Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 267 of 290
Found at i:92279793 original size:31 final size:31
Alignment explanation
Indices: 92279747--92279823 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
92279737 AAAGGTAAAA
* *
92279747 TGATT-AAATTGACAACTTATCTAAT-GCGAG
1 TGATTAAAATTAACAACTTATCTAATAG-AAG
*
92279777 TGATTAAAATTAACAACTTATTTAATAGAAG
1 TGATTAAAATTAACAACTTATCTAATAGAAG
*
92279808 TGATTAAAAATAACAA
1 TGATTAAAATTAACAA
92279824 ATATTTTAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
30 5 0.12
31 35 0.85
32 1 0.02
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.32
Consensus pattern (31 bp):
TGATTAAAATTAACAACTTATCTAATAGAAG
Found at i:92285725 original size:23 final size:23
Alignment explanation
Indices: 92285695--92285741 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
92285685 GAGATGAAAA
*
92285695 AACATCAATTACATTAGACAACC
1 AACATCAATTACATAAGACAACC
92285718 AACATCAATTACATAAGACAACC
1 AACATCAATTACATAAGACAACC
92285741 A
1 A
92285742 TTGTCTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.51, C:0.26, G:0.04, T:0.19
Consensus pattern (23 bp):
AACATCAATTACATAAGACAACC
Found at i:92288688 original size:31 final size:31
Alignment explanation
Indices: 92288650--92288712 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
92288640 ACCGGTAAGT
92288650 TTACTTTCCAGTTATCCCGACTCACTAAGCA
1 TTACTTTCCAGTTATCCCGACTCACTAAGCA
* *
92288681 TTACTTTCCAGTTATCCGGACTTACTAAGCA
1 TTACTTTCCAGTTATCCCGACTCACTAAGCA
92288712 T
1 T
92288713 ATAAATACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.35
Consensus pattern (31 bp):
TTACTTTCCAGTTATCCCGACTCACTAAGCA
Found at i:92294919 original size:15 final size:15
Alignment explanation
Indices: 92294899--92294928 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
92294889 AAAAGTCATT
92294899 TTTTTTTAATTTTAA
1 TTTTTTTAATTTTAA
92294914 TTTTTTTAATTTTAA
1 TTTTTTTAATTTTAA
92294929 AATTTTATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTTTAATTTTAA
Found at i:92294934 original size:15 final size:15
Alignment explanation
Indices: 92294901--92294934 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
92294891 AAGTCATTTT
**
92294901 TTTTTAATTTTAATT
1 TTTTTAATTTTAAAA
92294916 TTTTTAATTTTAAAA
1 TTTTTAATTTTAAAA
92294931 TTTT
1 TTTT
92294935 ATGATAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTTAATTTTAAAA
Found at i:92301775 original size:11 final size:11
Alignment explanation
Indices: 92301729--92301785 Score: 51
Period size: 11 Copynumber: 4.9 Consensus size: 11
92301719 AAATATTATC
*
92301729 TTATTAATATT
1 TTATTAGTATT
*
92301740 TTAATAAGATATTT
1 TT-ATTAG-TA-TT
* *
92301754 TTTTTATTATT
1 TTATTAGTATT
92301765 TTATTAGTATT
1 TTATTAGTATT
92301776 TTATTAGTAT
1 TTATTAGTAT
92301786 ATAAAGAAAG
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
11 23 0.64
12 5 0.14
13 4 0.11
14 4 0.11
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (11 bp):
TTATTAGTATT
Found at i:92303650 original size:21 final size:21
Alignment explanation
Indices: 92303626--92303697 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 21
92303616 CCCTCTGAAA
92303626 TGAAATGTGTAAGACCATGGT
1 TGAAATGTGTAAGACCATGGT
* *
92303647 TGAAA-G-ATACCATGACAACATGAT
1 TGAAATGTGTA--A-GAC--CATGGT
92303671 ATGAAATGTGTAAGACCATGGT
1 -TGAAATGTGTAAGACCATGGT
92303693 TGAAA
1 TGAAA
92303698 GATACCATGG
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
19 2 0.05
20 1 0.03
21 11 0.28
22 8 0.21
24 8 0.21
25 6 0.15
26 1 0.03
27 2 0.05
ACGTcount: A:0.40, C:0.11, G:0.24, T:0.25
Consensus pattern (21 bp):
TGAAATGTGTAAGACCATGGT
Found at i:92303692 original size:46 final size:46
Alignment explanation
Indices: 92303625--92303852 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
92303615 GCCCTCTGAA
* *
92303625 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
92303671 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
92303717 ATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
92303763 ATAAAAAG-GATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTG-TAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * * *
92303809 AAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
92303853 TCAAAGATAA
Statistics
Matches: 166, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.01
46 164 0.99
47 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:92310197 original size:24 final size:26
Alignment explanation
Indices: 92310148--92310197 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
92310138 GAAAAGAAAT
92310148 TTTAATCAGGAAGCTCATGAAGAGCC
1 TTTAATCAGGAAGCTCATGAAGAGCC
* *
92310174 TTTAATTA-GAAGCTC-TGAATAGCC
1 TTTAATCAGGAAGCTCATGAAGAGCC
92310198 ATATATCGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 8 0.36
25 7 0.32
26 7 0.32
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (26 bp):
TTTAATCAGGAAGCTCATGAAGAGCC
Found at i:92310377 original size:65 final size:65
Alignment explanation
Indices: 92310227--92310379 Score: 198
Period size: 65 Copynumber: 2.4 Consensus size: 65
92310217 CGAGCCATAT
* * *
92310227 CAGGACGCTCACAAAGAGCTACGTTTGTATCCCCAGTATATGAAGGATCATAACCGATCATATAA
1 CAGGACGCTCACAAAGAGCTGCGTTTGTATCCCCAATATATGAAGGATCACAACCGATCATATAA
* * * ** * *
92310292 CAGGATGCTTACAAAGAGCTGCGTTTGTGTCTGCAATATATGTAGGATCACAACCGATCATATAG
1 CAGGACGCTCACAAAGAGCTGCGTTTGTATCCCCAATATATGAAGGATCACAACCGATCATATAA
* *
92310357 TAGGACACTCACAAAGAGCTGCG
1 CAGGACGCTCACAAAGAGCTGCG
92310380 ATAGTCCGCA
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
65 74 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (65 bp):
CAGGACGCTCACAAAGAGCTGCGTTTGTATCCCCAATATATGAAGGATCACAACCGATCATATAA
Found at i:92317114 original size:65 final size:65
Alignment explanation
Indices: 92316974--92317126 Score: 207
Period size: 65 Copynumber: 2.4 Consensus size: 65
92316964 CGAGCCATAT
* * **
92316974 CAGGATGCTCAAAAAGAGCTGTTTTTGTGTCTGTAATATATGCAGGATCACAACTGATCATATAA
1 CAGGATGCTCACAAAGAGCTGTGTTTGTGTCTACAATATATGCAGGATCACAACTGATCATATAA
* * * * *
92317039 CGGGGTGCTCACAAATAGCTGTGTTTGTGTCTACAATATATGCAGGATCATAACTGATCATATAG
1 CAGGATGCTCACAAAGAGCTGTGTTTGTGTCTACAATATATGCAGGATCACAACTGATCATATAA
* *
92317104 TAGGACGCTCACAAAGAGCTGTG
1 CAGGATGCTCACAAAGAGCTGTG
92317127 ATAGTCCGTA
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
65 74 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (65 bp):
CAGGATGCTCACAAAGAGCTGTGTTTGTGTCTACAATATATGCAGGATCACAACTGATCATATAA
Found at i:92320132 original size:36 final size:36
Alignment explanation
Indices: 92320085--92320156 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
92320075 TTCTCTAAAG
* * *
92320085 GTTAACATTTGACGTTCTTCTCTTAATCACCTTTAT
1 GTTAACATTTGACGCTCCTCTCTTAATCACCCTTAT
92320121 GTTAACATTTGACGCTCCTCTCTTAATCACCCTTAT
1 GTTAACATTTGACGCTCCTCTCTTAATCACCCTTAT
92320157 CTTTTTTCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.22, C:0.26, G:0.08, T:0.43
Consensus pattern (36 bp):
GTTAACATTTGACGCTCCTCTCTTAATCACCCTTAT
Found at i:92321875 original size:48 final size:48
Alignment explanation
Indices: 92321803--92321924 Score: 147
Period size: 48 Copynumber: 2.5 Consensus size: 48
92321793 TATGTGTGCT
* * * * **
92321803 AGTGTAAGACCATGTTTGGAACATGGCTTCTGCCACATTATG-AGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCGTCAGCCACAACATGTA-AGCC
* *
92321851 AGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCAACATGTAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCGTCAGCCACAACATGTAAGCC
*
92321899 AGTGTAATACCATGTCTGGGACATGG
1 AGTGTAAGACCATGTCTGGGACATGG
92321925 GATTGGCAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
48 63 0.98
49 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCGTCAGCCACAACATGTAAGCC
Found at i:92328942 original size:40 final size:40
Alignment explanation
Indices: 92328842--92329013 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
92328832 GCTCCTCGTT
* * *
92328842 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
92328882 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
92328921 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
92328961 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
92329001 CAAATGCCTTCGG
1 CAAATGCCTTCGG
92329014 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:92332947 original size:40 final size:39
Alignment explanation
Indices: 92332891--92333072 Score: 222
Period size: 40 Copynumber: 4.6 Consensus size: 39
92332881 GAAGTATAAA
*
92332891 CAGGGGCACGTATGTGCAATCAGATGTACCGAAATACAAG
1 CAGGGGCACGTATGTGCAATCAG-GGTACCGAAATACAAG
*
92332931 TAGGGGCACGTATGTGCAATCATGGGTACC-AAAGTACAAG
1 CAGGGGCACGTATGTGCAATCA-GGGTACCGAAA-TACAAG
* * *
92332971 TAGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAG
1 CAGGGGCACGTATGTGCAATCA-GGGTACCGAAATACAAG
* * * *
92333011 CAGGGGCACATATATGCAATCAGGGATACCGAAGTACAAA
1 CAGGGGCACGTATGTGCAATCAGGG-TACCGAAATACAAG
*
92333051 CAGAGGCACGTATGTGCAATCA
1 CAGGGGCACGTATGTGCAATCA
92333073 TGTATAATTA
Statistics
Matches: 125, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 6 0.05
40 116 0.93
41 3 0.02
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.18
Consensus pattern (39 bp):
CAGGGGCACGTATGTGCAATCAGGGTACCGAAATACAAG
Found at i:92333016 original size:80 final size:80
Alignment explanation
Indices: 92332882--92333072 Score: 258
Period size: 80 Copynumber: 2.4 Consensus size: 80
92332872 GAAATTACTG
* * * * *
92332882 AAGTATAAACAGGGGCACGTATGTGCAATCAGATGTACCGAAATACAAGTAGGGGCACGTATGTG
1 AAGTACAAACAGGGGCACGTATGTGCAATCAGAGGTACCGAAATACAAGCAGGGGCACATATATG
92332947 CAATCATGGG-TACCA
66 CAATCA-GGGATACCA
** * * *
92332962 AAGTACAAGTAGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAGCAGGGGCACATATATG
1 AAGTACAAACAGGGGCACGTATGTGCAATCAGAGGTACCGAAATACAAGCAGGGGCACATATATG
*
92333027 CAATCAGGGATACCG
66 CAATCAGGGATACCA
*
92333042 AAGTACAAACAGAGGCACGTATGTGCAATCA
1 AAGTACAAACAGGGGCACGTATGTGCAATCA
92333073 TGTATAATTA
Statistics
Matches: 96, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
79 3 0.03
80 93 0.97
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.18
Consensus pattern (80 bp):
AAGTACAAACAGGGGCACGTATGTGCAATCAGAGGTACCGAAATACAAGCAGGGGCACATATATG
CAATCAGGGATACCA
Found at i:92333567 original size:14 final size:14
Alignment explanation
Indices: 92333533--92333560 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
92333523 AACAATTTCA
92333533 ACAAAATTCACCTT
1 ACAAAATTCACCTT
92333547 ACAAAATTCACCTT
1 ACAAAATTCACCTT
92333561 TAAAAATATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (14 bp):
ACAAAATTCACCTT
Found at i:92336998 original size:25 final size:25
Alignment explanation
Indices: 92336970--92337026 Score: 114
Period size: 25 Copynumber: 2.3 Consensus size: 25
92336960 CTAGAATCAT
92336970 ATCAAACTCACCAAAAGGTAAAAAC
1 ATCAAACTCACCAAAAGGTAAAAAC
92336995 ATCAAACTCACCAAAAGGTAAAAAC
1 ATCAAACTCACCAAAAGGTAAAAAC
