Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 268 of 290
Found at i:92717337 original size:46 final size:46
Alignment explanation
Indices: 92717165--92717337 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
92717155 AACCCGCCCC
* *
92717165 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
* * *
92717211 TAAATGAACCCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACATCCA
* * *
92717259 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
*
92717304 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
92717338 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 58 0.55
47 28 0.27
48 2 0.02
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
Found at i:92717792 original size:30 final size:30
Alignment explanation
Indices: 92717758--92717817 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
92717748 ATTTAATATG
92717758 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
* * *
92717788 AACTTTTACATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
92717818 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:92724507 original size:40 final size:40
Alignment explanation
Indices: 92724452--92724546 Score: 145
Period size: 40 Copynumber: 2.4 Consensus size: 40
92724442 TATGTGCATA
* *
92724452 GCATTCGTGTGGGTTATTATAACCGAGTTAAGTCCTAAAG
1 GCATTCGTGCGGGTTATTATAACCGAGTTAAGTCCCAAAG
* *
92724492 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGAGTTAAGTCCCAAAG
*
92724532 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
92724547 GTTACATCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGAGTTAAGTCCCAAAG
Found at i:92726788 original size:45 final size:45
Alignment explanation
Indices: 92726724--92726815 Score: 175
Period size: 45 Copynumber: 2.0 Consensus size: 45
92726714 ACCACTTCGG
92726724 TAAGGGGGAGGGGTTGTAGGACCTCTAACTCGACTTTCTTATACA
1 TAAGGGGGAGGGGTTGTAGGACCTCTAACTCGACTTTCTTATACA
*
92726769 TAAGGGGGAGGGGTTGTAGGACCTCTGACTCGACTTTCTTATACA
1 TAAGGGGGAGGGGTTGTAGGACCTCTAACTCGACTTTCTTATACA
92726814 TA
1 TA
92726816 CATATATGAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (45 bp):
TAAGGGGGAGGGGTTGTAGGACCTCTAACTCGACTTTCTTATACA
Found at i:92729024 original size:93 final size:93
Alignment explanation
Indices: 92728895--92729066 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
92728885 GCCCATAAGT
* * * ** *
92728895 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACACTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
92728960 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CAAGCTCGGATGCCTAGTTACATCTCTC
* *
92728988 GAACTCGGACTCAACTCAACGAGTTCAGACACTCGCATCCATAAGTGAACTTAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACACTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
92729053 CAAGTTCGGATGCC
66 CAAGCTCGGATGCC
92729067 CAAATATCCC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACACTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCTC
Found at i:92730201 original size:18 final size:18
Alignment explanation
Indices: 92730178--92730218 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
92730168 AAATTATTCG
92730178 ATTTAGTCCCTAATTTCA
1 ATTTAGTCCCTAATTTCA
92730196 ATTTAGTCCCTAATTTCA
1 ATTTAGTCCCTAATTTCA
92730214 ATTTA
1 ATTTA
92730219 AGCACTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.05, T:0.46
Consensus pattern (18 bp):
ATTTAGTCCCTAATTTCA
Found at i:92733203 original size:27 final size:27
Alignment explanation
Indices: 92733164--92733268 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
92733154 GGAAGCGTCA
*
92733164 TGGTGGCTATGCCACAATTATCTGATT
1 TGGTGGCTCTGCCACAATTATCTGATT
92733191 TGGTGGCTCTGCCACATATT-TCTG-TT
1 TGGTGGCTCTGCCACA-ATTATCTGATT
* *
92733217 ATGGTGGCTCTGCCACGATTATCTGTATC
1 -TGGTGGCTCTGCCACAATTATCTG-ATT
* *
92733246 TGGTGACTCTGTCAC-ATTATCTG
1 TGGTGGCTCTGCCACAATTATCTG
92733269 TTCTGGCAGC
Statistics
Matches: 68, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
26 5 0.07
27 46 0.68
28 16 0.24
29 1 0.01
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATTATCTGATT
Found at i:92733269 original size:54 final size:54
Alignment explanation
Indices: 92733163--92733270 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
92733153 AGGAAGCGTC
* * *
92733163 ATGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATTTCTGTT
1 ATGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
92733217 ATGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 ATGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
92733271 CTGGCAGCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 30 0.64
55 17 0.36
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.39
Consensus pattern (54 bp):
ATGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:92738016 original size:43 final size:43
Alignment explanation
Indices: 92737958--92738040 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
92737948 GAGATATGTG
** *
92737958 GCATCCAAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGCAA
1 GCATCCAAGCTCGTTGAGAGGTCCAAGTTCATGATGGATGCAA
* *
92738001 GCATCCGAGCTCGTTGAGTGGTCCAAGTTCATGATGGATG
1 GCATCCAAGCTCGTTGAGAGGTCCAAGTTCATGATGGATG
92738041 TGATTCATGT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (43 bp):
GCATCCAAGCTCGTTGAGAGGTCCAAGTTCATGATGGATGCAA
Found at i:92741446 original size:49 final size:49
Alignment explanation
Indices: 92741393--92741624 Score: 284
Period size: 49 Copynumber: 4.7 Consensus size: 49
92741383 CTAGTACGCA
* *
92741393 TAGTAGCCTGCACTTAGTACTATACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
* * ** *
92741442 TAGTAGTCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCTGGTACACG
* * * * * *
92741492 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGAACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCTGGTACACG
* * * *
92741543 TAATAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTAAACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
92741592 TAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
92741625 TCACAATAGA
Statistics
Matches: 153, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 69 0.45
50 48 0.31
51 36 0.24
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
Found at i:92747669 original size:51 final size:50
Alignment explanation
Indices: 92747503--92747732 Score: 238
Period size: 49 Copynumber: 4.6 Consensus size: 50
92747493 CTAGTACGCA
* * *
92747503 TAGTAGCTTGCACTTAGTACTACACATGCGA-CCAATTATCCG-GTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCTAATTAT-CGAGTACACG
* * * * *
92747552 TATTAGGCTGCACTTAGTACTACACACGTGACCTAACCATAT-GA-TACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCTAA--TTATCGAGTACACG
* * * *
92747602 TAGTAGCCTACACTTAGTACTACACATGTGATCGAAGTTATCGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCTAA-TTATCGAGTACACG
* *
92747653 TAGTAGCCTGCACTTAGTACTACACATGAGAT-TAATTATCCG-GAACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGATCTAATTAT-CGAGTACACG
*
92747702 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA
92747733 CCTCGCAATA
Statistics
Matches: 149, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
49 66 0.44
50 46 0.31
51 34 0.23
52 3 0.02
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGATCTAATTATCGAGTACACG
Found at i:92749936 original size:23 final size:25
Alignment explanation
Indices: 92749904--92749961 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 25
92749894 TGGATAACTA
* * *
92749904 TATATTAGGAAATTCAAGCA-AGCC
1 TATATCAGGAAACTCAAGAAGAGCC
*
92749928 -ATATCAGGAAGCTCAAGAAGAGCC
1 TATATCAGGAAACTCAAGAAGAGCC
92749952 TATATCAGGA
1 TATATCAGGA
92749962 CGCTCATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 15 0.54
24 4 0.14
25 9 0.32
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (25 bp):
TATATCAGGAAACTCAAGAAGAGCC
Found at i:92749960 original size:25 final size:24
Alignment explanation
Indices: 92749924--92749976 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
92749914 AATTCAAGCA
92749924 AGCCATATCAGGAAGCTCA-AGAAG
1 AGCCATATCAGGAAGCTCATA-AAG
*
92749948 AGCCTATATCAGGACGCTCATAAAG
1 AGCC-ATATCAGGAAGCTCATAAAG
92749973 AGCC
1 AGCC
92749977 GTGTTTGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 4 0.15
25 21 0.81
26 1 0.04
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.15
Consensus pattern (24 bp):
AGCCATATCAGGAAGCTCATAAAG
Found at i:92755374 original size:50 final size:50
Alignment explanation
Indices: 92755293--92755399 Score: 144
Period size: 50 Copynumber: 2.1 Consensus size: 50
92755283 CCAAATGACA
* * *
92755293 TCTTTCTTTTTTGGAGATAGAGGTAACCCTGATAAAAAGTCCATAGTAAC
1 TCTTTCCTTTTTAGAGATAGAGGTAACCCTGACAAAAAGTCCATAGTAAC
** *
92755343 TCTTTCCTTTTTAGAGATATG-GGTAGTCCTGACACAAAGTCCATAGTAAC
1 TCTTTCCTTTTTAGAGATA-GAGGTAACCCTGACAAAAAGTCCATAGTAAC
92755393 TCTTTCC
1 TCTTTCC
92755400 CATTTCCATT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
50 49 0.98
51 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.36
Consensus pattern (50 bp):
TCTTTCCTTTTTAGAGATAGAGGTAACCCTGACAAAAAGTCCATAGTAAC
Found at i:92761315 original size:25 final size:25
Alignment explanation
Indices: 92761287--92761336 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
92761277 CTCTCAACCA
92761287 CTCAATTCAAAGTCCA-TTCAAACAC
1 CTCAATTCAAA-TCCACTTCAAACAC
*
92761312 CTCAATTTAAATCCACTTCAAACAC
1 CTCAATTCAAATCCACTTCAAACAC
92761337 TTCCACAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.40, C:0.32, G:0.02, T:0.26
Consensus pattern (25 bp):
CTCAATTCAAATCCACTTCAAACAC
Found at i:92767967 original size:40 final size:40
Alignment explanation
Indices: 92767878--92768141 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
92767868 TTGAATGATG
* *
92767878 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
92767917 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
92767957 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
92767996 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
92768036 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
92768076 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
92768117 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
92768142 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:92768159 original size:120 final size:118
Alignment explanation
