Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 269 of 290
Found at i:93077757 original size:27 final size:27
Alignment explanation
Indices: 93077717--93077828 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
93077707 AGGAAGCGTC
*
93077717 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
93077744 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
** * *
93077771 CTAATGGCTTTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
93077799 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
93077825 CTGG
1 CTGG
93077829 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 13, Indels: 7
0.78 0.15 0.08
Matches are distributed among these distances:
26 8 0.12
27 46 0.67
28 15 0.22
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:93077823 original size:54 final size:54
Alignment explanation
Indices: 93077721--93077826 Score: 151
Period size: 54 Copynumber: 2.0 Consensus size: 54
93077711 AGCGTCCTGG
* *
93077721 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTTCTAA
1 TGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTAA
* * *
93077775 TGGCTTTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCT
1 TGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTTCT
93077827 GGCAGCCATG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 28 0.61
55 18 0.39
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.40
Consensus pattern (54 bp):
TGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTAA
Found at i:93078914 original size:11 final size:10
Alignment explanation
Indices: 93078886--93078919 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
93078876 AGCCTGTAAG
93078886 TATTCTGAAT
1 TATTCTGAAT
*
93078896 TTTTCTGAAT
1 TATTCTGAAT
93078906 ATATTCTGAAT
1 -TATTCTGAAT
93078917 TAT
1 TAT
93078920 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:93085699 original size:27 final size:27
Alignment explanation
Indices: 93085591--93085705 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
93085581 TGGAGGAAGC
*
93085591 GTTCTGGTGGCTATGCCACAATTATCT
1 GTTCTGGTGGCTCTGCCACAATTATCT
**
93085618 AATCTGGTGGCTCTGCCACATATT-TCT
1 GTTCTGGTGGCTCTGCCACA-ATTATCT
* *
93085645 GTCCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCACAATTATCT
* *
93085672 GTATCTGGTGACTCTGTCAC-ATTATCT
1 GT-TCTGGTGGCTCTGCCACAATTATCT
93085699 GTTCTGG
1 GTTCTGG
93085706 AAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
26 8 0.11
27 50 0.67
28 17 0.23
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAATTATCT
Found at i:93089198 original size:33 final size:33
Alignment explanation
Indices: 93089152--93089217 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
93089142 GTTTTTAATG
93089152 ATCTTTACATTTTTGGAGTCCCGATAACTTGAT
1 ATCTTTACATTTTTGGAGTCCCGATAACTTGAT
*
93089185 ATCTTTACGTTTTTGGAGTCCCGATAACTTGAT
1 ATCTTTACATTTTTGGAGTCCCGATAACTTGAT
93089218 TAAGCTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (33 bp):
ATCTTTACATTTTTGGAGTCCCGATAACTTGAT
Found at i:93090010 original size:55 final size:54
Alignment explanation
Indices: 93089905--93090097 Score: 203
Period size: 55 Copynumber: 3.6 Consensus size: 54
93089895 AGGGTTTAAG
* *
93089905 GATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTT-TCTAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGGCATGGC-ATTGGTAA-GTTCTATAAGGCAAA
* * * * *
93089960 GAAATCACGTAAGACCATGTC-AGGACATGGCATTGATAAGTTACTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGG-CATGGCATTGGTAAGTT-CTATAAGGCAAA
* * * *
93090015 GGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTATAAGGCAAA
* * *
93090068 GCTACCATGTAAGACCATGTCAAGACATGG
1 GATACCATGTAAGACCATGCCAAGGCATGG
93090098 NNNNNNNNNN
Statistics
Matches: 114, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
53 38 0.33
54 11 0.10
55 62 0.54
56 3 0.03
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTATAAGGCAAA
Found at i:93090379 original size:25 final size:24
Alignment explanation
Indices: 93090286--93090378 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 24
93090276 GGAGTTTAGC
93090286 GTGCTCTCTGATTATTAGCACATCA
1 GTGCTCTCTGA-TATTAGCACATCA
*
93090311 GTGCTCTCTG-T-TTAGCACATCG
1 GTGCTCTCTGATATTAGCACATCA
*
93090333 GTGCTCTCTGATATTTAGCACGTCA
1 GTGCTCTCTGATA-TTAGCACATCA
93090358 GTGCTCTCTGAATATTAGCAC
1 GTGCTCTCTG-ATATTAGCAC
93090379 GCTCTCTGAT
Statistics
Matches: 61, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
22 20 0.33
23 2 0.03
25 36 0.59
26 3 0.05
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.35
Consensus pattern (24 bp):
GTGCTCTCTGATATTAGCACATCA
Found at i:93091346 original size:13 final size:13
Alignment explanation
Indices: 93091330--93091357 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
93091320 CGATTTCTTC
93091330 TGGGTATTCTATA
1 TGGGTATTCTATA
93091343 TGGGTATTCTATA
1 TGGGTATTCTATA
93091356 TG
1 TG
93091358 CTCTTTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.46
Consensus pattern (13 bp):
TGGGTATTCTATA
Found at i:93091682 original size:24 final size:24
Alignment explanation
Indices: 93091650--93091698 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
93091640 AGTGATATTC
93091650 TTCTTTTGGATTTTCTCTGGGATA
1 TTCTTTTGGATTTTCTCTGGGATA
*
93091674 TTCTTTTGGATTTTTTCTGGGATA
1 TTCTTTTGGATTTTCTCTGGGATA
93091698 T
1 T
93091699 CATCGATCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.12, C:0.10, G:0.20, T:0.57
Consensus pattern (24 bp):
TTCTTTTGGATTTTCTCTGGGATA
Found at i:93098015 original size:9 final size:9
Alignment explanation
Indices: 93097998--93098125 Score: 101
Period size: 9 Copynumber: 15.0 Consensus size: 9
93097988 TATGTATTAA
*
93097998 GTAAATTAT
1 GTAAGTTAT
93098007 GTAAGTTAT
1 GTAAGTTAT
*
93098016 GTACGTGTA-
1 GTAAGT-TAT
93098025 -TAAGTTAT
1 GTAAGTTAT
93098033 GTAAGTTAT
1 GTAAGTTAT
*
93098042 GT-A-TTAA
1 GTAAGTTAT
*
93098049 GTAAGCTAT
1 GTAAGTTAT
*
93098058 GTAAGTTGT
1 GTAAGTTAT
93098067 GT-A-TTAT
1 GTAAGTTAT
*
93098074 GTAACTTAT
1 GTAAGTTAT
93098083 GTAAGTTAT
1 GTAAGTTAT
** *
93098092 CAAAGTAAT
1 GTAAGTTAT
*
93098101 GTATGTTAT
1 GTAAGTTAT
93098110 GTAAG-T-T
1 GTAAGTTAT
93098117 GTAAGTTAT
1 GTAAGTTAT
93098126 TATGTATTAT
Statistics
Matches: 92, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
7 18 0.20
8 10 0.11
9 62 0.67
10 2 0.02
ACGTcount: A:0.34, C:0.03, G:0.20, T:0.43
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:93098018 original size:25 final size:25
Alignment explanation
Indices: 93097987--93098091 Score: 124
Period size: 25 Copynumber: 4.2 Consensus size: 25
93097977 TGATATATAT
*
93097987 TTATGTATTAAGTAAATTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
93098012 TTATGTACGTGT-A-TAAGTTATGTAAG
1 TTATGTA--T-TAAGTAAGTTATGTAAG
*
93098038 TTATGTATTAAGTAAGCTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
* * *
93098063 TTGTGTATTATGTAACTTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
93098088 TTAT
1 TTAT
93098092 CAAAGTAATG
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
23 1 0.01
24 2 0.03
25 43 0.63
26 19 0.28
27 2 0.03
28 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.19, T:0.45
Consensus pattern (25 bp):
TTATGTATTAAGTAAGTTATGTAAG
Found at i:93098046 original size:51 final size:50
Alignment explanation
Indices: 93097987--93098091 Score: 138
Period size: 51 Copynumber: 2.1 Consensus size: 50
93097977 TGATATATAT
* * *
93097987 TTATGTATTAAGTAAATTATGTAAGTTATGTACGTGTATAAGTTATGTAAG
1 TTATGTATTAAGTAAACTATGTAAGTTATGTA-GTATATAACTTATGTAAG
* * * *
93098038 TTATGTATTAAGTAAGCTATGTAAGTTGTGTATTATGTAACTTATGTAAG
1 TTATGTATTAAGTAAACTATGTAAGTTATGTAGTATATAACTTATGTAAG
93098088 TTAT
1 TTAT
93098092 CAAAGTAATG
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
50 18 0.38
51 29 0.62
ACGTcount: A:0.33, C:0.03, G:0.19, T:0.45
Consensus pattern (50 bp):
TTATGTATTAAGTAAACTATGTAAGTTATGTAGTATATAACTTATGTAAG
Found at i:93098124 original size:16 final size:16
Alignment explanation
Indices: 93098032--93098151 Score: 51
Period size: 16 Copynumber: 7.6 Consensus size: 16
93098022 GTATAAGTTA
93098032 TGTAAGTTATGT-A-T
1 TGTAAGTTATGTAAGT
*
93098046 TAAGTAAGCTATGTAAGT
1 T--GTAAGTTATGTAAGT
* *
93098064 TGTGTA-TTATGTAACTT
1 TGT-AAGTTATGTAA-GT
**
93098081 ATGTAAGTTATCAAAGT
1 -TGTAAGTTATGTAAGT
*
93098098 AATGTATGTTATGTAAGT
1 --TGTAAGTTATGTAAGT
93098116 TGTAAGTTAT-T-A--
1 TGTAAGTTATGTAAGT
93098128 TGT-A-TTATGTAAGT
1 TGTAAGTTATGTAAGT
*
93098142 TGGAAGTTAT
1 TGTAAGTTAT
93098152 TATGTATTGT
Statistics
Matches: 78, Mismatches: 13, Indels: 28
0.66 0.11 0.24
Matches are distributed among these distances:
10 4 0.05
11 2 0.03
12 4 0.05
14 4 0.05
15 2 0.03
16 32 0.41
17 5 0.06
18 25 0.32
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.44
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:93098189 original size:25 final size:25
Alignment explanation
Indices: 93098106--93098444 Score: 360
Period size: 25 Copynumber: 14.2 Consensus size: 25
93098096 GTAATGTATG
*
93098106 TTATGTAAGTTGTAAGTTATTATGTA
1 TTATGTAAGTTGTAAGTTA-AATGTA
* *
93098132 TTATGTAAGTTGGAAGTTATTATGTA
1 TTATGTAAGTTGTAAGTTA-AATGTA
* *
93098158 TTGTGTAAGTTGCAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTAAATGTA
93098183 TTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTAAATGTA
93098208 TTATGTAAGTTGTAAGTTAAATG--
1 TTATGTAAGTTGTAAGTTAAATGTA
* *
93098231 -TAT-T-A--TGTCAGTCAAATGTA
1 TTATGTAAGTTGTAAGTTAAATGTA
93098251 TTATGTAAGTTGTAAGTTAAATG--
1 TTATGTAAGTTGTAAGTTAAATGTA
* *
93098274 -TAT-T-A--TGTCAGTCAAATGTA
1 TTATGTAAGTTGTAAGTTAAATGTA
93098294 TTATGTAAGTTGTAAGTTAAATG--
1 TTATGTAAGTTGTAAGTTAAATGTA
* *
93098317 -TAT-T-A--TGTCAGTCAAATGTA
1 TTATGTAAGTTGTAAGTTAAATGTA
93098337 TTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTAAATGTA
*
93098362 TTATGTAAGTTGTAAGTTATTATGTA
1 TTATGTAAGTTGTAAGTTA-AATGTA
93098388 TTATGTAAGTAATGTAAGTTAAATGTA
1 TTATGTAAGT--TGTAAGTTAAATGTA
*
93098415 TTATGTAAGTTGTAAGTTATTATGTA
1 TTATGTAAGTTGTAAGTTA-AATGTA
93098441 TTAT
1 TTAT
93098445 TTAATAAAAT
Statistics
Matches: 267, Mismatches: 21, Indels: 50
0.79 0.06 0.15
Matches are distributed among these distances:
18 33 0.12
20 3 0.01
21 12 0.04
22 12 0.04
23 3 0.01
25 114 0.43
26 66 0.25
27 15 0.06
28 9 0.03
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.45
Consensus pattern (25 bp):
TTATGTAAGTTGTAAGTTAAATGTA
Found at i:93098192 original size:18 final size:18
Alignment explanation
Indices: 93098193--93098425 Score: 71
Period size: 18 Copynumber: 11.4 Consensus size: 18
93098183 TTATGTAAGT
93098193 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
93098211 TGTAAGTTGTAAGTTAAATGTATTA
1 TGTAA---GT----TAAATGTATTA
* *
93098236 TGTCAGTCAAATGTATTA
1 TGTAAGTTAAATGTATTA
93098254 TGTAAGTTGTAAGTTAAATGTATTA
1 TGT-A-----A-GTTAAATGTATTA
* *
93098279 TGTCAGTCAAATGTATTA
1 TGTAAGTTAAATGTATTA
93098297 TGTAAGTTGTAAGTTAAATGTATTA
1 --T--G---TAAGTTAAATGTATTA
* *
93098322 TGTCAGTCAAATGTATTATGTAA
1 TGTAAGTTAAATG---TAT-T-A
93098345 GTTGTAAGTTAAATGTATTA
1 --TGTAAGTTAAATGTATTA
*
93098365 TGTAAGTTGTAA-GTTATTA
1 TGTAAGTT-AAATG-TATTA
*
93098384 TGT-A-TT--ATGTAAGTAA
1 TGTAAGTTAAATGT-A-TTA
93098400 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
93098418 TGTAAGTT
1 TGTAAGTT
93098426 GTAAGTTATT
Statistics
Matches: 163, Mismatches: 15, Indels: 74
0.65 0.06 0.29
Matches are distributed among these distances:
14 2 0.01
15 2 0.01
16 5 0.03
17 3 0.02
18 61 0.37
19 12 0.07
20 6 0.04
21 7 0.04
22 7 0.04
23 2 0.01
24 1 0.01
25 55 0.34
ACGTcount: A:0.35, C:0.03, G:0.19, T:0.43
Consensus pattern (18 bp):
TGTAAGTTAAATGTATTA
Found at i:93098232 original size:43 final size:43
Alignment explanation
Indices: 93098201--93098367 Score: 334
Period size: 43 Copynumber: 3.9 Consensus size: 43
93098191 GTTGTAAGTT
93098201 AAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTCAGTC
1 AAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTCAGTC
93098244 AAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTCAGTC
1 AAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTCAGTC
93098287 AAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTCAGTC
1 AAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTCAGTC
93098330 AAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGT
1 AAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGT
93098368 AAGTTGTAAG
Statistics
Matches: 124, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 124 1.00
ACGTcount: A:0.35, C:0.04, G:0.19, T:0.43
Consensus pattern (43 bp):
AAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTCAGTC
Found at i:93098384 original size:19 final size:19
Alignment explanation
Indices: 93098360--93098440 Score: 84
Period size: 19 Copynumber: 4.5 Consensus size: 19
93098350 AAGTTAAATG
93098360 TATTATGTAAGTTGTAAGT
1 TATTATGTAAGTTGTAAGT
*
93098379 TATTATGT-ATTATGTAAG-
1 TATTATGTAAGT-TGTAAGT
*
93098397 TA--ATGTAAG-T-TAAAT
1 TATTATGTAAGTTGTAAGT
93098412 GTATTATGTAAGTTGTAAGT
1 -TATTATGTAAGTTGTAAGT
93098432 TATTATGTA
1 TATTATGTA
93098441 TTATTTAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
14 3 0.06
15 1 0.02
16 6 0.12
17 1 0.02
18 11 0.22
19 24 0.48
20 4 0.08
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.47
Consensus pattern (19 bp):
TATTATGTAAGTTGTAAGT
Found at i:93099067 original size:17 final size:18
Alignment explanation
Indices: 93099039--93099074 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
93099029 CATTCAACAG
93099039 AAAATAGCAAAACAGAAA
1 AAAATAGCAAAACAGAAA
*
93099057 AAAATAG-AAAATAGAAA
1 AAAATAGCAAAACAGAAA
93099074 A
1 A
93099075 CAAAAAACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.75, C:0.06, G:0.11, T:0.08
Consensus pattern (18 bp):
AAAATAGCAAAACAGAAA
Found at i:93099088 original size:29 final size:29
Alignment explanation
Indices: 93099047--93099127 Score: 74
Period size: 29 Copynumber: 2.7 Consensus size: 29
93099037 AGAAAATAGC
*
93099047 AAAACAGAAAAAAATAGAAAATAGAAAACA-A
1 AAAACAG--AAAAATA-AAAATAAAAAACATA
*
93099078 AAAACAGAAAAATATAAAACAAAAAACATA
1 AAAACAGAAAAATA-AAAATAAAAAACATA
* *
93099108 AAATAAAGAAACATAAAAAT
1 AAA-ACAGAAAAATAAAAAT
93099128 GGTACGGAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
29 18 0.43
30 8 0.19
31 16 0.38
ACGTcount: A:0.77, C:0.07, G:0.06, T:0.10
Consensus pattern (29 bp):
AAAACAGAAAAATAAAAATAAAAAACATA
Found at i:93099089 original size:22 final size:22
Alignment explanation
Indices: 93099034--93099110 Score: 84
Period size: 22 Copynumber: 3.4 Consensus size: 22
93099024 CACTTCATTC
93099034 AACAG-AAAATAGCAAAACAGAAA
1 AACAGAAAAATAG-AAAACA-AAA
* *
93099057 AAAATAGAAAATAGAAAACAAAA
1 AACAGA-AAAATAGAAAACAAAA
*
93099080 AACAGAAAAATATAAAACAAAA
1 AACAGAAAAATAGAAAACAAAA
*
93099102 AACATAAAA
1 AACAGAAAA
93099111 TAAAGAAACA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
22 23 0.50
23 10 0.22
24 6 0.13
25 7 0.15
ACGTcount: A:0.75, C:0.09, G:0.08, T:0.08
Consensus pattern (22 bp):
AACAGAAAAATAGAAAACAAAA
Found at i:93099097 original size:15 final size:15
Alignment explanation
Indices: 93099034--93099110 Score: 54
Period size: 14 Copynumber: 5.1 Consensus size: 15
93099024 CACTTCATTC
*
93099034 AACAG-AAAATAGCAA
1 AACAGAAAAATA-TAA
*
93099049 AACAGAAAAAAATAGAA
1 AACAG--AAAAATATAA
*
93099066 AATAGAAAACA-A-AA
1 AACAGAAAA-ATATAA
93099080 AACAGAAAAATATAA
1 AACAGAAAAATATAA
*
93099095 AACA-AAAAACATAA
1 AACAGAAAAATATAA
93099109 AA
1 AA
93099111 TAAAGAAACA
Statistics
Matches: 52, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
13 1 0.02
14 22 0.42
15 16 0.31
16 1 0.02
17 6 0.12
18 6 0.12
ACGTcount: A:0.75, C:0.09, G:0.08, T:0.08
Consensus pattern (15 bp):
AACAGAAAAATATAA
Found at i:93099119 original size:15 final size:14
Alignment explanation
Indices: 93099071--93099125 Score: 65
Period size: 15 Copynumber: 3.8 Consensus size: 14
93099061 TAGAAAATAG
*
93099071 AAAACAAAAAACAGA
1 AAAACATAAAACA-A
*
93099086 AAAATATAAAACAA
1 AAAACATAAAACAA
*
93099100 AAAACATAAAATAA
1 AAAACATAAAACAA
93099114 AGAAACATAAAA
1 A-AAACATAAAA
93099126 ATGGTACGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
14 14 0.40
15 21 0.60
ACGTcount: A:0.78, C:0.09, G:0.04, T:0.09
Consensus pattern (14 bp):
AAAACATAAAACAA
Found at i:93099119 original size:22 final size:21
Alignment explanation
Indices: 93099055--93099126 Score: 72
Period size: 22 Copynumber: 3.3 Consensus size: 21
93099045 GCAAAACAGA
* * *
93099055 AAAAAATAGAAAATAGAAAAC
1 AAAAAACAAAAAATAAAAAAC
*
93099076 AAAAAACAGAAAAATATAAAAC
1 AAAAAACA-AAAAATAAAAAAC
*
93099098 AAAAAACATAAAATAAAGAAAC
1 AAAAAACAAAAAATAAA-AAAC
93099120 ATAAAAA
1 A-AAAAA
93099127 TGGTACGGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
21 14 0.33
22 24 0.56
23 5 0.12
ACGTcount: A:0.78, C:0.07, G:0.06, T:0.10
Consensus pattern (21 bp):
AAAAAACAAAAAATAAAAAAC
Found at i:93099800 original size:27 final size:27
Alignment explanation
Indices: 93099770--93099825 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
93099760 CAATTTGAAC
* *
93099770 TTACAAGTTTTGAATAGTGCTGTAGTG
1 TTACAAGTTTTGAACAGTGCTATAGTG
93099797 TTACAAGTTTTGAACAGTGCTATAGTG
1 TTACAAGTTTTGAACAGTGCTATAGTG
93099824 TT
1 TT
93099826 CAGTTCCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.09, G:0.23, T:0.41
Consensus pattern (27 bp):
TTACAAGTTTTGAACAGTGCTATAGTG
Found at i:93100733 original size:198 final size:197
Alignment explanation
Indices: 93100372--93100796 Score: 654
Period size: 197 Copynumber: 2.2 Consensus size: 197
93100362 TAATTAACCC
93100372 ATTTGCGGCGTTTATATACCAGCGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATCAGT
1 ATTTGCGGCGTTTATATACCAGCGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATCAGT
* * * *
93100437 TAACTCAAAGTCATTGCGTTTTAGAGAAAACGGCATCATCTCCAAAAAATTAAAAAAATTTTGCG
66 TAACTAAAACTCATGGCATTTTAGAGAAAACGGCATCATCTCCAAAAAATTAAAAAAATTTTGCG
*
93100502 GCGTTTACTAAAAACGCCACTAAAAGTAAATAAGAAAACGAAGCCGTTTTCCTAAACAATTTCTG
131 GCGTTTACTAAAAACGCCACTAAAAGTAAATAAGAAAACGAAGCCGTTTGCCTAAACAATTTCTG
93100567 TA
196 TA
* * *
93100569 ATTTGTGGCGTTTATATACCAGTGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATTAGT
1 ATTTGCGGCGTTTATATACCAGCGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATCAGT
* ** *
93100634 TAACTAAAACTCATGGCATTTTAGAGAAAACGGCATCGTCTCCATAAAAATTAAAACCATTTTGT
66 TAACTAAAACTCATGGCATTTTAGAGAAAACGGCATCATCTCCA-AAAAATTAAAAAAATTTTGC
* *
93100699 GGCGTTTACTAAAAGCGCCACT-AAAGTTAAATAAGAAAACGGAGCCGTTTGCCTAAACAATTTC
130 GGCGTTTACTAAAAACGCCACTAAAAG-TAAATAAGAAAACGAAGCCGTTTGCCTAAACAATTTC
93100763 TGTA
194 TGTA
* * * **
93100767 AATTGCGGCATTTATACATAAGCGCCACTA
1 ATTTGCGGCGTTTATATACCAGCGCCACTA
93100797 AATATTAGGC
Statistics
Matches: 205, Mismatches: 21, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
197 105 0.51
198 100 0.49
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (197 bp):
ATTTGCGGCGTTTATATACCAGCGCCACTAGTAATATGATCAAACGCTGTCGTTTCCCGATCAGT
TAACTAAAACTCATGGCATTTTAGAGAAAACGGCATCATCTCCAAAAAATTAAAAAAATTTTGCG
GCGTTTACTAAAAACGCCACTAAAAGTAAATAAGAAAACGAAGCCGTTTGCCTAAACAATTTCTG
TA
Found at i:93101250 original size:47 final size:47
Alignment explanation
Indices: 93101162--93101253 Score: 121
Period size: 47 Copynumber: 2.0 Consensus size: 47
93101152 GTTAATTTCG
* **
93101162 GTAATATTTAAAAAAATTAGATAAAATTATCAATCTCAGTTTTTTAA
1 GTAATATTTAAAAAAATTAGATAAAAATAAAAATCTCAGTTTTTTAA
* * * *
93101209 GTAATATTTATAAAAATTAGGTAAAAATAAAAATTTTAGTTTTTT
1 GTAATATTTAAAAAAATTAGATAAAAATAAAAATCTCAGTTTTTT
93101254 TATTTCTTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (47 bp):
GTAATATTTAAAAAAATTAGATAAAAATAAAAATCTCAGTTTTTTAA
Found at i:93101269 original size:18 final size:20
Alignment explanation
Indices: 93101241--93101289 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 20
93101231 AAAAATAAAA
*
93101241 ATTTTAGTTTTTTTA-TTTC
1 ATTTTACTTTTTTTATTTTC
*
93101260 TTTTTA--TTTTTTATTTTC
1 ATTTTACTTTTTTTATTTTC
93101278 ATTTTACTTTTT
1 ATTTTACTTTTT
93101290 GTAATTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 7 0.28
18 9 0.36
19 5 0.20
20 4 0.16
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.78
Consensus pattern (20 bp):
ATTTTACTTTTTTTATTTTC
Found at i:93101304 original size:9 final size:9
Alignment explanation
Indices: 93101292--93101325 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
93101282 TACTTTTTGT
*
93101292 AATTTTGAC
1 AATTTTTAC
93101301 AATTTTTTAC
1 AA-TTTTTAC
93101311 AATTTTTAC
1 AATTTTTAC
93101320 AATTTT
1 AATTTT
93101326 AAATTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.32, C:0.09, G:0.03, T:0.56
Consensus pattern (9 bp):
AATTTTTAC
Found at i:93101715 original size:123 final size:124
Alignment explanation
Indices: 93101490--93101757 Score: 298
Period size: 123 Copynumber: 2.2 Consensus size: 124
93101480 ACTCCAAACC
* *
93101490 CATAACCCTAACCCTTAACCCCTAAACTTTATTTAATATATAAAATAAAAAACACTAATTAATCT
1 CATAACCCTAACCCCTAACCCCTAAACCTTATTTAATATATAAAATAAAAAACACTAATTAATCT
* * * *
93101555 AAACCTTAAACCATAACCCAATCCCTAACCCCTAACCCTTAA-CCCTAAACCCTTAA-AT
66 AAACCTGAAACCATAACCCAATCCCGAACCCATAACCCTAAATCCCT-AACCCTTAACAT
** *
93101613 CATAACCTCT-ACCCCTAACCCCTAAACCTTATTTAATATAT-ACTTAAAACACACTAATTAATC
1 CATAACC-CTAACCCCTAACCCCTAAACCTTATTTAATATATAAAATAAAAAACACTAATTAATC
* **** *
93101676 TAAACCTGAAACTC-TAACCTAA-CACCGATTTTATAAACCCTAAATCCCTAACTCTTAACAT
65 TAAACCTGAAAC-CATAACCCAATC-CCGAACCCAT-AACCCTAAATCCCTAACCCTTAACAT
93101737 C-TAACCCCTAACCCCTAACCC
1 CATAA-CCCTAACCCCTAACCC
93101758 ATAACCCATA
Statistics
Matches: 122, Mismatches: 15, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
121 1 0.01
122 41 0.34
123 58 0.48
124 22 0.18
ACGTcount: A:0.40, C:0.32, G:0.01, T:0.26
Consensus pattern (124 bp):
CATAACCCTAACCCCTAACCCCTAAACCTTATTTAATATATAAAATAAAAAACACTAATTAATCT
AAACCTGAAACCATAACCCAATCCCGAACCCATAACCCTAAATCCCTAACCCTTAACAT
Found at i:93101747 original size:7 final size:7
Alignment explanation
Indices: 93101737--93101775 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
93101727 CTCTTAACAT
93101737 CTAACCC
1 CTAACCC
93101744 CTAACCC
1 CTAACCC
93101751 CTAACCC
1 CTAACCC
*
93101758 ATAACCC
1 CTAACCC
* *
93101765 ATAACCA
1 CTAACCC
93101772 CTAA
1 CTAA
93101776 TCTATAAACC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.15
Consensus pattern (7 bp):
CTAACCC
Found at i:93101834 original size:14 final size:15
Alignment explanation
Indices: 93101812--93101845 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
93101802 CTTAAACCAG
*
93101812 AATCCCTAA-TCCAT
1 AATCTCTAATTCCAT
93101826 AATCTCTAATTCCAT
1 AATCTCTAATTCCAT
93101841 AATCT
1 AATCT
93101846 ATAAAACTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (15 bp):
AATCTCTAATTCCAT
Found at i:93102292 original size:114 final size:113
Alignment explanation
Indices: 93102155--93102413 Score: 262
Period size: 114 Copynumber: 2.3 Consensus size: 113
93102145 GCTGAAGTAG
* * *
93102155 TTTTGCGGCGCTTTCCCAAAAACGCCGCTAA-TACTATTC-TTTAGCGGCGTTTCACC-ATAAAC
1 TTTTGCGGCGCTTTACAAAAAACGCCACTAATTA-TATTCTTTTA-CGGCGTTTCACCAAT-AAC
* * *
93102217 GCCAC-AAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTA
63 GCCACTAAA-ACTAATATACCTC-AAACCAAACGCTGCGTTTTCGTTAAGATA
* ****
93102269 TTTTGCGGCGC-TTACAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTTAATAACGC
1 TTTTGCGGCGCTTTACAAA-AAACGCCACTAATTATATTCTTTTACGGCGTTTCACCAATAACGC
* *
93102333 CACTAAAACTAATCTACCTCAAACCAAACGGTGCGTTTTCGTTAAGATA
65 CACTAAAACTAATATACCTCAAACCAAACGCTGCGTTTTCGTTAAGATA
* **
93102382 -TTTGCGGCGTTTTATC-GTAAACGCCACTAATT
1 TTTTGCGGCGCTTTA-CAAAAAACGCCACTAATT
93102414 CTAATATACC
Statistics
Matches: 122, Mismatches: 16, Indels: 16
0.79 0.10 0.10
Matches are distributed among these distances:
112 23 0.19
113 34 0.28
114 54 0.44
115 11 0.09
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (113 bp):
TTTTGCGGCGCTTTACAAAAAACGCCACTAATTATATTCTTTTACGGCGTTTCACCAATAACGCC
ACTAAAACTAATATACCTCAAACCAAACGCTGCGTTTTCGTTAAGATA
Found at i:93102406 original size:73 final size:75
Alignment explanation
Indices: 93102328--93102465 Score: 199
Period size: 74 Copynumber: 1.9 Consensus size: 75
93102318 TTTTTTTAAT
* * *
93102328 AACGCCACTAAAACTAATCTACC-TCAAACCAAACGGTGCGTTTTCGTTAAGATA-TTTGCGGCG
1 AACGCCACTAAAACTAATATACCTTAAAACCAAACGCTGCGTTTTCGTTAAGATATTTTGCGGCG
93102391 TTTTATCGTA
66 TTTTATCGTA
** * *
93102401 AACGCCACTAATTCTAATATACCTTAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCG
1 AACGCCACTAAAACTAATATACCTTAAAACCAAACGCTGCGTTTTCGTTAAGATATTTTGCGGCG
93102466 CTAACAAATA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
73 20 0.36
74 27 0.48
75 9 0.16
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (75 bp):
AACGCCACTAAAACTAATATACCTTAAAACCAAACGCTGCGTTTTCGTTAAGATATTTTGCGGCG
TTTTATCGTA
Found at i:93102417 original size:187 final size:187
Alignment explanation
Indices: 93102198--93102539 Score: 567
Period size: 187 Copynumber: 1.8 Consensus size: 187
93102188 CTATTCTTTA
93102198 GCGGCGTTTCACCATAAACGCCACAAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTT
