Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 27 of 290
Found at i:9131570 original size:83 final size:80
Alignment explanation
Indices: 9131431--9131608 Score: 250
Period size: 83 Copynumber: 2.2 Consensus size: 80
9131421 GATGATATCT
** * * *
9131431 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCTGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTG
9131496 CGAGTAGTTGCTATACCC
66 C--G-AGTTGCTATACCC
*
9131514 GGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTG
*
9131579 CGAGTTGCTATATCC
66 CGAGTTGCTATACCC
*
9131594 -GGCTAAATCCCGAAG
1 GGGCTAAGTCCCGAAG
9131609 ATACTTGGGT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 14 0.16
80 12 0.14
81 1 0.01
83 60 0.69
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTCATGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTG
CGAGTTGCTATACCC
Found at i:9137341 original size:10 final size:10
Alignment explanation
Indices: 9137326--9137352 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
9137316 TTAAAAATTG
9137326 CAACATGGAT
1 CAACATGGAT
9137336 CAACATGGAT
1 CAACATGGAT
9137346 CAACATG
1 CAACATG
9137353 CAAATCACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.19
Consensus pattern (10 bp):
CAACATGGAT
Found at i:9141746 original size:40 final size:40
Alignment explanation
Indices: 9141674--9141916 Score: 384
Period size: 40 Copynumber: 6.1 Consensus size: 40
9141664 GGGATTTAAT
* *
9141674 CGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
*
9141713 CGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
9141753 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
9141793 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
9141833 CGGATCTAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
9141873 CGGATCTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACT--CGCACAAATGCCTTCGGGACTTAGCC
9141914 CGG
1 CGG
9141917 TTATCATCCA
Statistics
Matches: 195, Mismatches: 5, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
38 1 0.01
39 16 0.08
40 150 0.77
41 24 0.12
42 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:9151953 original size:19 final size:19
Alignment explanation
Indices: 9151929--9151969 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
9151919 ACAAACCAAT
9151929 CATCAACCCTATTACATGC
1 CATCAACCCTATTACATGC
9151948 CATCAACCCTATTACATGC
1 CATCAACCCTATTACATGC
9151967 CAT
1 CAT
9151970 TTATAACCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.32, C:0.37, G:0.05, T:0.27
Consensus pattern (19 bp):
CATCAACCCTATTACATGC
Found at i:9152558 original size:41 final size:41
Alignment explanation
Indices: 9152513--9152617 Score: 126
Period size: 41 Copynumber: 2.6 Consensus size: 41
9152503 AATCGGCAGG
*
9152513 AAGCCTGCTAGGC-TAAAGGCCTAAT-ATAATACACC-GACTCA
1 AAGCCTGCTAGGCATAAA-GCCTAATAAT-ATACACCAG-CACA
* *
9152554 AAGCCTGCTAAGCATAAAGCCTAATAATATACATCAGCACA
1 AAGCCTGCTAGGCATAAAGCCTAATAATATACACCAGCACA
*
9152595 AAGCCTGCTAGGCACAAAGCCTA
1 AAGCCTGCTAGGCATAAAGCCTA
9152618 TTAGGCACAA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
41 49 0.88
42 7 0.12
ACGTcount: A:0.39, C:0.27, G:0.16, T:0.18
Consensus pattern (41 bp):
AAGCCTGCTAGGCATAAAGCCTAATAATATACACCAGCACA
Found at i:9152611 original size:16 final size:16
Alignment explanation
Indices: 9152590--9152633 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
9152580 ATATACATCA
9152590 GCACAAAGCCTGCTAG
1 GCACAAAGCCTGCTAG
**
9152606 GCACAAAGCCTATTAG
1 GCACAAAGCCTGCTAG
*
9152622 GCACAAATCCTG
1 GCACAAAGCCTG
9152634 ATAATATACA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.34, C:0.30, G:0.20, T:0.16
Consensus pattern (16 bp):
GCACAAAGCCTGCTAG
Found at i:9163577 original size:31 final size:32
Alignment explanation
Indices: 9163539--9163599 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
9163529 CTCGCTGCAA
* *
9163539 TCTGGTGGCTTCGCCAC-ATATATATATCTTT
1 TCTGGTGGCCTAGCCACAATATATATATCTTT
*
9163570 TCTGGTGGCCTAGCCACAATATCTATATCT
1 TCTGGTGGCCTAGCCACAATATATATATCT
9163600 GGTGACTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.58
32 11 0.42
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTTT
Found at i:9167947 original size:14 final size:15
Alignment explanation
Indices: 9167930--9167958 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9167920 ATTTATTGCT
9167930 TTTCA-TTTATTTAC
1 TTTCATTTTATTTAC
9167944 TTTCATTTTATTTAC
1 TTTCATTTTATTTAC
9167959 CTTATTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTCATTTTATTTAC
Found at i:9173934 original size:40 final size:40
Alignment explanation
Indices: 9173890--9174052 Score: 202
Period size: 40 Copynumber: 4.0 Consensus size: 40
9173880 ATTAGGGTTA
9173890 ATGAGATTACGTGTAAGACCATATCTGGGATATGGCATCT
1 ATGAGATTACGTGTAAGACCATATCTGGGATATGGCATCT
* *
9173930 ATGAGATTTCGTGTAAGACCATATCTGAGATATGGCATCGAT
1 ATGAGATTACGTGTAAGACCATATCTGGGATATGGCATC--T
* * * *
9173972 ATGAGATTTCGTGTAAGACCACT-GCTGGGTTATTGGCATTGAT
1 ATGAGATTACGTGTAAGACCA-TATCTGGGATA-TGGCA-T-CT
*
9174015 ATGAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 ATGAGATTACGTGTAAGACCATATCTGGGATATGGCAT
9174053 TGGTACGGTA
Statistics
Matches: 106, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
40 37 0.35
41 1 0.01
42 34 0.32
43 33 0.31
44 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (40 bp):
ATGAGATTACGTGTAAGACCATATCTGGGATATGGCATCT
Found at i:9174041 original size:85 final size:82
Alignment explanation
Indices: 9173890--9174052 Score: 220
Period size: 85 Copynumber: 2.0 Consensus size: 82
9173880 ATTAGGGTTA
* * * *
9173890 ATGAGATTACGTGTAAGACCATATCTGGGATATGGCATCTATGAGATTTCGTGTAAGACCATATC
1 ATGAGATTACGTGTAAGACCATAGCTGGGATATGGCATATATGAGATTACATGTAAGACCATATC
9173955 TGAGATATGGCATCGAT
66 TGAGATATGGCATCGAT
* *
9173972 ATGAGATTTCGTGTAAGACCACT-GCTGGGTTATTGGCATTGATATGAGATTACATGTAAGACCA
1 ATGAGATTACGTGTAAGACCA-TAGCTGGGATA-TGGCA-T-ATATGAGATTACATGTAAGACCA
*
9174036 TATCTGGGATATGGCAT
62 TATCTGAGATATGGCAT
9174053 TGGTACGGTA
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
82 27 0.39
83 6 0.09
84 1 0.01
85 36 0.51
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (82 bp):
ATGAGATTACGTGTAAGACCATAGCTGGGATATGGCATATATGAGATTACATGTAAGACCATATC
TGAGATATGGCATCGAT
Found at i:9181941 original size:12 final size:12
Alignment explanation
Indices: 9181924--9181948 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9181914 ACTTAATCAC
9181924 TTTAATATTAAA
1 TTTAATATTAAA
9181936 TTTAATATTAAA
1 TTTAATATTAAA
9181948 T
1 T
9181949 CTTATTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:9182101 original size:20 final size:19
Alignment explanation
Indices: 9182076--9182113 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
9182066 TTAATAAAAT
*
9182076 ACTATTAAGATAAGTATTAA
1 ACTATTAAAATAA-TATTAA
9182096 ACTATTAAAATAATATTA
1 ACTATTAAAATAATATTA
9182114 TTTTTGGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (19 bp):
ACTATTAAAATAATATTAA
Found at i:9184576 original size:46 final size:45
Alignment explanation
Indices: 9184443--9184658 Score: 164
Period size: 46 Copynumber: 4.6 Consensus size: 45
9184433 GGTGGTATGT
* * ** *
9184443 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATCATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTGA-GATGA
* * * * * * *
9184489 GTGCCAGTGCAAGACATGTCTGGGAAATACATCGGTA-TTGAGACGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-G-ACCTGAGATGA
*
9184535 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGATATA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACC-TGAGAT-GA