Indices: 92767878--92768174 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
92767868 TTGAATGATG
* *
92767878 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
92767938 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
92767996 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
92768061 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
92768117 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
92768175 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:92770018 original size:43 final size:43
Alignment explanation
Indices: 92769970--92770803 Score: 1616
Period size: 43 Copynumber: 19.4 Consensus size: 43
92769960 TTGGTTTTCA
*
92769970 GCACTAAGTGTGAGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770013 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
* * *
92770056 GCACTAAGTGTGCGGGC-TTGAAATGCTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAAT-AAGTGTTCACGGTTGTGAGATTG
92770099 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770142 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770185 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770228 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770271 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770314 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770357 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770400 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770443 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770486 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770529 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770572 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770615 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770658 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770701 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770744 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
92770787 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
92770804 TTGAAATGCA
Statistics
Matches: 782, Mismatches: 7, Indels: 4
0.99 0.01 0.01
Matches are distributed among these distances:
42 1 0.00
43 780 1.00
44 1 0.00
ACGTcount: A:0.23, C:0.14, G:0.35, T:0.28
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:92770820 original size:29 final size:29
Alignment explanation
Indices: 92770785--92770858 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
92770775 GTTGTGAGAT
* *
92770785 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
92770814 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
92770843 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
92770859 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:92771294 original size:40 final size:40
Alignment explanation
Indices: 92771171--92771366 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
92771161 TCGAATGATG
** *
92771171 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
92771211 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
92771251 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
92771291 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
92771331 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
92771367 CGTGTATTCG
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 110 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:92771307 original size:80 final size:81
Alignment explanation
Indices: 92771171--92771367 Score: 222
Period size: 80 Copynumber: 2.5 Consensus size: 81
92771161 TCGAATGATG
**
92771171 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
92771233 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** * *
92771251 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
* *
92771315 TCGTGCTAGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
92771331 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
92771368 GTGTATTCGG
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 73 0.74
81 20 0.20
82 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:92772610 original size:200 final size:200
Alignment explanation
Indices: 92772267--92772666 Score: 782
Period size: 200 Copynumber: 2.0 Consensus size: 200
92772257 ACTTATGAAA
92772267 TCAAGAAAATGAGATATATGTGCATACTTGTAGAAATGTTTATGTATTTGTTTTAAGATAAGAAA
1 TCAAGAAAATGAGATATATGTGCATACTTGTAGAAATGTTTATGTATTTGTTTTAAGATAAGAAA
92772332 ATGATTTTACAGATCGATGCGAAATCAATAATGAATTACAATTGCCATCGATGAGCTAATGTTTA
66 ATGATTTTACAGATCGATGCGAAATCAATAATGAATTACAATTGCCATCGATGAGCTAATGTTTA
92772397 TATGAATATAATTCAATAAGAGGACGTTATCCTAAACTATGCATCGGTAGAAATTTTCGGGGACG
131 TATGAATATAATTCAATAAGAGGACGTTATCCTAAACTATGCATCGGTAGAAATTTTCGGGGACG
92772462 AAAAT
196 AAAAT
*
92772467 TCAAGAAAATGAGATATATGTGCATACTTGTAGAAATTTTTATGTATTTGTTTTAAGATAAGAAA
1 TCAAGAAAATGAGATATATGTGCATACTTGTAGAAATGTTTATGTATTTGTTTTAAGATAAGAAA
*
92772532 ATGATTTTACAGATCGATTCGAAATCAATAATGAATTACAATTGCCATCGATGAGCTAATGTTTA
66 ATGATTTTACAGATCGATGCGAAATCAATAATGAATTACAATTGCCATCGATGAGCTAATGTTTA
92772597 TATGAATATAATTCAATAAGAGGACGTTATCCTAAACTATGCATCGGTAGAAATTTTCGGGGACG
131 TATGAATATAATTCAATAAGAGGACGTTATCCTAAACTATGCATCGGTAGAAATTTTCGGGGACG
92772662 AAAAT
196 AAAAT
92772667 CCCTAAAGGG
Statistics
Matches: 198, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 198 1.00
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33
Consensus pattern (200 bp):
TCAAGAAAATGAGATATATGTGCATACTTGTAGAAATGTTTATGTATTTGTTTTAAGATAAGAAA
ATGATTTTACAGATCGATGCGAAATCAATAATGAATTACAATTGCCATCGATGAGCTAATGTTTA
TATGAATATAATTCAATAAGAGGACGTTATCCTAAACTATGCATCGGTAGAAATTTTCGGGGACG
AAAAT
Found at i:92780214 original size:40 final size:40
Alignment explanation
Indices: 92780140--92780339 Score: 258
Period size: 40 Copynumber: 5.0 Consensus size: 40
92780130 GATAACTGGA
* * * *
92780140 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCAAAGGCATTTGTGCGAGTTGCTATATCCGGC
* * * * * *
92780180 CTATGTCCCAAAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCAAAGGCATTTGTGCGAGTTG-CTATATCCGGC
* *
92780220 CTAAGACCCGAAGGCATTTGTGCGAGTTACTATATCCGGC
1 CTAAGACCCAAAGGCATTTGTGCGAGTTGCTATATCCGGC
*
92780260 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGC
1 CTAAGACCCAAAGGCATTTGTGCGAGTTGCTATATCCGGC
*
92780300 CTAAGACCCAAAGGCATTTGTGCGAGTTGTTATATCCGGC
1 CTAAGACCCAAAGGCATTTGTGCGAGTTGCTATATCCGGC
92780340 TAAATCCCGA
Statistics
Matches: 139, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
CTAAGACCCAAAGGCATTTGTGCGAGTTGCTATATCCGGC
Found at i:92780586 original size:31 final size:31
Alignment explanation
Indices: 92780551--92780612 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
92780541 TTGAAGCGTG
92780551 AAGTAAGTATGATTATGAGAATGTGCATATA
1 AAGTAAGTATGATTATGAGAATGTGCATATA
92780582 AAGTAAGTATGATTATGAGAATGTGCATATA
1 AAGTAAGTATGATTATGAGAATGTGCATATA
92780613 TGATGTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (31 bp):
AAGTAAGTATGATTATGAGAATGTGCATATA
Found at i:92780650 original size:22 final size:22
Alignment explanation
Indices: 92780610--92780651 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
92780600 GAATGTGCAT
*
92780610 ATATGATGTTATTCATTTAGCC
1 ATATGATGTTATACATTTAGCC
92780632 ATATGAATGTTATAC-TTTAG
1 ATATG-ATGTTATACATTTAG
92780652 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (22 bp):
ATATGATGTTATACATTTAGCC
Found at i:92783191 original size:27 final size:27
Alignment explanation
Indices: 92783161--92783339 Score: 207
Period size: 27 Copynumber: 6.6 Consensus size: 27
92783151 ATATTGAGTC
* * * *
92783161 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
92783188 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
92783215 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
92783243 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
92783270 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
92783297 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
92783324 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
92783340 TACAATTTAA
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
27 107 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:92783300 original size:82 final size:81
Alignment explanation
Indices: 92783182--92783337 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
92783172 TGCTATATAA
* *
92783182 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
92783247 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
92783264 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
92783328 CACTTAGTGC
65 CACTTAGTGC
92783338 TATACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:92786946 original size:47 final size:48
Alignment explanation
Indices: 92786875--92787092 Score: 202
Period size: 47 Copynumber: 4.6 Consensus size: 48
92786865 TGGGTAAAGT
* *
92786875 GCCGATGCCATGTCCCAGAAATGGTCTTACACTGGATCAT-ATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGATCATCATCTCAA
* *
92786922 GTCGATGCCATGTCCCAGACATGGTCTTACACTA-A-CTATCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGATC-ATCATCTC-AA
* * * * *
92786970 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTA-CGTCTGGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGATCATCATCT-CAA
* * * * *
92787016 GCCGATG-TATGTTCCACACAT-GTCTTACACTAGCTC-TCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGATCATCATCTCAA
*
92787061 TGTCGATGCCATGTCCCAGACATGGTCTTACA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACA
92787093 TTGATTCTCA
Statistics
Matches: 140, Mismatches: 21, Indels: 19
0.78 0.12 0.11
Matches are distributed among these distances:
45 2 0.01
46 61 0.44
47 62 0.44
48 15 0.11
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGATCATCATCTCAA
Found at i:92789993 original size:82 final size:82
Alignment explanation
Indices: 92789856--92790018 Score: 272
Period size: 82 Copynumber: 2.0 Consensus size: 82
92789846 ATAATATATG
* *
92789856 ATGTGGCCATAATATGTCTTAAACTCAAATGGTAAGTTCATAAGTGTTTGGACTTGGAAATTTAA
1 ATGTGGCCATAATATGTCTTAAACTCAAATGGTAAGTTCATAAGTGTTCGGACTTGGAAAGTTAA
*
92789921 GAGTAAAATGTAATAAA
66 GAGCAAAATGTAATAAA
* *
92789938 ATGTGGCCATGATATGTCTTAAACTCAAATGGTAAGTTCATATGTGTTCGGACTTGGAAAGTTAA
1 ATGTGGCCATAATATGTCTTAAACTCAAATGGTAAGTTCATAAGTGTTCGGACTTGGAAAGTTAA
*
92790003 GAGCAAATTGTAATAA
66 GAGCAAAATGTAATAA
92790019 TTTGCTTTGG