1 GCGGCGTTTCACCATAAACGCCACAAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTT
* * * *
93102263 AAGGTATTTTGCGGCGCTTACAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTTAAT
66 AAGGTATTTTGCGGCGCTAACAAATAAACGCCACTAATGATGTTCTTTTACGGCGTTTGTTTAAA
93102328 AACGCCACTAAAACTAATCTACCTCAAACCAAACGGTGCGTTTTCGTTAAGATATTT
131 AACGCCACTAAAACTAATCTACCTCAAACCAAACGGTGCGTTTTCGTTAAGATATTT
* * * * *
93102385 GCGGCGTTTTATCGTAAACGCCACTAATTCTAATATACCTTAAAACCAAACGCTGCGTTTTGGTT
1 GCGGCGTTTCACCATAAACGCCACAAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTT
93102450 AAGGTATTTTGCGGCGCTAACAAATAAACGCCACTAATGATGTTCTTTTACGGCGTTTGTTTAAA
66 AAGGTATTTTGCGGCGCTAACAAATAAACGCCACTAATGATGTTCTTTTACGGCGTTTGTTTAAA
* * * *
93102515 AAGGGCACTAATATTAATCTACCTC
131 AACGCCACTAAAACTAATCTACCTC
93102540 TGGTTAAGAT
Statistics
Matches: 142, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
187 142 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (187 bp):
GCGGCGTTTCACCATAAACGCCACAAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTT
AAGGTATTTTGCGGCGCTAACAAATAAACGCCACTAATGATGTTCTTTTACGGCGTTTGTTTAAA
AACGCCACTAAAACTAATCTACCTCAAACCAAACGGTGCGTTTTCGTTAAGATATTT
Found at i:93102911 original size:188 final size:188
Alignment explanation
Indices: 93102593--93102972 Score: 575
Period size: 188 Copynumber: 2.0 Consensus size: 188
93102583 CTATTCTTTA
* ** * *
93102593 GCGGCGTTTTATAGAAAACGCCACTAATTCTGATATACAATTGATCCAAACGCTGCGTTTTGGTT
1 GCGGCGTTTTATAGAAAACGCCACTAATTCTAATATACAATAAAACCAAACGCTACGTTTTGGTT
** * * *
93102658 AAGGTATTTTGCGGTGCTTAAGAGTAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTTAAA
66 AAGGTATTTTGCGACGCTTAAGAATAAACGCCACTAATGATGTTCTTTTACGGCGTTTGTTTAAA
* *
93102723 AACGCCACTAACACTAATCTACCTCAAGACCAAACGGTGTGTTTTCGTTAAGATATTT
131 AACGCCACTAACACTAATCTACCTCAAGACCAAACGCTGCGTTTTCGTTAAGATATTT
* * *
93102781 GCGGCGTTTTATCGTAAACGCCACTAATTCTAATATAC-CTCAAAACCAAACGCTACGTTTTGGT
1 GCGGCGTTTTATAGAAAACGCCACTAATTCTAATATACAAT-AAAACCAAACGCTACGTTTTGGT
93102845 TAAGGTATTTTGCGACGCTTACA-AATAAACGCCACTAATGATGTTCTTTTACGGCGTTTGTTTA
65 TAAGGTATTTTGCGACGCTTA-AGAATAAACGCCACTAATGATGTTCTTTTACGGCGTTTGTTTA
* *
93102909 AAAACGCCACTAATACTAATCTACCTCGAGACCAAACGCTGCGTTTTCGTTAAGATATTT
129 AAAACGCCACTAACACTAATCTACCTCAAGACCAAACGCTGCGTTTTCGTTAAGATATTT
93102969 GCGG
1 GCGG
93102973 TGCTTTTTGT
Statistics
Matches: 173, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
187 1 0.01
188 171 0.99
189 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (188 bp):
GCGGCGTTTTATAGAAAACGCCACTAATTCTAATATACAATAAAACCAAACGCTACGTTTTGGTT
AAGGTATTTTGCGACGCTTAAGAATAAACGCCACTAATGATGTTCTTTTACGGCGTTTGTTTAAA
AACGCCACTAACACTAATCTACCTCAAGACCAAACGCTGCGTTTTCGTTAAGATATTT
Found at i:93102911 original size:396 final size:397
Alignment explanation
Indices: 93102176--93103146 Score: 1457
Period size: 396 Copynumber: 2.4 Consensus size: 397
93102166 TTTCCCAAAA
* * * * *
93102176 ACGCCGCTAATACTATTCTTTAGCGGCGTTTCACCA-TAAACGCCACAAATTCTAATATAC-CTC
1 ACGCCGCTAATACTATTCTTTAGCGGCGTTTTA-TAGAAAACGCCACTAATTCTAATATACAAT-
**
93102239 AAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTTACAAATAAACGCCACTAATTAT
64 TGAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTTA-AAATAAACGCCACTAATTAT
*
93102304 GTTCTTTTACGGCGTTTTTTTAATAACGCCACTAAAACTAATCTACCTCAAACCAAACGGTGCGT
128 GTTCTTTTACGGCGTTTTTTTAAAAACGCCACTAAAACTAATCTACCTCAAACCAAACGGTGCGT
*
93102369 TTTCGTTAAGATATTTGCGGCGTTTTATCGTAAACGCCACTAATTCTAATATACCTTAAAACCAA
193 TTTCGTTAAGATATTTGCGGCGTTTTATCGTAAACGCCACTAATTCTAATATACCTCAAAACCAA
* *
93102434 ACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTAACAAATAAACGCCACTAATGATGTTCTTTT
258 ACGCTACGTTTTGGTTAAGGTATTTTGCGACGCTAACAAATAAACGCCACTAATGATGTTCTTTT
* * *
93102499 ACGGCGTTTGTTTAAAAAGGGCACTAATATTAATCTACCT-CT-G-GTTAAGATATTTGCGGCGC
323 ACGGCGTTTGTTTAAAAACGCCACTAATACTAATCTACCTACTCGTGTTAAGATATTTGCGGCGC
* *
93102561 TTCTTGTGAT
388 TTCTTGTAAG
*
93102571 ACGCCGCTAATACTATTCTTTAGCGGCGTTTTATAGAAAACGCCACTAATTCTGATATACAATTG
1 ACGCCGCTAATACTATTCTTTAGCGGCGTTTTATAGAAAACGCCACTAATTCTAATATACAATTG
* * *
93102636 ATCCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGTGCTTAAGAGTAAACGCCACTAATTATGT
66 AACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTTAA-AATAAACGCCACTAATTATGT
* *
93102701 TCTTTTACGGCGTTTTTTTAAAAACGCCACTAACACTAATCTACCTCAAGACCAAACGGTGTGTT
130 TCTTTTACGGCGTTTTTTTAAAAACGCCACTAAAACTAATCTACCTCAA-ACCAAACGGTGCGTT
93102766 TTCGTTAAGATATTTGCGGCGTTTTATCGTAAACGCCACTAATTCTAATATACCTCAAAACCAAA
194 TTCGTTAAGATATTTGCGGCGTTTTATCGTAAACGCCACTAATTCTAATATACCTCAAAACCAAA
*
93102831 CGCTACGTTTTGGTTAAGGTATTTTGCGACGCTTACAAATAAACGCCACTAATGATGTTCTTTTA
259 CGCTACGTTTTGGTTAAGGTATTTTGCGACGCTAACAAATAAACGCCACTAATGATGTTCTTTTA
93102896 CGGCGTTTGTTTAAAAACGCCACTAATACTAATCTACCTCGAGACCAAACGCTGCGTTTTCGTTA
324 CGGCGTTTGTTTAAAAACGCCACTAATACTAATCTACCT---------A--CT-CG---T-GTTA
* *
93102961 AGATATTTGCGGTGCTTTTTGTAAG
373 AGATATTTGCGGCGCTTCTTGTAAG
* *
93102986 ACGCCGCTAATACTATTCTTTAGTGGCGTTTTATCGAAAACGCCACTAATTCTAATATACAATTG
1 ACGCCGCTAATACTATTCTTTAGCGGCGTTTTATAGAAAACGCCACTAATTCTAATATACAATTG
*
93103051 AACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGTTTAAAATAAACGCCACTAATTATGTT
66 AACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTTAAAATAAACGCCACTAATTATGTT
*
93103116 CTTTTACGGCGTTTTTTTAGAAACGCCACTA
131 CTTTTACGGCGTTTTTTTAAAAACGCCACTA
93103147 GTTGTTCTGG
Statistics
Matches: 520, Mismatches: 33, Indels: 27
0.90 0.06 0.05
Matches are distributed among these distances:
394 2 0.00
395 160 0.31
396 177 0.34
408 2 0.00
410 1 0.00
414 51 0.10
415 127 0.24
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (397 bp):
ACGCCGCTAATACTATTCTTTAGCGGCGTTTTATAGAAAACGCCACTAATTCTAATATACAATTG
AACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCTTAAAATAAACGCCACTAATTATGTT
CTTTTACGGCGTTTTTTTAAAAACGCCACTAAAACTAATCTACCTCAAACCAAACGGTGCGTTTT
CGTTAAGATATTTGCGGCGTTTTATCGTAAACGCCACTAATTCTAATATACCTCAAAACCAAACG
CTACGTTTTGGTTAAGGTATTTTGCGACGCTAACAAATAAACGCCACTAATGATGTTCTTTTACG
GCGTTTGTTTAAAAACGCCACTAATACTAATCTACCTACTCGTGTTAAGATATTTGCGGCGCTTC
TTGTAAG
Found at i:93103041 original size:113 final size:113
Alignment explanation
Indices: 93102782--93103130 Score: 386
Period size: 113 Copynumber: 3.1 Consensus size: 113
93102772 AAGATATTTG
* * *
93102782 CGGCGTTTTATCGTAAACGCCACTAATTCTAATATACCTCAAAACCAAACGCTACGTTTTGGTTA
1 CGGCGTTTTATCGAAAACGCCACTAATTCTAATATACCTC-GAACCAAACGCTGCGTTTTGGTTA
* *
93102847 AGGTATTTTGCGACGCTTACAAATAAACGCCACTAATGATGTTCTTTTA
65 AGGTATTTTGCGGCGCTTACAAATAAACGCCACTAATGATATTCTTTTA
** * * *
93102896 CGGCGTTTGT-TTAAAAACGCCACTAATACTAATCTACCTCGAGACCAAACGCTGCGTTTTCGTT
1 CGGCGTTT-TATCGAAAACGCCACTAATTCTAATATACCTCGA-ACCAAACGCTGCGTTTTGGTT
* * **** *
93102960 AAGATA-TTTGCGGTGCTT-TTTGTAAGACGCCGCTAAT-ACTATTC-TTTA
64 AAGGTATTTTGCGGCGCTTACAAATAA-ACGCCACTAATGA-TATTCTTTTA
* * *
93103008 GTGGCGTTTTATCGAAAACGCCACTAATTCTAATATACAATTGAACCAAACGCTGCGTTTTGGTT
1 -CGGCGTTTTATCGAAAACGCCACTAATTCTAATATAC-CTCGAACCAAACGCTGCGTTTTGGTT
* * *
93103073 AAGGTATTTTGCGGCGTTTA-AAATAAACGCCACTAATTATGTTCTTTTA
64 AAGGTATTTTGCGGCGCTTACAAATAAACGCCACTAATGATATTCTTTTA
93103122 CGGCGTTTT
1 CGGCGTTTT
93103131 TTTAGAAACG
Statistics
Matches: 190, Mismatches: 34, Indels: 23
0.77 0.14 0.09
Matches are distributed among these distances:
112 9 0.05
113 102 0.54
114 78 0.41
115 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (113 bp):
CGGCGTTTTATCGAAAACGCCACTAATTCTAATATACCTCGAACCAAACGCTGCGTTTTGGTTAA
GGTATTTTGCGGCGCTTACAAATAAACGCCACTAATGATATTCTTTTA
Found at i:93106261 original size:6 final size:6
Alignment explanation
Indices: 93106252--93106325 Score: 57
Period size: 6 Copynumber: 12.7 Consensus size: 6
93106242 AAGAAAAAGA
* * * * *
93106252 AAAATC AAAATC AAAGTC AAAATG AAAATG AAAATG AAAAT- GAAA--
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
93106297 AAAATC AAAAATC AAAAATC AAAAT- AAAA
1 AAAATC -AAAATC -AAAATC AAAATC AAAA
93106326 AAACAAAAAC
Statistics
Matches: 60, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
4 3 0.05
5 7 0.12
6 37 0.62
7 13 0.22
ACGTcount: A:0.70, C:0.08, G:0.07, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:93106313 original size:14 final size:14
Alignment explanation
Indices: 93106295--93106334 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
93106285 ATGAAAATGA
93106295 AAAAAATCAAAAAT
1 AAAAAATCAAAAAT
*
93106309 CAAAAATC-AAAAT
1 AAAAAATCAAAAAT
*
93106322 AAAAAAACAAAAA
1 AAAAAATCAAAAA
93106335 CAAGAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.80, C:0.10, G:0.00, T:0.10
Consensus pattern (14 bp):
AAAAAATCAAAAAT
Found at i:93106326 original size:20 final size:20
Alignment explanation
Indices: 93106297--93106334 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
93106287 GAAAATGAAA
* *
93106297 AAAATCAAAAATCAAAAATC
1 AAAATAAAAAAACAAAAATC
93106317 AAAATAAAAAAACAAAAA
1 AAAATAAAAAAACAAAAA
93106335 CAAGAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.79, C:0.11, G:0.00, T:0.11
Consensus pattern (20 bp):
AAAATAAAAAAACAAAAATC
Found at i:93106337 original size:6 final size:7
Alignment explanation
Indices: 93106296--93106334 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
93106286 TGAAAATGAA
93106296 AAAAATC
1 AAAAATC
93106303 AAAAATC
1 AAAAATC
93106310 AAAAATC
1 AAAAATC
*
93106317 -AAAATA
1 AAAAATC
*
93106323 AAAAAAC
1 AAAAATC
93106330 AAAAA
1 AAAAA
93106335 CAAGAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
6 5 0.18
7 23 0.82
ACGTcount: A:0.79, C:0.10, G:0.00, T:0.10
Consensus pattern (7 bp):
AAAAATC
Found at i:93107320 original size:7 final size:7
Alignment explanation
Indices: 93107308--93107349 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
93107298 TCTGAGTCAA
93107308 AAAAATG
1 AAAAATG
93107315 AAAAATG
1 AAAAATG
*
93107322 -AGAATG
1 AAAAATG
93107328 AAAAATG
1 AAAAATG
93107335 AAAAA-G
1 AAAAATG
93107341 AAAAATG
1 AAAAATG
93107348 AA
1 AA
93107350 GAGGCTAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 11 0.35
7 20 0.65
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:93107329 original size:13 final size:13
Alignment explanation
Indices: 93107309--93107349 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
93107299 CTGAGTCAAA
93107309 AAAATGAAAAATG
1 AAAATGAAAAATG
*
93107322 AGAATGAAAAATG
1 AAAATGAAAAATG
*
93107335 AAAAAGAAAAATG
1 AAAATGAAAAATG
93107348 AA
1 AA
93107350 GAGGCTAAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.12
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:93107347 original size:20 final size:20
Alignment explanation
Indices: 93107308--93107349 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
93107298 TCTGAGTCAA
*
93107308 AAAAATGAAAAATGAGAATG
1 AAAAATGAAAAATGAAAATG
93107328 AAAAATGAAAAA-GAAAAATG
1 AAAAATGAAAAATG-AAAATG
93107348 AA
1 AA
93107350 GAGGCTAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.12
Consensus pattern (20 bp):
AAAAATGAAAAATGAAAATG
Found at i:93108759 original size:87 final size:85
Alignment explanation
Indices: 93108626--93109083 Score: 291
Period size: 87 Copynumber: 5.3 Consensus size: 85
93108616 CTAGTAATCC
* * ** * *
93108626 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGCAG
1 ATCTCCCTGAGGTTACAGTGGAGCAGACGAAAATAAAGGATATTATCTCTCTGAAGTTACAGCAG
*
93108691 AGTTGATCGCATCAGGTATT
66 AGTAGATCGCATCAGGTATT
* * ** * *
93108711 ATCTCCCTGAGGTTATAGTGGAGTAGACCGAAGAATTTCA-GATATTATCTCCCT-AATATTACA
1 ATCTCCCTGAGGTTACAGTGGAGCAGA-CGAA-AA-TAAAGGATATTATCTCTCTGAA-GTTACA
* * * * *
93108774 GCAGAGCAGATTGAAGCTA-GTAACCT
62 GCAGAGTAGATCGCATC-AGGT-A-TT
* * ** *
93108800 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAG
1 ATCTCCCTGAGGTTACAGTGGAGCAGACGAAAATAAAGGATATTATCTCTCTGAAGTTACAGCAG
*
93108865 AGTAGATCGCATCAGGTCTT
66 AGTAGATCGCATCAGGTATT
* *** * * *
93108885 ATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGA-GATCTTATCTC-CTTGAAATTACAGC
1 ATCTCCCTGAGGTTACAGTGGAGCAGA-CGAAAATAAAGGATATTATCTCTC-TGAAGTTACAGC
* * ** * *
93108948 GGAGCAGATCTAAGACA-CTATCCT
64 AGAGTAGATCGCA-TCAGGTAT--T
* * * * ** * * *
93108972 ATCTCCCTTAGATTACAGTGAAGCGGATTAAAGTAACA-GATCTTATCTCTCTGAAGTTACAGTA
1 ATCTCCCTGAGGTTACAGTGGAGCAGACGAAAATAA-AGGATATTATCTCTCTGAAGTTACAGCA
* * *
93109036 GAGTAGATCGTATCCGGTCTT
65 GAGTAGATCGCATCAGGTATT
* *
93109057 ATCTCCCTGAGATTACAGCGGAGCAGA
1 ATCTCCCTGAGGTTACAGTGGAGCAGA
93109084 TTGAAGCAGA
Statistics
Matches: 282, Mismatches: 73, Indels: 36
0.72 0.19 0.09
Matches are distributed among these distances:
84 1 0.00
85 106 0.38
86 19 0.07
87 123 0.44
88 9 0.03
89 24 0.09