* * * *
9184582 CAAGCTAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGATGA
1 -GAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGAC-CTG--AGATGA
* *
9184632 GAGCTAGTGTAAGACCTGTCTAGGACA
1 GAGCTAGTGTAAGACATGTCTGGGACA
9184659 CGACGTTGAC
Statistics
Matches: 134, Mismatches: 26, Indels: 17
0.76 0.15 0.10
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 65 0.49
47 3 0.02
48 25 0.19
49 33 0.25
50 2 0.01
51 4 0.03
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTGAGATGA
Found at i:9184638 original size:49 final size:48
Alignment explanation
Indices: 9184528--9184658 Score: 149
Period size: 49 Copynumber: 2.7 Consensus size: 48
9184518 CATCGGTATT
* * *
9184528 GAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGA
1 GAGATGAGAGCTAGTGTAAGACCTGTCTGGGACATGCATCGACCTCGA
* * *
9184576 GATAT-ACAAGCTAGTGTAAGACCTGTTTGGGACATGGCATCGACAC-CGA
1 GAGATGA-GAGCTAGTGTAAGACCTGTCTGGGACAT-GCATCGAC-CTCGA
* *
9184625 TAGATGAGAGCTAGTGTAAGACCTGTCTAGGACA
1 GAGATGAGAGCTAGTGTAAGACCTGTCTGGGACA
9184659 CGACGTTGAC
Statistics
Matches: 68, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
47 1 0.01
48 28 0.41
49 37 0.54
50 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (48 bp):
GAGATGAGAGCTAGTGTAAGACCTGTCTGGGACATGCATCGACCTCGA
Found at i:9184839 original size:31 final size:31
Alignment explanation
Indices: 9184804--9184866 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
9184794 AAAGTGAGAA
9184804 AAGTTATGACCATGTGGTGAGTGGTACAGGT
1 AAGTTATGACCATGTGGTGAGTGGTACAGGT
9184835 AAGTTATGACCATGTGGTGAGTGGTACAGGT
1 AAGTTATGACCATGTGGTGAGTGGTACAGGT
9184866 A
1 A
9184867 CCTACTTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.27, C:0.10, G:0.35, T:0.29
Consensus pattern (31 bp):
AAGTTATGACCATGTGGTGAGTGGTACAGGT
Found at i:9186998 original size:40 final size:40
Alignment explanation
Indices: 9186905--9187119 Score: 244
Period size: 40 Copynumber: 5.4 Consensus size: 40
9186895 AAGCCAAGTA
* * * *
9186905 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
9186943 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
9186983 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
9187023 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
9187063 CCTTCGAGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
9187104 CCTTCGGGACTT-GCCC
1 CCTTCGGGACTTAGCCC
9187120 CGGTTATCAT
Statistics
Matches: 153, Mismatches: 18, Indels: 10
0.85 0.10 0.06
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 104 0.68
41 16 0.10
42 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:9195116 original size:40 final size:40
Alignment explanation
Indices: 9195017--9195239 Score: 222
Period size: 40 Copynumber: 5.6 Consensus size: 40
9195007 ATTCCCAAGC
* * * * *
9195017 CAAATACCTTCGGGATTTA-ACCTGATATAGCT-ACTCGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-TAACTCGCA
*
9195056 C-AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
9195095 CCATTGCCTTCAGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
9195135 CTAATGCCTTCGGGACTTGGCCCGGATGTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
9195175 CAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTCATTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
*
9195215 CAAAATGCCTTTGGGACTT-GCCCGG
1 C-AAATGCCTTCGGGACTTAGCCCGG
9195240 TTATCATCCA
Statistics
Matches: 155, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
38 15 0.10
39 17 0.11
40 107 0.69
41 16 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:9208049 original size:11 final size:12
Alignment explanation
Indices: 9208017--9208049 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
9208007 TTCACAAGTG
9208017 AATTAATTCACA
1 AATTAATTCACA
*
9208029 AATGAATTCAC-
1 AATTAATTCACA
9208040 AATTAATTCA
1 AATTAATTCA
9208050 TCTTTGGTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.48, C:0.15, G:0.03, T:0.33
Consensus pattern (12 bp):
AATTAATTCACA
Found at i:9208389 original size:15 final size:15
Alignment explanation
Indices: 9208365--9208396 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
9208355 TATGCATGCA
*
9208365 AAATATAAAAGACAT
1 AAATACAAAAGACAT
9208380 AAATACAAAAGACAT
1 AAATACAAAAGACAT
9208395 AA
1 AA
9208397 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:9209328 original size:69 final size:67
Alignment explanation
Indices: 9209134--9209328 Score: 205
Period size: 69 Copynumber: 2.9 Consensus size: 67
9209124 AAGAGGTTTA
* * * *
9209134 AGGTGTAAGACCATAGCTCGACTATGGTAACCAATGA-AGT-CTGCAATGACATTAAACATAGGG
1 AGGTGTAAGACCATAGCTTGACTATGGCAACCAAT-ATAGTCCTCCAA-GACATTAAACACAGGG
9209197 TTAT
64 TTAT
* * * * * * * ** *
9209201 ATGGTGTAAGACCACAGCTTGGCTATGACAACCAGTATAGTCCACCGAGAAAGAAAACACGGGGA
1 A-GGTGTAAGACCATAGCTTGACTATGGCAACCAATATAGTCCTCCAAGACATTAAACACAGGG-
9209266 TTAT
64 TTAT
9209270 GAGGTGTAAGACCATAGCTTGACTATGGCAACCAATATAGTCCTCCAAGACATTAAACA
1 -AGGTGTAAGACCATAGCTTGACTATGGCAACCAATATAGTCCTCCAAGACATTAAACA
9209329 AGAAACCCGA
Statistics
Matches: 100, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
67 2 0.02
68 42 0.42
69 55 0.55
70 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.22
Consensus pattern (67 bp):
AGGTGTAAGACCATAGCTTGACTATGGCAACCAATATAGTCCTCCAAGACATTAAACACAGGGTT
AT
Found at i:9213719 original size:53 final size:52
Alignment explanation
Indices: 9213655--9213761 Score: 178
Period size: 53 Copynumber: 2.0 Consensus size: 52
9213645 TAAGAATGAT
*
9213655 AGCAGGAATGAGGAGTATAAACTCCTCGAACCACCATGTCCATTCAATGGAG
1 AGCAGGAATGAGGAGTATAAACTCCTCGAACCACCATGACCATTCAATGGAG
* *
9213707 ANGCAGGAATGAGGAGTATAAACTCTTCGAAGCACCATGACCATTCAATGGAG
1 A-GCAGGAATGAGGAGTATAAACTCCTCGAACCACCATGACCATTCAATGGAG
9213760 AG
1 AG
9213762 GTAAGTCGAG
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
52 2 0.04
53 49 0.96
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (52 bp):
AGCAGGAATGAGGAGTATAAACTCCTCGAACCACCATGACCATTCAATGGAG
Found at i:9220085 original size:30 final size:31
Alignment explanation
Indices: 9220029--9220090 Score: 74
Period size: 30 Copynumber: 2.0 Consensus size: 31
9220019 TAAGCACATG
9220029 ATGAAAAGAAGAATCCAACACTAGG-AATAA
1 ATGAAAAGAAGAATCCAACACTAGGAAATAA
* * *
9220059 ATGAAAGGAAGAATGCAAGTAC-AGGAAATAA
1 ATGAAAAGAAGAATCCAA-CACTAGGAAATAA
9220090 A
1 A
9220091 GAGTTTGCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.56, C:0.10, G:0.21, T:0.13
Consensus pattern (31 bp):
ATGAAAAGAAGAATCCAACACTAGGAAATAA
Found at i:9235474 original size:43 final size:43
Alignment explanation
Indices: 9235426--9235592 Score: 289
Period size: 43 Copynumber: 3.9 Consensus size: 43
9235416 CATGAAAAAT
9235426 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
9235469 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * *
9235512 CGGTGATGTGTATTCGGGCTTTCGTGCTTAGCAGGCTTCGTGT
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
9235555 CGGTGTTGTGTATTCGGGTCTTCGTGCCTAGCAGGCTT
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
9235593 AATGCCGATA
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 117 1.00
ACGTcount: A:0.09, C:0.23, G:0.35, T:0.34
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:9235856 original size:28 final size:27
Alignment explanation
Indices: 9235761--9235857 Score: 77
Period size: 29 Copynumber: 3.4 Consensus size: 27
9235751 ATGATTAGAG
* *
9235761 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCAAGTT-C-TTAACCGA
* * **
9235790 GCACTATGTGTGCAAGATCGGTAATTGA
1 GCACTATGTGTGCAAGTTC-TTAACCGA
* *