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 75 1.00
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.33
Consensus pattern (82 bp):
ATGTGGCCATAATATGTCTTAAACTCAAATGGTAAGTTCATAAGTGTTCGGACTTGGAAAGTTAA
GAGCAAAATGTAATAAA
Found at i:92790338 original size:76 final size:76
Alignment explanation
Indices: 92790254--92790406 Score: 279
Period size: 76 Copynumber: 2.0 Consensus size: 76
92790244 AATTTGTACA
* *
92790254 AAAATGGTTATAAGATAAAATTTATATTCTTAGACTCCTTAATGAGTCTAGTTTCAAATTAAATC
1 AAAATGGTTATAAGATAAAATTTATATGCTTAGACTCCTTAATGAGTCTAGTTTCAAATGAAATC
*
92790319 AAATAGAACAC
66 AAATACAACAC
92790330 AAAATGGTTATAAGATAAAATTTATATGCTTAGACTCCTTAATGAGTCTAGTTTCAAATGAAATC
1 AAAATGGTTATAAGATAAAATTTATATGCTTAGACTCCTTAATGAGTCTAGTTTCAAATGAAATC
92790395 AAATACAACAC
66 AAATACAACAC
92790406 A
1 A
92790407 TTTTGAATTC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (76 bp):
AAAATGGTTATAAGATAAAATTTATATGCTTAGACTCCTTAATGAGTCTAGTTTCAAATGAAATC
AAATACAACAC
Found at i:92791047 original size:25 final size:25
Alignment explanation
Indices: 92791019--92791097 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
92791009 CGAATGGCCA
92791019 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
92791044 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
*
92791066 ATGTGATGAATATGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
92791091 ATGTGAT
1 ATGTGAT
92791098 AAAGCCGAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 8 0.20
23 8 0.20
24 9 0.22
25 15 0.38
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:92791062 original size:47 final size:47
Alignment explanation
Indices: 92790993--92791118 Score: 216
Period size: 47 Copynumber: 2.7 Consensus size: 47
92790983 TTTTATGTGT
* *
92790993 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
92791040 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
* *
92791087 ATATATGTGATAAAGCCGAATGGTCAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
92791119 AATATATATA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.25
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
Found at i:92791072 original size:22 final size:22
Alignment explanation
Indices: 92791001--92791072 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
92790991 GTATATATGA
92791001 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
92791023 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
92791048 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
92791070 GAT
1 GAT
92791073 GAATATGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:92791197 original size:48 final size:48
Alignment explanation
Indices: 92791088--92791224 Score: 204
Period size: 48 Copynumber: 2.8 Consensus size: 48
92791078 TGAACATGCA
* * *
92791088 TATATGTGATAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AGTGTG-AA-ATATGTATGAGATATG
92791138 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
*
92791186 TATATGTGGTAAAGCCGAATGGCTCGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
92791225 GGCGAGGTGC
Statistics
Matches: 82, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
48 53 0.65
49 2 0.02
50 26 0.32
51 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
Found at i:92791421 original size:37 final size:37
Alignment explanation
Indices: 92791371--92791442 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
92791361 GGAAATATAT
*
92791371 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
92791408 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
92791443 CGTCTAAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:92793612 original size:90 final size:90
Alignment explanation
Indices: 92793459--92793638 Score: 351
Period size: 90 Copynumber: 2.0 Consensus size: 90
92793449 CTAACCTAAC
92793459 AAATTTTGAAAATTTGACTACATATGTCTCCTATGGCCGGCCACTCTATTTCTAGGGGTCTAATT
1 AAATTTTGAAAATTTGACTACATATGTCTCCTATGGCCGGCCACTCTATTTCTAGGGGTCTAATT
*
92793524 GCCCTTTAAAATCCCCAATTTTGTT
66 GCCCTGTAAAATCCCCAATTTTGTT
92793549 AAATTTTGAAAATTTGACTACATATGTCTCCTATGGCCGGCCACTCTATTTCTAGGGGTCTAATT
1 AAATTTTGAAAATTTGACTACATATGTCTCCTATGGCCGGCCACTCTATTTCTAGGGGTCTAATT
92793614 GCCCTGTAAAATCCCCAATTTTGTT
66 GCCCTGTAAAATCCCCAATTTTGTT
92793639 TCTCTAATAA
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (90 bp):
AAATTTTGAAAATTTGACTACATATGTCTCCTATGGCCGGCCACTCTATTTCTAGGGGTCTAATT
GCCCTGTAAAATCCCCAATTTTGTT
Found at i:92797416 original size:40 final size:40
Alignment explanation
Indices: 92797334--92797554 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 40
92797324 AACCCAAGTA
* * *
92797334 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCGCAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAACG
* * *
92797373 CCTTCGGGTCTTAGCCTGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAACG
*
92797413 CCTTCGGGACTTAGCCCGGATATAG-CAACTTGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAACG
* * *
92797453 CCTTCGGAACTTAGCTCAGG-TATAGTCAATAGCAC-AACTG
1 CCTTCGGGACTTAGC-CCGGATATAGTCACTAGCACAAAC-G
* *
92797493 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAACG
92797532 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
92797555 CATCCGAATA
Statistics
Matches: 156, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
39 43 0.28
40 108 0.69
41 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAACG
Found at i:92806303 original size:47 final size:47
Alignment explanation
Indices: 92806234--92806440 Score: 219
Period size: 47 Copynumber: 4.4 Consensus size: 47
92806224 GTAAGGTGCA
*
92806234 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAGTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCAAGCC
* * *
92806281 GATGCCATGTCCCAGAAATGGTCTTACACTGACT-ATCATCTCGTAGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTC-AAGCC
* * * *
92806329 AATG-CATGTCCCAGACATGTCTTACACTGGCTTA-CGTCTCAAGGCT
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAA-GCC
* * *
92806375 GATG-CATGTCCTAGACATGTCTTACACTAGCTC-TCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAA-GCC
*
92806421 GATGCCATGTCCTAGACATG
1 GATGCCATGTCCCAGACATG
92806441 CTATTATAAA
Statistics
Matches: 138, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
45 1 0.01
46 65 0.47
47 66 0.48
48 6 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAAGCC
Found at i:92806430 original size:93 final size:94
Alignment explanation
Indices: 92806234--92806440 Score: 244
Period size: 93 Copynumber: 2.2 Consensus size: 94
92806224 GTAAGGTGCA
* *
92806234 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAGAAA
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCACATCTCAAGGCGATGCCATGTCCCAGAAA
*
92806299 TGGTCTTACACTGACTATCATCTCGTAGCC
65 TGGTCTTACACTGACTATCATCTCATAGCC
* * * * *
92806329 AATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGGCTGATG-CATGTCCTAGACA
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGGC-GATGCCATGTCCCAGAAA
* *
92806392 T-GTCTTACACT-AGCTCTCGTCTCA-ATGCC
65 TGGTCTTACACTGA-CTATCATCTCATA-GCC
*
92806421 GATGCCATGTCCTAGACATG
1 GATGCCATGTCCCAGACATG
92806441 CTATTATAAA
Statistics
Matches: 96, Mismatches: 12, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
91 2 0.02
92 24 0.25
93 49 0.51
94 18 0.19
95 3 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCACATCTCAAGGCGATGCCATGTCCCAGAAAT
GGTCTTACACTGACTATCATCTCATAGCC
Found at i:92810940 original size:24 final size:23
Alignment explanation
Indices: 92810904--92810950 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
92810894 TCTGGCATAT
92810904 AATAGGAAACTCATAAGAGCTTAA
1 AATAGGAAACTCATAA-AGCTTAA
* *
92810928 AATAGGAAGCTCATTAAGCTTAA
1 AATAGGAAACTCATAAAGCTTAA
92810951 CAGGTAACTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.23
Consensus pattern (23 bp):
AATAGGAAACTCATAAAGCTTAA
Found at i:92817357 original size:25 final size:25
Alignment explanation
Indices: 92817329--92817407 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
92817319 CTAATGGCCG
92817329 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
92817354 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
92817376 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
92817401 ATGTGAT
1 ATGTGAT
92817408 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:92817379 original size:47 final size:47
Alignment explanation
Indices: 92817313--92817600 Score: 486
Period size: 47 Copynumber: 6.1 Consensus size: 47
92817303 GAAATGATAG
92817313 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
92817360 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
92817407 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
92817456 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
92817503 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
92817550 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
92817597 TAAG
1 TAAG
92817601 TCCCGAAGGG
Statistics
Matches: 229, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
47 182 0.79
49 47 0.21
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:92817487 original size:96 final size:94
Alignment explanation
Indices: 92817313--92817600 Score: 486
Period size: 96 Copynumber: 3.0 Consensus size: 94
92817303 GAAATGATAG
92817313 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
92817378 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
92817407 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
92817472 ATGTGATGAATGTGAAAGTGTATATATGTGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * *
92817503 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
92817568 GTGATGGATGTGAAAGTGTATAAATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
92817597 TAAG
1 TAAG
92817601 TCCCGAAGGG
Statistics
Matches: 184, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
94 90 0.49
96 94 0.51
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:92817572 original size:143 final size:141
Alignment explanation
Indices: 92817313--92817600 Score: 495
Period size: 143 Copynumber: 2.0 Consensus size: 141
92817303 GAAATGATAG
92817313 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * *
92817378 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTG
92817443 TATATATATGTGA
131 TATA-A-ATGTGA
92817456 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * *
92817521 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTG
92817586 TATAAATGTGA
131 TATAAATGTGA
92817597 TAAG
1 TAAG
92817601 TCCCGAAGGG
Statistics
Matches: 138, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
141 10 0.07
142 1 0.01
143 127 0.92
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (141 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTG
TATAAATGTGA
Found at i:92819661 original size:43 final size:43
Alignment explanation
Indices: 92819613--92819715 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
92819603 TTGGTTTTCA
92819613 GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
* *
92819656 GCACTAAGTTTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
92819699 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
92819716 TTGAAATGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
Found at i:92819732 original size:29 final size:29
Alignment explanation
Indices: 92819697--92819770 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
92819687 GTTGTGAGAT
* *
92819697 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
92819726 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
92819755 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
92819771 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:92820204 original size:40 final size:40
Alignment explanation
Indices: 92820081--92820396 Score: 316
Period size: 40 Copynumber: 7.9 Consensus size: 40
92820071 TCGAATGATG
** *
92820081 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
92820121 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
92820161 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
**
92820201 TCCGGGCTAAGTTTCGAAGAGCATTCATGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
92820241 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
92820281 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
92820321 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
92820361 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
92820397 CGTGTATTCG
Statistics
Matches: 232, Mismatches: 40, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.00
40 212 0.91
41 19 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:92820219 original size:80 final size:80
Alignment explanation
Indices: 92820081--92820381 Score: 356
Period size: 80 Copynumber: 3.8 Consensus size: 80
92820071 TCGAATGATG
* * * *
92820081 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGGCTAAGTTCCGAAGAGCA
* * * *
92820143 TTGGTGCGAGTTACTAAA
64 TTCGTGCTAGTGA-TATA
* * *
92820161 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTTCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATT
*
92820226 CATGCTAGTGATATA
66 CGTGCTAGTGATATA
* *
92820241 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATT
92820306 CGTGCTAGTGATATA
66 CGTGCTAGTGATATA
* ** * * * * *
92820321 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAG
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAG
92820382 TAATCATGCT
Statistics
Matches: 192, Mismatches: 26, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
80 167 0.87
81 19 0.10
82 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATT
CGTGCTAGTGATATA
Found at i:92823868 original size:47 final size:47
Alignment explanation
Indices: 92823805--92824779 Score: 1896
Period size: 47 Copynumber: 20.7 Consensus size: 47
92823795 ATGATAGTAT
*
92823805 GGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92823852 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92823899 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92823946 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92823993 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92824040 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92824087 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92824134 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92824181 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92824228 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92824275 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92824322 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92824369 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92824416 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92824463 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92824510 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92824557 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
92824604 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
92824651 GGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
92824698 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
92824747 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
92824780 CCCGAAGGGC
Statistics
Matches: 921, Mismatches: 4, Indels: 3
0.99 0.00 0.00
Matches are distributed among these distances:
47 876 0.95
49 41 0.04
50 4 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:92824953 original size:37 final size:37
Alignment explanation
Indices: 92824897--92824975 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
92824887 CCGAGCTCTA
* * *
92824897 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
92824934 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
92824971 AAGAC
1 AAGAC
92824976 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:92829533 original size:22 final size:22
Alignment explanation
Indices: 92829505--92829548 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
92829495 AAACAGGGTC
92829505 ACACGCCCATGTGGACACAAGG
1 ACACGCCCATGTGGACACAAGG
*
92829527 ACACGCCCGTGTGGACACAAGG
1 ACACGCCCATGTGGACACAAGG
92829549 GCACACCCGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.32, G:0.30, T:0.09
Consensus pattern (22 bp):
ACACGCCCATGTGGACACAAGG
Found at i:92829562 original size:24 final size:22
Alignment explanation
Indices: 92829505--92829561 Score: 78
Period size: 22 Copynumber: 2.6 Consensus size: 22
92829495 AAACAGGGTC
* *
92829505 ACACGCCCATGTGGACACAAGG
1 ACACACCCGTGTGGACACAAGG
*
92829527 ACACGCCCGTGTGGACACAAGG
1 ACACACCCGTGTGGACACAAGG
*
92829549 GCACACCCGTGTG
1 ACACACCCGTGTG
92829562 TCATCAACAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.26, C:0.33, G:0.30, T:0.11
Consensus pattern (22 bp):
ACACACCCGTGTGGACACAAGG
Found at i:92841571 original size:28 final size:28
Alignment explanation
Indices: 92841531--92841592 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
92841521 ATGTACTAGA
*
92841531 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATAACCATT
*
92841559 ATACCCCTATGTATGCAAAATAACCTTT
1 ATACCCCTATGTATGCAAAATAACCATT
92841587 ATACCC
1 ATACCC
92841593 TTAGGGTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.35, C:0.27, G:0.06, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATAACCATT
Found at i:92841759 original size:27 final size:27
Alignment explanation
Indices: 92841698--92841790 Score: 118
Period size: 28 Copynumber: 3.3 Consensus size: 27
92841688 TGGAGGAAGC
92841698 GTTCTGGTGG-CTATGCCACAAATTATCT
1 GTTCTGGTGGCCT-TGCCACAAA-TATCT
*
92841726 GTTCTGGTGGCCTTGCCACATATATCT
1 GTTCTGGTGGCCTTGCCACAAATATCT
92841753 GTTCTGGTGGCAC-TGCCACAAAATATCT
1 GTTCTGGTGGC-CTTGCCAC-AAATATCT
92841781 GTATCTGGTG
1 GT-TCTGGTG
92841791 ACTCTGTCAC
Statistics
Matches: 59, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
27 22 0.37
28 28 0.47
29 9 0.15
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.34
Consensus pattern (27 bp):
GTTCTGGTGGCCTTGCCACAAATATCT
Found at i:92855932 original size:85 final size:85
Alignment explanation
Indices: 92855789--92855957 Score: 320
Period size: 85 Copynumber: 2.0 Consensus size: 85
92855779 TGTGAATTGC
*
92855789 AAAAGCAAGACTATCGATTTGAGGTGCACAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTT
1 AAAAGCAAGACTATCGATTTGAAGTGCACAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTT
92855854 AAGGGGGTTGCCAGCTGTAT
66 AAGGGGGTTGCCAGCTGTAT
*
92855874 AAAAGCAAGACTATCGATTTGAAGTGCGCAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTT
1 AAAAGCAAGACTATCGATTTGAAGTGCACAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTT
92855939 AAGGGGGTTGCCAGCTGTA
66 AAGGGGGTTGCCAGCTGTA
92855958 ATATTAGCAA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 82 1.00
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (85 bp):
AAAAGCAAGACTATCGATTTGAAGTGCACAAATAACGAAATAATCCGAGTTGAGTCTGCGGACTT
AAGGGGGTTGCCAGCTGTAT
Found at i:92857320 original size:108 final size:108
Alignment explanation
Indices: 92857131--92857345 Score: 421
Period size: 108 Copynumber: 2.0 Consensus size: 108
92857121 CTATGCGTCA
*
92857131 AGACAATTGAAGCCACACGAGAGAAATTATCCGACCCATGATCTTGAACTAGCCGCCATTGTGTT
1 AGACAATTGAAGCCACACGAGAGAAATTATCCGACCCATGATCTCGAACTAGCCGCCATTGTGTT
92857196 TGCATTGAAAATATGGCGACATTATTTGTTTGGTGAGAAGTGG
66 TGCATTGAAAATATGGCGACATTATTTGTTTGGTGAGAAGTGG
92857239 AGACAATTGAAGCCACACGAGAGAAATTATCCGACCCATGATCTCGAACTAGCCGCCATTGTGTT
1 AGACAATTGAAGCCACACGAGAGAAATTATCCGACCCATGATCTCGAACTAGCCGCCATTGTGTT
92857304 TGCATTGAAAATATGGCGACATTATTTGTTTGGTGAGAAGTG
66 TGCATTGAAAATATGGCGACATTATTTGTTTGGTGAGAAGTG
92857346 CCATGTGTTT
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 106 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (108 bp):
AGACAATTGAAGCCACACGAGAGAAATTATCCGACCCATGATCTCGAACTAGCCGCCATTGTGTT
TGCATTGAAAATATGGCGACATTATTTGTTTGGTGAGAAGTGG
Found at i:92857749 original size:82 final size:82
Alignment explanation
Indices: 92857612--92857775 Score: 310
Period size: 82 Copynumber: 2.0 Consensus size: 82
92857602 CAAATTCGGG
*
92857612 AAGCTCAGAAAGTCGATGATGAATTGGTTGCAAAACGAGTTGAGTGTGTTCCGAACAAGGAATCG
1 AAGCTCAGAAAGTCGATGATGAATTGGTTGCAAAACGAGCTGAGTGTGTTCCGAACAAGGAATCG
92857677 GAGTTTCAGATTGATGA
66 GAGTTTCAGATTGATGA
*
92857694 AAGCTCAGAAAGTTGATGATGAATTGGTTGCAAAACGAGCTGAGTGTGTTCCGAACAAGGAATCG
1 AAGCTCAGAAAGTCGATGATGAATTGGTTGCAAAACGAGCTGAGTGTGTTCCGAACAAGGAATCG
92857759 GAGTTTCAGATTGATGA
66 GAGTTTCAGATTGATGA
92857776 TGATGGTTGT
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (82 bp):
AAGCTCAGAAAGTCGATGATGAATTGGTTGCAAAACGAGCTGAGTGTGTTCCGAACAAGGAATCG
GAGTTTCAGATTGATGA
Found at i:92861995 original size:27 final size:25
Alignment explanation
Indices: 92861955--92862066 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 25