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (85 bp):
ATCTCCCTGAGGTTACAGTGGAGCAGACGAAAATAAAGGATATTATCTCTCTGAAGTTACAGCAG
AGTAGATCGCATCAGGTATT
Found at i:93108931 original size:44 final size:44
Alignment explanation
Indices: 93108576--93109438 Score: 298
Period size: 44 Copynumber: 19.9 Consensus size: 44
93108566 GAAGAATTTT
* *
93108576 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAG
* * *** *
93108620 TA-ATC-CATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAA
1 -AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAG
** ** ** * * *
93108662 AGGATCTTATCTATCTGA-AGTTACAGCAGAGTTGATCGCA-TCAG
1 A-GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCCAG
* * * * ** * *
93108706 -G-TATTATCTCCCTGAGGTTATAGTGGAGTAGACCGAAG-AATTTC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCA---G
* * * ** *
93108750 AGATATTATCTCCCTAATATTACAGCAGAGCAGATTGAAGCTAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAG
* * *** *
93108794 TA-A-CCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAA
1 -AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAG
* ** * * * *
93108836 AGGATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGCA-TCAG
1 A-GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCCAG
*
93108880 -G-TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAG
* * * *
93108922 AGATCTTATCTCCTTGAAATTACAGCGGAGCAGATCT-AAGACA-
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGAT-TGAAGCCAG
** * * * * * ** *
93108965 CTATCCTATCTCCCTTAGATTACAGTGAAGCGGATTAAAGTAAC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAG
* * * * * *
93109009 AGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGTATCC-G
1 AGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCCAG
*
93109052 -G-TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-CAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAG
* * * * ** * * ** *
93109093 ATAATCCTATCTCCTTGAGATTATAGTGGAGTGGGTTAAAGTAAC
1 A-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAG
* * * * * *
93109138 AGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGTATCC-G
1 AGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCCAG
* * * **
93109181 -G-TCTTATCTCTCTGAAATTACAGCGGAGCAGATTGAAG-TTG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAG
* * * ** *** *
93109222 ATAACCCTATCTCCCTGAGATTACAGTGGAGTGGATT-AAAATAA
1 A-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAG
* * ** * *
93109266 AGGATCTTATCTCTCTGA-AGTTACAGTAGAGTGGATTGCA-TCAG
1 A-GATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCCAG
* * ** * *
93109310 -G-TCTTATCTCCCTGAGGTTACAGTGGAGTAGAACGAAG-AATTTC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCA---G
*
93109354 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAG
* ** *
93109398 AGATCTTATCTCCCTGAGATTATAACGGAGTAGATTGAAGC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGC
93109439 TAGTAATCCT
Statistics
Matches: 586, Mismatches: 182, Indels: 101
0.67 0.21 0.12
Matches are distributed among these distances:
40 1 0.00
41 144 0.25
42 19 0.03
43 94 0.16
44 254 0.43
45 10 0.02
46 62 0.11
47 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (44 bp):
AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAG
Found at i:93109021 original size:172 final size:171
Alignment explanation
Indices: 93108576--93109093 Score: 713
Period size: 174 Copynumber: 3.0 Consensus size: 171
93108566 GAAGAATTTT
*
93108576 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC-ATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCTAGT-ATCCTATCTCCCTGAGATT
* *
93108640 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGCAGAGTTGATCGCATCA
65 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCA
* * * ** * *
93108705 GGTATTATCTCCCTGAGGTTATAGTGGAGTAGACCGAAGAATTTC
130 GGTCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCA---G
* * *
93108750 AGATATTATCTCCCT-AATATTACAGCAGAGCAGATTGAAGCTAGTAACCTATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAA-ATTACAGCGGAGCAGATTGAAGCTAGTATCCTATCTCCCTGAGATT
93108814 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCA
65 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCA
93108879 GGTCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
130 GGTCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG-CAG
* * *
93108922 AGATCTTATCTCCTTGAAATTACAGCGGAGCAGATCT-AAGAC-ACTATCCTATCTCCCTTAGAT
1 AGATCTTATCTCCCTGAAATTACAGCGGAGCAGAT-TGAAG-CTAGTATCCTATCTCCCTGAGAT
* * * *
93108985 TACAGTGAAGCGGATTAAAGTAACA-GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTAT
64 TACAGTGGAGCGGATTAAAATAA-AGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCAT
* * *
93109049 CCGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAG
128 CAGGTCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCAG
93109093 A
1 A
93109094 TAATCCTATC
Statistics
Matches: 311, Mismatches: 26, Indels: 17
0.88 0.07 0.05
Matches are distributed among these distances:
171 4 0.01
172 146 0.47
173 9 0.03
174 151 0.49
175 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (171 bp):
AGATCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCTAGTATCCTATCTCCCTGAGATTA
CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAG
GTCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCAG
Found at i:93109104 original size:85 final size:84
Alignment explanation
Indices: 93108626--93109105 Score: 306
Period size: 85 Copynumber: 5.6 Consensus size: 84
93108616 CTAGTAATCC
* ** *
93108626 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATA-AAGGATCTTATCTATCTGAAGTTACAGCA
1 ATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCAGAA--ATCTTATCTCTCTGAAGTTACAGCA
* * * *
93108690 GAGTTGATCGCATCAGGTATT
64 GAGTAGATCGTATCCGGTCTT
* * * *** * * * * * *
93108711 ATCTCCCTGAGGTTATAGTGGAGTAGACCGAAGAATTTCAGATATTATCTCCCT-AATATTACAG
1 ATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCA---GAAATCTTATCTCTCTGAA-GTTACAG
* * * * ** *
93108775 CAGAGCAGATTGAAGCTAGTAACCT
62 CAGAGTAGATCGTATCCGGT--CTT
* **
93108800 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATA-AAGGATCTTATCTCTCTGAAGTTACAGCA
1 ATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCAGAA--ATCTTATCTCTCTGAAGTTACAGCA
* *
93108864 GAGTAGATCGCATCAGGTCTT
64 GAGTAGATCGTATCCGGTCTT
* * * * *
93108885 ATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTC-CTTGAAATTACAGCG
1 ATCTCCCTGAGATTACAGTGGAGCAGATTAAAG-CAGAAATCTTATCTCTC-TGAAGTTACAGCA
* * ** *
93108949 GAGCAGATC-TAAGACACTATCCT
64 GAGTAGATCGT-A-TC-CGGTCTT
* * * * *
93108972 ATCTCCCTTAGATTACAGTGAAGCGGATTAAAGTA-ACAGATCTTATCTCTCTGAAGTTACAGTA
1 ATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCAGA-A-ATCTTATCTCTCTGAAGTTACAGCA
93109036 GAGTAGATCGTATCCGGTCTT
64 GAGTAGATCGTATCCGGTCTT
* * *
93109057 ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAGATAATCCTATCTC
1 ATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCAGA-AATCTTATCTC
93109106 CTTGAGATTA
Statistics
Matches: 293, Mismatches: 81, Indels: 42
0.70 0.19 0.10
Matches are distributed among these distances:
84 1 0.00
85 131 0.45
86 8 0.03
87 121 0.41
88 4 0.01
89 28 0.10
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (84 bp):
ATCTCCCTGAGATTACAGTGGAGCAGATTAAAGCAGAAATCTTATCTCTCTGAAGTTACAGCAGA
GTAGATCGTATCCGGTCTT
Found at i:93109106 original size:172 final size:172
Alignment explanation
Indices: 93108578--93109115 Score: 710
Period size: 172 Copynumber: 3.1 Consensus size: 172
93108568 AGAATTTTAG
*
93108578 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC-ATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCTAGT-ATCCTATCTCCCTGAGATTAC
* *
93108642 AGTGGAGCGGATTAAAATAAAGGATCTTATCTATCTGAAGTTACAGCAGAGTTGATCGCATCAGG
65 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGG
* * * ** * **
93108707 TATTATCTCCCTGAGGTTATAGTGGAGTAGACCGAAGAATTTCA
130 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCAGAT-A
* * *
93108751 GATATTATCTCCCT-AATATTACAGCAGAGCAGATTGAAGCTAGTAACCTATCTCCCTGAGATTA
1 -ATCTTATCTCCCTGAA-ATTACAGCGGAGCAGATTGAAGCTAGTATCCTATCTCCCTGAGATTA
93108815 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAG
64 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAG
*
93108880 GTCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGA-G
129 GTCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG-CAGATA
* * *
93108924 ATCTTATCTCCTTGAAATTACAGCGGAGCAGATCT-AAGAC-ACTATCCTATCTCCCTTAGATTA
1 ATCTTATCTCCCTGAAATTACAGCGGAGCAGAT-TGAAG-CTAGTATCCTATCTCCCTGAGATTA
* * * * *
93108987 CAGTGAAGCGGATTAAAGTAACA-GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCC
64 CAGTGGAGCGGATTAAAATAA-AGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCA
* *
93109051 GGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAGATA
128 GGTCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCAGATA
* * *
93109096 ATCCTATCTCCTTGAGATTA
1 ATCTTATCTCCCTGAAATTA
93109116 TAGTGGAGTG
Statistics
Matches: 325, Mismatches: 31, Indels: 18
0.87 0.08 0.05
Matches are distributed among these distances:
171 4 0.01
172 162 0.50
173 9 0.03
174 149 0.46
175 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (172 bp):
ATCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCTAGTATCCTATCTCCCTGAGATTACA
GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGGT
CTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCAGATA
Found at i:93109137 original size:129 final size:129
Alignment explanation
Indices: 93108925--93109324 Score: 576
Period size: 129 Copynumber: 3.1 Consensus size: 129
93108915 AAGCCAGAGA
* *
93108925 TCTTATCTCCTTGAAATTACAGCGGAGCAGATCT-AAGACA-CT-ATCCTATCTCCCTT-AGATT
1 TCTTATCTCCCTGAAATTACAGCGGAGCAGAT-TGAAG-CAGATAATCCTATCT-CCTTGAGATT
* *
93108986 ACAGTGAAGCGGATTAAAGTAACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCC
63 ACAGTGGAGTGGATTAAAGTAACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCC
93109051 GG
128 GG
* *
93109053 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAGATAATCCTATCTCCTTGAGATTATA
1 TCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCAGATAATCCTATCTCCTTGAGATTACA
*
93109118 GTGGAGTGGGTTAAAGTAACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCCGG
66 GTGGAGTGGATTAAAGTAACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCCGG
* ** * *
93109182 TCTTATCTCTCTGAAATTACAGCGGAGCAGATTGAAGTTGATAACCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCAGATAATCCTATCTCCTTGAGATTACA
* * * * *
93109247 GTGGAGTGGATTAAAATAA-AGGATCTTATCTCTCTGAAGTTACAGTAGAGTGGATTGCATCAGG
66 GTGGAGTGGATTAAAGTAACA-GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCCGG
93109311 TCTTATCTCCCTGA
1 TCTTATCTCCCTGA
93109325 GGTTACAGTG
Statistics
Matches: 246, Mismatches: 21, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
127 3 0.01
128 39 0.16
129 204 0.83
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30
Consensus pattern (129 bp):
TCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCAGATAATCCTATCTCCTTGAGATTACA
GTGGAGTGGATTAAAGTAACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTATCCGG
Found at i:93109508 original size:44 final size:44
Alignment explanation
Indices: 93109229--93109516 Score: 156
Period size: 44 Copynumber: 6.6 Consensus size: 44
93109219 TTGATAACCC
*
93109229 TATCTCCCTG-AGATTACAGTGGAGTGGATTAAAATAAAGGATCT
1 TATCTCCCTGAAG-TTACAGTGGAGTGGATTAAAATAAAAGATCT
* * ** * *
93109273 TATCTCTCTGAAGTTACAGTAGAGTGGATT-GCAT--CAGGTCT
1 TATCTCCCTGAAGTTACAGTGGAGTGGATTAAAATAAAAGATCT
* * ** ***
93109314 TATCTCCCTGAGGTTACAGTGGAGTAGAACGAAGAATTTCAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGT-GGATTAA-AATAAAAGATCT
* ** * *** *
93109360 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGTGGATTAAAATAAAAGATCT
* ** * ** ** *
93109404 TATCTCCCTG-AGATTATAACGGAGTAGATTGAAGCTAGTA-ATCC
1 TATCTCCCTGAAG-TTACAGTGGAGTGGATT-AAAATAAAAGATCT
* * *
93109448 TAACTCTCTAAAGTTACAGTGGAGTGGATTAAAATAAAAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGTGGATTAAAATAAAAGATCT
** *
93109492 TATCTATCTGAAGTTACAGTAGAGT
1 TATCTCCCTGAAGTTACAGTGGAGT
93109517 AGAAGATCTT
Statistics
Matches: 178, Mismatches: 56, Indels: 20
0.70 0.22 0.08
Matches are distributed among these distances:
41 26 0.15
42 2 0.01
43 8 0.04
44 104 0.58
45 8 0.04
46 30 0.17
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (44 bp):
TATCTCCCTGAAGTTACAGTGGAGTGGATTAAAATAAAAGATCT
Found at i:93109568 original size:40 final size:40
Alignment explanation
Indices: 93109523--93109754 Score: 227
Period size: 40 Copynumber: 5.7 Consensus size: 40