92337020 ATCAAAC
1 ATCAAAC
92337027 ATCAAACTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.56, C:0.25, G:0.07, T:0.12
Consensus pattern (25 bp):
ATCAAACTCACCAAAAGGTAAAAAC
Found at i:92344546 original size:13 final size:13
Alignment explanation
Indices: 92344528--92344554 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
92344518 AGATAGGTCT
92344528 AGGAACAAAAATA
1 AGGAACAAAAATA
92344541 AGGAACAAAAATA
1 AGGAACAAAAATA
92344554 A
1 A
92344555 TTGAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.15, T:0.07
Consensus pattern (13 bp):
AGGAACAAAAATA
Found at i:92345268 original size:18 final size:18
Alignment explanation
Indices: 92345245--92345280 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
92345235 TCATTCCCTA
92345245 AATATTTAATAAAAATAT
1 AATATTTAATAAAAATAT
92345263 AATATTTAATAAAAATAT
1 AATATTTAATAAAAATAT
92345281 TTACGTGCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
AATATTTAATAAAAATAT
Found at i:92347759 original size:30 final size:30
Alignment explanation
Indices: 92347725--92347785 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
92347715 TTCGCGAGCC
*
92347725 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
* * *
92347755 TAGGGACAAAATTGTAAATTTGCCAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
92347785 T
1 T
92347786 GAGTCCAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGACAAAAGTGTAAATATGCAAAAGTT
Found at i:92350038 original size:30 final size:30
Alignment explanation
Indices: 92349980--92350040 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
92349970 TTCCCGAGCC
* *
92349980 TAGGGGCAAAAGTGTAAATATGTAAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
* * *
92350010 TAGGGACAAAATTGTAAATTTGCCAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
92350040 T
1 T
92350041 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGACAAAAGTGTAAATATGCAAAAGTT
Found at i:92350678 original size:30 final size:30
Alignment explanation
Indices: 92350620--92350680 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
92350610 TTCCCGAGCC
* *
92350620 TAGGGGCAAAAGTGTAAATATGTAAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
* * *
92350650 TAGGGACAAAATTGTAAATTTGCCAAAGTT
1 TAGGGACAAAAGTGTAAATATGCAAAAGTT
92350680 T
1 T
92350681 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGACAAAAGTGTAAATATGCAAAAGTT
Found at i:92351345 original size:641 final size:640
Alignment explanation
Indices: 92349512--92351401 Score: 3530
Period size: 640 Copynumber: 3.0 Consensus size: 640
92349502 NNNNNNNNNN
92349512 GGTAATTAAAAGAAATAAAAAGGGAAAATAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCG
1 GGTAATTAAAAGAAATAAAAAGGGAAAATAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCG
92349577 AAATTAGCATGGGGGAAGCCATGGCTAGGGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTT
66 AAATTAGCATGGGGGAAGCCATGGCTAGGGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTT
*
92349642 CTAACCCCATTTTTCAAGTTCTTTACGTTTTGGAATCCCGGTAATTTGATTAAGCTTATTCTAGC
131 CTAACCCCATTTTTCAAGTTCTTTACGTTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGC
*
92349707 AATAATTTAAGCTAGGGTTCATATTTGGAAAAATACCCATAGGTGAAATGTGTTTATTTTGCTGT
196 AATAATTTAAGCTAGGGTTCATATTTGGAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGT
92349772 TTTATGATAGAATATGAGGTTTTAAATTATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAA
261 TTTATGATAGAATATGAGGTTTTAAATTATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAA
92349837 ACGAGTAGAAGGGCTTAATCGGTAAAAATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATT
326 ACGAGTAGAAGGGCTTAATCGGTAAAAATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATT
92349902 TGATGTTGCCATAGAAGAGAAAAGTGATCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTT
391 TGATGTTGCCATAGAAGAGAAAAGTGATCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTT
92349967 TAATTCCCGAGCCTAGGGGCAAAAGTGTAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTG
456 TAATTCCCGAGCCTAGGGGCAAAAGTGTAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTG
* *
92350032 CCAAAGTTTGAGTTAAGGACTGTCTTGAATAGTAAATTAATTAAATAAGTAAAATATGTTGTTTT
521 CCAAAGTTTGAGTTAAGGACTGTCTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTTTT
92350097 AGATCCCAGAAAACGAGATTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTC
586 AGATCCCAGAAAACGAGATTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTC
92350152 GGTAATTAAAAGAAATAAAAAGGGAAAATAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCG
1 GGTAATTAAAAGAAATAAAAAGGGAAAATAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCG
92350217 AAATTAGCATGGGGGAAGCCATGGCTAGGGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTT
66 AAATTAGCATGGGGGAAGCCATGGCTAGGGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTT
92350282 CTAACCCCATTTTTCAAGTTCTTTACGTTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGC
131 CTAACCCCATTTTTCAAGTTCTTTACGTTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGC
92350347 AATAATTTAAGCTAGGGTTCATATTTGGAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGT
196 AATAATTTAAGCTAGGGTTCATATTTGGAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGT
*
92350412 TTTATGTTAGAATATGAGGTTTTAAATTATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAA
261 TTTATGATAGAATATGAGGTTTTAAATTATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAA
92350477 ACGAGTAGAAGGGCTTAATCGGTAAAAATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATT
326 ACGAGTAGAAGGGCTTAATCGGTAAAAATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATT
92350542 TGATGTTGCCATAGAAGAGAAAAGTGATCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTT
391 TGATGTTGCCATAGAAGAGAAAAGTGATCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTT
92350607 TAATTCCCGAGCCTAGGGGCAAAAGTGTAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTG
456 TAATTCCCGAGCCTAGGGGCAAAAGTGTAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTG
92350672 CCAAAGTTTGAGTTAAGGACTGTCTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTTTT
521 CCAAAGTTTGAGTTAAGGACTGTCTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTTTT
92350737 AGATCCCAGAAAACGAGATTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTC
586 AGATCCCAGAAAACGAGATTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTC
92350792 GGTAATTAAAAGAAATAAAAAGGGAAAATAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCG
1 GGTAATTAAAAGAAATAAAAAGGGAAAATAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCG
* *
92350857 AAATTAGCATGGGGGAAGCCATGGCTAGGGTTTTCAAGCTTTCCAAGCTCAATTGTAAGTTTGTT
66 AAATTAGCATGGGGGAAGCCATGGCTAGGGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTT
* *
92350922 CTAACCCCATTTTTCAAGTTCTTTACATTTTTAGAATCCTGGTAATTTGATTAAGCTTATTCTAG
131 CTAACCCCATTTTTCAAGTTCTTTAC-GTTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAG
*
92350987 CAATAATTTAAGCTAGGGTTCATATTTGGAAAAATACCCATAGGTGAAATATGTTTATTTTGATG
195 CAATAATTTAAGCTAGGGTTCATATTTGGAAAAATACCCATAGGTGAAATGTGTTTATTTTGATG
* * * *
92351052 TTTTATGATAGAATATAAGGTTTTAAATTATGTTAGAAAACTTGTGCTACTCGGTTTTTAGTGAA
260 TTTTATGATAGAATATGAGGTTTTAAATTATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAA
* *
92351117 AACGAGTAAAAGGGCTTAATCGGTAAAAATAGCTAATAGTCATAAGTATATGTTAGAGTGAGAAT
325 AACGAGTAGAAGGGCTTAATCGGTAAAAATACCTAATAGTCATAAGTATATGTTAGAGTGAGAAT
* *
92351182 TTGATGTTGCCATAGAAGACAAAAGTGATCAGCATGTCATAAAACATAAGAATAAGGGATGAAGT
390 TTGATGTTGCCATAGAAGAGAAAAGTGATCAGCATGTCATAAAACATAAGAATAAGGGATGGAGT
** *
92351247 TTAATTCCCGAGCCTAAAGG-AAACAGTGTAAATATGCAAAAGTTTAGGGACAAAATTGTAAATT
455 TTAATTCCCGAGCCTAGGGGCAAA-AGTGTAAATATGTAAAAGTTTAGGGACAAAATTGTAAATT
* *
92351311 TGCCAAAGTTTGAGTTAAGGACTGTTTTGAATAGTACATTAATTAAATAAGTAAAATATAATGTT
519 TGCCAAAGTTTGAGTTAAGGACTGTCTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTT
* *
92351376 TTAGATCCCAGAAAATGGGATTTGAA
584 TTAGATCCCAGAAAACGAGATTTGAA
92351402 CCTAGAATGA
Statistics
Matches: 1222, Mismatches: 26, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
640 792 0.65
641 430 0.35
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (640 bp):
GGTAATTAAAAGAAATAAAAAGGGAAAATAAAGCCAAAATTGACTCATCTTTTTCATGGAGGCCG
AAATTAGCATGGGGGAAGCCATGGCTAGGGTTTTCAAGCTTTCCAAGCTCAATCGTAAGTCTGTT
CTAACCCCATTTTTCAAGTTCTTTACGTTTTAGAATCCCGGTAATTTGATTAAGCTTATTCTAGC
AATAATTTAAGCTAGGGTTCATATTTGGAAAAATACCCATAGGTGAAATGTGTTTATTTTGATGT
TTTATGATAGAATATGAGGTTTTAAATTATGTTAGACAACTTGTGCTACTCGATTTTGAGTGAAA
ACGAGTAGAAGGGCTTAATCGGTAAAAATACCTAATAGTCATAAGTATATGTTAGAGTGAGAATT
TGATGTTGCCATAGAAGAGAAAAGTGATCAGCATGTCATAAAACATAAGAATAAGGGATGGAGTT
TAATTCCCGAGCCTAGGGGCAAAAGTGTAAATATGTAAAAGTTTAGGGACAAAATTGTAAATTTG
CCAAAGTTTGAGTTAAGGACTGTCTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTTTT
AGATCCCAGAAAACGAGATTTGAAAGTTTAGTAAGGAATGGCATTTTGGTCATTC
Found at i:92352136 original size:64 final size:66
Alignment explanation
Indices: 92351980--92352152 Score: 165
Period size: 68 Copynumber: 2.6 Consensus size: 66
92351970 TGGATGATAT
* * * * * *
92351980 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGCATACAAGAGAGCTACA
1 AGATA-TATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGCAGACAAGAGAGCTACA
92352045 AG
65 AG
* * * * * *
92352047 ACATTATGATGTAGATAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC
1 AGA-TAT-ATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGCAGACAAGAGAGCTAC
92352112 -AG
64 AAG
92352114 -GATATATGTAGCTAGGTCGCAT-G-TGTAGTACTAAGTGCA
1 AGATATATGTAGCTAGGTCGCATGGATG-A-TACTAAGTGCA
92352153 GGCTACTATG
Statistics
Matches: 86, Mismatches: 16, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
62 2 0.02
63 2 0.02
64 25 0.29
65 3 0.03
66 1 0.01
67 5 0.06
68 48 0.56
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (66 bp):
AGATATATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGCAGACAAGAGAGCTACAA
G
Found at i:92358743 original size:43 final size:43
Alignment explanation
Indices: 92358695--92358816 Score: 147
Period size: 43 Copynumber: 2.8 Consensus size: 43
92358685 ATCGAGATAT
* *
92358695 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-A
* * *
92358738 GATTACTTGTAAGACCATGTCTGGGACATAGGCATCGTTAATC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTTAATA
* * * *
92358781 GATTACGTGTAATACCTTGTCTGGGACAGTGGCATC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATC
92358817 TATATGTGTT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 65 0.96
44 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTTAATA
Found at i:92360855 original size:118 final size:118
Alignment explanation
Indices: 92360647--92360885 Score: 451
Period size: 118 Copynumber: 2.0 Consensus size: 118
92360637 ATTATGCCTT
92360647 TGTCAATTTAGAAAATAATTAAGGCCTTAAGTTGGAATCAATTTTGTGACGCACGATCATTGCCT
1 TGTCAATTTAGAAAATAATTAAGGCCTTAAGTTGGAATCAATTTTGTGACGCACGATCATTGCCT
92360712 GAAGAGGAATTAATATCAGAGTTCTATGCCAATTTAACCACGCCAGATGCTTC