92861945 AGCATGGCTG
*
92861955 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTG-CAGAGCCA
92861981 CCAGATACAGATAATCGTCGCAGAGCCA
1 CCAGA-ACAGATAAT-GT-GCAGAGCCA
*
92862009 CCAGAACAGAAACATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGT-GCAGAGCCA
* *
92862036 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGT-GCAGAGCCA
92862063 CCAG
1 CCAG
92862067 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.08
27 52 0.69
28 16 0.21
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.14
Consensus pattern (25 bp):
CCAGAACAGATAATGTGCAGAGCCA
Found at i:92862047 original size:54 final size:54
Alignment explanation
Indices: 92861955--92862066 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
92861945 AGCATGGCTG
* *
92861955 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTCGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTCGCAGAGCCA
* * * *
92862009 CCAGAACAGAAACATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTCGCAGAGCCA
92862063 CCAG
1 CCAG
92862067 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.14
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTCGCAGAGCCA
Found at i:92869913 original size:27 final size:27
Alignment explanation
Indices: 92869813--92869924 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
92869803 AGCATGGCTG
* * *
92869813 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGATCAGATAATTGTGGCAGAGCCA
*
92869839 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAT-CAGATAATTGTGGCAGAGCCA
* *
92869867 CCATAGCAGA-AATATGTGGCAGAGCCA
1 CCAGATCAGATAAT-TGTGGCAGAGCCA
* * *
92869894 CCAGATCAGATAATTATGGCATAACCA
1 CCAGATCAGATAATTGTGGCAGAGCCA
92869921 CCAG
1 CCAG
92869925 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 8 0.11
27 45 0.64
28 17 0.24
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.16
Consensus pattern (27 bp):
CCAGATCAGATAATTGTGGCAGAGCCA
Found at i:92875526 original size:24 final size:23
Alignment explanation
Indices: 92875426--92875526 Score: 69
Period size: 24 Copynumber: 4.2 Consensus size: 23
92875416 CCCTATAATT
* * *
92875426 GGAAGCTCAAATAGAGCCATTTCA
1 GGAAGCTCATA-AGAGCCATATCG
*
92875450 GGAAGCTCATAAAGAGCC-TATCT
1 GGAAGCTCAT-AAGAGCCATATCG
* ** * *
92875473 GGAAGCTTATCCGCGCTATATAACG
1 GGAAGCTCATAAGAGCCATAT--CG
92875498 GGAAGCTCATAAGAGCCATAATCG
1 GGAAGCTCATAAGAGCCAT-ATCG
92875522 GGAAG
1 GGAAG
92875527 TTTACAAAGA
Statistics
Matches: 58, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
22 3 0.05
23 15 0.26
24 22 0.38
25 16 0.28
26 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.20
Consensus pattern (23 bp):
GGAAGCTCATAAGAGCCATATCG
Found at i:92875574 original size:24 final size:24
Alignment explanation
Indices: 92875523--92875574 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
92875513 CCATAATCGG
* * *
92875523 GAAGTTTACAAAGAACCATAAGAG
1 GAAGTTCACAAAGAACCATAACAA
* *
92875547 GAAGTTCACAAATAACCATATCAA
1 GAAGTTCACAAAGAACCATAACAA
92875571 GAAG
1 GAAG
92875575 CTCCAGACAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.17
Consensus pattern (24 bp):
GAAGTTCACAAAGAACCATAACAA
Found at i:92875598 original size:24 final size:23
Alignment explanation
Indices: 92875571--92875625 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
92875561 ACCATATCAA
*
92875571 GAAGCTCCAGACAGCCAATATCGG
1 GAAGCTCAAGACA-CCAATATCGG
* * * *
92875595 GAAGTTCAAGAGATCATTATCGG
1 GAAGCTCAAGACACCAATATCGG
92875618 GAAGCTCA
1 GAAGCTCA
92875626 CAAAGAGCCA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
23 15 0.60
24 10 0.40
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (23 bp):
GAAGCTCAAGACACCAATATCGG
Found at i:92878835 original size:19 final size:20
Alignment explanation
Indices: 92878811--92878857 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
92878801 ATTGTTTAGA
92878811 TATTGTATAA-ATTTTATT-T
1 TATTGT-TAATATTTTATTAT
*
92878830 TATTGTTAATTTTTTATTAT
1 TATTGTTAATATTTTATTAT
92878850 TATT-TTAA
1 TATTGTTAA
92878858 ACACATTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 3 0.12
19 17 0.68
20 5 0.20
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (20 bp):
TATTGTTAATATTTTATTAT
Found at i:92889924 original size:17 final size:17
Alignment explanation
Indices: 92889902--92889935 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
92889892 CCATTTTTGC
92889902 CACCCAAATCATCATAT
1 CACCCAAATCATCATAT
*
92889919 CACCCAAATTATCATAT
1 CACCCAAATCATCATAT
92889936 ATCTACAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.32, G:0.00, T:0.26
Consensus pattern (17 bp):
CACCCAAATCATCATAT
Found at i:92890093 original size:10 final size:10
Alignment explanation
Indices: 92890060--92890100 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
92890050 CATAATATAC
92890060 CATTTCTAAA
1 CATTTCTAAA
* *
92890070 CA--TGTAAG
1 CATTTCTAAA
92890078 CATTTCTAAA
1 CATTTCTAAA
92890088 CATTTCTAAA
1 CATTTCTAAA
92890098 CAT
1 CAT
92890101 GTAAGCATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
8 6 0.24
10 19 0.76
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.37
Consensus pattern (10 bp):
CATTTCTAAA
Found at i:92893683 original size:26 final size:26
Alignment explanation
Indices: 92893654--92893712 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
92893644 CCACATACAT
*
92893654 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
92893680 ATATCTGTTCTGGTGACTTCGTCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
92893706 ATATCTG
1 ATATCTG
92893713 GCAGTCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:92908873 original size:79 final size:79
Alignment explanation
Indices: 92908737--92908948 Score: 227
Period size: 79 Copynumber: 2.7 Consensus size: 79
92908727 CCTTCAAAAT
* *
92908737 TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCGCA
1 TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACA
92908802 AATGCCTTCGGGAC
66 AATGCCTTCGGGAC
* * *
92908816 TTAACCCGGATTTAG-TAACTCGCTCCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGC
1 TTAA-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGC
*
92908878 ACAAATGCCTT-TGGATC
63 ACAAATGCCTTCGGGA-C
* * * * *
92908895 TTAGTCCGGATATAG-TCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 TTA-ACCGGATATAGCT-AC-TCGCTCAAATGCCTTCGGGACATAGCCCGGATAT
92908949 CATTCGAATA
Statistics
Matches: 112, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
78 4 0.04
79 51 0.46
80 44 0.39
81 12 0.11
82 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACA
AATGCCTTCGGGAC
Found at i:92908874 original size:39 final size:40
Alignment explanation
Indices: 92908753--92908946 Score: 223
Period size: 40 Copynumber: 4.8 Consensus size: 40
92908743 GGATATAGCT
*
92908753 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
92908793 ACTCGCGCAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
92908833 ACTCGCTCCAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * * *
92908872 ACTCGCACAAATGCCTT-TGGATCTTAGTCCGGATATAGTC
1 ACTCGCTCAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* * *
92908912 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 AC-TCGCTCAAATGCCTTCGGGACTTAGCCCGGAT
92908947 ATCATTCGAA
Statistics
Matches: 131, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
38 2 0.02
39 31 0.24
40 69 0.53
41 26 0.20
42 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:92915315 original size:15 final size:15
Alignment explanation
Indices: 92915275--92915312 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
92915265 TGATTTTTGG
92915275 ATTAAATTGAATAGA
1 ATTAAATTGAATAGA
*
92915290 ATGAAAGTTGAAT-GA
1 ATTAAA-TTGAATAGA
92915305 ATTAAATT
1 ATTAAATT
92915313 TGATTATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
14 2 0.10
15 12 0.60
16 6 0.30
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (15 bp):
ATTAAATTGAATAGA
Found at i:92923449 original size:35 final size:35
Alignment explanation
Indices: 92923403--92923594 Score: 244
Period size: 35 Copynumber: 5.5 Consensus size: 35
92923393 ATGAACCTTG
92923403 TGTA-ATT-GGCCATATGTGATGATATATTGAATT
1 TGTATATTCGGCCATATGTGATGATATATTGAATT
*
92923436 TGTATATTCGGCCATGTGTGATGATATATTGAATT
1 TGTATATTCGGCCATATGTGATGATATATTGAATT
*
92923471 TGTATATTCGGCTATATGTGATGATATATTGAATT
1 TGTATATTCGGCCATATGTGATGATATATTGAATT
** * *
92923506 TGTATATTCGGTTATATGTGAGGATATTTTGAATTT
1 TGTATATTCGGCCATATGTGATGATATATTGAA-TT
* * *
92923542 TGTATAATCAGCCATATGTGATGATATAATGAACTT
1 TGTATATTCGGCCATATGTGATGATATATTGAA-TT
* * *
92923578 GGTATATCCGGTCATAT
1 TGTATATTCGGCCATAT
92923595 AGGTAAGTAT
Statistics
Matches: 137, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
33 4 0.03
34 3 0.02
35 88 0.64
36 42 0.31
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.43
Consensus pattern (35 bp):
TGTATATTCGGCCATATGTGATGATATATTGAATT
Found at i:92926886 original size:27 final size:28
Alignment explanation
Indices: 92926777--92926899 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
92926767 GAGATTGGCG
* * * *
92926777 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
92926806 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
92926834 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
92926862 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
92926889 CTGAGTGTGCG
1 CTAAGTGTGCG
92926900 GACTTAATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 23 0.27
28 47 0.55
29 15 0.18
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:92926889 original size:55 final size:57
Alignment explanation
Indices: 92926777--92926899 Score: 169
Period size: 55 Copynumber: 2.2 Consensus size: 57
92926767 GAGATTGGCG
* * * *
92926777 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
* *
92926834 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
*
92926889 CTGAGTGTGCG
1 CTAAGTGTGCG
92926900 GACTTAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 23 0.39
56 21 0.36
57 15 0.25
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (57 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
Found at i:92926910 original size:27 final size:27
Alignment explanation
Indices: 92926802--92926912 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
92926792 TAAATTGTAC
** * *
92926802 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGC-AACTTGAATATAT