9235818 GGCACTGTGTGTGCGAGTTCTTCAACCGA
1 -GCACTATGTGTGCAAGTTCTT-AACCGA
9235847 GCACTATGTGT
1 GCACTATGTGT
9235858 ACGAGATCGG
Statistics
Matches: 52, Mismatches: 14, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
28 17 0.33
29 35 0.67
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (27 bp):
GCACTATGTGTGCAAGTTCTTAACCGA
Found at i:9235856 original size:57 final size:58
Alignment explanation
Indices: 9235758--9235868 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 58
9235748 CGAATGATTA
* *
9235758 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCAAGATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTCAACCGAGCACTATGTGTACAAGATCGGTAATT
* * *
9235816 GAGGCACTGTGTGTGCGAGTT-CTTCAACCGAGCACTATGTGTACGAGATCGGT
1 GAGGCACTGTGTGTGCAAATTCCTTCAACCGAGCACTATGTGTACAAGATCGGT
9235869 CAGTGGGCAC
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 29 0.60
58 19 0.40
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCAAATTCCTTCAACCGAGCACTATGTGTACAAGATCGGTAATT
Found at i:9255750 original size:79 final size:82
Alignment explanation
Indices: 9255639--9255823 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
9255629 GCTACTCGTT
* *
9255639 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
9255702 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
9255719 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
9255782 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
9255799 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
9255824 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:9255823 original size:40 final size:40
Alignment explanation
Indices: 9255620--9255823 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
9255610 CGGAATTTAA
** *
9255620 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
9255660 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
9255700 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
9255739 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
9255779 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
9255819 CCGGA
1 CCGGA
9255824 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:9263644 original size:40 final size:39
Alignment explanation
Indices: 9263580--9263711 Score: 176
Period size: 40 Copynumber: 3.3 Consensus size: 39
9263570 TCTTCGGAAT
* *
9263580 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
9263619 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
9263659 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
9263699 TTAGCCCGGATAT
1 TTAGCCCGGATAT
9263712 CATTCAAATG
Statistics
Matches: 82, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
39 7 0.09
40 71 0.87
41 4 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:9266749 original size:23 final size:23
Alignment explanation
Indices: 9266719--9266763 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
9266709 TGAATAGTAA
9266719 TTGTTATAAATTATCTAAAAATT
1 TTGTTATAAATTATCTAAAAATT
9266742 TTGTTATAAATTATCTAAAAAT
1 TTGTTATAAATTATCTAAAAAT
9266764 GTTCTAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.47
Consensus pattern (23 bp):
TTGTTATAAATTATCTAAAAATT
Found at i:9270364 original size:18 final size:17
Alignment explanation
Indices: 9270337--9270370 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
9270327 TTAATTTTGT
9270337 TAAAAAAATTTTAAAACA
1 TAAAAAAA-TTTAAAACA
*
9270355 TAAAATAATTTAAAAC
1 TAAAAAAATTTAAAAC
9270371 TTTAAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAAAAATTTAAAACA
Found at i:9270376 original size:18 final size:18
Alignment explanation
Indices: 9270336--9270378 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
9270326 GTTAATTTTG
9270336 TTAAAAAAATTTTAAAAC
1 TTAAAAAAATTTTAAAAC
* *
9270354 ATAAAATAA-TTTAAAAC
1 TTAAAAAAATTTTAAAAC
9270371 TTTAAAAA
1 -TTAAAAA
9270379 TTAAATTAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (18 bp):
TTAAAAAAATTTTAAAAC
Found at i:9274010 original size:47 final size:47
Alignment explanation
Indices: 9273932--9274192 Score: 407
Period size: 47 Copynumber: 5.6 Consensus size: 47
9273922 CCCTTCGGGA
* * * * * *
9273932 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
9273978 CTCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
9274026 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9274073 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9274120 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
9274167 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
9274193 CACAATTATC
Statistics
Matches: 199, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
46 2 0.01
47 195 0.98
48 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:9278958 original size:43 final size:43
Alignment explanation
Indices: 9278828--9279035 Score: 235
Period size: 43 Copynumber: 4.9 Consensus size: 43
9278818 ATAAGCTCAA
* * * * *
9278828 ACAATGCC-ATATCCCTGATATGGTCTTACATGTTATCAC-AT
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT
* * * * * *
9278869 ATCGATGCCACTATCCGAGACAGGGTCTTAGACG-AATCA-ATAT
1 A-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA-AT
*
9278912 ACAATGCCAATGTCCCAGACATGGCCTTACACGTAATCACAAT
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT
*
9278955 ACAATACCAATGTCCCAGACATGGTCTTACACGTAATCACAAT
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT
* *
9278998 ACAATACCAATGTCCCAGACATAGTCTTACACGTAATC
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATC
9279036 GCAACTCGAT
Statistics
Matches: 142, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
41 1 0.01
42 35 0.25
43 105 0.74
44 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (43 bp):
ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAAT
Found at i:9281916 original size:42 final size:42
Alignment explanation
Indices: 9281799--9281923 Score: 153
Period size: 43 Copynumber: 3.0 Consensus size: 42
9281789 CTCAGTACTG
* * * *
9281799 TATCAATGTCATATCCCAGATATGGTCTTACATGTAATCTTG
1 TATCGATGCCATATCCCAGATATGGTCTTACACGTAATCTTA
* *
9281841 TATCGATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTTA
1 TATCGATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTTA
* *
9281884 TATCGATGCCATATCCCAAATATGGTCCTACACGTAATCT
1 TATCGATGCCATATCCCAGATATGGTCTTACACGTAATCT
9281924 CAGTAACTCT
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 33 0.47
43 37 0.53
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (42 bp):
TATCGATGCCATATCCCAGATATGGTCTTACACGTAATCTTA
Found at i:9286224 original size:6 final size:6
Alignment explanation
Indices: 9286215--9286294 Score: 74
Period size: 6 Copynumber: 12.8 Consensus size: 6
9286205 TATTAGAACT
* *
9286215 AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
*
9286264 AGAATC AGGTAA-C AGAATC AAAAATC AGAAT
1 AGAATC A-G-AATC AGAATC -AGAATC AGAAT
9286295 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
5 3 0.05
6 45 0.74
7 10 0.16
8 3 0.05
ACGTcount: A:0.50, C:0.14, G:0.19, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:9286253 original size:31 final size:31
Alignment explanation
Indices: 9286215--9286294 Score: 124
Period size: 31 Copynumber: 2.5 Consensus size: 31
9286205 TATTAGAACT
* *
9286215 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
9286246 AGAATCAGAATCAGAATCAGAATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
9286277 AGAATCAAAAATCAGAAT
1 AGAATC-AGAATCAGAAT
9286295 GTGAATGCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
31 35 0.78
32 10 0.22
ACGTcount: A:0.50, C:0.14, G:0.19, T:0.17