66 GAAGAGGAATTAATATCAGAGTTCTATGCCAATTTAACCACGCCAGATGCTTC
92360765 TGTCAATTTAGAAAATAATTAAGGCCTTAAGTTGGAATCAATTTTGTGACGCACGATCATTGCCT
1 TGTCAATTTAGAAAATAATTAAGGCCTTAAGTTGGAATCAATTTTGTGACGCACGATCATTGCCT
* * *
92360830 GAAGAGGATTTAATATGAGAGTTCTATGCCAATTTAACCACGCCGGATGCTTC
66 GAAGAGGAATTAATATCAGAGTTCTATGCCAATTTAACCACGCCAGATGCTTC
92360883 TGT
1 TGT
92360886 AGTTCTTGTT
Statistics
Matches: 118, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
118 118 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (118 bp):
TGTCAATTTAGAAAATAATTAAGGCCTTAAGTTGGAATCAATTTTGTGACGCACGATCATTGCCT
GAAGAGGAATTAATATCAGAGTTCTATGCCAATTTAACCACGCCAGATGCTTC
Found at i:92369225 original size:40 final size:40
Alignment explanation
Indices: 92369170--92369414 Score: 322
Period size: 40 Copynumber: 6.2 Consensus size: 40
92369160 CGGATGATAA
92369170 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTATA-TCCGGGCTAAGTCC
92369210 CGAAGGCATTTGTGCTAGTGACTA-ATCCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTATAT-CCGGGCTAAGTCC
* *
92369250 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCC
*
92369290 CGAAGGCATTTGTG-TGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCT-AGTGACTATATCCGGGCTAAGTCC
* *
92369330 CGAAGGCATTGGTGCGAGCT-ACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCC
* * * *
92369370 CGAAGGCATTTGAGCGAGT-AGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCTAGTGA-CTATATCCGGGCTAAGTCC
92369409 CGAAGG
1 CGAAGG
92369415 TACTTGGTTT
Statistics
Matches: 190, Mismatches: 9, Indels: 13
0.90 0.04 0.06
Matches are distributed among these distances:
39 17 0.09
40 170 0.89
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCC
Found at i:92376824 original size:13 final size:13
Alignment explanation
Indices: 92376806--92376831 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92376796 ATATTATAAT
92376806 TATTTTATGTTAA
1 TATTTTATGTTAA
92376819 TATTTTATGTTAA
1 TATTTTATGTTAA
92376832 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:92378255 original size:40 final size:40
Alignment explanation
Indices: 92378207--92378332 Score: 184
Period size: 40 Copynumber: 3.2 Consensus size: 40
92378197 GGACTAAGAT
92378207 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
92378247 CCGAAGGCATTTGTGCTAGTGATTATATCAGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
92378287 CCGAAGGCATTTATGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
92378326 CCGAAGG
1 CCGAAGG
92378333 TACTTGGGTT
Statistics
Matches: 78, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 15 0.19
40 61 0.78
41 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:92386607 original size:40 final size:39
Alignment explanation
Indices: 92386509--92386771 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
92386499 TCCTCGTTCA
* * * *
92386509 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
92386548 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
92386587 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
92386627 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
92386667 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
92386707 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
92386748 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
92386772 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:92386731 original size:120 final size:119
Alignment explanation
Indices: 92386509--92386771 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
92386499 TCCTCGTTCA
* * *
92386509 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
92386574 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
92386627 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
92386692 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
92386748 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
92386772 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:92386780 original size:41 final size:41
Alignment explanation
Indices: 92386703--92386780 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
92386693 TTTGTATCTC
* * *
92386703 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
92386744 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
92386781 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:92393431 original size:102 final size:102
Alignment explanation
Indices: 92393255--92393461 Score: 396
Period size: 102 Copynumber: 2.0 Consensus size: 102
92393245 AAATCAGTTT
*
92393255 TGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGTATTTTTTTCTAGAATTTTTGGTC
1 TGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGTATTTTTTTCTAGAACTTTTGGTC
92393320 AGGCCAATTAGTACAGTTTATTAATCAAAGTCTCCCA
66 AGGCCAATTAGTACAGTTTATTAATCAAAGTCTCCCA
92393357 TGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGTATTTTTTTCTAGAACTTTTGGTC
1 TGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGTATTTTTTTCTAGAACTTTTGGTC
*
92393422 AGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCA
66 AGGCCAATTAGTACAGTTTATTAATCAAAGTCTCCCA
92393459 TGT
1 TGT
92393462 TACAGGGGTC
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 103 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (102 bp):
TGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGTATTTTTTTCTAGAACTTTTGGTC
AGGCCAATTAGTACAGTTTATTAATCAAAGTCTCCCA
Found at i:92394695 original size:40 final size:40
Alignment explanation
Indices: 92394595--92394766 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
92394585 GCTCCTCGTT
* * *
92394595 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* *
92394635 C-AATGCCTTCGGGACATAACCCAGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
92394674 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
92394714 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
92394754 CAAATGCCTTCGG
1 CAAATGCCTTCGG
92394767 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 79 0.68
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:92394779 original size:80 final size:79
Alignment explanation
Indices: 92394595--92394819 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
92394585 GCTCCTCGTT
* * * * * *
92394595 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCAG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
92394659 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
92394674 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
92394739 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
92394754 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
92394818 GA
63 GA
92394820 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 68 0.56
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:92394828 original size:41 final size:41
Alignment explanation
Indices: 92394751--92394828 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
92394741 TTTGTATCTC
* * *
92394751 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
92394792 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
92394829 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:92409068 original size:13 final size:13
Alignment explanation
Indices: 92409050--92409075 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92409040 ATATTATAAT
92409050 TATTTTATGTTAA
1 TATTTTATGTTAA
92409063 TATTTTATGTTAA
1 TATTTTATGTTAA
92409076 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:92410535 original size:166 final size:166
Alignment explanation
Indices: 92410261--92410588 Score: 656
Period size: 166 Copynumber: 2.0 Consensus size: 166
92410251 AATGGTAAAG
92410261 GTTGATAAGTGTCTTGTGTTTGAGTTCTAGTAATGAAAATGAAATATAAATGTGTTATGATTTAT
1 GTTGATAAGTGTCTTGTGTTTGAGTTCTAGTAATGAAAATGAAATATAAATGTGTTATGATTTAT
92410326 TGATATATGTGCATGATTATTCGGATGATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTGA
66 TGATATATGTGCATGATTATTCGGATGATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTGA
92410391 CTATATCCGGGCTAAGTCCCGAAGGCATTTGTACTA
131 CTATATCCGGGCTAAGTCCCGAAGGCATTTGTACTA
92410427 GTTGATAAGTGTCTTGTGTTTGAGTTCTAGTAATGAAAATGAAATATAAATGTGTTATGATTTAT
1 GTTGATAAGTGTCTTGTGTTTGAGTTCTAGTAATGAAAATGAAATATAAATGTGTTATGATTTAT
92410492 TGATATATGTGCATGATTATTCGGATGATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTGA
66 TGATATATGTGCATGATTATTCGGATGATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTGA
92410557 CTATATCCGGGCTAAGTCCCGAAGGCATTTGT
131 CTATATCCGGGCTAAGTCCCGAAGGCATTTGT
92410589 GCGAGTTGCT
Statistics
Matches: 162, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
166 162 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (166 bp):
GTTGATAAGTGTCTTGTGTTTGAGTTCTAGTAATGAAAATGAAATATAAATGTGTTATGATTTAT
TGATATATGTGCATGATTATTCGGATGATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTGA
CTATATCCGGGCTAAGTCCCGAAGGCATTTGTACTA
Found at i:92410620 original size:39 final size:40
Alignment explanation
Indices: 92410535--92410620 Score: 131
Period size: 40 Copynumber: 2.2 Consensus size: 40
92410525 GGACTAAGAT
* *
92410535 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAATC
92410575 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAATC
92410614 CCGAAGG
1 CCGAAGG
92410621 TACTTGGGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
39 15 0.35
40 26 0.60
41 2 0.05
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAATC
Found at i:92412777 original size:46 final size:44
Alignment explanation
Indices: 92412630--92412794 Score: 154
Period size: 46 Copynumber: 3.5 Consensus size: 44
92412620 AGGTCGACAC
* * *
92412630 CATGTCCCAGACATAGTCTTACACTAGCTCTCACATATACGT-GTCGATG
1 CATGTCCCAGACAT-GTCTTACACT-G---ACACATCT-CGTAGCCGATG
92412679 CCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGACACATCTCGTAGCCGATG
* * *
92412725 CATGTCCCAGACATGTCTTACACTGGCTTCTATCTCG-AGGCCGGTG
1 CATGTCCCAGACATGTCTTACACTGAC-AC-ATCTCGTA-GCCGATG
*
92412771 CATGTCCCAAACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
92412795 AGCTCTTGTA
Statistics
Matches: 103, Mismatches: 8, Indels: 12
0.84 0.07 0.10
Matches are distributed among these distances:
44 12 0.12
45 19 0.18
46 47 0.46
49 1 0.01
50 24 0.23
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACATCTCGTAGCCGATG
Found at i:92412837 original size:94 final size:92
Alignment explanation
Indices: 92412720--92412891 Score: 231
Period size: 94 Copynumber: 1.8 Consensus size: 92
92412710 ATCTCGTAGC
* *
92412720 CGATGCATGTCCCAGACATGTCTTACACTGGCT-TC-TATCTCGAGGCCGGTGCATGTCCCAAAC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCTTA-AT-GAGGCCGATGCATGTCCCAAAC
92412783 ATGTCTTACACTAGCTCTTGTATAAATGT
64 ATGTCTTACACTAGCTCTTGTATAAATGT
* * * **
92412812 CGATGCCATGTTCCAGACATGGTCTTACATTGGCTCTCTTAATGTGGCCGATGCATGTCCCGGAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCTTAATGAGGCCGATGCATGTCCCAAAC
92412877 ATGTCTTACACTAGC
64 ATGTCTTACACTAGC
92412892 ACACAAATAA
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 5 0.07