** *
92926830 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
* *
92926858 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTGAATATAT
* *
92926885 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
92926912 A
1 A
92926913 CTTTTGAATC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 31 0.41
28 44 0.59
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTGAATATAT
Found at i:92935509 original size:17 final size:17
Alignment explanation
Indices: 92935487--92935525 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
92935477 CGAATTGGGT
*
92935487 CATGTAGTACCCACGGG
1 CATGTAGGACCCACGGG
* *
92935504 CATGTAGGCCCCATGGG
1 CATGTAGGACCCACGGG
92935521 CATGT
1 CATGT
92935526 GGGCCTCACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.21
Consensus pattern (17 bp):
CATGTAGGACCCACGGG
Found at i:92935530 original size:17 final size:17
Alignment explanation
Indices: 92935496--92935530 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
92935486 TCATGTAGTA
92935496 CCCACGGGCATGTAGGC
1 CCCACGGGCATGTAGGC
* *
92935513 CCCATGGGCATGTGGGC
1 CCCACGGGCATGTAGGC
92935530 C
1 C
92935531 TCACACGGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.14, C:0.34, G:0.37, T:0.14
Consensus pattern (17 bp):
CCCACGGGCATGTAGGC
Found at i:92940721 original size:3 final size:3
Alignment explanation
Indices: 92940713--92940761 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
92940703 GTTTTTCTTC
* * * *
92940713 AAT AAT AAT CAAT AAT AAT AAT AAT GAT GAT GAT GAT AAT AAT AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
92940759 AAT
1 AAT
92940762 GAAGGTCAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:92943649 original size:8 final size:8
Alignment explanation
Indices: 92943636--92943660 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
92943626 AAAAATTTAG
92943636 AATAATAA
1 AATAATAA
92943644 AATAATAA
1 AATAATAA
92943652 AATAATAA
1 AATAATAA
92943660 A
1 A
92943661 TGTAACGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAATAA
Found at i:92944031 original size:6 final size:6
Alignment explanation
Indices: 92944020--92944077 Score: 61
Period size: 6 Copynumber: 10.3 Consensus size: 6
92944010 TTATCCTTTC
* *
92944020 TTTCAT TTTCAT TTTCAT TTTCA- -ATCGT TTTCAT TTTCAT TTTCA-
1 TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT
*
92944065 -ATCAT TTTCAT TT
1 TTTCAT TTTCAT TT
92944078 GATTTGCTAC
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
4 5 0.12
6 37 0.88
ACGTcount: A:0.19, C:0.17, G:0.02, T:0.62
Consensus pattern (6 bp):
TTTCAT
Found at i:92944050 original size:22 final size:22
Alignment explanation
Indices: 92944022--92944077 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
92944012 ATCCTTTCTT
92944022 TCATTTTCATTTTCATTTTCAA
1 TCATTTTCATTTTCATTTTCAA
*
92944044 TCGTTTTCATTTTCATTTTCAA
1 TCATTTTCATTTTCATTTTCAA
92944066 TCATTTTCATTT
1 TCATTTTCATTT
92944078 GATTTGCTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.20, C:0.18, G:0.02, T:0.61
Consensus pattern (22 bp):
TCATTTTCATTTTCATTTTCAA
Found at i:92946052 original size:28 final size:28
Alignment explanation
Indices: 92946011--92946121 Score: 152
Period size: 28 Copynumber: 3.9 Consensus size: 28
92946001 CATACATGCT
* *
92946011 TATGGCCCACTAGGCCCAATCTCATTCA
1 TATGGCCCATTAGGCCCAATCACATTCA
* *
92946039 TATGGCCAATTAGGCCCAATCACATTTA
1 TATGGCCCATTAGGCCCAATCACATTCA
*
92946067 TGTGGCCCATTAGGCCCAATTCACATTCA
1 TATGGCCCATTAGGCCCAA-TCACATTCA
92946096 TATGG-CCATTAGGCCCAAATCACATT
1 TATGGCCCATTAGGCCC-AATCACATT
92946122 TACGGTCATG
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
28 59 0.81
29 14 0.19
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (28 bp):
TATGGCCCATTAGGCCCAATCACATTCA
Found at i:92946073 original size:56 final size:57
Alignment explanation
Indices: 92946013--92946123 Score: 181
Period size: 57 Copynumber: 2.0 Consensus size: 57
92946003 TACATGCTTA
*
92946013 TGGCCCACTAGGCCCAA-TCTCATTCATATGGCCAATTAGGCCC-AATCACATTTATG
1 TGGCCCACTAGGCCCAATTCACATTCATATGGCC-ATTAGGCCCAAATCACATTTATG
*
92946069 TGGCCCATTAGGCCCAATTCACATTCATATGGCCATTAGGCCCAAATCACATTTA
1 TGGCCCACTAGGCCCAATTCACATTCATATGGCCATTAGGCCCAAATCACATTTA
92946124 CGGTCATGCT
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
56 25 0.49
57 26 0.51
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (57 bp):
TGGCCCACTAGGCCCAATTCACATTCATATGGCCATTAGGCCCAAATCACATTTATG
Found at i:92957351 original size:43 final size:42
Alignment explanation
Indices: 92957256--92957355 Score: 103
Period size: 42 Copynumber: 2.4 Consensus size: 42
92957246 TATGTGTTAT
* * * * *
92957256 CATGTAAGACCACGTCTGGGACATTGGTATCGTACTTGATTT
1 CATGTAAGACCACGTCTAGGACAGTGGCATCATACTTGATTA
* * *
92957298 CGTGTGAGACC-CTGTCTAGGACAGTGGCATCAATATTTGATTA
1 CATGTAAGACCAC-GTCTAGGACAGTGGCATC-ATACTTGATTA
92957341 CATGTAAGACCACGT
1 CATGTAAGACCACGT
92957356 TTGGGATGTT
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
41 1 0.02
42 24 0.53
43 19 0.42
44 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (42 bp):
CATGTAAGACCACGTCTAGGACAGTGGCATCATACTTGATTA
Found at i:92957592 original size:29 final size:29
Alignment explanation
Indices: 92957541--92957596 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
92957531 ACAAGTGATG
*
92957541 ATATGTGACAAATGTATTAGAAAATATGCA
1 ATATGTGACAAATGAATTAG-AAATATGCA
*
92957571 ATATGTG-CAAATGAATTGGAAATATG
1 ATATGTGACAAATGAATTAGAAATATG
92957597 TGATATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 7 0.29
29 10 0.42
30 7 0.29
ACGTcount: A:0.45, C:0.05, G:0.20, T:0.30
Consensus pattern (29 bp):
ATATGTGACAAATGAATTAGAAATATGCA
Found at i:92957602 original size:28 final size:30
Alignment explanation
Indices: 92957539--92957602 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 30
92957529 GAACAAGTGA
*
92957539 TGATATGTGACAAATGTATTAGAAAATATG
1 TGATATGTGACAAATGAATTAGAAAATATG
** *
92957569 CAATATGTG-CAAATGAATT-GGAAATATG
1 TGATATGTGACAAATGAATTAGAAAATATG
92957597 TGATAT
1 TGATAT
92957603 ATATATATGA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
28 12 0.43
29 9 0.32
30 7 0.25
ACGTcount: A:0.42, C:0.05, G:0.20, T:0.33
Consensus pattern (30 bp):
TGATATGTGACAAATGAATTAGAAAATATG
Found at i:92961327 original size:19 final size:19
Alignment explanation
Indices: 92961292--92961329 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
92961282 CGTGTGGGTC
*
92961292 CACGAGCCCATTGGGCCCA
1 CACGAGCCCATTAGGCCCA
92961311 CACG-GCCCATCTAGGCCCA
1 CACGAGCCCAT-TAGGCCCA
92961330 ACGTGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.21, C:0.45, G:0.24, T:0.11
Consensus pattern (19 bp):
CACGAGCCCATTAGGCCCA
Found at i:92963697 original size:322 final size:322
Alignment explanation
Indices: 92963112--92963759 Score: 1269
Period size: 322 Copynumber: 2.0 Consensus size: 322
92963102 AACTAGGGTA
92963112 TAGTCGGAATAATGGTTTCAGGACCACAAATCTAACACAATAAAATTTTTTTATTATATTTTTAT
1 TAGTCGGAATAATGGTTTCAGGACCACAAATCTAACACAATAAAATTTTTTTATTATATTTTTAT
92963177 GGTCTACAATTTCATGGGATGATTTCGTGAAAATGTCATTCGAAAATTTTGACGTTTGGGCACTC
66 GGTCTACAATTTCATGGGATGATTTCGTGAAAATGTCATTCGAAAATTTTGACGTTTGGGCACTC
* *
92963242 AATTTGGTTAAAAGGACTAAATTGTAGAAAGTGAAAAAGTTGAGTTCTACTTGTTAGAGGTGTCT
131 AATTTGGTTAAAAGGACTAAATTATAGAAAGTGAAAAAGTTGAGTTCTACATGTTAGAGGTGTCT
92963307 AATTGTTATGAAATTTTAAACTGGAGGCCCTTAAATGGTAATTAGGCCATTGGATAATTAGTTGG
196 AATTGTTATGAAATTTTAAACTGGAGGCCCTTAAATGGTAATTAGGCCATTGGATAATTAGTTGG
92963372 ACAAAAATGGATATGAAATGGGTGAAATTGAATATTTTTAAGTTAGAGGCATTTTGGTAATC
261 ACAAAAATGGATATGAAATGGGTGAAATTGAATATTTTTAAGTTAGAGGCATTTTGGTAATC
92963434 TAGTCGGAATAATGGTTTCAGGACCACAAATCTAACACAATAAAATTTTTTTATTATATTTTTAT
1 TAGTCGGAATAATGGTTTCAGGACCACAAATCTAACACAATAAAATTTTTTTATTATATTTTTAT
*
92963499 GGTCTACAATTTCATGGGATGATTTCGTGAAAATGTCGTTCGAAAATTTTGACGTTTGGGCACTC
66 GGTCTACAATTTCATGGGATGATTTCGTGAAAATGTCATTCGAAAATTTTGACGTTTGGGCACTC
92963564 AATTTGGTTAAAAGGACTAAATTATAGAAAGTGAAAAAGTTGAGTTCTACATGTTAGAGGTGTCT
131 AATTTGGTTAAAAGGACTAAATTATAGAAAGTGAAAAAGTTGAGTTCTACATGTTAGAGGTGTCT
92963629 AATTGTTATGAAATTTTAAACTGGAGGCCCTTAAATGGTAATTAGGCCATTGGATAATTAGTTGG
196 AATTGTTATGAAATTTTAAACTGGAGGCCCTTAAATGGTAATTAGGCCATTGGATAATTAGTTGG
92963694 ACAAAAATGGATATGAAATGGGTGAAATTGAATATTTTTAAGTTAGAGGCATTTTGGTAATC
261 ACAAAAATGGATATGAAATGGGTGAAATTGAATATTTTTAAGTTAGAGGCATTTTGGTAATC
92963756 TAGT
1 TAGT
92963760 AATTAAAATG
Statistics
Matches: 323, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
322 323 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.36
Consensus pattern (322 bp):
TAGTCGGAATAATGGTTTCAGGACCACAAATCTAACACAATAAAATTTTTTTATTATATTTTTAT
GGTCTACAATTTCATGGGATGATTTCGTGAAAATGTCATTCGAAAATTTTGACGTTTGGGCACTC
AATTTGGTTAAAAGGACTAAATTATAGAAAGTGAAAAAGTTGAGTTCTACATGTTAGAGGTGTCT
AATTGTTATGAAATTTTAAACTGGAGGCCCTTAAATGGTAATTAGGCCATTGGATAATTAGTTGG
ACAAAAATGGATATGAAATGGGTGAAATTGAATATTTTTAAGTTAGAGGCATTTTGGTAATC
Found at i:92968191 original size:15 final size:15
Alignment explanation
Indices: 92968156--92968193 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
92968146 ATTATGATAT
*
92968156 TGTATCTTGGATTTG
1 TGTATCTTGGATTTC
*
92968171 TTTATCTTGGATTTC
1 TGTATCTTGGATTTC
92968186 TGTATCTT
1 TGTATCTT
92968194 AGACTTCTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.13, C:0.11, G:0.18, T:0.58
Consensus pattern (15 bp):
TGTATCTTGGATTTC
Found at i:92971953 original size:24 final size:24
Alignment explanation
Indices: 92971921--92971981 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
92971911 AAAATCCAAT
* * *
92971921 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAAT-TA
92971945 GCACTATGTGTGCGAGTGTAATTA
1 GCACTATGTGTGCGAGTGTAATTA
92971969 GCACTATGTGTGC
1 GCACTATGTGTGC
92971982 AAATACGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATTA
Found at i:92974248 original size:12 final size:14
Alignment explanation
Indices: 92974233--92974264 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
92974223 GTGAGAACAC
92974233 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
92974245 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
92974259 ATGTGT
1 ATGTGT
92974265 TTAAGATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:92974412 original size:101 final size:101
Alignment explanation