93109513 GAGTAGAAGA
93109523 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAG
* * * *
93109563 TCTTATCTCCCTAAGCAGTAGCGGAGCAGA-CGAAAGAAACATA-
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATC---A-CATCA-AG
* *
93109606 TCTTTTCTCCCTAAGTAGTAGTGGAGTAGATCACATCAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAG
* * * * **
93109646 TTTTATCTCCCTAAACAGTAGTGGAGCAGA-CGAAAGAAACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-ACA-TCA-AG
*
93109688 ATCTTATCTCCCTAAGCAGTAGTAGAGTAGATCACATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAG
* *
93109729 TTTTATCTCCCTAAGCAATAGTGGAG
1 TCTTATCTCCCTAAGCAGTAGTGGAG
93109755 CAGGTCAAAG
Statistics
Matches: 152, Mismatches: 28, Indels: 24
0.75 0.14 0.12
Matches are distributed among these distances:
39 3 0.02
40 81 0.53
41 4 0.03
42 4 0.03
43 57 0.38
44 3 0.02
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAG
Found at i:93109665 original size:83 final size:83
Alignment explanation
Indices: 93109520--93110322 Score: 416
Period size: 87 Copynumber: 9.3 Consensus size: 83
93109510 GTAGAGTAGA
* *
93109520 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAGTTTTATCTCCCTAAGCAGTAGT
93109585 GGAGCAGACGAAAGAAAC
66 GGAGCAGACGAAAGAAAC
* * * *
93109603 ATATCTTTTCTCCCTAAGTAGTAGTGGAGTAGATCACATCAAGTTTTATCTCCCTAAACAGTAGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAGTTTTATCTCCCTAAGCAGTAGT
93109668 GGAGCAGACGAAAGAAAC
66 GGAGCAGACGAAAGAAAC
* *
93109686 AGATCTTATCTCCCTAAGCAGTAGTAGAGTAGATCACATCAAGTTTTATCTCCCTAAGCAATAGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAGTTTTATCTCCCTAAGCAGTAGT
* ***
93109751 GGAGCAGGTC-AAAGATGGT
66 GGAGCA-GACGAAAGA-AAC
* * * * ** * * ** *
93109770 TGATCTTACCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAAATCTTATCTCTTTAAGCAA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGA-T---CACATCAAGTTTTATCTCCCTAAGCAG
* *** * *
93109835 TAGTGAAGCAGATTTAAGCCACC
62 TAGTGGAGCAGACGAAAG-AAAC
* * ** * * ** *
93109858 AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAAATCTTATCTCTTTAAGCAA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGA-T---CACATCAAGTTTTATCTCCCTAAGCAG
* *** * *
93109922 TAGTGAAGCAGATTTAAGCCACC
62 TAGTGGAGCAGACGAAAG-AAAC
* * * ** ** **
93109945 AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGATCCTATCTTTCTAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC--ACAT-CAAG-TTTTATCTCCCTAAGCAG
* ***
93110009 TAGTGGAGCAGGTC-AAAGATGGT
62 TAGTGGAGCA-GACGAAAGA-AAC
* * * ** *
93110032 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGGTGGTAGATCTTATCTCCCTAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACA--T-CAAG-TTTTATCTCCCTAAGCAG
**
93110097 TAGTGGAGCAGATCG-AAGACGGC
62 TAGTGGAGCAGA-CGAAAGA-AAC
* * ** * * *
93110120 -GAATCTTATCTTCCTAAGCAGTAGTGAAACAGATTTAAGCCA-CCAGTTCTATCTCCCTAAGCA
1 AG-ATCTTATCTCCCTAAGCAGTAGTGGAGTAGA--TCA--CATCAAGTTTTATCTCCCTAAGCA
* *** ***
93110183 GTAATGGAGCAGGTTAAAGATGGT
61 GTAGTGGAGCAGACGAAAGA-AAC
* * * * *
93110207 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCAAATCTTATATTCCTAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC--ACAT--CAAGTTTTATCTCCCTAAGCAG
* *** * *
93110272 TAGTGAAGCAGATTTAAGCCACC
62 TAGTGGAGCAGACGAAAG-AAAC
*
93110295 AG-TCCTATCTCCCTAAGCAGTAGTGGAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAG
93110323 CAGACAGAAT
Statistics
Matches: 587, Mismatches: 101, Indels: 60
0.78 0.14 0.08
Matches are distributed among these distances:
83 147 0.25
84 31 0.05
85 4 0.01
86 4 0.01
87 231 0.39
88 167 0.28
90 2 0.00
92 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (83 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACATCAAGTTTTATCTCCCTAAGCAGTAGT
GGAGCAGACGAAAGAAAC
Found at i:93109798 original size:44 final size:44
Alignment explanation
Indices: 93109520--93110326 Score: 594
Period size: 44 Copynumber: 18.8 Consensus size: 44
93109510 GTAGAGTAGA
* * * *
93109520 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCACA-TC--A
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
* **
93109561 AG-TCTTATCTCCCTAAGCAGTAGCGGAGCAGA-CGAAAGA-AAC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-AAAGACGGC
* * * * * * *
93109603 ATATCTTTTCTCCCTAAGTAGTAGTGGAGTAGATCACA-TC--A
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
* * **
93109644 AG-TTTTATCTCCCTAAACAGTAGTGGAGCAGA-CGAAAGA-AAC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-AAAGACGGC
* * * * *
93109686 AGATCTTATCTCCCTAAGCAGTAGTAGAGTAGATCACA-TC--A
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
* * * * *
93109727 AG-TTTTATCTCCCTAAGCAATAGTGGAGCAGGTCAAAGATGGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
* * *
93109770 TGATCTTACCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
* ** * * ** * **
93109814 AAATCTTATCTCTTTAAGCAATAGTGAAGCAGATTTAAGCCACC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
*
93109858 AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
* ** * * ** * **
93109901 AAATCTTATCTCTTTAAGCAATAGTGAAGCAGATTTAAGCCACC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
* * * *
93109945 AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
* ** * * *
93109988 AGATCCTATCTTTCTAAGCAGTAGTGGAGCAGGTCAAAGATGGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
* ** *
93110032 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGGTGGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
*
93110076 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
* * * ** * **
93110120 -GAATCTTATCTTCCTAAGCAGTAGTGAAACAGATTTAAGCCACC
1 AG-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
* * * * * *
93110164 AGTTC-TATCTCCCTAAGCAGTAATGGAGCAGGTTAAAGATGGT
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
* * *
93110207 AGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
* * * * ** * **
93110251 AAATCTTATATTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
*
93110295 AG-TCCTATCTCCCTAAGCAGTAGTGGAGCAGA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
93110327 CAGAATAAAC
Statistics
Matches: 599, Mismatches: 144, Indels: 44
0.76 0.18 0.06
Matches are distributed among these distances:
39 2 0.00
40 86 0.14
41 5 0.01
42 3 0.01
43 180 0.30
44 322 0.54
45 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (44 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGC
Found at i:93109884 original size:87 final size:87
Alignment explanation
Indices: 93109773--93110326 Score: 509
Period size: 87 Copynumber: 6.3 Consensus size: 87
93109763 AGATGGTTGA
* * * *
93109773 TCTTACCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAAATCTTATCTCTTTAAGCAATAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTCTCTAAGCAGTAG
93109838 TGAAGCAGATTTAAGCCACCAG
66 TGAAGCAGATTTAAGCCACCAG
* * *
93109860 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGCAAATCTTATCTCTTTAAGCAATAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTCTCTAAGCAGTAG
93109925 TGAAGCAGATTTAAGCCACCAG
66 TGAAGCAGATTTAAGCCACCAG
* * * * * * *
93109947 TCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGATCCTATCTTTCTAAGCAGTAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTCTCTAAGCAGTAG
* * ** *****
93110012 TGGAGCAGGTCAAAGATGGTAG
66 TGAAGCAGATTTAAGCCACCAG
* ** * * *
93110034 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGGTGGTAGATCTTATCTCCCTAAGCAGTA
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTCTCTAAGCAGTA
* ** ** * *
93110099 GTGGAGCAGATCGAAGACGGCGAA
65 GTGAAGCAGATTTAAG-CCACCAG
* * * ** * ** ** * *
93110123 TCTTATCTTCCTAAGCAGTAGTGAAACAGATTTAAGCCACCAGTTC-TATCTCCCTAAGCAGTAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTCTCTAAGCAGTAG
* * * *****
93110187 TGGAGCAGGTTAAAGATGGTAG
66 TGAAGCAGATTTAAGCCACCAG
* * * *
93110209 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCAAATCTTATAT-TCCTAAGCAGT
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTCT-CTAAGCAGT
93110273 AGTGAAGCAGATTTAAGCCACCAG
64 AGTGAAGCAGATTTAAGCCACCAG
*
93110297 TCCTATCTCCCTAAGCAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
93110327 CAGAATAAAC
Statistics
Matches: 384, Mismatches: 78, Indels: 10
0.81 0.17 0.02
Matches are distributed among these distances:
86 2 0.01
87 245 0.64
88 135 0.35
89 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (87 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTCTCTAAGCAGTAG
TGAAGCAGATTTAAGCCACCAG
Found at i:93110230 original size:131 final size:131
Alignment explanation
Indices: 93109947--93110325 Score: 533
Period size: 131 Copynumber: 2.9 Consensus size: 131
93109937 AAGCCACCAG
* * * * *
93109947 TCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGATCCTATCTTTCTAAGCAGTAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTCCTAAGCAGTAG
* * ** ***** * *
93110012 TGGAGCAGGTCAAAGATGGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGGTGGTA
66 TGAAGCAGATTTAAGCCACCAGTTC-TATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTA
93110077 GA
130 GA
* *
93110079 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGTAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTCCTAAGCAGTAG
* * *
93110144 TGAAACAGATTTAAGCCACCAGTTCTATCTCCCTAAGCAGTAATGGAGCAGGTTAAAGATGGTAG
66 TGAAGCAGATTTAAGCCACCAGTTCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAG
93110209 A
131 A
* *
93110210 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGCAAATCTTATATTCCTAAGCAGTAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTCCTAAGCAGTAG
*
93110275 TGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGTAGTGGAGCAG
66 TGAAGCAGATTTAAGCCACCAGTTCTATCTCCCTAAGCAGTAGTGGAGCAG
93110326 ACAGAATAAA
Statistics
Matches: 219, Mismatches: 28, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
131 147 0.67
132 72 0.33
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (131 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTCCTAAGCAGTAG
TGAAGCAGATTTAAGCCACCAGTTCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAG
A
Found at i:93112582 original size:44 final size:44
Alignment explanation
Indices: 93112532--93112618 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 44
93112522 TATTTATTTA
93112532 TTTCATTTTTGATGATTGTTCATATTATTCATATTTACATTATG
1 TTTCATTTTTGATGATTGTTCATATTATTCATATTTACATTATG
*
93112576 TTTCATTTTTTATGATTGTTCATATTATTCATATTTACATTAT
1 TTTCATTTTTGATGATTGTTCATATTATTCATATTTACATTAT
93112619 CATATTTATA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.25, C:0.09, G:0.07, T:0.59
Consensus pattern (44 bp):
TTTCATTTTTGATGATTGTTCATATTATTCATATTTACATTATG
Found at i:93114973 original size:423 final size:423
Alignment explanation
Indices: 93114187--93115032 Score: 1638
Period size: 423 Copynumber: 2.0 Consensus size: 423
93114177 TTTGGAGCTT
93114187 TTTTTTCCATTATGCCTTTGGTTTGATGGTTGTTTGGCAATTGCTAGCTATTTGTAAGTTAGTGA
1 TTTTTTCCATTATGCCTTTGGTTTGATGGTTGTTTGGCAATTGCTAGCTATTTGTAAGTTAGTGA
93114252 CATTAGTATCTTTTAGTTGCCTTTTTATGTACTGACATTAGTATGATGTTATTAGGCTAAGGGGA
66 CATTAGTATCTTTTAGTTGCCTTTTTATGTACTGACATTAGTATGATGTTATTAGGCTAAGGGGA
93114317 CATTAGTATTGGAGCATAAGGATGAGCGCGATTTGGGGCTCCATTTGCTGCAATTTGCTGAGGTA
131 CATTAGTATTGGAGCATAAGGATGAGCGCGATTTGGGGCTCCATTTGCTGCAATTTGCTGAGGTA
93114382 AGAACTTAAGGAAAAAAAGAACAATCTATTTATTGTTTCTTGACTCAGGCTCGGTCTGACAAATT
196 AGAACTTAAGGAAAAAAAGAACAATCTATTTATTGTTTCTTGACTCAGGCTCGGTCTGACAAATT
93114447 TTTATCTTGCTTTCAGGTTGTTGAGGAGGCTTGTACCAATTTGTTACCGAATGTTATGGGTGACT
261 TTTATCTTGCTTTCAGGTTGTTGAGGAGGCTTGTACCAATTTGTTACCGAATGTTATGGGTGACT
*
93114512 ACCCCAATAATTTATCCGAAATCTTCTCCAAATTTTACAACAGCCCTGAGTGCAAGGTATGATCA
326 ACCCCAATAATTTATCCGAAATCTTCTCCAAATTTTACAACAACCCTGAGTGCAAGGTATGATCA
93114577 ATGATCTAATTATATGGTTTCTTGGTAAAATAA
391 ATGATCTAATTATATGGTTTCTTGGTAAAATAA
93114610 TTTTTTCCATTATGCCTTTGGTTTGATGGTTGTTTGGCAATTGCTAGCTATTTGTAAGTTAGTGA
1 TTTTTTCCATTATGCCTTTGGTTTGATGGTTGTTTGGCAATTGCTAGCTATTTGTAAGTTAGTGA
93114675 CATTAGTATCTTTTAGTTGCCTTTTTATGTACTGACATTAGTATGATGTTATTAGGCTAAGGGGA
66 CATTAGTATCTTTTAGTTGCCTTTTTATGTACTGACATTAGTATGATGTTATTAGGCTAAGGGGA
93114740 CATTAGTATTGGAGCATAAGGATGAGCGCGATTTGGGGCTCCATTTGCTGCAATTTGCTGAGGTA
131 CATTAGTATTGGAGCATAAGGATGAGCGCGATTTGGGGCTCCATTTGCTGCAATTTGCTGAGGTA
93114805 AGAACTTAAGGAAAAAAAGAACAATCTATTTATTGTTTCTTGACTCAGGCTCGGTCTGACAAATT
196 AGAACTTAAGGAAAAAAAGAACAATCTATTTATTGTTTCTTGACTCAGGCTCGGTCTGACAAATT
*
93114870 TTTATCTTGCTTTCAGGTTGTTGAGGAGGCTTGTACCAATTTGTTACCGAATGTTATGTGTGACT
261 TTTATCTTGCTTTCAGGTTGTTGAGGAGGCTTGTACCAATTTGTTACCGAATGTTATGGGTGACT
* * * *
93114935 ACCTCTATAATTTATCCGAAATCTTCTCCAAATTTTACAGCAATCCTGAGTGCAAGGTATGATCA