93 13 0.19
94 46 0.67
95 3 0.04
96 2 0.03
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCTTAATGAGGCCGATGCATGTCCCAAACAT
GTCTTACACTAGCTCTTGTATAAATGT
Found at i:92412872 original size:140 final size:140
Alignment explanation
Indices: 92412630--92412888 Score: 353
Period size: 140 Copynumber: 1.8 Consensus size: 140
92412620 AGGTCGACAC
* **
92412630 CATGTCCCAGACATAGTCTTACACTAGCTCTCACATATACGTGTCGATGCCATGTCCCAGACATG
1 CATGTCCCAAACATAGTCTTACACTAGCTCT-ACATATAAATGTCGATGCCATGTCCCAGACATG
92412695 GTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCTATCT
65 GTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCTATCT
92412760 CGAGGCCGGTG
130 CGAGGCCGGTG
** *
92412771 CATGTCCCAAACAT-GTCTTACACTAGCTCT-TGTATAAATGTCGATGCCATGTTCCAGACATGG
1 CATGTCCCAAACATAGTCTTACACTAGCTCTACATATAAATGTCGATGCCATGTCCCAGACATGG
* * * * * *
92412834 TCTTACATTGGCTC-TCTTAATGTGGCCGATGCATGTCCCGGACATGTCTTACACT
66 TCTTACACTGACACATC-T--CGTAGCCGATGCATGTCCCAGACATGTCTTACACT
92412889 AGCACACAAA
Statistics
Matches: 103, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
137 2 0.02
138 40 0.39
140 48 0.47
141 13 0.13
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (140 bp):
CATGTCCCAAACATAGTCTTACACTAGCTCTACATATAAATGTCGATGCCATGTCCCAGACATGG
TCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCTATCTC
GAGGCCGGTG
Found at i:92418564 original size:40 final size:40
Alignment explanation
Indices: 92418509--92418620 Score: 188
Period size: 40 Copynumber: 2.8 Consensus size: 40
92418499 TATTCGAATG
* *
92418509 ATATCCGGGCTAAGTCCCGAAGTCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
92418549 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
92418589 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
92418621 AAGTTAATAT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:92418632 original size:40 final size:40
Alignment explanation
Indices: 92418509--92418644 Score: 170
Period size: 40 Copynumber: 3.5 Consensus size: 40
92418499 TATTCGAATG
* * * *
92418509 ATATCCGGGCTAAGTCCCGAAGTCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTACT
*
92418549 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTT-ACT
* *
92418589 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTAAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTACT
*
92418629 ATATTC-GGCTAA-ACCC
1 ATATCCGGGCTAAGACCC
92418645 CAAAGGTACT
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
38 4 0.05
39 7 0.08
40 74 0.85
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTACT
Found at i:92430081 original size:12 final size:13
Alignment explanation
Indices: 92430063--92430099 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
92430053 TTTTTTATCC
92430063 TAATAAAATAAAA
1 TAATAAAATAAAA
92430076 -AATAAAATAAAA
1 TAATAAAATAAAA
*
92430088 TATTAAAATAAA
1 TAATAAAATAAA
92430100 TCGTTTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 12 0.55
13 10 0.45
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
TAATAAAATAAAA
Found at i:92430086 original size:17 final size:18
Alignment explanation
Indices: 92430064--92430099 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
92430054 TTTTTATCCT
92430064 AATAAAATA-AAAAATAA
1 AATAAAATATAAAAATAA
*
92430081 AATAAAATATTAAAATAA
1 AATAAAATATAAAAATAA
92430099 A
1 A
92430100 TCGTTTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (18 bp):
AATAAAATATAAAAATAA
Found at i:92432031 original size:17 final size:18
Alignment explanation
Indices: 92432011--92432044 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
92432001 AAGTGAATTG
92432011 AAATTGC-GAAACTAAAT
1 AAATTGCAGAAACTAAAT
*
92432028 AAATTGCAGAAATTAAA
1 AAATTGCAGAAACTAAA
92432045 ATGAGGAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.09, G:0.12, T:0.24
Consensus pattern (18 bp):
AAATTGCAGAAACTAAAT
Found at i:92432793 original size:20 final size:20
Alignment explanation
Indices: 92432764--92432815 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
92432754 AATGAAATTC
92432764 TAAAAGATAAATACAA-ATAAA
1 TAAAA-ATAAATA-AAGATAAA
*
92432785 TAAAAATAATTAAAGATAAA
1 TAAAAATAAATAAAGATAAA
*
92432805 TGAAAATAAAT
1 TAAAAATAAAT
92432816 TTTAAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.07
20 20 0.74
21 5 0.19
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.23
Consensus pattern (20 bp):
TAAAAATAAATAAAGATAAA
Found at i:92434457 original size:29 final size:29
Alignment explanation
Indices: 92434415--92434474 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
92434405 TGCAATGGTT
92434415 AGTTTGGAGTTCAATTCTATACATGCTTG
1 AGTTTGGAGTTCAATTCTATACATGCTTG
92434444 AGTTTGGAGTTCAATTCTATACATGCTTG
1 AGTTTGGAGTTCAATTCTATACATGCTTG
92434473 AG
1 AG
92434475 AAATGTATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.40
Consensus pattern (29 bp):
AGTTTGGAGTTCAATTCTATACATGCTTG
Found at i:92434676 original size:29 final size:29
Alignment explanation
Indices: 92434634--92434696 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
92434624 GAATATAGCA
92434634 TTATATAATCAATCTTAAAAAGGACAAAG
1 TTATATAATCAATCTTAAAAAGGACAAAG
*
92434663 TTATATAATCAATCTTAAAAAGGATAAAG
1 TTATATAATCAATCTTAAAAAGGACAAAG
92434692 TTATA
1 TTATA
92434697 ACTATGGTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.32
Consensus pattern (29 bp):
TTATATAATCAATCTTAAAAAGGACAAAG
Found at i:92435913 original size:26 final size:26
Alignment explanation
Indices: 92435878--92435931 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
92435868 TATATGATTA
92435878 ACACATGAGATAGTGACAAAACGTTC
1 ACACATGAGATAGTGACAAAACGTTC
92435904 ACACATGAGATAGTGACAAAACGTTC
1 ACACATGAGATAGTGACAAAACGTTC
92435930 AC
1 AC
92435932 TAGTGTTGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.19
Consensus pattern (26 bp):
ACACATGAGATAGTGACAAAACGTTC
Found at i:92438297 original size:25 final size:24
Alignment explanation
Indices: 92438256--92438303 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
92438246 CTAGGGTTAC
* *
92438256 CGATCTCAGCTCTTATGAGCTTAT
1 CGATCTCAACTCGTATGAGCTTAT
92438280 CGATACTCAACTCGTATGAGCTTA
1 CGAT-CTCAACTCGTATGAGCTTA
92438304 CCATTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (24 bp):
CGATCTCAACTCGTATGAGCTTAT
Found at i:92439505 original size:56 final size:56
Alignment explanation
Indices: 92439433--92439568 Score: 146
Period size: 56 Copynumber: 2.4 Consensus size: 56
92439423 TTAAAGAGCA
* * ** * *
92439433 CAAGTCAGTATGCTCACACGGTTTAGCATACAGATGTGTAGCTTGGCCGTGTGACC
1 CAAGTCAATATACTCACACGGCATAGCACACAGACGTGTAGCTTGGCCGTGTGACC
* * * *
92439489 CAAGTCAATATACTCACACGGCATAGCACACAGACGTGTGGTTTGGCCGTGTGTCA
1 CAAGTCAATATACTCACACGGCATAGCACACAGACGTGTAGCTTGGCCGTGTGACC
* * *
92439545 CAAGTTAGTATACCCACACAGGCA
1 CAAGTCAATATACTCACAC-GGCA
92439569 CGGACACGGG
Statistics
Matches: 66, Mismatches: 13, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
56 62 0.94
57 4 0.06
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (56 bp):
CAAGTCAATATACTCACACGGCATAGCACACAGACGTGTAGCTTGGCCGTGTGACC
Found at i:92441343 original size:27 final size:27
Alignment explanation
Indices: 92441296--92441356 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
92441286 ATGACATCGT
* *
92441296 GGATAGTCCACTGGGACAATAAATACG
1 GGATAGTCCACTGAGACAATAAACACG
* *
92441323 GGATAGTCCA-TCGAGATAATAAGCACG
1 GGATAGTCCACT-GAGACAATAAACACG
92441350 GGATAGT
1 GGATAGT
92441357 ATGTTGGGAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (27 bp):
GGATAGTCCACTGAGACAATAAACACG
Found at i:92444257 original size:48 final size:48
Alignment explanation
Indices: 92444196--92444422 Score: 225
Period size: 48 Copynumber: 4.8 Consensus size: 48
92444186 CACATGGTAG
* * * *
92444196 GATGCCAATGCCATATCCCGGATATGGTTTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * ** **
92444244 GATGCCAACGCCATGTCCCAAACATGGTCTTACATGGGATCGTAGGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
*
92444292 GATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * *
92444340 GATGCCGAT---A-G-CCTAG-CTATGGTCTTACAT-GAAGTTACATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGA-TCACATATC
* * *
92444383 GATGCCAAAGCCATGTTCCAAACATGGTCTTACATGGGAT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
92444423 TGTACATAAC
Statistics
Matches: 142, Mismatches: 28, Indels: 18
0.76 0.15 0.10
Matches are distributed among these distances:
42 3 0.02
43 30 0.21
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 102 0.72
49 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:92452308 original size:30 final size:30
Alignment explanation
Indices: 92452274--92452336 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
92452264 AAATATGGTA
92452274 CTAGAATAAATTTTGAATTGACAATTTATG
1 CTAGAATAAATTTTGAATTGACAATTTATG
92452304 CTAGAATAAATTTTGAATTGACAATTTATG
1 CTAGAATAAATTTTGAATTGACAATTTATG
92452334 CTA
1 CTA
92452337 TTTGAATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.40
Consensus pattern (30 bp):
CTAGAATAAATTTTGAATTGACAATTTATG
Found at i:92453538 original size:10 final size:10
Alignment explanation
Indices: 92453520--92453571 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
92453510 ATTATTAACA
*
92453520 TAATGAATTT
1 TAATTAATTT
92453530 TAATTAATTTT
1 TAATTAA-TTT
92453541 ATAATTAATTT
1 -TAATTAATTT
*
92453552 TGATTAATTT
1 TAATTAATTT
*
92453562 TGATT-ATTT
1 TAATTAATTT
92453571 T
1 T
92453572 CGATAGATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
9 5 0.13
10 20 0.53
11 6 0.16
12 7 0.18
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.60
Consensus pattern (10 bp):
TAATTAATTT
Found at i:92453544 original size:22 final size:22
Alignment explanation
Indices: 92453519--92453562 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
92453509 AATTATTAAC
92453519 ATAATGAATTTTAATTAATTTT
1 ATAATGAATTTTAATTAATTTT
* *
92453541 ATAATTAATTTTGATTAATTTT
1 ATAATGAATTTTAATTAATTTT
92453563 GATTATTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
ATAATGAATTTTAATTAATTTT
Found at i:92463838 original size:151 final size:151
Alignment explanation
Indices: 92463643--92463946 Score: 608
Period size: 151 Copynumber: 2.0 Consensus size: 151
92463633 TAGCCCGGAT
92463643 ATCATCCGAATAATCATGCACATATCTCAATAAATCATAACACATCTATTTTTCATTTTTCGTTA
1 ATCATCCGAATAATCATGCACATATCTCAATAAATCATAACACATCTATTTTTCATTTTTCGTTA
92463708 CTAGAACTCAAACACAAGACACTTATCAACCATTACCATTTTCGGCTCAATAGCCACATACAAAG
66 CTAGAACTCAAACACAAGACACTTATCAACCATTACCATTTTCGGCTCAATAGCCACATACAAAG
92463773 AGCATGATTTTGATTTGCTTC
131 AGCATGATTTTGATTTGCTTC
92463794 ATCATCCGAATAATCATGCACATATCTCAATAAATCATAACACATCTATTTTTCATTTTTCGTTA
1 ATCATCCGAATAATCATGCACATATCTCAATAAATCATAACACATCTATTTTTCATTTTTCGTTA
92463859 CTAGAACTCAAACACAAGACACTTATCAACCATTACCATTTTCGGCTCAATAGCCACATACAAAG
66 CTAGAACTCAAACACAAGACACTTATCAACCATTACCATTTTCGGCTCAATAGCCACATACAAAG
92463924 AGCATGATTTTGATTTGCTTC