Indices: 92974281--92974462 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
92974271 TGGTTGTAGG
** *
92974281 TCACGTGTGTAGTACTAAGTGCAGTGTACTACATGTACCAGATAGTTAAGTCCCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTAAGTCACATGTGTAGTAC
*
92974346 TAAGTGCAGGCTACTATGCGTACCCGACAACTTCGA
66 TAAGTGCAAGCTACTATGCGTACCCGACAACTTCGA
* * * *
92974382 TCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTAAGTCACATGTGTAGTAC
*
92974447 TAAGTTCAAGCTACTA
66 TAAGTGCAAGCTACTA
92974463 CATGTGCCGG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTAAGTCACATGTGTAGTAC
TAAGTGCAAGCTACTATGCGTACCCGACAACTTCGA
Found at i:92974509 original size:49 final size:50
Alignment explanation
Indices: 92974230--92974511 Score: 226
Period size: 50 Copynumber: 5.6 Consensus size: 50
92974220 ATTGTGAGAA
* * ** ***
92974230 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTGTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGG-T-TAGGT
* * *
92974282 CACGTGTGTAGTACTAAGTGCAGTG-TACTACATGTACCAGATAGTTAAGT
1 CACATGTGTAGTACTAAGTGCAG-GCTACTACATGTACCAGATGGTTAGGT
* *** * *** * *
92974332 CCCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGA-TGGTTAGGT
* * * *
92974383 CACGTGTGTAGTACTAAGTGCAGACTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGT
* * * * *
92974433 CACATGTGTAGTACTAAGTTCAAGCTACTACATGTGCCGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGT
* * *
92974482 CGCATGTGTAGAACTATGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
92974512 TCGTACCAGA
Statistics
Matches: 180, Mismatches: 47, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
49 29 0.16
50 78 0.43
51 39 0.22
52 33 0.18
53 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGT
Found at i:92976443 original size:16 final size:15
Alignment explanation
Indices: 92976419--92976448 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
92976409 AACTGTTTTA
92976419 TTACAAATTTCACTC
1 TTACAAATTTCACTC
92976434 TTACATAATTTCACT
1 TTACA-AATTTCACT
92976449 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:92976764 original size:50 final size:50
Alignment explanation
Indices: 92976658--92976937 Score: 312
Period size: 50 Copynumber: 5.6 Consensus size: 50
92976648 ATCTGGTATG
* * * * *
92976658 CATAGTAGCCTGCACTTAGTACTATACATGCGACC-AACAATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACA
* *
92976707 CGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAACTATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACA
* * * * * * * *
92976757 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTGTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CTATCTGATACA
* *
92976808 CATAGTAGCCTGCACTTAGTACTACACATGGGACCTAACTATCT-AGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGA-TACA
* * * *
92976858 CATAGTAGTCTGCACTTAGTACTACACACGTGACCTACAACCATCTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACTATCTGATACA
*
92976910 CATAGTAGCCTGCACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
92976938 TGTGTTCTCA
Statistics
Matches: 193, Mismatches: 32, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
49 30 0.16
50 86 0.45
51 40 0.21
52 36 0.19
53 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACA
Found at i:92976833 original size:101 final size:101
Alignment explanation
Indices: 92976709--92976890 Score: 303
Period size: 101 Copynumber: 1.8 Consensus size: 101
92976699 CTGGTACACG
* * *
92976709 TAGTAGCTTGCACTTAGTACTACACACGTGACCTAACTATCT-GATACACGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGGGACCTAACTATCTAG-TACACATAGTAGCCTGCACT
92976773 TAGTACTACACACGTGATCGAAGTTGTCGGGTACGCA
65 TAGTACTACACACGTGATCGAAGTTGTCGGGTACGCA
* *
92976810 TAGTAGCCTGCACTTAGTACTACACATGGGACCTAACTATCTAGTACACATAGTAGTCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGGGACCTAACTATCTAGTACACATAGTAGCCTGCACTT
92976875 AGTACTACACACGTGA
66 AGTACTACACACGTGA
92976891 CCTACAACCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
101 74 0.99
102 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGGGACCTAACTATCTAGTACACATAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTGTCGGGTACGCA
Found at i:92979661 original size:15 final size:14
Alignment explanation
Indices: 92979617--92979661 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
92979607 TATATATAAC
*
92979617 AAGAAAACCAAGATT
1 AAGAAATCCAAGA-T
*
92979632 AAGAAGTCCAAGAT
1 AAGAAATCCAAGAT
92979646 AGAGAAATCCAAGAT
1 A-AGAAATCCAAGAT
92979661 A
1 A
92979662 CAATATCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 2 0.08
15 24 0.92
ACGTcount: A:0.56, C:0.13, G:0.18, T:0.13
Consensus pattern (14 bp):
AAGAAATCCAAGAT
Found at i:92983276 original size:50 final size:48
Alignment explanation
Indices: 92983199--92983428 Score: 237
Period size: 50 Copynumber: 4.6 Consensus size: 48
92983189 ATTGTGAGTA
* *
92983199 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGTT-GGT
* * * * *
92983249 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTTA-ATGACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATG--TT-GGT
* * * * *
92983300 CACGTGTGTAGTAGTAAGTGCCGGCTACTACGTGTATCAGATGGTGAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GT-TGGT
*
92983350 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGTTGGT
* *
92983399 CGCATGTGTAGTACTAAGTGCAAGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
92983429 TGCATATCAG
Statistics
Matches: 149, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
49 32 0.21
50 79 0.53
51 37 0.25
52 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (48 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGTTGGT
Found at i:92990981 original size:42 final size:44
Alignment explanation
Indices: 92990875--92991033 Score: 145
Period size: 44 Copynumber: 3.7 Consensus size: 44
92990865 ATATGGTTAT
* **
92990875 CGTGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTA
1 CGTGTAAGACCATGTCTGGGATGTTGGCATCGACTTATGATTTA
92990919 CGTGTAAGACCATGTCTGGGATGTTGGCATCGTAC-T-TGATTT-
1 CGTGTAAGACCATGTCTGGGATGTTGGCATCG-ACTTATGATTTA
* *
92990961 CGTGTAAGACTCTAT-T-TGGGACAG-TGGCATCGA-TATTTGA-TTA
1 CGTGTAAGAC-C-ATGTCTGGGA-TGTTGGCATCGACT-TATGATTTA
* * *
92991004 CATATAAGACCACGTCTGGGATGTTGGCAT
1 CGTGTAAGACCATGTCTGGGATGTTGGCAT
92991034 TGTACAAGCT
Statistics
Matches: 96, Mismatches: 8, Indels: 23
0.76 0.06 0.18
Matches are distributed among these distances:
41 2 0.02
42 29 0.30
43 31 0.32
44 32 0.33
45 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGGATGTTGGCATCGACTTATGATTTA
Found at i:92991032 original size:43 final size:43
Alignment explanation
Indices: 92990875--92991033 Score: 148
Period size: 43 Copynumber: 3.7 Consensus size: 43
92990865 ATATGGTTAT
** *
92990875 CGTGTAAGACCACGTCTGGGACATTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGATGTTGGCATCGA-TATTTGA-TTA
* * *
92990919 CGTGTAAGACCATGTCTGGGATGTTGGCATCG-TACTTGATTT
1 CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTA
* *
92990961 CGTGTAAGACTCTA--TTTGGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGAC-C-ACGTCTGGGA-TGTTGGCATCGATATTTGATTA
* *
92991004 CATATAAGACCACGTCTGGGATGTTGGCAT
1 CGTGTAAGACCACGTCTGGGATGTTGGCAT
92991034 TGTACAAGCT
Statistics
Matches: 93, Mismatches: 14, Indels: 17
0.75 0.11 0.14
Matches are distributed among these distances:
41 1 0.01
42 29 0.31
43 33 0.35
44 30 0.32
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTA
Found at i:92991255 original size:29 final size:29
Alignment explanation
Indices: 92991204--92991259 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
92991194 ACAAGTGATG
*
92991204 ATATGTGACAAATGTATGAGAAAATATGCA
1 ATATGTGACAAATGAATGAG-AAATATGCA
92991234 ATATGTG-CAAATGAATTG-GAAATATG
1 ATATGTGACAAATGAA-TGAGAAATATG
92991260 TGATATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 7 0.29
29 8 0.33
30 9 0.38
ACGTcount: A:0.45, C:0.05, G:0.21, T:0.29
Consensus pattern (29 bp):
ATATGTGACAAATGAATGAGAAATATGCA
Found at i:92991265 original size:28 final size:30
Alignment explanation
Indices: 92991202--92991265 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 30
92991192 GAACAAGTGA
*
92991202 TGATATGTGACAAATGTATGAGAAAATATG
1 TGATATGTGACAAATGAATGAGAAAATATG
**
92991232 CAATATGTG-CAAATGAATTG-G-AAATATG
1 TGATATGTGACAAATGAA-TGAGAAAATATG
92991260 TGATAT
1 TGATAT
92991266 ATATATATGA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
28 11 0.39
29 8 0.29
30 9 0.32
ACGTcount: A:0.42, C:0.05, G:0.22, T:0.31
Consensus pattern (30 bp):
TGATATGTGACAAATGAATGAGAAAATATG
Found at i:93000877 original size:43 final size:42
Alignment explanation
Indices: 93000730--93000877 Score: 124
Period size: 43 Copynumber: 3.5 Consensus size: 42
93000720 GTATGATTTT
* *
93000730 GTGTAAGA-CACGTCTGGGACATTGGCATCA-ATTTGACATTTAC
1 GTGTAAGACCACATCTGGGACAATGGCATCATATTTG--A-TTAC
** * * *
93000773 GTGTAAGACCATGTCTGAGAC-ATCGGCAACATATTTGATTTC
1 GTGTAAGACCACATCTGGGACAAT-GGCATCATATTTGATTAC
* *
93000815 GTGTACGACC-CTATTTGGGACAATGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-ATCTGGGACAATGGCATC-ATATTTGATTAC
*
93000858 ATGTAAGACCACATCTGGGA
1 GTGTAAGACCACATCTGGGA
93000878 TGTTGGCATT
Statistics
Matches: 83, Mismatches: 15, Indels: 14
0.74 0.13 0.12
Matches are distributed among these distances:
42 23 0.28
43 38 0.46
44 17 0.20
45 5 0.06
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCACATCTGGGACAATGGCATCATATTTGATTAC
Found at i:93020208 original size:92 final size:92
Alignment explanation
Indices: 93020102--93020280 Score: 340
Period size: 92 Copynumber: 1.9 Consensus size: 92
93020092 TAATTCAAAT
93020102 ATAACATTGCATTATTATTATCATACGAACTTACCTCGATCCAGAAACAGCAATTTACCATTTTA
1 ATAACATTGCATTATTATTATCATACGAACTTACCTCGATCCAGAAACAGCAATTTACCATTTTA
93020167 GTCCATAACCTTGTATTTTCCCGAAAC
66 GTCCATAACCTTGTATTTTCCCGAAAC
93020194 ATAACATTGCATTATTATTATCATACGAACTTACCTCGATCCAGAAACAGCAATTTACCATTTTA
1 ATAACATTGCATTATTATTATCATACGAACTTACCTCGATCCAGAAACAGCAATTTACCATTTTA
* *
93020259 GTCTATGACCTTGTATTTTCCC
66 GTCCATAACCTTGTATTTTCCC
93020281 AATTTAAGCC
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 85 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.35
Consensus pattern (92 bp):
ATAACATTGCATTATTATTATCATACGAACTTACCTCGATCCAGAAACAGCAATTTACCATTTTA
GTCCATAACCTTGTATTTTCCCGAAAC
Found at i:93021792 original size:15 final size:15
Alignment explanation