326 ACCCCAATAATTTATCCGAAATCTTCTCCAAATTTTACAACAACCCTGAGTGCAAGGTATGATCA
93115000 ATGATCTAATTATATGGTTTCTTGGTAAAATAA
391 ATGATCTAATTATATGGTTTCTTGGTAAAATAA
93115033 ACCTTGTTAT
Statistics
Matches: 417, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
423 417 1.00
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.38
Consensus pattern (423 bp):
TTTTTTCCATTATGCCTTTGGTTTGATGGTTGTTTGGCAATTGCTAGCTATTTGTAAGTTAGTGA
CATTAGTATCTTTTAGTTGCCTTTTTATGTACTGACATTAGTATGATGTTATTAGGCTAAGGGGA
CATTAGTATTGGAGCATAAGGATGAGCGCGATTTGGGGCTCCATTTGCTGCAATTTGCTGAGGTA
AGAACTTAAGGAAAAAAAGAACAATCTATTTATTGTTTCTTGACTCAGGCTCGGTCTGACAAATT
TTTATCTTGCTTTCAGGTTGTTGAGGAGGCTTGTACCAATTTGTTACCGAATGTTATGGGTGACT
ACCCCAATAATTTATCCGAAATCTTCTCCAAATTTTACAACAACCCTGAGTGCAAGGTATGATCA
ATGATCTAATTATATGGTTTCTTGGTAAAATAA
Found at i:93116045 original size:20 final size:20
Alignment explanation
Indices: 93116020--93116059 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
93116010 AAATATTTTC
*
93116020 AGTAAATCATTTTCTAGAAA
1 AGTAAATCATTTTCCAGAAA
93116040 AGTAAATCATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
93116060 TCATTTTACG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (20 bp):
AGTAAATCATTTTCCAGAAA
Found at i:93116594 original size:43 final size:43
Alignment explanation
Indices: 93116546--93116631 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
93116536 TGGTGAGATC
* *
93116546 GACAGTGA-GAAGTGAAAGGGAAGGGAGC-AGTGGTGGGGGTTGG
1 GACAGTGATG-AGTGAAAGGGAAGGCAGCGA-CGGTGGGGGTTGG
*
93116589 GACAGTGATGAGTGAGAGGGAAGGCAGCGACGGTGGGGGTTGG
1 GACAGTGATGAGTGAAAGGGAAGGCAGCGACGGTGGGGGTTGG
93116632 ACAAAATAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 36 0.95
44 2 0.05
ACGTcount: A:0.26, C:0.07, G:0.53, T:0.14
Consensus pattern (43 bp):
GACAGTGATGAGTGAAAGGGAAGGCAGCGACGGTGGGGGTTGG
Found at i:93122860 original size:2 final size:2
Alignment explanation
Indices: 93122853--93122887 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
93122843 CCTGTCTTAA
93122853 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
93122888 TTTATTCGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:93123774 original size:13 final size:13
Alignment explanation
Indices: 93123758--93123783 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
93123748 GCGATATGTT
93123758 ATGTAAATTTTTA
1 ATGTAAATTTTTA
93123771 ATGTAAATTTTTA
1 ATGTAAATTTTTA
93123784 TATCGATGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
ATGTAAATTTTTA
Found at i:93130334 original size:2 final size:2
Alignment explanation
Indices: 93130327--93130360 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
93130317 CTATTTGTAT
93130327 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
93130361 ATCTTACATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:93147384 original size:3 final size:3
Alignment explanation
Indices: 93147376--93147403 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
93147366 ATTATGCCAA
93147376 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
93147404 GACTATAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:93147607 original size:19 final size:19
Alignment explanation
Indices: 93147583--93147636 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
93147573 AATCTTCAAG
93147583 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
93147602 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
93147621 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
93147637 AAATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:93147627 original size:38 final size:40
Alignment explanation
Indices: 93147583--93147659 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
93147573 AATCTTCAAG
93147583 GATATGCAATCTTAG-ATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAGAATATGATTATGTAATCTTAGATAT
*
93147621 GATATGCAATCTTAGAAAATATGATTTTGTAATCTTAGA
1 GATATGCAATCTTAG--AATATGATTATGTAATCTTAGA
93147660 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 15 0.44
41 6 0.18
42 13 0.38
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.39
Consensus pattern (40 bp):
GATATGCAATCTTAGAATATGATTATGTAATCTTAGATAT
Found at i:93148144 original size:17 final size:17
Alignment explanation
Indices: 93148122--93148156 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
93148112 TTTATATACA
* *
93148122 TATATATATTTACATTT
1 TATATACATATACATTT
93148139 TATATACATATACATTT
1 TATATACATATACATTT
93148156 T
1 T
93148157 TTATTTCCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.00, T:0.54
Consensus pattern (17 bp):
TATATACATATACATTT
Found at i:93148352 original size:30 final size:31
Alignment explanation
Indices: 93148318--93148375 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
93148308 TATTTGTTTT
*
93148318 TATATATATGTA-ATTATCTTTTTTATAATC
1 TATATATATGTAGATAATCTTTTTTATAATC
*
93148348 TATATATATGTAGATAATTTTTTTTATA
1 TATATATATGTAGATAATCTTTTTTATA
93148376 TATGTACATG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.57
Consensus pattern (31 bp):
TATATATATGTAGATAATCTTTTTTATAATC
Found at i:93149755 original size:7 final size:7
Alignment explanation
Indices: 93149745--93149770 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
93149735 ATTTACACCT
93149745 TAAACCC
1 TAAACCC
93149752 TAAACCC
1 TAAACCC
93149759 TAAACCC
1 TAAACCC
93149766 TAAAC
1 TAAAC
93149771 TTTTTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAACCC
Found at i:93152709 original size:9 final size:9
Alignment explanation
Indices: 93152694--93152733 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
93152684 GAAACCCAGT
93152694 ATTT-TTTA
1 ATTTCTTTA
*
93152702 ATTTTTTTA
1 ATTTCTTTA
93152711 ATTTCTTTA
1 ATTTCTTTA
93152720 ATTTCTTTA
1 ATTTCTTTA
93152729 ATTTC
1 ATTTC
93152734 ATCAAACACT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
8 4 0.13
9 26 0.87
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (9 bp):
ATTTCTTTA
Found at i:93157251 original size:7 final size:7
Alignment explanation
Indices: 93157241--93157268 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
93157231 TTTCAGTGTT
93157241 CATTTCC
1 CATTTCC
93157248 CATTTCC
1 CATTTCC
93157255 CATTTCC
1 CATTTCC
93157262 CATTTCC
1 CATTTCC
93157269 TACCACCTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.43, G:0.00, T:0.43
Consensus pattern (7 bp):
CATTTCC
Found at i:93170163 original size:22 final size:23
Alignment explanation
Indices: 93170117--93170163 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
93170107 TCTTCCTTTA
*
93170117 TTTTTTTCAACAATTTCATTTAT
1 TTTTTTTCAACAATTTCATTAAT
93170140 TTTTCTTTCAAC-ATTT-ATTAAT
1 TTTT-TTTCAACAATTTCATTAAT
93170162 TT
1 TT
93170164 ATTGGGGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 8 0.36
24 7 0.32
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.62
Consensus pattern (23 bp):
TTTTTTTCAACAATTTCATTAAT
Found at i:93175415 original size:22 final size:21
Alignment explanation
Indices: 93175376--93175416 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
93175366 GAGTGGACAA
*
93175376 TTTAAAAAAAAGCGAAAACCC
1 TTTAAAAAAAAGCAAAAACCC
*
93175397 TTTAAAAATAAAGTAAAAAC
1 TTTAAAAA-AAAGCAAAAAC
93175417 ACAGAGGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.61, C:0.12, G:0.07, T:0.20
Consensus pattern (21 bp):
TTTAAAAAAAAGCAAAAACCC
Found at i:93177586 original size:34 final size:34
Alignment explanation
Indices: 93177543--93177619 Score: 145
Period size: 34 Copynumber: 2.3 Consensus size: 34
93177533 AAAACAGTGA
93177543 AAAAAAAAATAGCAACAAAATAATTAAAAAAAAC
1 AAAAAAAAATAGCAACAAAATAATTAAAAAAAAC
93177577 AAAAAAAAATAGCAACAAAATAATTAAAAAAAAC
1 AAAAAAAAATAGCAACAAAATAATTAAAAAAAAC
*
93177611 AACAAAAAA
1 AAAAAAAAA
93177620 GCAAGAAAGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.78, C:0.09, G:0.03, T:0.10
Consensus pattern (34 bp):
AAAAAAAAATAGCAACAAAATAATTAAAAAAAAC
Found at i:93181714 original size:19 final size:20
Alignment explanation
Indices: 93181682--93181745 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 20
93181672 ATCTTTGAAT
**
93181682 TCATTTCAAAATTT-ACATC
1 TCATTTCATCATTTCACATC
* *
93181701 TCATTTCATCATTTCATATT
1 TCATTTCATCATTTCACATC
*
93181721 TCATTTC-TCATTTCATAT-
1 TCATTTCATCATTTCACATC
93181739 TCATTTC
1 TCATTTC
93181746 TCAACTTTGC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
18 7 0.17
19 23 0.57
20 10 0.25
ACGTcount: A:0.27, C:0.22, G:0.00, T:0.52
Consensus pattern (20 bp):
TCATTTCATCATTTCACATC
Found at i:93183993 original size:13 final size:13
Alignment explanation
Indices: 93183975--93184001 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
93183965 CTATCATTTT
93183975 AAATTGTATGATA
1 AAATTGTATGATA
93183988 AAATTGTATGATA
1 AAATTGTATGATA
93184001 A
1 A
93184002 TAATACTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.37
Consensus pattern (13 bp):
AAATTGTATGATA
Found at i:93185147 original size:20 final size:20
Alignment explanation
Indices: 93185122--93185164 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
93185112 ATTTTAAGAG
*
93185122 ATTCTCGTACAAGACTTTTT
1 ATTCTCATACAAGACTTTTT
* *
93185142 ATTCTCATACGAGATTTTTT
1 ATTCTCATACAAGACTTTTT
93185162 ATT
1 ATT
93185165 GGGTCATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.26, C:0.16, G:0.09, T:0.49
Consensus pattern (20 bp):
ATTCTCATACAAGACTTTTT
Found at i:93188309 original size:72 final size:73
Alignment explanation
Indices: 93188189--93188339 Score: 268
Period size: 72 Copynumber: 2.1 Consensus size: 73
93188179 CGACAAAGGC
*
93188189 ATTGGCGGAGAGGTAATGTCTGATTAAAGAACGCATGCAAAAAGAACCATTAAAACTTCTTTT-A
1 ATTGGCGGAGAGGTAATGTCTGATTAAAGAACGCATGCAAAAAAAACCATTAAAACTTCTTTTAA
* *
93188253 TTGGCTCT
66 CTAGCTCT
93188261 ATTGGCGGAGAGGTAATGTCTGATTAAAGAACGCATGCAAAAAAAACCATTAAAACTTCTTTTAA
1 ATTGGCGGAGAGGTAATGTCTGATTAAAGAACGCATGCAAAAAAAACCATTAAAACTTCTTTTAA
93188326 CTAGCTCT
66 CTAGCTCT
93188334 ATTGGC
1 ATTGGC
93188340 TTATCCATGT
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
72 62 0.83
73 13 0.17
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (73 bp):
ATTGGCGGAGAGGTAATGTCTGATTAAAGAACGCATGCAAAAAAAACCATTAAAACTTCTTTTAA
CTAGCTCT
Found at i:93190207 original size:24 final size:25
Alignment explanation
Indices: 93190180--93190236 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
93190170 GAAGGATGAT
*
93190180 AAGGCTGAGACAAA-A-AAGGAAGTG
1 AAGGCTGAGA-AAAGAGAAGGAAGCG
93190204 AAGGCTGA-AAAAGAGAAGGAAGCG
1 AAGGCTGAGAAAAGAGAAGGAAGCG
93190228 AAGGCTGAG
1 AAGGCTGAG
93190237 TGAAAATGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 3 0.10
23 2 0.07
24 24 0.83
ACGTcount: A:0.47, C:0.09, G:0.37, T:0.07
Consensus pattern (25 bp):
AAGGCTGAGAAAAGAGAAGGAAGCG
Found at i:93193737 original size:20 final size:20
Alignment explanation
Indices: 93193709--93193757 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
93193699 ATAAATCTGG
93193709 ATAAAAATTGATG-TAATGGA
1 ATAAAAATT-ATGATAATGGA
* *
93193729 ATAACAATTATGATAATGTA
1 ATAAAAATTATGATAATGGA
93193749 AGTAAAAAT
1 A-TAAAAAT
93193758 AATATGGGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 3 0.12
20 15 0.62
21 6 0.25
ACGTcount: A:0.53, C:0.02, G:0.14, T:0.31
Consensus pattern (20 bp):
ATAAAAATTATGATAATGGA
Found at i:93194055 original size:11 final size:12
Alignment explanation
Indices: 93194033--93194087 Score: 58
Period size: 12 Copynumber: 4.6 Consensus size: 12
93194023 TAATGTATAT
*
93194033 ATATATTTAAAA
1 ATATATATAAAA
93194045 ATATAT-TAAAA
1 ATATATATAAAA
*
93194056 ATATATGTATAAA
1 ATATATATA-AAA
*
93194069 GTATATATAAAA
1 ATATATATAAAA
*
93194081 AAATATA
1 ATATATA
93194088 AGTACATACA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
11 11 0.30
12 16 0.43
13 10 0.27
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (12 bp):
ATATATATAAAA
Found at i:93194068 original size:25 final size:27
Alignment explanation
Indices: 93194031--93194087 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 27
93194021 GGTAATGTAT
* *
93194031 ATATATATTTAAA-AATATAT-TAAAA
1 ATATATATATAAAGAATATATAAAAAA
* *
93194056 ATATATGTATAAAGTATATATAAAAAA
1 ATATATATATAAAGAATATATAAAAAA
93194083 ATATA
1 ATATA
93194088 AGTACATACA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 11 0.42
26 6 0.23
27 9 0.35
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (27 bp):
ATATATATATAAAGAATATATAAAAAA
Found at i:93194174 original size:3 final size:3
Alignment explanation
Indices: 93194166--93194194 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