131 AGCATGATTTTGATTTGCTTC
92463945 AT
1 AT
92463947 AACATGATCT
Statistics
Matches: 153, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
151 153 1.00
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.33
Consensus pattern (151 bp):
ATCATCCGAATAATCATGCACATATCTCAATAAATCATAACACATCTATTTTTCATTTTTCGTTA
CTAGAACTCAAACACAAGACACTTATCAACCATTACCATTTTCGGCTCAATAGCCACATACAAAG
AGCATGATTTTGATTTGCTTC
Found at i:92468422 original size:6 final size:6
Alignment explanation
Indices: 92468413--92468438 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
92468403 TTTATTATTA
92468413 TTAATT TTAATT TTAATT TTAATT TT
1 TTAATT TTAATT TTAATT TTAATT TT
92468439 CCTTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTAATT
Found at i:92470005 original size:46 final size:46
Alignment explanation
Indices: 92469953--92470122 Score: 250
Period size: 46 Copynumber: 3.7 Consensus size: 46
92469943 GGATATTTGG
*
92469953 ACATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAA
1 ACATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA
* * * *
92469999 ACATCCGGACTCGTTGAGTTGAGTCTGAGTTCACATATGGATGCGA
1 ACATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA
*
92470045 ACATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTA
1 ACATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA
* * * *
92470091 ACGTCCAAAGTCGTTGAGTTGAGTCTGAGTTC
1 ACATCCGAACTCGTTGAGTTGAGTCCGAGTTC
92470123 GTGAAATGTA
Statistics
Matches: 111, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 111 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (46 bp):
ACATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA
Found at i:92470110 original size:92 final size:92
Alignment explanation
Indices: 92469953--92470122 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
92469943 GGATATTTGG
**
92469953 ACATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACATCCGGACTCGTTGAGT
1 ACATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACATCCAAACTCGTTGAGT
92470018 TGAGTCTGAGTTCACATATGGATGCGA
66 TGAGTCTGAGTTCACATATGGATGCGA
* * * *
92470045 ACATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAACGTCCAAAGTCGTTGAGT
1 ACATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACATCCAAACTCGTTGAGT
92470110 TGAGTCTGAGTTC
66 TGAGTCTGAGTTC
92470123 GTGAAATGTA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 72 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (92 bp):
ACATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACATCCAAACTCGTTGAGT
TGAGTCTGAGTTCACATATGGATGCGA
Found at i:92478170 original size:48 final size:48
Alignment explanation
Indices: 92478113--92478295 Score: 162
Period size: 48 Copynumber: 3.9 Consensus size: 48
92478103 CACATGGTAG
* * *
92478113 GATGCCAATGCCATATCCCGGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATCGTCTTACATGGGATCACATATC
* *
92478161 GATGCCAATGCCATGTCCCAGACATCGTCTTACATGGGATCACATATT
1 GATGCCAATGCCATATCCCAGACATCGTCTTACATGGGATCACATATC
* * * * ** *
92478209 GATGCC---G--ATAGCTCA-ACTATGGTCTTACACGAAATTACATATC
1 GATGCCAATGCCATATCCCAGAC-ATCGTCTTACATGGGATCACATATC
* * * * *
92478252 GATGCCAAAGCCATGTCCCAGACATGGTCTTACTTGGGACCACA
1 GATGCCAATGCCATATCCCAGACATCGTCTTACATGGGATCACA
92478296 CATAACCCTA
Statistics
Matches: 105, Mismatches: 23, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
42 2 0.02
43 30 0.29
45 1 0.01
46 1 0.01
48 69 0.66
49 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATCGTCTTACATGGGATCACATATC
Found at i:92478576 original size:30 final size:30
Alignment explanation
Indices: 92478540--92478599 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
92478530 ATACTTTTCT
92478540 GTGATAGAGTGATGATATTTAAATTGACTA
1 GTGATAGAGTGATGATATTTAAATTGACTA
92478570 GTGATAGAGTGATGATATTTAAATTGACTA
1 GTGATAGAGTGATGATATTTAAATTGACTA
92478600 TAAAATATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.03, G:0.23, T:0.37
Consensus pattern (30 bp):
GTGATAGAGTGATGATATTTAAATTGACTA
Found at i:92481178 original size:4 final size:4
Alignment explanation
Indices: 92481169--92481208 Score: 62
Period size: 4 Copynumber: 10.0 Consensus size: 4
92481159 AAATATGCCC
* *
92481169 TAGA TAGA TAGA TAGA TAGA TAAA TTGA TAGA TAGA TAGA
1 TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA TAGA
92481209 GGTGAAAGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.23, T:0.28
Consensus pattern (4 bp):
TAGA
Found at i:92488716 original size:13 final size:13
Alignment explanation
Indices: 92488698--92488722 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92488688 AACAATGCCA
92488698 GACACGGCCGTGC
1 GACACGGCCGTGC
92488711 GACACGGCCGTG
1 GACACGGCCGTG
92488723 TGCACCCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.08
Consensus pattern (13 bp):
GACACGGCCGTGC
Found at i:92499231 original size:43 final size:43
Alignment explanation
Indices: 92499152--92499268 Score: 173
Period size: 43 Copynumber: 2.7 Consensus size: 43
92499142 CTAAGATTAT
* * * *
92499152 GTGTAAGACCATATCTGAGATA-TGGCATCGATATGAGACTTC
1 GTGTAAGACCATAGCTGGGCTATTGGCATCGACATGAGACTTC
*
92499194 GTGTAAGACCATAGCTGGGCTATTGGCATCGACATGAGACTTT
1 GTGTAAGACCATAGCTGGGCTATTGGCATCGACATGAGACTTC
*
92499237 GTGTAAGACCATAGCTAGGCTATTGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATTGGCATCGA
92499269 TATAAGATCC
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 19 0.28
43 49 0.72
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATTGGCATCGACATGAGACTTC
Found at i:92499290 original size:43 final size:43
Alignment explanation
Indices: 92499153--92499292 Score: 124
Period size: 43 Copynumber: 3.3 Consensus size: 43
92499143 TAAGATTATG
* * * * * *
92499153 TGTAAGACCATATCT-GAGATA-TGGCATCGATATGAGACTTCG
1 TGTAAGACCATAGCTAG-GCTATTGGCATCGACATAAGACTCCA
* * ***
92499195 TGTAAGACCATAGCTGGGCTATTGGCATCGACATGAGACTTTG
1 TGTAAGACCATAGCTAGGCTATTGGCATCGACATAAGACTCCA
*
92499238 TGTAAGACCATAGCTAGGCTATTGGCATCGATATAAGA-TCCCA
1 TGTAAGACCATAGCTAGGCTATTGGCATCGACATAAGACT-CCA
*
92499281 TGTATGACCATA
1 TGTAAGACCATA
92499293 TCTGGGATAT
Statistics
Matches: 84, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
42 18 0.21
43 66 0.79
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATAGCTAGGCTATTGGCATCGACATAAGACTCCA
Found at i:92499298 original size:86 final size:84
Alignment explanation
Indices: 92499151--92499307 Score: 192
Period size: 86 Copynumber: 1.8 Consensus size: 84
92499141 ACTAAGATTA
* * * * *
92499151 TGTGTAAGACCATATCTGAGATATGGCATCGATATGAGACTTCGTGTAAGACCATAGCTGGGCTA
1 TGTGTAAGACCATAGCTGAGATATGGCATCGATATAAGACTCCATGTAAGACCATAGCTGGGATA
92499216 TTGGCATCGACATGAGACTT
66 -TGGCATCGACATGAGACTT
* * *
92499236 TGTGTAAGACCATAGCT-AGGCTATTGGCATCGATATAAGA-TCCCATGTATGACCATATCTGGG
1 TGTGTAAGACCATAGCTGA-GATA-TGGCATCGATATAAGACT-CCATGTAAGACCATAGCTGGG
92499299 ATATGGCAT
63 ATATGGCAT
92499308 TGGTATGGTA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
84 1 0.02
85 26 0.43
86 34 0.56
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (84 bp):
TGTGTAAGACCATAGCTGAGATATGGCATCGATATAAGACTCCATGTAAGACCATAGCTGGGATA
TGGCATCGACATGAGACTT
Found at i:92506397 original size:25 final size:25
Alignment explanation
Indices: 92506369--92506420 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
92506359 GATGTTTTGG
*
92506369 TAAGAGTCG-ATAAATTTATTTTTCC
1 TAAGAGT-GAATAAATTCATTTTTCC
92506394 TAAGAGTGAATAAATTCATTTTTCC
1 TAAGAGTGAATAAATTCATTTTTCC
92506419 TA
1 TA
92506421 CTGATTTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 1 0.04
25 24 0.96
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (25 bp):
TAAGAGTGAATAAATTCATTTTTCC
Found at i:92509609 original size:24 final size:24
Alignment explanation
Indices: 92509577--92509639 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
92509567 AAAATCCAAT
* * *
92509577 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAAT-TA
*
92509601 GCACTATGTGTGTGAGTGTAATTA
1 GCACTATGTGTGCGAGTGTAATTA
92509625 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
92509640 ATACGGTTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.21, C:0.14, G:0.30, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATTA
Found at i:92511552 original size:43 final size:43
Alignment explanation
Indices: 92511485--92511655 Score: 188
Period size: 43 Copynumber: 4.0 Consensus size: 43
92511475 AGTCTGTACA
* * *
92511485 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
* * * * *
92511527 ATGCCATTGTCCTAGACAGGGTCTTATAT-TACATCATATAAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACATGTA-ATCACAT-ATCG
* *
92511570 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT-CG
*
92511613 ATGCCAATGTCCCAGATATGGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
92511656 GTAATCCTAA
Statistics
Matches: 104, Mismatches: 18, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
41 2 0.02
42 6 0.06
43 90 0.87
44 6 0.06
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.31
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:92513472 original size:46 final size:46
Alignment explanation
Indices: 92513405--92514316 Score: 1652
Period size: 46 Copynumber: 19.8 Consensus size: 46
92513395 TGTAACCCGC
* * * * * *
92513405 CCATAAGCGAACTCGGACTCAACACAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
92513451 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
92513501 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92513544 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92513590 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92513636 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92513682 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92513728 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92513774 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92513820 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92513866 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92513912 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92513958 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92514004 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92514050 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92514096 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92514142 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92514188 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92514234 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
92514280 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
92514317 TGCTCAACCA
Statistics
Matches: 845, Mismatches: 12, Indels: 18
0.97 0.01 0.02
Matches are distributed among these distances:
42 2 0.00
43 4 0.00
44 1 0.00
45 2 0.00
46 799 0.95
47 28 0.03
48 2 0.00
49 1 0.00
50 4 0.00
51 2 0.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:92518353 original size:42 final size:42
Alignment explanation