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:9286732 original size:27 final size:27
Alignment explanation
Indices: 9286702--9286790 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
9286692 GGGGTAAAAT
* *
9286702 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
** *
9286729 GGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
9286756 GGT-ATTTCTACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
9286783 GGTAATTT
1 GGTAATTT
9286791 CAAAAATTAG
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.06
27 44 0.86
28 4 0.08
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:9286911 original size:27 final size:27
Alignment explanation
Indices: 9286773--9287031 Score: 128
Period size: 27 Copynumber: 9.9 Consensus size: 27
9286763 CTACCCTACA
* * * *
9286773 AGGGTATTTTGGTAATTTCAAAAAT-T
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *
9286799 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * **
9286826 AGGGGTATTTTGGTCATTTTATTGATCG
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * * *
9286854 AGGGTATTTGGGTAATTTTGTAAACCA
1 AGGGTATTTCGGTAATTTTATAAATCG
* *
9286881 AGGGTATTTCAGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
**
9286908 AGGGTCAAAT-GGTAA-TTT-T--ATC-
1 AGGGT-ATTTCGGTAATTTTATAAATCG
* ** *
9286930 ---TTATTTCATTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
* *
9286954 AGGATATTTGGGTAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *
9286981 GGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTATAAATCG
* *
9287008 AGGGTATTTCAGTAATTTTGTAAA
1 AGGGTATTTCGGTAATTTTATAAA
9287032 CTAAAGTATT
Statistics
Matches: 176, Mismatches: 42, Indels: 29
0.71 0.17 0.12
Matches are distributed among these distances:
18 2 0.01
19 4 0.02
20 3 0.02
23 6 0.03
25 1 0.01
26 7 0.04
27 146 0.83
28 7 0.04
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTATAAATCG
Found at i:9288432 original size:567 final size:567
Alignment explanation
Indices: 9287197--9289368 Score: 4046
Period size: 567 Copynumber: 3.8 Consensus size: 567
9287187 AACTTATCCA
* *
9287197 ATTGGGCCCACATGGCCCCTTTCGGCCCATCGC-GCTCGAAGTAGCCATCCTACAGTTAGAGTAG
1 ATTGGGCCCACATGGCCCCTTTCGGCCCATCGCGGCCCGAAGTAGCCATCCTACAGCTAGAGTAG
* * *
9287261 TAAGAAATACATACCTAATTGGAGACTGGAGTTAATCCACGCTCTGAGCACTCTTAGCCGACGCC
66 TGAGAAATACACACCTAATTGGAGACTGGAGTTAATCCACGCTCCGAGCACTCTTAGCCGACGCC
*
9287326 CAACCCAAACGAGTACGCCATAAAGTGAAAGGGATCAGCCAAGAAAGGTACCTTACTCTCCTCAT
131 CAACCCAAACGAGCACGCCATAAAGTGAAAGGGATCAGCCAAGAAAGGTACCTTACTCTCCTCAT
* *
9287391 GGTTCTCTCTATTTAAAGCCAGCTTCGCATCCACTCTTATGTTAGCTTCCCAATGTGGGATCCCT
196 AGTTCTCTCTATTTAAAGCCAGCTTCGCATCCACTCTTATGTTAGCTTCCCGATGTGGGATCCCT
9287456 CCATCATCAGACTTTAAATTCAACACCAACTCTTGCCGCCCCCTGTTAGCAAAATAAATGCTCTT
261 CCATCATCAGACTTTAAATTCAACACCAACTCTTGCCGCCCCCTGTTAGCAAAATAAATGCTCTT
* *
9287521 TGCTTGCCATAGGATTCGAACCCATGCCTCCCCTCAGATGCTCCATACACTACTTGCCAC---GC
326 TGCTTGCCATAGGATTCGAACCCATGCCTCCCCTCAGATGCTCCACACGCTACTTGCCACTAAGC
*
9287583 CACAAGGCTTTTTTTGTCACAATTTCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGG
391 CACAAGGCTTTTTGTGTCACAATTTCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGG
** *
9287648 TTTGATTCACTTTAAACCAAAATTTTTACTAGCCACAGATATGAGATTCACCTAGCCCAGTCCAA
456 TTTGATTCACTTTAAACCAATTTTTTTCCTAGCCACAGATATGAGATTCACCTAGCCCAGTCCAA
*
9287713 TATTTACTACACAATCAAACAACTTATCCAATTGGGCCCGTAAGCCC
521 TATTTACTACACAATCAAACAACTTATCCAATTGGGCCCGTAGGCCC
* *
9287760 ATTGGGCCCACATGGCCCTTTTCGGCCCATCACGGCCCGAAGTAGCCATCCTACAGCTAGAGTAG
1 ATTGGGCCCACATGGCCCCTTTCGGCCCATCGCGGCCCGAAGTAGCCATCCTACAGCTAGAGTAG
9287825 TGAGAAATACACACCTAATTGGAGACTGGAGTTAATCCACGCTCCGAGCACTCTTAGCCGACGCC
66 TGAGAAATACACACCTAATTGGAGACTGGAGTTAATCCACGCTCCGAGCACTCTTAGCCGACGCC
9287890 CAACCCAAACGAGCACGCCATAAAGTGAAAGGGATCAGCCAAGAAAGGTACCTTACTCTCCTCAT
131 CAACCCAAACGAGCACGCCATAAAGTGAAAGGGATCAGCCAAGAAAGGTACCTTACTCTCCTCAT
9287955 AGTTCTCTCTATTTAAAGCCAGCTTCGCATCCACTCTTATGTTAGCTTCCCGATGTGGGATCCCT
196 AGTTCTCTCTATTTAAAGCCAGCTTCGCATCCACTCTTATGTTAGCTTCCCGATGTGGGATCCCT
*
9288020 CCATCATCAGACTTTAAATTCAACACCAACTCTTGCCGCCCCCTGTTAGGAAAATAAATGCTCTT
261 CCATCATCAGACTTTAAATTCAACACCAACTCTTGCCGCCCCCTGTTAGCAAAATAAATGCTCTT
* *
9288085 TGCTTTCCATAGGATTTGAACCCATGCCTCCCCTCAGATGCTCCACACGCTACTTGCCACTAAGC
326 TGCTTGCCATAGGATTCGAACCCATGCCTCCCCTCAGATGCTCCACACGCTACTTGCCACTAAGC
9288150 CACAAGGCTTTTTGTGTCACAATTTCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGG
391 CACAAGGCTTTTTGTGTCACAATTTCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGG
9288215 TTTGATTCACTTTAAACCAATTTTTTTCCTAGCCACAGATATGAGATTCACCTAGCCCAGTCCAA
456 TTTGATTCACTTTAAACCAATTTTTTTCCTAGCCACAGATATGAGATTCACCTAGCCCAGTCCAA
9288280 TATTTACTACACAATCAAACAACTTATCCAATTGGGCCCGTAGGCCC
521 TATTTACTACACAATCAAACAACTTATCCAATTGGGCCCGTAGGCCC
9288327 ATTGGGCCCACATGGCCCCTTTCGGCCCATCGCGGCCCGAAGTAGCCATCCTACAGCTAGAGTAG
1 ATTGGGCCCACATGGCCCCTTTCGGCCCATCGCGGCCCGAAGTAGCCATCCTACAGCTAGAGTAG
*
9288392 TGAGAAATACACACCTGATTGGAGACTGGAGTTAATCCACGCTCCGAGCACTCTTAGCCGACGCC
66 TGAGAAATACACACCTAATTGGAGACTGGAGTTAATCCACGCTCCGAGCACTCTTAGCCGACGCC
9288457 CAACCCAAACGAGCACGCCATAAAGTGAAAGGGATCAGCCAAGAAAGGTACCTTACTCTCCTCAT
131 CAACCCAAACGAGCACGCCATAAAGTGAAAGGGATCAGCCAAGAAAGGTACCTTACTCTCCTCAT
9288522 AGTTCTCTCTATTTAAAGCCAGCTTCGCATCCACTCTTATGTTAGCTTCCCGATGTGGGATCCCT
196 AGTTCTCTCTATTTAAAGCCAGCTTCGCATCCACTCTTATGTTAGCTTCCCGATGTGGGATCCCT
*
9288587 CCATCATCAGACTTTAAATTCAACACCAACTCTTGCCGCCCCCTGTTAGGAAAATAAATGCTCTT
261 CCATCATCAGACTTTAAATTCAACACCAACTCTTGCCGCCCCCTGTTAGCAAAATAAATGCTCTT
* *
9288652 TGCTTTCCATAGGATTTGAACCCATGCCTCCCCTCAGATGCTCCACACGCTACTTGCCACTAAGC
326 TGCTTGCCATAGGATTCGAACCCATGCCTCCCCTCAGATGCTCCACACGCTACTTGCCACTAAGC
9288717 CACAAGGCTTTTTGTGTCACAATTTCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGG
391 CACAAGGCTTTTTGTGTCACAATTTCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGG
9288782 TTTGATTCACTTTAAACCAATTTTTTTCCTAGCCACAGATATGAGATTCACCTAGCCCAGTCCAA
456 TTTGATTCACTTTAAACCAATTTTTTTCCTAGCCACAGATATGAGATTCACCTAGCCCAGTCCAA
9288847 TATTTACTACACAATCAAACAACTTATCCAATTGGGCCCGTAGGCCC
521 TATTTACTACACAATCAAACAACTTATCCAATTGGGCCCGTAGGCCC
9288894 ATTGGGCCCACATGGCCCCTTTCGGCCCATCGCGGCCCGAAGTAGCCATCCTACAGCTAGAGTAG
1 ATTGGGCCCACATGGCCCCTTTCGGCCCATCGCGGCCCGAAGTAGCCATCCTACAGCTAGAGTAG
*
9288959 TGAGAAATACACACCTGATTGGAGACTGGAGTTAATCCACGCTCCGAGCACTCTTAGCCGACGCC
66 TGAGAAATACACACCTAATTGGAGACTGGAGTTAATCCACGCTCCGAGCACTCTTAGCCGACGCC
9289024 CAACCCAAACGAGCACGCCATAAAGTGAAAGGGATCAGCCAAGAAAGGTACCTTACTCTCCTCAT
131 CAACCCAAACGAGCACGCCATAAAGTGAAAGGGATCAGCCAAGAAAGGTACCTTACTCTCCTCAT
*
9289089 GGTTCTCTCTATTTAAAGCCAGCTTCGCATCCACTCTTATGTTAGCTTCCCGATGTGGGATCCCT
196 AGTTCTCTCTATTTAAAGCCAGCTTCGCATCCACTCTTATGTTAGCTTCCCGATGTGGGATCCCT
* * *
9289154 CTATCATCAGACTTTAAATTCAACACCAACTCTTGACGCCCCCTGTTAGCTAAATAAATGCTCTT
261 CCATCATCAGACTTTAAATTCAACACCAACTCTTGCCGCCCCCTGTTAGCAAAATAAATGCTCTT
*
9289219 TGCATGCCATAGGATTCGAACCCATGCCTCCCCTCAGATGCTCCACACGCTACTTGCCACTAAGC
326 TGCTTGCCATAGGATTCGAACCCATGCCTCCCCTCAGATGCTCCACACGCTACTTGCCACTAAGC
9289284 CACAAGGCTTTTTGTGTCACAATTTCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGG
391 CACAAGGCTTTTTGTGTCACAATTTCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGG
9289349 TTTGATTCACTTTAAACCAA
456 TTTGATTCACTTTAAACCAA
9289369 AATTTTTACT
Statistics
Matches: 1574, Mismatches: 31, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
563 31 0.02
564 338 0.21
567 1205 0.77
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (567 bp):
ATTGGGCCCACATGGCCCCTTTCGGCCCATCGCGGCCCGAAGTAGCCATCCTACAGCTAGAGTAG