93194156 TAAATGGGTA
93194166 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
93194195 AACTAATTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:93197821 original size:48 final size:48
Alignment explanation
Indices: 93197759--93197854 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
93197749 AATTTAAAGA
93197759 ATATCTATAATTTCAATTACAACAATCACAAGATATTATTCACTAAAT
1 ATATCTATAATTTCAATTACAACAATCACAAGATATTATTCACTAAAT
* *
93197807 ATATCTGTAGTTTCAATTACAACAATCACAAGATATTATTCACTAAAT
1 ATATCTATAATTTCAATTACAACAATCACAAGATATTATTCACTAAAT
93197855 CCTTAGTCCA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.44, C:0.17, G:0.04, T:0.35
Consensus pattern (48 bp):
ATATCTATAATTTCAATTACAACAATCACAAGATATTATTCACTAAAT
Found at i:93198779 original size:5 final size:5
Alignment explanation
Indices: 93198765--93198815 Score: 77
Period size: 5 Copynumber: 10.2 Consensus size: 5
93198755 TTTATTTATT
*
93198765 TAAT- TAATA TAATA TAATA TAATA TAATA TAATA TAATA CTAAAA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA -TAATA TAATA
93198815 T
1 T
93198816 TATTTATAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
4 4 0.09
5 35 0.81
6 4 0.09
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (5 bp):
TAATA
Found at i:93201268 original size:72 final size:72
Alignment explanation
Indices: 93201189--93201331 Score: 268
Period size: 72 Copynumber: 2.0 Consensus size: 72
93201179 AAAAGAATGT
93201189 CCAAACATTTAACCAATTTAAAAATCAATTAAAATTCAAAATGCTTAAAAATAAGGTGAATATTT
1 CCAAACATTTAACCAATTTAAAAATCAATTAAAATTCAAAATGCTTAAAAATAAGGTGAATATTT
93201254 AGTGGCC
66 AGTGGCC
* *
93201261 CCAAACATTTAACTAATTTAAAAATCAATTAAAATTCAAAATGGTTAAAAATAAGGTGAATATTT
1 CCAAACATTTAACCAATTTAAAAATCAATTAAAATTCAAAATGCTTAAAAATAAGGTGAATATTT
93201326 AGTGGC
66 AGTGGC
93201332 GTTTTTAACT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.30
Consensus pattern (72 bp):
CCAAACATTTAACCAATTTAAAAATCAATTAAAATTCAAAATGCTTAAAAATAAGGTGAATATTT
AGTGGCC
Found at i:93201604 original size:20 final size:20
Alignment explanation
Indices: 93201579--93201618 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
93201569 AGTCTTTCTG
93201579 CGATTTCCCCTCATCCTTTC
1 CGATTTCCCCTCATCCTTTC
93201599 CGATTTCCCCTCATCCTTTC
1 CGATTTCCCCTCATCCTTTC
93201619 TTCATCTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.45, G:0.05, T:0.40
Consensus pattern (20 bp):
CGATTTCCCCTCATCCTTTC
Found at i:93203287 original size:17 final size:17
Alignment explanation
Indices: 93203265--93203297 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
93203255 TTATTTTCTA
93203265 TATAAGTTTTCTAAATT
1 TATAAGTTTTCTAAATT
*
93203282 TATAAGTTTTGTAAAT
1 TATAAGTTTTCTAAAT
93203298 AATTATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (17 bp):
TATAAGTTTTCTAAATT
Found at i:93203343 original size:15 final size:16
Alignment explanation
Indices: 93203306--93203344 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
93203296 ATAATTATTC
*
93203306 TAAATTTATTAGTATA
1 TAAATTTAGTAGTATA
*
93203322 AAAATTTAGTAGTAT-
1 TAAATTTAGTAGTATA
93203337 TAAATTTA
1 TAAATTTA
93203345 TAAGTTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (16 bp):
TAAATTTAGTAGTATA
Found at i:93203344 original size:61 final size:61
Alignment explanation
Indices: 93203276--93203425 Score: 178
Period size: 61 Copynumber: 2.5 Consensus size: 61
93203266 ATAAGTTTTC
93203276 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGT-ATAAAAATTTAGT-AGTAT
1 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAAT-AAAATTTA-TAAGTAT
* * * * * *
93203337 TAAATTTATAAGTTTTCTAAAAAAGTGTTCTAGATTTATTATTAATAAAATTTATAAGTAT
1 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAATAAAATTTATAAGTAT
* * * *
93203398 CAATTTTACACGTTTTGTAAATAATTAT
1 TAAATTTATAAGTTTTGTAAATAATTAT
93203426 ATATTTTTTT
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
60 1 0.01
61 70 0.96
62 2 0.03
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (61 bp):
TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAATAAAATTTATAAGTAT
Found at i:93203661 original size:8 final size:7
Alignment explanation
Indices: 93203648--93203693 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
93203638 TAACGTATAT
93203648 ATAATAAC
1 ATAAT-AC
93203656 ATAATA-
1 ATAATAC
*
93203662 A-ATTAC
1 ATAATAC
93203668 ATAATAC
1 ATAATAC
93203675 ATAATAAC
1 ATAAT-AC
93203683 ATAATAC
1 ATAATAC
93203690 ATAA
1 ATAA
93203694 CTTATATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 3 0.09
6 2 0.06
7 16 0.48
8 12 0.36
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (7 bp):
ATAATAC
Found at i:93203681 original size:95 final size:95
Alignment explanation
Indices: 93203569--93203832 Score: 395
Period size: 95 Copynumber: 2.8 Consensus size: 95
93203559 AATCATTTGC
* * * *
93203569 TTACTTAATACATAATAACACAATGCATAA-TTGGTATATAAGCTTGCATAACTTACATAATAAC
1 TTACATAATACATAATAACATAATACATAACTT-ATATATAAGCTTGCATAACTTACATAATAAC
93203633 TTCCATAACGTATATATAATAACATAATAAA
65 TTCCATAACGTATATATAATAACATAATAAA
*
93203664 TTACATAATACATAATAACATAATACATAACTTATATATAAGCTTGTATAACTTACATAATAACT
1 TTACATAATACATAATAACATAATACATAACTTATATATAAGCTTGCATAACTTACATAATAACT
* * *** *
93203729 TTCATAACTTATATATAATCTGATAATACA
66 TCCATAACGTATATATAATAACATAATAAA
*
93203759 TTACATAATACATAATAACATAATACATAACTTATATTATAATCTTGCATAACTTACATAATAAC
1 TTACATAATACATAATAACATAATACATAACTTATA-TATAAGCTTGCATAACTTACATAATAAC
93203824 TTCCATAAC
65 TTCCATAAC
93203833 TTAATACACC
Statistics
Matches: 153, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
95 117 0.76
96 36 0.24
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (95 bp):
TTACATAATACATAATAACATAATACATAACTTATATATAAGCTTGCATAACTTACATAATAACT
TCCATAACGTATATATAATAACATAATAAA
Found at i:93203686 original size:15 final size:15
Alignment explanation
Indices: 93203648--93203693 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
93203638 TAACGTATAT
93203648 ATAATAACATAAT--
1 ATAATAACATAATAC
*
93203661 A-AATTACATAATAC
1 ATAATAACATAATAC
93203675 ATAATAACATAATAC
1 ATAATAACATAATAC
93203690 ATAA
1 ATAA
93203694 CTTATATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 10 0.36
13 1 0.04
14 1 0.04
15 16 0.57
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAATAACATAATAC
Found at i:93203715 original size:21 final size:20
Alignment explanation
Indices: 93203689--93203746 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 20
93203679 TAACATAATA
93203689 CATAACTTATATATAAGCTTGT
1 CATAACTTATATATAA-CTT-T
*
93203711 -ATAACTTACATAATAACTTT
1 CATAACTTATAT-ATAACTTT
93203731 CATAACTTATATATAA
1 CATAACTTATATATAA
93203747 TCTGATAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 5 0.16
21 23 0.72
22 4 0.12
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.40
Consensus pattern (20 bp):
CATAACTTATATATAACTTT
Found at i:93203768 original size:12 final size:14
Alignment explanation
Indices: 93203751--93203787 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
93203741 ATATAATCTG
93203751 ATAATACAT-T-AC
1 ATAATACATATAAC
93203763 ATAATACATAATAAC
1 ATAATACAT-ATAAC
93203778 ATAATACATA
1 ATAATACATA
93203788 ACTTATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 9 0.41
14 2 0.09
15 11 0.50
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAATACATATAAC
Found at i:93203781 original size:8 final size:7
Alignment explanation
Indices: 93203751--93203788 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
93203741 ATATAATCTG
93203751 ATAATAC
1 ATAATAC
93203758 AT--TAC
1 ATAATAC
93203763 ATAATAC
1 ATAATAC
93203770 ATAATAAC
1 ATAAT-AC
93203778 ATAATAC
1 ATAATAC
93203785 ATAA
1 ATAA
93203789 CTTATATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 5 0.18
7 16 0.57
8 7 0.25
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (7 bp):
ATAATAC
Found at i:93203800 original size:27 final size:27
Alignment explanation
Indices: 93203731--93203801 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 27
93203721 TAATAACTTT
***
93203731 CATAACTTATA-TATAATCTGATAATA
1 CATAACTTATATTATAATAACATAATA
* * *
93203757 CATTACATA-ATACATAATAACATAATA
1 CATAACTTATAT-TATAATAACATAATA
93203784 CATAACTTATATTATAAT
1 CATAACTTATATTATAAT
93203802 CTTGCATAAC
Statistics
Matches: 33, Mismatches: 9, Indels: 5
0.70 0.19 0.11
Matches are distributed among these distances:
25 1 0.03
26 7 0.21
27 23 0.70
28 2 0.06
ACGTcount: A:0.49, C:0.13, G:0.01, T:0.37
Consensus pattern (27 bp):
CATAACTTATATTATAATAACATAATA
Found at i:93203809 original size:22 final size:21
Alignment explanation
Indices: 93203784--93203835 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
93203774 TAACATAATA
* * *
93203784 CATAACTTATATTATAATCTTG
1 CATAACTTACATAATAA-CTTC
93203806 CATAACTTACATAATAACTTC
1 CATAACTTACATAATAACTTC
93203827 CATAACTTA
1 CATAACTTA
93203836 ATACACCACT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.38
Consensus pattern (21 bp):
CATAACTTACATAATAACTTC
Found at i:93209048 original size:20 final size:21
Alignment explanation
Indices: 93209009--93209052 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
93208999 AACTTAAAGT
* *
93209009 AGAGGCGGCAGTGAGGGAAGC
1 AGAGGCGGCAGCGAGAGAAGC
93209030 AGAGGC-GCAGCGAGAGAAGC
1 AGAGGCGGCAGCGAGAGAAGC
93209050 AGA
1 AGA
93209053 ACAAAGCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.34, C:0.16, G:0.48, T:0.02
Consensus pattern (21 bp):
AGAGGCGGCAGCGAGAGAAGC
Found at i:93210946 original size:24 final size:24
Alignment explanation
Indices: 93210911--93210956 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
93210901 TCATTTAACT
*
93210911 TAATTGAATATGTTCATGAACATA
1 TAATTGAATATGTTCACGAACATA
93210935 TAATT-AATTATGTTCACGAACA
1 TAATTGAA-TATGTTCACGAACA
93210957 ATGTTAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (24 bp):
TAATTGAATATGTTCACGAACATA
Found at i:93231788 original size:9 final size:8
Alignment explanation
Indices: 93231772--93231814 Score: 52
Period size: 8 Copynumber: 5.2 Consensus size: 8
93231762 AAAAATTTCT
93231772 AAAATATA
1 AAAATATA
93231780 AAAATTATA
1 AAAA-TATA
93231789 AAAACTA-A
1 AAAA-TATA
*
93231797 AAAATAAA
1 AAAATATA
93231805 AAAATATA
1 AAAATATA
93231813 AA
1 AA
93231815 TATGTTAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 2 0.06
8 19 0.61
9 10 0.32
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAATATA
Found at i:93231792 original size:17 final size:17
Alignment explanation
Indices: 93231754--93231814 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
93231744 CATCATTCGA
*
93231754 AAAAATAAAAAAATT-T
1 AAAAATATAAAAATTAT
*
93231770 CTAAAATATAAAAATTAT
1 -AAAAATATAAAAATTAT
*
93231788 AAAAACTA-AAAAA-TAA
1 AAAAA-TATAAAAATTAT
93231804 AAAAATATAAA
1 AAAAATATAAA
93231815 TATGTTAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
15 2 0.05
16 10 0.27
17 22 0.59
18 3 0.08
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (17 bp):
AAAAATATAAAAATTAT
Found at i:93235835 original size:29 final size:29
Alignment explanation
Indices: 93235793--93235850 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
93235783 TTGAGCGTTG
93235793 GATGAATTAATTTTTTGAACCAAATTATA
1 GATGAATTAATTTTTTGAACCAAATTATA
* *
93235822 GATGAATTAATTTTTTGGACTAAATTATA
1 GATGAATTAATTTTTTGAACCAAATTATA
93235851 AGGTACAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (29 bp):
GATGAATTAATTTTTTGAACCAAATTATA
Found at i:93236037 original size:29 final size:29
Alignment explanation
Indices: 93236005--93236063 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
93235995 AAATGGTTTT
*
93236005 TTTATAAAAATAACCCAAATTTTTTATTA
1 TTTACAAAAATAACCCAAATTTTTTATTA
* * **
93236034 TTTACAAAAATGACTCACTTTTTTTATTA
1 TTTACAAAAATAACCCAAATTTTTTATTA
93236063 T
1 T
93236064 GTAAATAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (29 bp):
TTTACAAAAATAACCCAAATTTTTTATTA
Found at i:93237065 original size:195 final size:192
Alignment explanation
Indices: 93236728--93237137 Score: 511
Period size: 195 Copynumber: 2.1 Consensus size: 192
93236718 GCAACTGGGC
* * * * *
93236728 ATCGAATTATGTCAAAAAATTAAAGTATAGAGATTAAATTTTAAAATTGTGCATATTATTGGGAG
1 ATCGAATTATGTC-AAAAATTAAAGTATAAAGATTAAATTTTAAAATTGAGCATAATATAGGAAG
* * * * **
93236793 CAAAAATTTGACTATTGTTATATAATCTCAAAAAAGAAGTAAAAGGTCGTGTATTTGGACATGTG
65 CAAAAATTTGACCATTATTATATAATCTCAAAAAAGAAGTAAAAGATCGTGCATCGGGACATGTG
* * * **
93236858 TACGTCAACATTTTAATCAGAATGAAGTGTTTAGACTAACCATGACATTATAAAAATCGAGGT
130 TACGTCAACATTTTAATCAGAATGAAGTATTTAGACTAACAATGAAATTATAAAAATCGAAAT
* *
93236921 ATCGAATTATGTCAAAAATTAAAGTATAAAGATTAAA-TTTAAATTTGAGCATAATATAGGAATC