Indices: 92518306--92518393 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
92518296 GAACGAGGAT
*
92518306 TCATATTCCTTGACTTTCCAGGTTGCTATGAAAATGAACCGC
1 TCATATTCCTTGACTTTCCAGGTTGCTATGAAAATGAACCAC
*
92518348 TCATATTCCTTGACTTTCCAGGTTGCTGTGAAAATGAACCAC
1 TCATATTCCTTGACTTTCCAGGTTGCTATGAAAATGAACCAC
92518390 TCAT
1 TCAT
92518394 CGGTCTTTTC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (42 bp):
TCATATTCCTTGACTTTCCAGGTTGCTATGAAAATGAACCAC
Found at i:92521595 original size:46 final size:46
Alignment explanation
Indices: 92520766--92521572 Score: 1605
Period size: 46 Copynumber: 17.5 Consensus size: 46
92520756 TACATTTCAC
92520766 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
*
92520812 GAACTCGGACTCAACTCAACGAGTTCTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92520858 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92520904 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92520950 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92520996 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92521042 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92521088 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92521134 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92521180 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92521226 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92521272 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92521318 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92521364 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92521410 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92521456 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92521502 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
92521548 GAACTCGGACTCAACTCAACGAGTT
1 GAACTCGGACTCAACTCAACGAGTT
92521573 CGGATGCTCA
Statistics
Matches: 759, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 759 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTTTGACATTCGCATCCATAAGT
Found at i:92526733 original size:85 final size:85
Alignment explanation
Indices: 92526590--92526853 Score: 501
Period size: 85 Copynumber: 3.1 Consensus size: 85
92526580 GGCCGGCCAT
*
92526590 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACCAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
92526655 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
92526675 GAGCATGGGTGGACCAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGCGTAGTGCATTAT
1 GAGCATGGGTGGACCAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
92526740 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
92526760 GAGCATGGGTGGACCAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACCAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
92526825 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
92526845 GGGCATGGG
1 GAGCATGGG
92526854 CAATAAAATA
Statistics
Matches: 175, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 175 1.00
ACGTcount: A:0.37, C:0.09, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACCAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:92529132 original size:26 final size:26
Alignment explanation
Indices: 92529089--92529152 Score: 110
Period size: 26 Copynumber: 2.4 Consensus size: 26
92529079 CGAATGGCCA
*
92529089 ATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAT-AAGGTGAAAGTGTATATAT
92529116 ATGTGATAAGGTGAAAGTGTATATAT
1 ATGTGATAAGGTGAAAGTGTATATAT
92529142 ATGTGATAAGG
1 ATGTGATAAGG
92529153 CCTAATGGCC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
26 29 0.81
27 7 0.19
ACGTcount: A:0.38, C:0.00, G:0.28, T:0.34
Consensus pattern (26 bp):
ATGTGATAAGGTGAAAGTGTATATAT
Found at i:92529147 original size:75 final size:73
Alignment explanation
Indices: 92529053--92529192 Score: 244
Period size: 75 Copynumber: 1.9 Consensus size: 73
92529043 TTGAATGAAT
92529053 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATAT
92529118 GTGATAAG
66 GTGATAAG
* *
92529126 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
92529191 AT
64 AT
92529193 ATGCGATAAG
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
73 9 0.14
75 54 0.86
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (73 bp):
GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATAT
GTGATAAG
Found at i:92529264 original size:47 final size:49
Alignment explanation
Indices: 92529116--92530021 Score: 1468
Period size: 49 Copynumber: 18.8 Consensus size: 49
92529106 GTGTATATAT
*
92529116 ATGTGAT-AAGGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
92529164 ATGTGATGAATGTGAAAGTGTATATATATATGCGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCG
* *
92529215 ATGTGATGAATGTGAAAG-G-GTATATATGTGATAAGGCCTAATGGTCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
92529262 ATGTGATGAATGTGAAAGTG--TATATATGTGATACGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
92529309 ATGTGATGAATGTGAAAG-G-GTATATATGTGATAAGGCCTAATGGTCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
92529356 ATGTGATGAATGTGAAAGTG--TATATATGTGATACGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
92529403 ATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCG
*
92529454 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGTCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
92529501 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
92529548 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
92529597 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
92529646 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
92529695 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
92529744 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
92529793 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
92529842 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
92529891 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * * *
92529940 ATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
92529987 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
92530022 TCCCGAAGGG
Statistics
Matches: 813, Mismatches: 31, Indels: 29
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 308 0.38
48 10 0.01
49 402 0.49
50 1 0.00
51 91 0.11
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:92530277 original size:37 final size:37
Alignment explanation
Indices: 92530139--92530276 Score: 233
Period size: 37 Copynumber: 3.7 Consensus size: 37
92530129 CCGAGCTCTA
92530139 AAGACCCGATGACTACAG-GTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTAC-GTGTGGAGATTATGTCCGGGT
92530176 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
92530213 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
92530250 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
92530277 TCGTCTGAGC
Statistics
Matches: 97, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
36 1 0.01
37 96 0.99
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:92540292 original size:16 final size:16
Alignment explanation
Indices: 92540271--92540305 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
92540261 TTATTTTTAC
92540271 TTAGTTATTTTATAAA
1 TTAGTTATTTTATAAA
92540287 TTAGTTATTTTATAAA
1 TTAGTTATTTTATAAA
92540303 TTA
1 TTA
92540306 CTATTTAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (16 bp):
TTAGTTATTTTATAAA
Found at i:92542654 original size:46 final size:46
Alignment explanation
Indices: 92542602--92542776 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
92542592 TGTAACCCGC
* *
92542602 CCATAAGCGAACTCGGACTCAAATCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
* *
92542648 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* * *
92542698 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
*
92542741 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
92542777 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
Found at i:92542725 original size:93 final size:93
Alignment explanation
Indices: 92542609--92542780 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
92542599 CGCCCATAAG
* *
92542609 CGAACTCGGACTCAAATCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAAATCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
92542674 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
92542702 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAAATCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
92542767 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
92542781 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAAATCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:92550295 original size:93 final size:93
Alignment explanation
Indices: 92550183--92550354 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
92550173 CGCCCATAAG
* *
92550183 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
92550248 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
92550276 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
92550341 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
92550355 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:92550351 original size:46 final size:46
Alignment explanation
Indices: 92550176--92550351 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
92550166 TGTAACCCGC
* * *
92550176 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
92550222 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
92550272 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
92550315 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
92550352 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:92559048 original size:20 final size:21
Alignment explanation
Indices: 92559025--92559065 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
92559015 ATTTAAAAAC
*
92559025 ATAAAAAAG-TATTAAAACAA
1 ATAAAAAAGATACTAAAACAA
*
92559045 ATAAAAATGATACTAAAACAA
1 ATAAAAAAGATACTAAAACAA
92559066 TTCTTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.68, C:0.07, G:0.05, T:0.20
Consensus pattern (21 bp):
ATAAAAAAGATACTAAAACAA
Found at i:92562389 original size:27 final size:27
Alignment explanation
Indices: 92562359--92562411 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
92562349 ATAGCATCGT
* * *
92562359 GGATAGTCTGTCGAGACGATAAACACA
1 GGATAGCCCGTCGAGACAATAAACACA
*
92562386 GGATAGCCCGTCGAGATAATAAACAC
1 GGATAGCCCGTCGAGACAATAAACAC
92562412 GGGGAGTACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.17
Consensus pattern (27 bp):
GGATAGCCCGTCGAGACAATAAACACA
Found at i:92579041 original size:98 final size:98
Alignment explanation
Indices: 92578870--92579063 Score: 334
Period size: 98 Copynumber: 2.0 Consensus size: 98
92578860 CTCGGTTTTG
* * *
92578870 TGCTTTCAGCAGTGTCAGTCGAGCCAAATTTCACCCTTTGCGCGAATCTGTCGAAAATAGTCAAA
1 TGCTTTCAACAGTGTCAGCCGAGCCAAATTTCACCCTTTGCGCGAATATGTCGAAAATAGTCAAA
92578935 ATTAGTCAAAGTTAAGTATAAAATTAAATAAGT