TGAGAAATACACACCTAATTGGAGACTGGAGTTAATCCACGCTCCGAGCACTCTTAGCCGACGCC
CAACCCAAACGAGCACGCCATAAAGTGAAAGGGATCAGCCAAGAAAGGTACCTTACTCTCCTCAT
AGTTCTCTCTATTTAAAGCCAGCTTCGCATCCACTCTTATGTTAGCTTCCCGATGTGGGATCCCT
CCATCATCAGACTTTAAATTCAACACCAACTCTTGCCGCCCCCTGTTAGCAAAATAAATGCTCTT
TGCTTGCCATAGGATTCGAACCCATGCCTCCCCTCAGATGCTCCACACGCTACTTGCCACTAAGC
CACAAGGCTTTTTGTGTCACAATTTCTCCAACAATATTCTTAAGGCCTACCTACTACACCCAGGG
TTTGATTCACTTTAAACCAATTTTTTTCCTAGCCACAGATATGAGATTCACCTAGCCCAGTCCAA
TATTTACTACACAATCAAACAACTTATCCAATTGGGCCCGTAGGCCC
Found at i:9290701 original size:31 final size:31
Alignment explanation
Indices: 9290662--9290730 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
9290652 TATTAGAACT
* * *
9290662 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAAAATCAGAATCAGGTAAC
* *
9290693 GGAATCAGAATCAAAATCAGTATCAGGTAAC
1 AGAATCAGAATCAAAATCAGAATCAGGTAAC
9290724 AGAATCA
1 AGAATCA
9290731 AAAATTAGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAAAATCAGAATCAGGTAAC
Found at i:9291260 original size:27 final size:27
Alignment explanation
Indices: 9291149--9291263 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 27
9291139 GGGGCAAAAT
* * * * *
9291149 GGTAATTTTACCCCATAAGGATATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
9291176 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
9291203 AATATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
9291230 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
9291257 GGTAATT
1 GGTAATT
9291264 TCACAAATTA
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:9291306 original size:27 final size:26
Alignment explanation
Indices: 9291217--9291320 Score: 100
Period size: 27 Copynumber: 3.9 Consensus size: 26
9291207 TTTCTACCCT
* **
9291217 ACAAGGGTATTTTGGTAATTCTACCCT
1 ACAAGGGTATTTTGGTAATTTTA-CAA
* *
9291244 ACAAGGGTATTTCGGTAATTTCACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
* *
9291270 ATTAGGGGTATTTTGGTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* *
9291297 ACCAATGGTATTTTGGTCATTTTA
1 A-CAAGGGTATTTTGGTAATTTTA
9291321 TTGATCGAGG
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
26 2 0.03
27 60 0.97
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.39
Consensus pattern (26 bp):
ACAAGGGTATTTTGGTAATTTTACAA
Found at i:9291358 original size:27 final size:27
Alignment explanation
Indices: 9291328--9291387 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
9291318 TTATTGATCG
**
9291328 AGGGTATGTGGGTAATTTTGTAAACCA
1 AGGGTATGTCAGTAATTTTGTAAACCA
* * *
9291355 AGGGTATTTCAGTAATTTTGTAAATCG
1 AGGGTATGTCAGTAATTTTGTAAACCA
9291382 AGGGTA
1 AGGGTA
9291388 AAATGGTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.30, C:0.07, G:0.28, T:0.35
Consensus pattern (27 bp):
AGGGTATGTCAGTAATTTTGTAAACCA
Found at i:9291373 original size:54 final size:54
Alignment explanation
Indices: 9291245--9291387 Score: 135
Period size: 54 Copynumber: 2.6 Consensus size: 54
9291235 TTCTACCCTA
* * * * * *
9291245 CAAGGGTATTTCGGTAATTTCACAAAT-TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCAGTAATTTTATAAATCGA-GGGTATGTGGGTAATTTTACAAAC
* ** * ** **
9291299 CAATGGTATTTTGGTCATTTTATTGATCGAGGGTATGTGGGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTATAAATCGAGGGTATGTGGGTAATTTTACAAAC
*
9291353 CAAGGGTATTTCAGTAATTTTGTAAATCGAGGGTA
1 CAAGGGTATTTCAGTAATTTTATAAATCGAGGGTA
9291388 AAATGGTAAT
Statistics
Matches: 69, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
54 68 0.99
55 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTCAGTAATTTTATAAATCGAGGGTATGTGGGTAATTTTACAAAC
Found at i:9291435 original size:27 final size:27
Alignment explanation
Indices: 9291405--9291499 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 27
9291395 AATTCTATTT
*
9291405 TATTTCAGTAATTTTACAAATCGAGGA
1 TATTTCAGTAATTTTACAAATCGAGGG
** * *
9291432 TATTTGGGTAATTTTATAAATCGGGGG
1 TATTTCAGTAATTTTACAAATCGAGGG
* *
9291459 TACTTT-GGTAATTTTACAAGTCGAGGG
1 TA-TTTCAGTAATTTTACAAATCGAGGG
*
9291486 TATTTCAATAATTT
1 TATTTCAGTAATTT
9291500 GGTAAGCTAA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.05
27 50 0.89
28 3 0.05
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
TATTTCAGTAATTTTACAAATCGAGGG
Found at i:9292875 original size:17 final size:16
Alignment explanation
Indices: 9292849--9292882 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
9292839 ACAATATGAT
9292849 TGAGATGAATGATTTA
1 TGAGATGAATGATTTA
*
9292865 TGAGAATGAATGCTTTA
1 TGAG-ATGAATGATTTA
9292882 T
1 T
9292883 AGTTGATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (16 bp):
TGAGATGAATGATTTA
Found at i:9302933 original size:18 final size:18
Alignment explanation
Indices: 9302907--9302961 Score: 83
Period size: 18 Copynumber: 3.1 Consensus size: 18
9302897 GGACTTGCAT
*
9302907 ACTGCTTACTGTTACTGC
1 ACTGTTTACTGTTACTGC
*
9302925 ACTGTTTACTGTTATTGC
1 ACTGTTTACTGTTACTGC
*
9302943 ACTGTTTACTGTTGCTGC
1 ACTGTTTACTGTTACTGC
9302961 A
1 A
9302962 ATGGGCCAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.44
Consensus pattern (18 bp):
ACTGTTTACTGTTACTGC
Found at i:9308154 original size:30 final size:31
Alignment explanation
Indices: 9308075--9308157 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
9308065 TCAGTCTCGG
*
9308075 CATAT-ACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
9308105 CATATCATTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
9308136 CATATCACT-GGTCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
9308158 ACTGTAAGTG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 17 0.35
31 31 0.65
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:9308405 original size:25 final size:25
Alignment explanation
Indices: 9308377--9308446 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
9308367 CTCTTTTAAT
*
9308377 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
9308402 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
9308427 AACTGGGGCATAA-CCCTTTT
1 AACTGGGGCA-AAGCCCTTTT
9308447 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 40 0.95
26 2 0.05
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:9309285 original size:26 final size:27
Alignment explanation
Indices: 9309256--9309319 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
9309246 GGGCATATTC
*
9309256 GTCATTTTACCATAC-AGGGGTATACG
1 GTCATTTTACCATACAAGGGCTATACG
* * *
9309282 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTATACG
*
9309309 GTCTTTTTACC
1 GTCATTTTACC
9309320 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
26 13 0.42
27 18 0.58
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTATACG
Found at i:9309321 original size:26 final size:25
Alignment explanation
Indices: 9309240--9309321 Score: 69
Period size: 26 Copynumber: 3.2 Consensus size: 25
9309230 GTCATACGGA
*
9309240 ACCTA-AGGGCATATTC-GTCATTTT
1 ACCTACAGGGC-TATACGGTCATTTT
* *
9309264 ACCATACAGGGGTATACGGTCACTTT
1 ACC-TACAGGGCTATACGGTCATTTT
* *
9309290 ACCCTACAAGGGCTTTACGGTCTTTTT
1 A-CCTAC-AGGGCTATACGGTCATTTT
9309317 ACCTA
1 ACCTA
9309322 TTAGGGGTAT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
24 3 0.07
25 6 0.13
26 19 0.41
27 18 0.39
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (25 bp):
ACCTACAGGGCTATACGGTCATTTT
Found at i:9309478 original size:56 final size:54
Alignment explanation
Indices: 9309370--9309506 Score: 159
Period size: 56 Copynumber: 2.5 Consensus size: 54
9309360 TTGGTAAATC
* *