Indices: 93021736--93021800 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
93021726 TAAAGATAAC
*
93021736 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
93021750 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
93021765 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
93021780 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
93021795 AAGAAA
1 AAGAAA
93021801 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:93021802 original size:30 final size:31
Alignment explanation
Indices: 93021736--93021804 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
93021726 TAAAGATAAC
*
93021736 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
93021766 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
93021795 AAGAAACCCA
1 AAGAAACCCA
93021805 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:93028989 original size:8 final size:8
Alignment explanation
Indices: 93028976--93029005 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
93028966 AGTCCCTACT
93028976 TCACAAAA
1 TCACAAAA
93028984 TCACAAAA
1 TCACAAAA
93028992 TCACAAAA
1 TCACAAAA
93029000 TACACA
1 T-CACA
93029006 TAATTTGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (8 bp):
TCACAAAA
Found at i:93030178 original size:18 final size:18
Alignment explanation
Indices: 93030155--93030199 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
93030145 AGCCCAACTC
93030155 GCTCGATGATTTCATACG
1 GCTCGATGATTTCATACG
*
93030173 GCTCGATGATTTCATACT
1 GCTCGATGATTTCATACG
*
93030191 GCCCGATGA
1 GCTCGATGA
93030200 ACCTCGGACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.31
Consensus pattern (18 bp):
GCTCGATGATTTCATACG
Found at i:93033252 original size:42 final size:41
Alignment explanation
Indices: 93033192--93033275 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 41
93033182 AACCACAACT
93033192 ATAACAAGCTCGATTATTACTCTTTCCATAGCATTCACCAA
1 ATAACAAGCTCGATTATTACTCTTTCCATAGCATTCACCAA
* *
93033233 ANTAACAAGCTCGATTATTACTTTTTCCCTAGCATTCACCAA
1 A-TAACAAGCTCGATTATTACTCTTTCCATAGCATTCACCAA
93033275 A
1 A
93033276 GTTTCATCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 1 0.03
42 39 0.98
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.32
Consensus pattern (41 bp):
ATAACAAGCTCGATTATTACTCTTTCCATAGCATTCACCAA
Found at i:93036267 original size:8 final size:8
Alignment explanation
Indices: 93036254--93036283 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
93036244 AGTCCCTACT
93036254 TCACAAAA
1 TCACAAAA
93036262 TCACAAAA
1 TCACAAAA
93036270 TCACAAAA
1 TCACAAAA
93036278 TACACA
1 T-CACA
93036284 TAATTTGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (8 bp):
TCACAAAA
Found at i:93037499 original size:48 final size:48
Alignment explanation
Indices: 93037428--93037699 Score: 310
Period size: 48 Copynumber: 5.7 Consensus size: 48
93037418 TCGACACCAG
* * * **
93037428 GTCCCAGACATGGTCTTACACTAGCTTACATGTCGAGGCCGATGCCAT
1 GTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGTTGATGCCAT
* ** *
93037476 GTCCCAAACATGGTCTTACACTAGCTCTCATATAAATGTTGATGCCAT
1 GTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGTTGATGCCAT
* * * *
93037524 GTTCCAAACATGATCTTACACTGGCTCACATATCGAGGTCGATGCCAT
1 GTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGTTGATGCCAT
* * * ** * * *
93037572 GTCCTAGACATGGTCTTACACTAGCTCTCATATATATGTTAATGCAAT
1 GTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGTTGATGCCAT
* *
93037620 GTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCTGATGCCAT
1 GTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGTTGATGCCAT
* * *
93037668 GTTCCAAACATGGCCTTACACTGGCTCACATA
1 GTCCCAAACATGGTCTTACACTAGCTCACATA
93037700 ACCCTAGTAT
Statistics
Matches: 183, Mismatches: 41, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 183 1.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (48 bp):
GTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGTTGATGCCAT
Found at i:93037599 original size:96 final size:94
Alignment explanation
Indices: 93037435--93037699 Score: 377
Period size: 96 Copynumber: 2.8 Consensus size: 94
93037425 CAGGTCCCAG
* *
93037435 ACATGGTCTTACACTAGCTTACATGTCGAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAG
1 ACATGGTCTTACACTAGCTCACATATCGAGG-CGATGCCATGT-CCAAACATGGTCTTACACTAG
* *
93037500 CTCTCATATAAATGTTGATGCCATGTTCCAA
64 CTCTCATATAAATGTTAATGCAATGTTCCAA
* * *
93037531 ACATGATCTTACACTGGCTCACATATCGAGGTCGATGCCATGTCCTAGACATGGTCTTACACTAG
1 ACATGGTCTTACACTAGCTCACATATCGAGG-CGATGCCATGTCC-AAACATGGTCTTACACTAG
*
93037596 CTCTCATATATATGTTAATGCAATGTTCCAA
64 CTCTCATATAAATGTTAATGCAATGTTCCAA
* *
93037627 ACATGGTCTTACACTAGCTCACATATCGAGGCTGATGCCATGTTCCAAACATGGCCTTACACTGG
1 ACATGGTCTTACACTAGCTCACATATCGAGGC-GATGCCATG-TCCAAACATGGTCTTACACTAG
*
93037692 CTCACATA
64 CTCTCATA
93037700 ACCCTAGTAT
Statistics
Matches: 151, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
95 3 0.02
96 145 0.96
97 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (94 bp):
ACATGGTCTTACACTAGCTCACATATCGAGGCGATGCCATGTCCAAACATGGTCTTACACTAGCT
CTCATATAAATGTTAATGCAATGTTCCAA
Found at i:93056953 original size:46 final size:46
Alignment explanation
Indices: 93056886--93057014 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
93056876 TGTAACCTGC
* * *
93056886 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
93056932 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
93056978 CCATAAGTGAACTCAGATTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
93057015 TGCTCAACCA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:93058401 original size:20 final size:20
Alignment explanation
Indices: 93058372--93058410 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
93058362 GTGCAATCAA
*
93058372 GGGTATTGAAGTACAAACAG
1 GGGTACTGAAGTACAAACAG
93058392 GGGTACTGAAGTACAAACA
1 GGGTACTGAAGTACAAACA
93058411 AGGGCATGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.13, G:0.28, T:0.18
Consensus pattern (20 bp):
GGGTACTGAAGTACAAACAG
Found at i:93060427 original size:29 final size:31
Alignment explanation
Indices: 93060372--93060452 Score: 78
Period size: 29 Copynumber: 2.7 Consensus size: 31
93060362 AATGGTCAAT
* * * * *
93060372 TTTA-AATAGTTGAATGATCAAATTGTAACA
1 TTTACAATAATTGAGTGACCAAAGTGTAAAA
93060402 TTT-C-ATAATTGAGTGACCAAAGTGTAAAA
1 TTTACAATAATTGAGTGACCAAAGTGTAAAA
*
93060431 TTTACTAATAATTGAGTAACCA
1 TTTAC-AATAATTGAGTGACCA
93060453 TGATTGCAGT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
29 23 0.56
30 4 0.10
32 14 0.34
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.35
Consensus pattern (31 bp):
TTTACAATAATTGAGTGACCAAAGTGTAAAA
Found at i:93060551 original size:21 final size:20
Alignment explanation
Indices: 93060501--93060552 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
93060491 CTCTTAATTT
93060501 AATTAAACTTCTAATTTAGCTA
1 AATTAAA-TT-TAATTTAGCTA
* *
93060523 AA-AAAATTTAATTATAGTTA
1 AATTAAATTTAATT-TAGCTA
93060543 AATTAAATTT
1 AATTAAATTT
93060553 CTTGTCAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 5 0.20
20 9 0.36
21 9 0.36
22 2 0.08
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.42
Consensus pattern (20 bp):
AATTAAATTTAATTTAGCTA
Found at i:93063910 original size:16 final size:16
Alignment explanation
Indices: 93063889--93063919 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
93063879 AGGGTGTTTC
93063889 AATAAAATATAAAATA
1 AATAAAATATAAAATA
*
93063905 AATAAATTATAAAAT
1 AATAAAATATAAAAT
93063920 TTAATAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AATAAAATATAAAATA
Found at i:93068538 original size:19 final size:21
Alignment explanation
Indices: 93068494--93068541 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 21
93068484 TTATTACATC
93068494 AAATATTATATATTAATAAATTT
1 AAATATTATATATTAAT--ATTT
93068517 AAATATTATATATT-AT-TTT
1 AAATATTATATATTAATATTT
93068536 AAATAT
1 AAATAT
93068542 CATAAAAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.36
22 2 0.08
23 14 0.56
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
AAATATTATATATTAATATTT
Found at i:93070553 original size:19 final size:19
Alignment explanation
Indices: 93070525--93070573 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
93070515 AATTGGGTTC
* *
93070525 AAAAAATAATTTACTTGAG
1 AAAAATTAATTTAATTGAG
*
93070544 AAAAATTAATTTAATTGAT
1 AAAAATTAATTTAATTGAG
*
93070563 TAAAATTAATT
1 AAAAATTAATT
93070574 AAATAAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (19 bp):
AAAAATTAATTTAATTGAG
Found at i:93072101 original size:119 final size:119
Alignment explanation
Indices: 93071890--93072241 Score: 551
Period size: 119 Copynumber: 3.0 Consensus size: 119
93071880 CCATTTGTGA
* * * *
93071890 TGCCTCCGGTAGGGCAGGTACATTGCTAGCTGGATTGGTAGATCACGACATGCAAATATGTGTAA
1 TGCCTCCGGTAGGGTAGGTACATTGCTAACTGGATTGGCAGATCACGACATGCAGATATGTGTAA
* *
93071955 GACCATGTGGTAGCGATCCATGGCATCATATGACAATGAAAATATTCATGGTGT
66 GACCATGTGGTAGAGACCCATGGCATCATATGACAATGAAAATATTCATGGTGT
* * * *
93072009 TGCCTTCGGTAGGGTAGGTACATTGCTAACTGGACTGACAGATCACGACATGCTGATATGTGTAA
1 TGCCTCCGGTAGGGTAGGTACATTGCTAACTGGATTGGCAGATCACGACATGCAGATATGTGTAA
*
93072074 GACCATGTGGTAGAGACCCGTGGCATCATATGACAATGAAAATATTCATGGTGT
66 GACCATGTGGTAGAGACCCATGGCATCATATGACAATGAAAATATTCATGGTGT
** * *
93072128 TGCCTCCGACAAGGTAGGTACATTGTTAACTGGATTGGCAGATCACGACATGCAGATATGTGTAA
1 TGCCTCCGGTAGGGTAGGTACATTGCTAACTGGATTGGCAGATCACGACATGCAGATATGTGTAA
* *
93072193 GACCATGTGGTAGAGACCCATGACATCATATGATAATGAAAATATTCAT
66 GACCATGTGGTAGAGACCCATGGCATCATATGACAATGAAAATATTCAT
93072242 ATGAAAATAT
Statistics
Matches: 211, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
119 211 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (119 bp):
TGCCTCCGGTAGGGTAGGTACATTGCTAACTGGATTGGCAGATCACGACATGCAGATATGTGTAA
GACCATGTGGTAGAGACCCATGGCATCATATGACAATGAAAATATTCATGGTGT
Found at i:93074043 original size:21 final size:21
Alignment explanation
Indices: 93074014--93074057 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
93074004 TTTGTGTATC
*
93074014 CATCGATATTTCAAATAAATT
1 CATCAATATTTCAAATAAATT
*
93074035 CATCAATATTTCAAATATATT
1 CATCAATATTTCAAATAAATT
93074056 CA
1 CA
93074058 ATGGGTGACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.39
Consensus pattern (21 bp):
CATCAATATTTCAAATAAATT
Done.