1 ATCGAATTATGTCAAAAATTAAAGTATAAAGATTAAATTTTAAAATTGAGCATAATATAGGAAGC
* * *
93236985 AAAGTTAAAATTTGACCATTATTATATAATCT-AAAAAATAAGTAAAAGATTGTGCATCGGGATA
66 --A---AAAATTTGACCATTATTATATAATCTCAAAAAAGAAGTAAAAGATCGTGCATCGGGACA
* * *
93237049 TGTGTAGGTCAACATTTTAATCAGAATGAAGTATTTAGACTTACAATGAAATTATAAAAGTCGAA
126 TGTGTACGTCAACATTTTAATCAGAATGAAGTATTTAGACTAACAATGAAATTATAAAAATCGAA
93237114 AT
191 AT
* *
93237116 ACCAAATTATGTC-AAAATTAAA
1 ATCGAATTATGTCAAAAATTAAA
93237138 TTCAAAACTT
Statistics
Matches: 186, Mismatches: 26, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
191 21 0.11
192 23 0.12
193 14 0.08
194 9 0.05
195 95 0.51
196 24 0.13
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.32
Consensus pattern (192 bp):
ATCGAATTATGTCAAAAATTAAAGTATAAAGATTAAATTTTAAAATTGAGCATAATATAGGAAGC
AAAAATTTGACCATTATTATATAATCTCAAAAAAGAAGTAAAAGATCGTGCATCGGGACATGTGT
ACGTCAACATTTTAATCAGAATGAAGTATTTAGACTAACAATGAAATTATAAAAATCGAAAT
Found at i:93242153 original size:16 final size:16
Alignment explanation
Indices: 93242132--93242171 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
93242122 AGTAAAAATG
93242132 TGGGTAAATATTTGTT
1 TGGGTAAATATTTGTT
93242148 TGGGTAAATATTTGTT
1 TGGGTAAATATTTGTT
93242164 TGGGTAAA
1 TGGGTAAA
93242172 AATGACAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.45
Consensus pattern (16 bp):
TGGGTAAATATTTGTT
Found at i:93242865 original size:92 final size:89
Alignment explanation
Indices: 93242711--93242879 Score: 250
Period size: 92 Copynumber: 1.9 Consensus size: 89
93242701 TAAAAACATA
* **
93242711 ATTTTTTTTATTTTTTATGTTTTTCAATTTTTAATTTCAAATTTTTATTGAATTTTTAAATATTA
1 ATTTCTTTTATTTTTTATGTTTTTCAATTTTT-ATTGAAAATTTTTATTGAATTTTTAAATATTA
93242776 AAAATTTCAAAAGTATAAATAATTT
65 AAAATTTCAAAAGTATAAATAATTT
*
93242801 ATTTCTTTTATTTTTCTATGTTTTTCAATTTTT-TTGAAAATTTTTTATTTTGAATTTTTTAATA
1 ATTTCTTTTATTTTT-TATGTTTTTCAATTTTTATTGAAAA-TTTTTA--TTGAATTTTTAAATA
93242865 TTAAAAATTTCAAAA
62 TTAAAAATTTCAAAA
93242880 AAATATAAAT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
89 5 0.07
90 20 0.28
91 17 0.24
92 29 0.41
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (89 bp):
ATTTCTTTTATTTTTTATGTTTTTCAATTTTTATTGAAAATTTTTATTGAATTTTTAAATATTAA
AAATTTCAAAAGTATAAATAATTT
Found at i:93249015 original size:59 final size:59
Alignment explanation
Indices: 93248923--93249038 Score: 223
Period size: 59 Copynumber: 2.0 Consensus size: 59
93248913 CTTAACGAGG
93248923 GAGGGTTGCTCTGCCAAACCAAGTGCGAGATTCAGAAAATCACAGCCAGAATCACCCTT
1 GAGGGTTGCTCTGCCAAACCAAGTGCGAGATTCAGAAAATCACAGCCAGAATCACCCTT
*
93248982 GAGGGTTGCTCTGCCAAACCAAGTGTGAGATTCAGAAAATCACAGCCAGAATCACCC
1 GAGGGTTGCTCTGCCAAACCAAGTGCGAGATTCAGAAAATCACAGCCAGAATCACCC
93249039 AATGGACTCG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.33, C:0.27, G:0.22, T:0.18
Consensus pattern (59 bp):
GAGGGTTGCTCTGCCAAACCAAGTGCGAGATTCAGAAAATCACAGCCAGAATCACCCTT
Found at i:93250325 original size:40 final size:40
Alignment explanation
Indices: 93250276--93250398 Score: 174
Period size: 40 Copynumber: 3.0 Consensus size: 40
93250266 ATAAAACAGG
*
93250276 AAAACGCTTCCTTAAGGAAGCACTTTGTCCACGTGGACAA
1 AAAACGCTTCCTTAAGGAAGCGCTTTGTCCACGTGGACAA
* * *
93250316 AAAACGCTTCCTCAAGGAAGTGCTTTGTCCACGTGGACAG
1 AAAACGCTTCCTTAAGGAAGCGCTTTGTCCACGTGGACAA
* *
93250356 AAAACGCTTCCTTGAGGGAGCGCTTTGTGTCCACGTGGACAA
1 AAAACGCTTCCTTAAGGAAGCGC-TT-TGTCCACGTGGACAA
93250398 A
1 A
93250399 GTGCTTCCTT
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 55 0.76
41 2 0.03
42 15 0.21
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.23
Consensus pattern (40 bp):
AAAACGCTTCCTTAAGGAAGCGCTTTGTCCACGTGGACAA
Found at i:93251323 original size:92 final size:92
Alignment explanation
Indices: 93251192--93251443 Score: 371
Period size: 92 Copynumber: 2.7 Consensus size: 92
93251182 ACCCTAAATA
* *
93251192 CTAAACCCCAATCTAA-CTTTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTA
1 CTAAACCCTAATCTAATTTTTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTA
93251256 ATTTATTTAATTTTTCCCTTAAAAACC
66 ATTTATTTAATTTTTCCCTTAAAAACC
*
93251283 CTAAACCCTAATCTAATTTTTTTTTTAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTA
1 CTAAACCCTAATCTAATTTTTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTA
*
93251348 ATTTATTTAATTTTTTCCTTAAAAACC
66 ATTTATTTAATTTTTCCCTTAAAAACC
* * * * * * *
93251375 ATAAACACTAAACCCTAATCTATTTTTTAAAATTTATAATTAATTTAATTAAGAAACCCTAAACC
1 CTAAACCCT-AA-TCTAAT-TTTTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACC
93251440 CTAA
63 CTAA
93251444 ACCCTTATTT
Statistics
Matches: 145, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
91 15 0.10
92 79 0.54
93 2 0.01
94 5 0.03
95 44 0.30
ACGTcount: A:0.39, C:0.19, G:0.01, T:0.40
Consensus pattern (92 bp):
CTAAACCCTAATCTAATTTTTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTA
ATTTATTTAATTTTTCCCTTAAAAACC
Found at i:93262631 original size:23 final size:24
Alignment explanation
Indices: 93262605--93262660 Score: 69
Period size: 26 Copynumber: 2.3 Consensus size: 24
93262595 TGTATATATA
*
93262605 AATTTTTTT-ATAATGTTAGAAAT
1 AATTTTTTTAAGAATGTTAGAAAT
93262628 AATTTTTTTTAAAGAATGTTAGAAAT
1 AA-TTTTTTT-AAGAATGTTAGAAAT
*
93262654 AGTTTTT
1 AATTTTT
93262661 GAATGTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 2 0.07
24 7 0.25
25 5 0.18
26 14 0.50
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.52
Consensus pattern (24 bp):
AATTTTTTTAAGAATGTTAGAAAT
Found at i:93263909 original size:17 final size:17
Alignment explanation
Indices: 93263887--93263920 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
93263877 TTTTATAATA
93263887 TATAAA-TTATTTTTTAT
1 TATAAACTT-TTTTTTAT
93263904 TATAAACTTTTTTTTAT
1 TATAAACTTTTTTTTAT
93263921 AATTTTAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (17 bp):
TATAAACTTTTTTTTAT
Found at i:93265511 original size:172 final size:172
Alignment explanation
Indices: 93265225--93265569 Score: 672
Period size: 172 Copynumber: 2.0 Consensus size: 172
93265215 CTATCTCCCG
93265225 ATGATGACTGATAAGACCAAATTGAAGTTGCACACGTTGACAAACATTTTAACACTAATCAACTT
1 ATGATGACTGATAAGACCAAATTGAAGTTGCACACGTTGACAAACATTTTAACACTAATCAACTT
*
93265290 CAACACAAGGAACTGCTTCATTGCAGATCTTTCCAAGTTCACAAAACTTAGGAAGTTGGGGATTC
66 CAACACAAGGAACTGCTTCATTGCAGATCTTTCCAAGTTCACAAAACTTAGAAAGTTGGGGATTC
93265355 TTGGGCCATTCAATATTGATGATTTTAAGGAGGAGCTGGATA
131 TTGGGCCATTCAATATTGATGATTTTAAGGAGGAGCTGGATA
93265397 ATGATGACTGATAAGACCAAATTGAAGTTGCACACGTTGACAAACATTTTAACACTAATCAACTT
1 ATGATGACTGATAAGACCAAATTGAAGTTGCACACGTTGACAAACATTTTAACACTAATCAACTT
*
93265462 CAACACAAGGAACTGCTTCATTGCAGATCTTTCCAAGTTCACAAAACTTATAAAGTTGGGGATTC
66 CAACACAAGGAACTGCTTCATTGCAGATCTTTCCAAGTTCACAAAACTTAGAAAGTTGGGGATTC
93265527 TTGGGCCATTCAATATTGATGATTTTAAGGAGGAGCTGGATA
131 TTGGGCCATTCAATATTGATGATTTTAAGGAGGAGCTGGATA
93265569 A
1 A
93265570 GAATCTGCCA
Statistics
Matches: 171, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
172 171 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (172 bp):
ATGATGACTGATAAGACCAAATTGAAGTTGCACACGTTGACAAACATTTTAACACTAATCAACTT
CAACACAAGGAACTGCTTCATTGCAGATCTTTCCAAGTTCACAAAACTTAGAAAGTTGGGGATTC
TTGGGCCATTCAATATTGATGATTTTAAGGAGGAGCTGGATA
Found at i:93268168 original size:226 final size:225
Alignment explanation
Indices: 93267774--93268227 Score: 746
Period size: 226 Copynumber: 2.0 Consensus size: 225
93267764 AACTATCCAT
* *
93267774 TCAAGAAGGCTCAATATACTGCCAATCAATGAGAAAATATTATATTGGGGTACTCGGGGAACTCG
1 TCAAGAAGGCTCAATATACCGCCAATCAATGAGAAAATATTATATTAGGGTACTCGGGGAACTCG
* * * **
93267839 AACGCATGCGACGCATCAGGATTTATGCTCGACATGTGCGCTTCAGGGTCATTGTGTATGACAAT
66 AACACATGCGACACATCAAGATTTACACTCGACATGTGCGCTTCAGGGTCATTGTGTATGACAAT
** * *
93267904 GCCATGACTCGGGTTCTTGATCAAAGGGGCGTAAACATTTTCATCATCATCCACACCTTCGTCAT
131 GCCACAACCCGGGTTCTTGATCAAAGGGGCGTAAACATTTTCATCATAATCCACACCTTCGTCAT
93267969 CGATATCATCTGGGACCTAAAATCTTCACCC
196 CGATATCA-CTGGGACCTAAAATCTTCACCC
* * * *
93268000 TCAAGAAGGCTCGATATGCCGCCAATCAATGAGCAAATATTATATTAGGGTACTTGGGGAACTCG
1 TCAAGAAGGCTCAATATACCGCCAATCAATGAGAAAATATTATATTAGGGTACTCGGGGAACTCG
93268065 AACACATGCGACACATCAAGATTTACACTCGACATGTGCGCTTCAGGGTCATTGTGTATGACAAT
66 AACACATGCGACACATCAAGATTTACACTCGACATGTGCGCTTCAGGGTCATTGTGTATGACAAT
*
93268130 GCCACAACCCGGGTTCTTGATCAAAGGGGCGTAAACATTTTCATCATAATCCACACCTTCGTCGT
131 GCCACAACCCGGGTTCTTGATCAAAGGGGCGTAAACATTTTCATCATAATCCACACCTTCGTCAT
*
93268195 TGATATCACTGGGACCTAAAATCTTCACCC
196 CGATATCACTGGGACCTAAAATCTTCACCC
93268225 TCA
1 TCA
93268228 TTATCAAAAT
Statistics
Matches: 211, Mismatches: 17, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
225 25 0.12
226 186 0.88
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (225 bp):
TCAAGAAGGCTCAATATACCGCCAATCAATGAGAAAATATTATATTAGGGTACTCGGGGAACTCG
AACACATGCGACACATCAAGATTTACACTCGACATGTGCGCTTCAGGGTCATTGTGTATGACAAT
GCCACAACCCGGGTTCTTGATCAAAGGGGCGTAAACATTTTCATCATAATCCACACCTTCGTCAT
CGATATCACTGGGACCTAAAATCTTCACCC
Found at i:93269393 original size:50 final size:54
Alignment explanation
Indices: 93269263--93269411 Score: 207
Period size: 50 Copynumber: 2.8 Consensus size: 54
93269253 ATTTGGGTAA
* *
93269263 AGAGATCCCATGTAAGACCATGTCTGGGACATTGCATTGGCATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC-TGAGATCA-G
* *
93269319 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GAGA-C-G
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTGAGATCAG
*
93269369 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
93269412 GTTATGATCA
Statistics
Matches: 86, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
50 41 0.48
52 1 0.01
53 4 0.05
55 2 0.02
56 38 0.44
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (54 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTGAGATCAG
Found at i:93271835 original size:5 final size:5
Alignment explanation
Indices: 93271827--93271902 Score: 102
Period size: 5 Copynumber: 15.0 Consensus size: 5
93271817 ATATATATTA
*
93271827 TATAT TATAT TAT-T TA-AT TAATAAGT AATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT T-AT-A-T TATAT TATAT TATAT TATAT
93271873 TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT
93271903 AAAACAAATG
Statistics
Matches: 64, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
4 5 0.08
5 54 0.84
6 1 0.02
7 3 0.05
8 1 0.02
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:93272990 original size:25 final size:25
Alignment explanation
Indices: 93272961--93273065 Score: 99
Period size: 25 Copynumber: 4.3 Consensus size: 25
93272951 ACTTTAGCGC
93272961 GCTCTCTGATTTTTAGCACGTTAGT
1 GCTCTCTGATTTTTAGCACGTTAGT
* * * *
93272986 GCTCTCTGACTATTAGAACGTTGGT
1 GCTCTCTGATTTTTAGCACGTTAGT
* * * *
93273011 GCTCTTTGATATTTAGCATGTCAGT
1 GCTCTCTGATTTTTAGCACGTTAGT
* *
93273036 GCTCTCTG---TATAGCACTTTAGT
1 GCTCTCTGATTTTTAGCACGTTAGT
93273058 GCTCTCTG
1 GCTCTCTG
93273066 TTCATTAGTG
Statistics
Matches: 63, Mismatches: 17, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
22 18 0.29
25 45 0.71
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.41
Consensus pattern (25 bp):
GCTCTCTGATTTTTAGCACGTTAGT
Found at i:93278838 original size:12 final size:12
Alignment explanation
Indices: 93278821--93278845 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93278811 ATATTCTTTT
93278821 ATAAAATAAAAA
1 ATAAAATAAAAA
93278833 ATAAAATAAAAA
1 ATAAAATAAAAA
93278845 A
1 A
93278846 GGACCCGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
ATAAAATAAAAA
Found at i:93284259 original size:23 final size:23
Alignment explanation
Indices: 93284227--93284272 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
93284217 TTCTTACATT
*
93284227 GTAAATCGTTAAAAATATTGGTA
1 GTAAACCGTTAAAAATATTGGTA
*
93284250 GTAAACCGTTAGAAATATTGGTA
1 GTAAACCGTTAAAAATATTGGTA
93284273 AATCGTTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.33
Consensus pattern (23 bp):
GTAAACCGTTAAAAATATTGGTA
Found at i:93284279 original size:20 final size:20
Alignment explanation
Indices: 93284227--93284294 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 20
93284217 TTCTTACATT
*
93284227 GTAAATCGTTAAAAATATTGG
1 GTAAATCGTTAGAAATATT-G
*
93284248 TAGTAAACCGTTAGAAATATTG
1 --GTAAATCGTTAGAAATATTG
* *
93284270 GTAAATCGTTAGATATTTTG
1 GTAAATCGTTAGAAATATTG
93284290 GTAAA
1 GTAAA
93284295 AGCTTTTACT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
20 22 0.55
22 1 0.03
23 17 0.43
ACGTcount: A:0.40, C:0.06, G:0.19, T:0.35
Consensus pattern (20 bp):
GTAAATCGTTAGAAATATTG
Done.