9309370 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGCATTTCTATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGCATTTCTATAA-TTT
* * * * *
9309425 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAAGGGTATTT-TGGTAATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGCATTTCT-ATAATTT
**
9309480 TACAAATTGAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
9309507 CACAAACCAG
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
54 18 0.26
55 14 0.20
56 37 0.54
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGCATTTCTATAATTT
Found at i:9309511 original size:27 final size:27
Alignment explanation
Indices: 9309370--9309601 Score: 132
Period size: 27 Copynumber: 8.6 Consensus size: 27
9309360 TTGGTAAATC
*
9309370 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
** * * *
9309397 TGTAAACCAATGGCATTTCTA-TAATTTT
1 TACAAATCAAGGGTATTTC-AGTAA-TTT
* *
9309425 TAGAAAGTCAAGGGTATTTCTGTAATTT
1 TACAAA-TCAAGGGTATTTCAGTAATTT
** **
9309453 TGTAAATCAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
**
9309480 TACAAATTGAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCAGTAATTT
* * * **
9309507 CACAAA-CCAGTTGTATTTTGGTAATTT
1 TACAAATCAAG-GGTATTTCAGTAATTT
** *
9309534 TACAAA-CTAAGGGTATTTTGGTAATTC
1 TACAAATC-AAGGGTATTTCAGTAATTT
** *
9309561 TACCCTAT-AGGGGTATTTCAGTAATTT
1 TA-CAAATCAAGGGTATTTCAGTAATTT
* *
9309588 CAC-AATCGAGGGTA
1 TACAAATCAAGGGTA
9309602 AAACGGTAAT
Statistics
Matches: 156, Mismatches: 40, Indels: 19
0.73 0.19 0.09
Matches are distributed among these distances:
25 2 0.01
26 8 0.05
27 114 0.73
28 19 0.12
29 13 0.08
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTCAGTAATTT
Found at i:9309532 original size:110 final size:108
Alignment explanation
Indices: 9309350--9309559 Score: 235
Period size: 110 Copynumber: 1.9 Consensus size: 108
9309340 TTTCATCCTA
* ***
9309350 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGCATTT
1 CAAGGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGCATTT
* *
9309415 CTATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAATTTTGTAAAT
66 CTATAA-TTTTACAAACT-AAGGGTATTT-TGGTAATTTTGTAAAT
* * *** * * *
9309460 CAAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAGTTGTATTT
1 CAAGGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGCATTT
*
9309525 -TGGTAATTTTACAAACTAAGGGTATTTTGGTAATT
66 CT-ATAATTTTACAAACTAAGGGTATTTTGGTAATT
9309560 CTACCCTATA
Statistics
Matches: 83, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
107 1 0.01
108 16 0.19
109 10 0.12
110 56 0.67
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (108 bp):
CAAGGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAATGGCATTT
CTATAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAAT
Found at i:9309610 original size:26 final size:26
Alignment explanation
Indices: 9309579--9309666 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 26
9309569 AGGGGTATTT
9309579 CAGTAATTT-CACAATCGAGGGTAAAA
1 CAGTAATTTGCA-AATCGAGGGTAAAA
* * *
9309605 CGGTAATTTTGTAAATTGAGGGTAAAA
1 CAGTAA-TTTGCAAATCGAGGGTAAAA
* * *
9309632 CAGTAATTCTGTAAATCAAGGGTAACA
1 CAGTAATT-TGCAAATCGAGGGTAAAA
9309659 CAGTAATT
1 CAGTAATT
9309667 CTATAAATCG
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.13
27 44 0.85
28 1 0.02
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.28
Consensus pattern (26 bp):
CAGTAATTTGCAAATCGAGGGTAAAA
Found at i:9309625 original size:27 final size:27
Alignment explanation
Indices: 9309591--9309678 Score: 122
Period size: 27 Copynumber: 3.3 Consensus size: 27
9309581 GTAATTTCAC
* *
9309591 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
9309618 AATTGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * *
9309645 AATCAAGGGTAACACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
9309672 AATCGAG
1 AATCGAG
9309679 CGTACTTTGG
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:9319484 original size:18 final size:18
Alignment explanation
Indices: 9319429--9319484 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
9319419 TGTGGGTAGG
*
9319429 CCGTGTGGTCACACAAAC
1 CCGTGTGGTCACACAAGC
*
9319447 CCATGTGGTCACACAAGC
1 CCGTGTGGTCACACAAGC
*
9319465 CCGTGTGGTCACACACGC
1 CCGTGTGGTCACACAAGC
9319483 CC
1 CC
9319485 ATGTCCCCAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.23, C:0.38, G:0.23, T:0.16
Consensus pattern (18 bp):
CCGTGTGGTCACACAAGC
Found at i:9329003 original size:17 final size:17
Alignment explanation
Indices: 9328983--9329025 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
9328973 TATAATATCT
9328983 AAAATAAAAT-AATAATG
1 AAAATAAAATAAATAA-G
9329000 AAAATATAAATAAATAAG
1 AAAATA-AAATAAATAAG
9329018 AAATATAA
1 AAA-ATAA
9329026 TAGATGAGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 6 0.26
18 9 0.39
19 8 0.35
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (17 bp):
AAAATAAAATAAATAAG
Found at i:9329015 original size:19 final size:17
Alignment explanation
Indices: 9328983--9329025 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
9328973 TATAATATCT
9328983 AAAATA-AAATAATAATG
1 AAAATATAAATAATAA-G
9329000 AAAATATAAATAAATAAG
1 AAAATATAAAT-AATAAG
9329018 -AAATATAA
1 AAAATATAA
9329026 TAGATGAGCG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 14 0.58
18 5 0.21
19 5 0.21
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (17 bp):
AAAATATAAATAATAAG
Found at i:9329109 original size:3 final size:3
Alignment explanation
Indices: 9329101--9329126 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
9329091 TAATTACAAA
9329101 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
9329127 AATAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:9329324 original size:3 final size:3
Alignment explanation
Indices: 9329310--9329345 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
9329300 AAATATACAC
9329310 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
9329346 CAAAAAGCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:9330713 original size:64 final size:64
Alignment explanation
Indices: 9330580--9330699 Score: 213
Period size: 64 Copynumber: 1.9 Consensus size: 64
9330570 TAAAAAATTG
* * *
9330580 AAAATACCTTAGTGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAGAAACTA
1 AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAGAAACTA
9330644 AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
9330700 TTTTTTGAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (64 bp):
AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAGAAACTA
Found at i:9330761 original size:77 final size:77
Alignment explanation
Indices: 9330634--9330954 Score: 468
Period size: 77 Copynumber: 4.2 Consensus size: 77
9330624 ATATGAGTTG
* *
9330634 ATAGAAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 ATAGAAAATAAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
9330699 TTTTTTTGAAAA
66 TTTTTTTGAAAA
* *
9330711 ATAGAAAATAAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGTAATATCAGTTGA
1 ATAGAAAATAAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
9330776 TTTTTTTGAAAA
66 TTTTTTTGAAAA
* * *
9330788 ATAGAAACTAAAAATACCTCAGTGTGTGACCCAAGGCTCAACTCCCCTCTCGCAATATGAGTTGA
1 ATAGAAAATAAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
9330853 TTTTTTTGAAAA
66 TTTTTTTGAAAA
* * * * * * * *
9330865 ACAGAAATTGAAAATACCTCGGTGTGTGACCCGAGGCTCAGCTCACCTCTCGCAACATGAGTTGA
1 ATAGAAAATAAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
9330930 --TTCTTGAAAA
66 TTTTTTTGAAAA
*
9330940 ACAG-AAATAAAAATA
1 ATAGAAAATAAAAATA
9330955 TCAGAATACC
Statistics