66 ATTAGTCAAAGTTAAGTATAAAATTAAATAAGT
* *
92578968 TGCTTTCAACAGTGTCAGCCGAGCCAATTTTCACCCTTTGTGCGAATATGTCGAAAATAGTCAAA
1 TGCTTTCAACAGTGTCAGCCGAGCCAAATTTCACCCTTTGCGCGAATATGTCGAAAATAGTCAAA
*
92579033 ATTTGTCAAAGTTAAGTATAAAATTAAATAA
66 ATTAGTCAAAGTTAAGTATAAAATTAAATAA
92579064 ATTCACCATG
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.30
Consensus pattern (98 bp):
TGCTTTCAACAGTGTCAGCCGAGCCAAATTTCACCCTTTGCGCGAATATGTCGAAAATAGTCAAA
ATTAGTCAAAGTTAAGTATAAAATTAAATAAGT
Found at i:92581582 original size:49 final size:49
Alignment explanation
Indices: 92581478--92581582 Score: 138
Period size: 49 Copynumber: 2.1 Consensus size: 49
92581468 GTTGTGTGTT
* * *
92581478 AGTGTAAGGCCTGTCTGGGACATGGCATCGACATCGATAAATGAGAGAC
1 AGTGTAAGACCTGTCTGGGACATGACATCGACATCGATAAATGAAAGAC
* * * * *
92581527 AATGTAAGACCTGTCTGGGACATGACATCGGCTTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGACATCGACATCGATAAATGAAAGAC
92581576 AGTGTAA
1 AGTGTAA
92581583 CGCCTCGTAC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGACATCGACATCGATAAATGAAAGAC
Found at i:92582959 original size:50 final size:49
Alignment explanation
Indices: 92582834--92583022 Score: 234
Period size: 50 Copynumber: 3.8 Consensus size: 49
92582824 TAGCCAAAGC
* * * *
92582834 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
92582883 TATCTGGTATACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
92582933 CATCTGATACACGTAGTAGCCTGCACTTATTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * *
92582984 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
92583023 TACGACCTCA
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 41 0.34
50 44 0.37
51 34 0.29
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:92583030 original size:101 final size:99
Alignment explanation
Indices: 92582847--92583030 Score: 251
Period size: 101 Copynumber: 1.8 Consensus size: 99
92582837 CTGGTACGCA
* * * *
92582847 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTATACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
**
92582912 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACACGACCTAACCATCTGATACACG
* * * *
92582946 TAGTAGCCTGCACTTATTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACT
*
92583011 TAGTACTACACATACGACCT
64 TAGTACTACACACACGACCT
92583031 CACAATAGAT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 28 0.39
100 3 0.04
101 41 0.57
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACACGACCTAACCATCTGATACACG
Found at i:92593227 original size:22 final size:21
Alignment explanation
Indices: 92593188--92593229 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
92593178 CACTTAACAT
92593188 AGGGGCAAACACCCGTGTGAG
1 AGGGGCAAACACCCGTGTGAG
*
92593209 AGGGGCAACACGCCCGTGTGA
1 AGGGGCAA-ACACCCGTGTGA
92593230 CCATTTAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.26, C:0.26, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGGCAAACACCCGTGTGAG
Found at i:92596383 original size:49 final size:49
Alignment explanation
Indices: 92596323--92596440 Score: 148
Period size: 49 Copynumber: 2.4 Consensus size: 49
92596313 TGTGTGTTAG
* *
92596323 TGTAAGGCCTGTCTGGGACATGGCATCGACATCGATAAAT-AAGAGCCAA
1 TGTAAGACCTGTCTGGGACAAGGCATCGACATCGATAAATGAA-AGCCAA
* * * * *
92596372 TGTAAGACCTGTCTGGGACAAGGCATCGGCCTCGATATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACAAGGCATCGACATCGATAAATGAAAGCCAA
*
92596421 TGTAAGACCTGTCTAGGACA
1 TGTAAGACCTGTCTGGGACA
92596441 CGACATCAAC
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
49 58 0.97
50 2 0.03
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACAAGGCATCGACATCGATAAATGAAAGCCAA
Found at i:92606590 original size:8 final size:8
Alignment explanation
Indices: 92606577--92606603 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
92606567 CAAGCAAAAT
92606577 ATGCATGA
1 ATGCATGA
92606585 ATGCATGA
1 ATGCATGA
92606593 ATGCATGA
1 ATGCATGA
92606601 ATG
1 ATG
92606604 TAAGAATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.26
Consensus pattern (8 bp):
ATGCATGA
Found at i:92606610 original size:16 final size:16
Alignment explanation
Indices: 92606577--92606610 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
92606567 CAAGCAAAAT
*
92606577 ATGCATGAATGCATGA
1 ATGCATGAATGCAAGA
*
92606593 ATGCATGAATGTAAGA
1 ATGCATGAATGCAAGA
92606609 AT
1 AT
92606611 TTCCATATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26
Consensus pattern (16 bp):
ATGCATGAATGCAAGA
Found at i:92621188 original size:72 final size:72
Alignment explanation
Indices: 92621071--92621216 Score: 265
Period size: 72 Copynumber: 2.0 Consensus size: 72
92621061 AATCATATGA
*
92621071 ACTTACAAATTCCCATAATATCCATAATCATAGAAATCACATTTATGTATGATAATTCAATGCAC
1 ACTTACAAATTCCCATAATATCCATAATCATAGAAATCACATTTATGTATGAGAATTCAATGCAC
92621136 TTCATGT
66 TTCATGT
* *
92621143 ACTTACAATTTCCCATAATATCCATAATCATAGAAATCATATTTATGTATGAGAATTCAATGCAC
1 ACTTACAAATTCCCATAATATCCATAATCATAGAAATCACATTTATGTATGAGAATTCAATGCAC
92621208 TTCATGT
66 TTCATGT
92621215 AC
1 AC
92621217 CATAGACATA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (72 bp):
ACTTACAAATTCCCATAATATCCATAATCATAGAAATCACATTTATGTATGAGAATTCAATGCAC
TTCATGT
Found at i:92628019 original size:10 final size:10
Alignment explanation
Indices: 92628004--92628033 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
92627994 CTCTACCTGG
92628004 ATCATTTCCA
1 ATCATTTCCA
92628014 ATCATTTCCA
1 ATCATTTCCA
92628024 ATCATTTCCA
1 ATCATTTCCA
92628034 TTTCTCGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.40
Consensus pattern (10 bp):
ATCATTTCCA
Found at i:92634914 original size:27 final size:27
Alignment explanation
Indices: 92634873--92634927 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
92634863 TGTCATGTGA
* *
92634873 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
92634900 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
92634927 A
1 A
92634928 GTTGTACCTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.40, C:0.07, G:0.15, T:0.38
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:92635291 original size:49 final size:49
Alignment explanation
Indices: 92635163--92635296 Score: 196
Period size: 49 Copynumber: 2.7 Consensus size: 49
92635153 GGTCACGTGT
* * * *
92635163 GTAGTACTAAGTGCAGGGTACTATGTGTACAGGATAATTGGTCGCATTG
1 GTAGTACTAAGTGCAGGATACTATGTGTACCGGATAATTGGCCGCATGG
* *
92635212 GTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCGCATGG
1 GTAGTACTAAGTGCAGGATACTATGTGTACCGGATAATTGGCCGCATGG
* *
92635261 GTAGTACTAAGTGCAGGATACTATGCGTACCAGATA
1 GTAGTACTAAGTGCAGGATACTATGTGTACCGGATA
92635297 GCCTTGTCTA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 76 1.00
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (49 bp):
GTAGTACTAAGTGCAGGATACTATGTGTACCGGATAATTGGCCGCATGG
Found at i:92642695 original size:8 final size:8
Alignment explanation
Indices: 92642682--92642714 Score: 52
Period size: 7 Copynumber: 4.4 Consensus size: 8
92642672 ATGTAATTAG
92642682 TTAAAAAA
1 TTAAAAAA
92642690 TT-AAAAA
1 TTAAAAAA
92642697 TT-AAAAA
1 TTAAAAAA
92642704 TTAAAAAA
1 TTAAAAAA
92642712 TTA
1 TTA
92642715 GTCTTGACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 14 0.58
8 10 0.42
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (8 bp):
TTAAAAAA
Found at i:92645472 original size:39 final size:39
Alignment explanation
Indices: 92645308--92645490 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
92645298 TTGAATGCTG
* * * * * * *
92645308 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * * *
92645348 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
92645388 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
92645428 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
92645467 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
92645491 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:92645510 original size:79 final size:80
Alignment explanation
Indices: 92645344--92645525 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 80
92645334 GCTAAGTGAA
* * * *
92645344 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGGGTTAAG-TCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** ** *
92645408 CATTCGTGCGAGTTGT
65 CATTCGAACGAGGAGC
* * * * *
92645424 TAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
*
92645488 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
*
92645503 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
92645526 TACGTGATTT
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
78 14 0.17
79 50 0.60
80 19 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:92651972 original size:40 final size:40
Alignment explanation
Indices: 92651941--92652150 Score: 271
Period size: 40 Copynumber: 5.3 Consensus size: 40
92651931 GGACTAAGAT
* * *
92651941 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATATTAAA-TCCGGGTTAAGTC
* *
92651981 CCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
*
92652021 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
* *
92652061 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
* * * * * *
92652101 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
92652140 CCGAAGGCATT
1 CCGAAGGCATT
92652151 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.22
40 120 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
Found at i:92652104 original size:120 final size:120
Alignment explanation
Indices: 92651888--92652150 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
92651878 TTGAATGCTG
* *
92651888 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* * *
92651952 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATATTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
92652008 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
92652071 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
92652127 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
92652151 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 37 0.31
120 74 0.62
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:92652802 original size:100 final size:101
Alignment explanation
Indices: 92652623--92652823 Score: 386
Period size: 100 Copynumber: 2.0 Consensus size: 101
92652613 TGGTTGAATC
92652623 TTGATATGGCATGTATAGGACTACCCATTGTTGTTTTTCGAGTACTTTATGAAATGTATAAGTGT
1 TTGATATGGCATGTATAGGACTACCCATTGTTGTTTTTCGAGTACTTTATGAAATGTATAAGTGT
92652688 ACAGCCATGCGAAAATGGCTTGTAGAAGTGGAGTAT
66 ACAGCCATGCGAAAATGGCTTGTAGAAGTGGAGTAT
92652724 TTGATATGGCATGTATAGGACTACCCATTGTTG-TTTTCGAGTACTTTATGAAATGTATAAGTGT
1 TTGATATGGCATGTATAGGACTACCCATTGTTGTTTTTCGAGTACTTTATGAAATGTATAAGTGT
*
92652788 ACAGCCATGGGAAAATGGCTTGTAGAAGTGGAGTAT
66 ACAGCCATGCGAAAATGGCTTGTAGAAGTGGAGTAT
92652824 GGCATTAGAC
Statistics
Matches: 99, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
100 66 0.67
101 33 0.33
