCAAACCAAATTCACTATCTAATATTACTTATTAGATTTAAGT
TATTTAAATTTCTGTAGAGAACTTAGATTAGCTCTTGGATATGGAGGATGATCAGTTAGGGCATG
ATAACCCAATGCAACAACAAGATCACTAGTTGGGGCATGATGACCCCATAAACCAGACAACAACA
ACAACAGATGGATAATGATGATTCGTTGGGGCATAATGACCCCATGAAACAAGAGCAGTCGATGG
AAAAGA
Found at i:92252983 original size:29 final size:29
Alignment explanation
Indices: 92252950--92253007 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
92252940 TCAATGGGGT
92252950 ATGAAAAGATTATTGGCTAGATATGTGGC
1 ATGAAAAGATTATTGGCTAGATATGTGGC
92252979 ATGAAAAGATTATTGGCTAGATATGTGGC
1 ATGAAAAGATTATTGGCTAGATATGTGGC
92253008 GTATGGCCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (29 bp):
ATGAAAAGATTATTGGCTAGATATGTGGC
Found at i:92256880 original size:74 final size:75
Alignment explanation
Indices: 92256801--92256970 Score: 191
Period size: 74 Copynumber: 2.3 Consensus size: 75
92256791 GCGCCCAGCA
* * * *
92256801 CTAGTCAGTTTAATCGACGAT-ATCAAATGTGAGCCCAGCTCTAGTTGGATAAACCAACAAT-GT
1 CTAGTCAGATTAACCAACGATAAT-AAATGTAAGCCCAGCTCTAGTTGGATAAACCAACAATAGT
92256864 TGCACCCAGTG
65 TGCACCCAGTG
* * ** * *
92256875 TTAGTCGGATTAACCAACGATAATAGTTGTAAGCCCAGGTCTAGTTGGATAAACCAACAATATTT
1 CTAGTCAGATTAACCAACGATAATAAATGTAAGCCCAGCTCTAGTTGGATAAACCAACAATAGTT
*
92256940 GCACCTAGTG
66 GCACCCAGTG
** *
92256950 CTAGTTGGATTAACCGACGAT
1 CTAGTCAGATTAACCAACGAT
92256971 TGTGTGCCCA
Statistics
Matches: 80, Mismatches: 14, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
74 49 0.61
75 31 0.39
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (75 bp):
CTAGTCAGATTAACCAACGATAATAAATGTAAGCCCAGCTCTAGTTGGATAAACCAACAATAGTT
GCACCCAGTG
Found at i:92256930 original size:40 final size:35
Alignment explanation
Indices: 92256832--92256935 Score: 104
Period size: 34 Copynumber: 2.9 Consensus size: 35
92256822 ATCAAATGTG
* *
92256832 AGCCCAGCTCTAGTTGGATAAACCAACAATGTTGC
1 AGCCCAGGTCTAGTTGGATAAACCAACAATGTTGA
* *
92256867 A-CCCAGTGT-TAGTCGGATTAACCAACGATAATAGTTGTA
1 AGCCCAG-GTCTAGTTGGATAAACCAAC---AAT-GTTG-A
92256906 AGCCCAGGTCTAGTTGGATAAACCAACAAT
1 AGCCCAGGTCTAGTTGGATAAACCAACAAT
92256936 ATTTGCACCT
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
34 20 0.36
35 2 0.04
37 6 0.11
38 4 0.07
39 3 0.05
40 20 0.36
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (35 bp):
AGCCCAGGTCTAGTTGGATAAACCAACAATGTTGA
Done.