Matches: 224, Mismatches: 20, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
74 9 0.04
75 13 0.06
77 202 0.90
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (77 bp):
ATAGAAAATAAAAATACCTCAGCGTGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTGAAAA
Found at i:9331241 original size:13 final size:13
Alignment explanation
Indices: 9331208--9331241 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
9331198 GATTCTTGAC
*
9331208 TTTTTTTCCTTTT
1 TTTTTTTTCTTTT
*
9331221 TTCTTTTTCTTTT
1 TTTTTTTTCTTTT
9331234 TTTTTTTT
1 TTTTTTTT
9331242 TTGCTTTGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTT
Found at i:9331242 original size:22 final size:22
Alignment explanation
Indices: 9331207--9331248 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
9331197 CGATTCTTGA
*
9331207 CTTTTTTTCCTTTTTTCTTTTT
1 CTTTTTTTCCTTTTTGCTTTTT
**
9331229 CTTTTTTTTTTTTTTGCTTT
1 CTTTTTTTCCTTTTTGCTTT
9331249 GTACCCATCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.00, C:0.14, G:0.02, T:0.83
Consensus pattern (22 bp):
CTTTTTTTCCTTTTTGCTTTTT
Found at i:9333222 original size:46 final size:46
Alignment explanation
Indices: 9333172--9333347 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
9333162 TGGTTGAGCA
9333172 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
9333218 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
9333263 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
9333311 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
9333348 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:9333328 original size:93 final size:93
Alignment explanation
Indices: 9333169--9333340 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
9333159 GGATGGTTGA
* *
9333169 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
9333234 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
9333262 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
9333327 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
9333341 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:9346132 original size:3 final size:3
Alignment explanation
Indices: 9346118--9346333 Score: 82
Period size: 3 Copynumber: 72.0 Consensus size: 3
9346108 AAGTATACAC
* *
9346118 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAT TGA -AA TACA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* * * * *
9346164 -AA AAA GAA -AA T-A TAA TAA AAA TAT TAA -AA TAA -AG TAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
9346206 AAA TAC T-A TATA TAA -ATA TATA TACA T-A TACA CATA TAA TAA -AA
1 TAA TAA TAA TA-A TAA TA-A TA-A TA-A TAA TA-A TA-A TAA TAA TAA
* * *
9346250 -AA GT-A TACA CTAA TATA TAA TAA TAA TAA TAA TAA TAG TGA TAA TAT
1 TAA -TAA TA-A -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
9346297 TAA TAA TAT TAGA -AA TAA TAA TAA TAA TAA TTAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA -TAA TAA
9346334 AGAAACGAAA
Statistics
Matches: 163, Mismatches: 26, Indels: 48
0.69 0.11 0.20
Matches are distributed among these distances:
2 21 0.13
3 114 0.70
4 26 0.16
5 2 0.01
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:9346262 original size:142 final size:142
Alignment explanation
Indices: 9345848--9346297 Score: 702
Period size: 142 Copynumber: 3.2 Consensus size: 142
9345838 AATAATGATG
* * * *
9345848 ATAATGATAATAATATTAGCAATAATAATGAAATACAAAAAAGCAAATATAATATAATAATATTA
1 ATAATAATAATAATAATAGTAATAATATTGAAATACAAAAAAGCAAATATAATA-AA-AATATTA
*
9345913 AAATAAAGTAATTAAAAATAATACTGTATATAAATATATAT--AT-T-CATATATAAT-AAAAA-
64 AAATAAAGTAA-TAAAAA-AATACTATATATAAATATATATACATATACATATATAATAAAAAAG
9345972 TATACACTAATAT-TA
127 TATACACTAATATATA
* *
9345987 ATAATAATAATGATAATAGTAATAATATTGAAATAC-AAAAAGCAAATAAAATAAAAATATTAAA
1 ATAATAATAATAATAATAGTAATAATATTGAAATACAAAAAAGCAAATATAATAAAAATATTAAA
9346051 ATAAAGTAAT-AAAAAATACTATATATAAATATATATACATATACATATATAATAAAAAAGTATA
66 ATAAAGTAATAAAAAAATACTATATATAAATATATATACATATACATATATAATAAAAAAGTATA
9346115 CACTAATATATA
131 CACTAATATATA
* *
9346127 ATAATAATAATAATAATAATAATAATATTGAAATACAAAAAAGAAAATATAATAAAAATATTAAA
1 ATAATAATAATAATAATAGTAATAATATTGAAATACAAAAAAGCAAATATAATAAAAATATTAAA
*
9346192 ATAAAGTAATAAAAAAATACTATATATAAATATATATACATATACACATATAATAAAAAAGTATA
66 ATAAAGTAATAAAAAAATACTATATATAAATATATATACATATACATATATAATAAAAAAGTATA
9346257 CACTAATATATA
131 CACTAATATATA
*
9346269 ATAATAATAATAATAATAGTGATAATATT
1 ATAATAATAATAATAATAGTAATAATATT
9346298 AATAATATTA
Statistics
Matches: 288, Mismatches: 14, Indels: 15
0.91 0.04 0.05
Matches are distributed among these distances:
133 21 0.07
134 4 0.01
135 3 0.01
136 19 0.07
137 12 0.04
138 21 0.07
139 44 0.15
140 36 0.12
141 36 0.12
142 92 0.32
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.31
Consensus pattern (142 bp):
ATAATAATAATAATAATAGTAATAATATTGAAATACAAAAAAGCAAATATAATAAAAATATTAAA
ATAAAGTAATAAAAAAATACTATATATAAATATATATACATATACATATATAATAAAAAAGTATA
CACTAATATATA
Found at i:9347416 original size:15 final size:15
Alignment explanation
Indices: 9347380--9347433 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
9347370 GTTTTTTAAT
9347380 TTTGGGTTTAGG-TA
1 TTTGGGTTTAGGTTA
*
9347394 GTTGGGGTTTAGGTTA
1 -TTTGGGTTTAGGTTA
*
9347410 TTTGGG-TTAGTTTA
1 TTTGGGTTTAGGTTA
*
9347424 GTTGGGTTTA
1 TTTGGGTTTA
9347434 AATCTGCTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
14 12 0.36
15 19 0.58
16 2 0.06
ACGTcount: A:0.13, C:0.00, G:0.37, T:0.50
Consensus pattern (15 bp):
TTTGGGTTTAGGTTA
Found at i:9347428 original size:14 final size:14
Alignment explanation
Indices: 9347381--9347431 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
9347371 TTTTTTAATT
9347381 TTGGGTTTAGG-TAG
1 TTGGG-TTAGGTTAG
*
9347395 TTGGGGTTTAGGTTAT
1 TT-GGG-TTAGGTTAG
*
9347411 TTGGGTTAGTTTAG
1 TTGGGTTAGGTTAG
9347425 TTGGGTT
1 TTGGGTT
9347432 TAAATCTGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 16 0.50
15 12 0.38
16 4 0.12
ACGTcount: A:0.12, C:0.00, G:0.39, T:0.49
Consensus pattern (14 bp):
TTGGGTTAGGTTAG
Found at i:9356548 original size:62 final size:62
Alignment explanation
Indices: 9356453--9356570 Score: 227
Period size: 62 Copynumber: 1.9 Consensus size: 62
9356443 ACATAACACT
*
9356453 CATTAAGCTCATTAATTGGTACACCATGTGCAAATATCTTCTAATCGTTAAGAATTATAACA
1 CATTAAGCTCATTAATTGGTACACCATGCGCAAATATCTTCTAATCGTTAAGAATTATAACA
9356515 CATTAAGCTCATTAATTGGTACACCATGCGCAAATATCTTCTAATCGTTAAGAATT
1 CATTAAGCTCATTAATTGGTACACCATGCGCAAATATCTTCTAATCGTTAAGAATT
9356571 CTAGGAAATT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.34
Consensus pattern (62 bp):
CATTAAGCTCATTAATTGGTACACCATGCGCAAATATCTTCTAATCGTTAAGAATTATAACA
Found at i:9358325 original size:26 final size:28
Alignment explanation
Indices: 9358288--9358343 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 28
9358278 TCACATATAA
* *
9358288 CTTCCTATTTTTTCCTATTTTATT-TTT
1 CTTCCTATTTTTTCCAATTGTATTGTTT
9358315 CTTCCTA-TTTTTCCAATTGTATTGTTT
1 CTTCCTATTTTTTCCAATTGTATTGTTT
9358342 CT
1 CT
9358344 ATTTTCAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.12, C:0.20, G:0.04, T:0.64
Consensus pattern (28 bp):
CTTCCTATTTTTTCCAATTGTATTGTTT
Found at i:9361025 original size:20 final size:20
Alignment explanation
Indices: 9361002--9361055 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
9360992 AGTTTTTCCC
*
9361002 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
9361022 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
9361042 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