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.34
Consensus pattern (101 bp):
TTGATATGGCATGTATAGGACTACCCATTGTTGTTTTTCGAGTACTTTATGAAATGTATAAGTGT
ACAGCCATGCGAAAATGGCTTGTAGAAGTGGAGTAT
Found at i:92656437 original size:131 final size:134
Alignment explanation
Indices: 92656194--92656452 Score: 337
Period size: 131 Copynumber: 1.9 Consensus size: 134
92656184 CCTACTTTTT
* * * * *
92656194 ACTATAATATGTTGTTATCTACACTTTTGACTTCGGCTTGTTTACTTCTCTGTGCCTTACCAATT
1 ACTATAATATATTGTTATCAACACTTTTGAATTCGGCTTGTTTACGTCTCTGT-CCTTACCAATG
* ** **
92656259 AGCTTTCACTACTTTAACATATTACGATGAAACTTGTTTTATGTTAATTCGTGTGTTCATCAAAA
65 AGCTTTCACTACTTTAACATATTAAGATGAAACCAGTTTTATGTTAATTCGTGCATTCATCAAAA
92656324 TGTTC
130 TGTTC
* * *
92656329 ACTATAATATATTGTTATCAACACTTTTGAATTCGTCTTGTTTA-GT-TCTGT-CTTACTAGTGA
1 ACTATAATATATTGTTATCAACACTTTTGAATTCGGCTTGTTTACGTCTCTGTCCTTACCAATGA
* *
92656391 GCTTTTACTA-TTGTAACATATTAAGATGAAACCAGTTTTATTTTAATTCGTGCATTCATCAA
66 GCTTTCACTACTT-TAACATATTAAGATGAAACCAGTTTTATGTTAATTCGTGCATTCATCAA
92656453 TAAGAACCAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
130 2 0.02
131 60 0.56
133 5 0.05
134 1 0.01
135 40 0.37
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (134 bp):
ACTATAATATATTGTTATCAACACTTTTGAATTCGGCTTGTTTACGTCTCTGTCCTTACCAATGA
GCTTTCACTACTTTAACATATTAAGATGAAACCAGTTTTATGTTAATTCGTGCATTCATCAAAAT
GTTC
Found at i:92656633 original size:17 final size:17
Alignment explanation
Indices: 92656611--92656645 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
92656601 GTTCTTGTTA
92656611 TTTTGATGATGTAAATT
1 TTTTGATGATGTAAATT
92656628 TTTTGATGATGTAAATT
1 TTTTGATGATGTAAATT
92656645 T
1 T
92656646 CTCGAAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.54
Consensus pattern (17 bp):
TTTTGATGATGTAAATT
Found at i:92669252 original size:49 final size:49
Alignment explanation
Indices: 92669124--92669311 Score: 161
Period size: 49 Copynumber: 3.8 Consensus size: 49
92669114 CAAACATGGG
* * * *
92669124 ATAAGATGCCGACGCCATGTCCTAGACATGGTCTTACACTGGCTAGTACAT-T
1 ATAAG-TGCCGATGCCATGTCCCAGACA-GGTCTTACACTGACT--TTCATAT
* * * *
92669176 A-AAGT--CGATGCCATCTTCCAAACAGGTCTTACACTGACTTTTATAT
1 ATAAGTGCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATAT
* * *
92669222 ATCAAG-GCCGATGTCATGTCCCAGACAGGTCTTACACTGGCTTTCATCT
1 AT-AAGTGCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATAT
* * * *
92669271 ATTAGTGTCGATGCCATGTCCTAGATAGGTCTTACACTGAC
1 ATAAGTGCCGATGCCATGTCCCAGACAGGTCTTACACTGAC
92669312 ACACAACAAG
Statistics
Matches: 109, Mismatches: 21, Indels: 15
0.75 0.14 0.10
Matches are distributed among these distances:
45 3 0.03
46 2 0.02
47 14 0.13
48 19 0.17
49 66 0.61
50 1 0.01
51 3 0.03
52 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (49 bp):
ATAAGTGCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATAT
Found at i:92683160 original size:80 final size:79
Alignment explanation
Indices: 92683076--92683247 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 79
92683066 GGACTAAGAT
*
92683076 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
92683140 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * * *
92683156 CCGAAGGCATTCGTGCGAGTTATTAAATCTGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
92683221 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
92683235 CCGAAGGCATTTG
1 CCGAAGGCATTTG
92683248 AACGAGGAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 38 0.49
80 37 0.47
81 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:92683233 original size:39 final size:39
Alignment explanation
Indices: 92683076--92683245 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 39
92683066 GGACTAAGAT
* * *
92683076 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCCGGGTTATGTC
* * *
92683116 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
* *
92683156 CCGAAGGCATTCGTGCGAGTTATTAAATCTGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
92683196 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
92683235 CCGAAGGCATT
1 CCGAAGGCATT
92683246 TGAACGAGGA
Statistics
Matches: 115, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 37 0.32
40 74 0.64
41 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:92700355 original size:18 final size:18
Alignment explanation
Indices: 92700332--92700367 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
92700322 TAACATATAA
92700332 AAGTATATAACACATACC
1 AAGTATATAACACATACC
*
92700350 AAGTATATAATACATACC
1 AAGTATATAACACATACC
92700368 TGACCAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.50, C:0.19, G:0.06, T:0.25
Consensus pattern (18 bp):
AAGTATATAACACATACC
Found at i:92700547 original size:40 final size:39
Alignment explanation
Indices: 92700510--92700689 Score: 229
Period size: 39 Copynumber: 4.6 Consensus size: 39
92700500 CGGGACTTTA
*
92700510 AGCCCGGATATAATACCAGCATAAA-GCCTGT-GAGACTTT
1 AGCCCGGATATAATACCAGCACAAATGCCT-TCGAGAC-TT
* * *
92700549 AGCCTGGATATAATACCAGCATAAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCACAAATGCCTTCGAGACTT
* * *
92700588 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGACAT
1 AGCCCGGATATAATACCAGCACAAATGCCTTCGAGACTT
*
92700627 AGCCCGGATATAACACCAGCACAAATGCCTTCGAGACTT
1 AGCCCGGATATAATACCAGCACAAATGCCTTCGAGACTT
* *
92700666 AAGTCCGGATATAATTCCAGCACA
1 -AGCCCGGATATAATACCAGCACA
92700690 TAGCCTGCAG
Statistics
Matches: 127, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 99 0.78
40 28 0.22
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (39 bp):
AGCCCGGATATAATACCAGCACAAATGCCTTCGAGACTT
Found at i:92700719 original size:39 final size:39
Alignment explanation
Indices: 92700630--92700795 Score: 226
Period size: 39 Copynumber: 4.2 Consensus size: 39
92700620 GGGACATAGC
** * * *
92700630 CCGGATATAACACCAGCACAAATGCCTTCGAGA-CTTAAGT
1 CCGGATATAATTCCAGCACATA-GCCTGCG-GACCCTAAGT
*
92700670 CCGGATATAATTCCAGCACATAGCCTGCAGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
92700709 CCAGATATAATTCTAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
92700748 TCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
92700787 CCGGATATA
1 CCGGATATA
92700796 CATCAAATAT
Statistics
Matches: 112, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 2 0.02
39 91 0.81
40 19 0.17
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:92704961 original size:40 final size:40
Alignment explanation
Indices: 92704896--92705117 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
92704886 TATTCGAATG
* *
92704896 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* *
92704936 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
92704976 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
92705016 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
** * * *
92705056 ATATCCGGGCTCTGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
92705096 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
92705118 TACTTGGGTT
Statistics
Matches: 162, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 12 0.07
40 148 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:92711172 original size:39 final size:40
Alignment explanation
Indices: 92711110--92711311 Score: 259
Period size: 39 Copynumber: 5.1 Consensus size: 40
92711100 CCAGAAAGTA
*
92711110 TGCGGGACTTTAAGCCCGGATATAATACCAGCATAAA-GCC
1 TGCGGGACTTT-AGCCCGGATATAATACCAGCACAAATGCC
*
92711150 TGCGGGACTTTAGCCCGGATATAATACCAGCATAAATGCC
1 TGCGGGACTTTAGCCCGGATATAATACCAGCACAAATGCC
** *
92711190 TTTGGGAC-TTAGCCCGGATATAACACCAGCACAAATGCC
1 TGCGGGACTTTAGCCCGGATATAATACCAGCACAAATGCC
* *
92711229 TTCGGGAC-TTAGCCCGGATATAACACCAGCACAAATGCC
1 TGCGGGACTTTAGCCCGGATATAATACCAGCACAAATGCC
* * * * *
92711268 TACGGGACTTAAGTCCGGATATAATTCCAGCACATA-GCC
1 TGCGGGACTTTAGCCCGGATATAATACCAGCACAAATGCC
92711307 TGCGG
1 TGCGG
92711312 ACCCTAAGTC
Statistics
Matches: 148, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 106 0.72
40 42 0.28
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (40 bp):
TGCGGGACTTTAGCCCGGATATAATACCAGCACAAATGCC
Found at i:92711331 original size:39 final size:39
Alignment explanation
Indices: 92711242--92711368 Score: 166
Period size: 39 Copynumber: 3.2 Consensus size: 39
92711232 GGGACTTAGC
** * * *
92711242 CCGGATATAACACCAGCACAAATGCCTACGGGA-CTTAAGT
1 CCGGATATAATTCCAGCACATA-GCCTGC-GGACCCTAAGT
92711282 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
92711321 CCGGATATAATTCTAGCACATAGGCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
92711360 CCGGATATA
1 CCGGATATA
92711369 CATCAAATAT
Statistics
Matches: 79, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
38 3 0.04
39 57 0.72
40 19 0.24
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.20
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:92711339 original size:79 final size:79
Alignment explanation
Indices: 92711112--92711340 Score: 275
Period size: 78 Copynumber: 2.9 Consensus size: 79
92711102 AGAAAGTATG
* *
92711112 CGGGACTTTAAGCCCGGATATAATACCAGCATAAAGCCTGCGGGACTTTAGCCCGGATATAATAC
1 CGGGAC-TTAAGCCCGGATATAATACCAGCACAAAGCCTGCGGGACCTTAGCCCGGATATAATAC
* *
92711177 CAGCATAAATGCCTT
65 CAGCACAAATGCCTA
* * * *
92711192 TGGGACTT-AGCCCGGATATAACACCAGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAACAC
1 CGGGACTTAAGCCCGGATATAATACCAGCACAAA-GCCTGCGGGACCTTAGCCCGGATATAATAC
92711255 CAGCACAAATGCCTA
65 CAGCACAAATGCCTA
* * * * * *
92711270 CGGGACTTAAGTCCGGATATAATTCCAGCACATAGCCTGC-GGACCCTAAGTCCGGATATAATTC
1 CGGGACTTAAGCCCGGATATAATACCAGCACAAAGCCTGCGGGA-CCTTAGCCCGGATATAATAC
*
92711334 TAGCACA
65 CAGCACA
92711341 TAGGCTGCGG
Statistics
Matches: 126, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
77 3 0.02
78 65 0.52
79 53 0.42
80 5 0.04
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (79 bp):
CGGGACTTAAGCCCGGATATAATACCAGCACAAAGCCTGCGGGACCTTAGCCCGGATATAATACC
AGCACAAATGCCTA
Found at i:92716928 original size:19 final size:20
Alignment explanation
Indices: 92716904--92716941 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
92716894 GGTACCACCA
92716904 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
92716923 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
92716942 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:92717280 original size:93 final size:93
Alignment explanation
Indices: 92717170--92717340 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
92717160 GCCCCTAAGT
* *
92717170 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCATAAATGAACCCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACCCAGACTCAACTCAA
92717235 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
92717263 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACCCAGACTCAACTCAA
92717328 CGAGTTCGGATGC
66 CGAGTTCGGATGC
92717341 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACCCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Done.