9361056 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:9361037 original size:30 final size:30
Alignment explanation
Indices: 9361002--9361075 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
9360992 AGTTTTTCCC
9361002 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
9361032 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
9361062 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
9361076 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:9361065 original size:20 final size:20
Alignment explanation
Indices: 9361002--9361066 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
9360992 AGTTTTTCCC
* * * *
9361002 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
9361022 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
9361041 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
9361062 AGCTC
1 AGCTC
9361067 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:9363498 original size:22 final size:23
Alignment explanation
Indices: 9363465--9363508 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
9363455 TTTTACATGA
9363465 ATTTTATATAAAT-T-TATTTTG
1 ATTTTATATAAATATATATTTTG
*
9363486 ATTTATATTTAAATATATATTTT
1 ATTT-TATATAAATATATATTTT
9363509 TTGGTTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 8 0.42
23 1 0.05
24 6 0.32
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (23 bp):
ATTTTATATAAATATATATTTTG
Found at i:9367614 original size:104 final size:104
Alignment explanation
Indices: 9367430--9367683 Score: 280
Period size: 104 Copynumber: 2.4 Consensus size: 104
9367420 TTCATATGCC
* *
9367430 ACACGGCCTGGACACACGCCCATGTCCTTGCCCGTGTGGCTCACACGTCTTGAGCACACGTCCTT
1 ACACGGCCTGGACACACGCCCATGCCCTTGCCCGTGTGGCTCACACGTCTTGAGCACAAGTCCTT
** * * *
9367495 GTCCCTTCCCGTATGGTTCTAAATCATAAACAATGAGTT
66 GTCCCTAACCATATGGTTCTAAAGCATAAACAATAAGTT
* * * * *
9367534 ACACGGCCTAGACACACGCTCATGCCCTTGTCCGTGTGGCTCACATGGTC-TGGGCACAAG-CCT
1 ACACGGCCTGGACACACGCCCATGCCCTTGCCCGTGTGGCTCACA-CGTCTTGAGCACAAGTCCT
* * *
9367597 ATGTCCCTAACCATATGGTTCTCAAGCATAAATAGTAAGTT
65 -TGTCCCTAACCATATGGTTCTAAAGCATAAACAATAAGTT
* ** * *
9367638 ACAAGGCCTGGACACACGCCTTTGTCCTTACCCGTGTGAGC-CACAC
1 ACACGGCCTGGACACACGCCCATGCCCTTGCCCGTGTG-GCTCACAC
9367684 AACCTGGGCA
Statistics
Matches: 123, Mismatches: 24, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
103 3 0.02
104 115 0.93
105 5 0.04
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (104 bp):
ACACGGCCTGGACACACGCCCATGCCCTTGCCCGTGTGGCTCACACGTCTTGAGCACAAGTCCTT
GTCCCTAACCATATGGTTCTAAAGCATAAACAATAAGTT
Found at i:9369683 original size:17 final size:18
Alignment explanation
Indices: 9369663--9369697 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
9369653 AAAATAAAAA
9369663 AAATATAAAATTT-TTAT
1 AAATATAAAATTTATTAT
*
9369680 AAATTTAAAATTTATTAT
1 AAATATAAAATTTATTAT
9369698 TTTAAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
AAATATAAAATTTATTAT
Found at i:9373437 original size:20 final size:19
Alignment explanation
Indices: 9373390--9373446 Score: 71
Period size: 20 Copynumber: 3.0 Consensus size: 19
9373380 GATGACAAGG
*
9373390 ATGAGAAATGG-ATATGAG
1 ATGAGAAATGGAATATGAA
*
9373408 ATGGGAAATGGAATATGAA
1 ATGAGAAATGGAATATGAA
*
9373427 ATGATGAAATGAAATATGAA
1 ATGA-GAAATGGAATATGAA
9373447 TATTGAAATG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.30
19 9 0.27
20 14 0.42
ACGTcount: A:0.49, C:0.00, G:0.28, T:0.23
Consensus pattern (19 bp):
ATGAGAAATGGAATATGAA
Found at i:9373455 original size:19 final size:19
Alignment explanation
Indices: 9373412--9373458 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
9373402 TATGAGATGG
*
9373412 GAAATGGAATATGAAATGAT
1 GAAATGAAATATGAAAT-AT
9373432 GAAATGAAATATG-AATATT
1 GAAATGAAATATGAAATA-T
9373451 GAAATGAA
1 GAAATGAA
9373459 TTCATGTACT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 1 0.04
19 12 0.48
20 12 0.48
ACGTcount: A:0.53, C:0.00, G:0.21, T:0.26
Consensus pattern (19 bp):
GAAATGAAATATGAAATAT
Found at i:9379146 original size:31 final size:27
Alignment explanation
Indices: 9379088--9379141 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
9379078 GGTTTCCACG
9379088 TAAAATCTGTATGTTCTATTTTTCTTT
1 TAAAATCTGTATGTTCTATTTTTCTTT
9379115 TAAAATCTGTATGTTCTATTTTTCTTT
1 TAAAATCTGTATGTTCTATTTTTCTTT
9379142 CTTTTCTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.11, G:0.07, T:0.59
Consensus pattern (27 bp):
TAAAATCTGTATGTTCTATTTTTCTTT
Found at i:9388482 original size:34 final size:34
Alignment explanation
Indices: 9388424--9388488 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
9388414 TTTTAGTTAA
*
9388424 GGCCTTAACCCATTGCAGTAACAGTATCAGTGTG
1 GGCCTTAACCCATTGCAGTAACAGTAACAGTGTG
* *
9388458 GGCCTTAGCCCAATT-CAGTGACAGTAACAGT
1 GGCCTTAACCC-ATTGCAGTAACAGTAACAGT
9388489 ACAGATATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 24 0.89
35 3 0.11
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (34 bp):
GGCCTTAACCCATTGCAGTAACAGTAACAGTGTG
Found at i:9388983 original size:17 final size:18
Alignment explanation
Indices: 9388934--9388983 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
9388924 CTTAATGCGG
*
9388934 GCCCATGTGGGTCC-ACAC
1 GCCCGTGTGGG-CCTACAC
9388952 GCCCGTGTGGGCCTACAC
1 GCCCGTGTGGGCCTACAC
9388970 GCCCGTGT-GGCCTA
1 GCCCGTGTGGGCCTA
9388984 AATAGCCTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 8 0.27
18 22 0.73
ACGTcount: A:0.12, C:0.38, G:0.32, T:0.18
Consensus pattern (18 bp):
GCCCGTGTGGGCCTACAC
Found at i:9395118 original size:37 final size:37
Alignment explanation
Indices: 9395059--9395167 Score: 157
Period size: 37 Copynumber: 2.9 Consensus size: 37
9395049 AGCTCAGACG
*
9395059 AAATCTCCACACGA-AGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACAC-ATAGTCATCGGGTCTTACCCGGACA
9395096 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
* * * *
9395133 TACTCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGA
9395168 ATATATTTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
36 1 0.02
37 65 0.98
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
Found at i:9395449 original size:47 final size:47
Alignment explanation
Indices: 9395370--9395516 Score: 231
Period size: 47 Copynumber: 3.1 Consensus size: 47
9395360 TATATATATT
* * * *
9395370 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
9395417 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
9395464 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
9395511 TCACAT
1 TCACAT
9395517 AAAATCCTAA
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 90 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:9398952 original size:37 final size:37
Alignment explanation
Indices: 9398910--9398996 Score: 120
Period size: 37 Copynumber: 2.3 Consensus size: 37
9398900 ATATCAACGA
* * *
9398910 CATGCTTTTCATACTTTTGGTTTAACAATTTCAATGG
1 CATGCTTATCATACTTTCGGTTTAACAATCTCAATGG
* *
9398947 CATGCTTATCATCCTTTCGTTTTAACAATCTCAATGG
1 CATGCTTATCATACTTTCGGTTTAACAATCTCAATGG
9398984 CATGCTTAATCAT
1 CATGCTT-ATCAT
9398997 GCATTCATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 39 0.89
38 5 0.11
ACGTcount: A:0.25, C:0.21, G:0.11, T:0.43
Consensus pattern (37 bp):
CATGCTTATCATACTTTCGGTTTAACAATCTCAATGG
Found at i:9401013 original size:28 final size:27
Alignment explanation
Indices: 9400945--9401036 Score: 109
Period size: 28 Copynumber: 3.4 Consensus size: 27
9400935 GATATGACAT
** *
9400945 TGTGCTAAGTGAAATAAAACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGAA
9400972 --T-CTAAGTGAAATAAGTCCATGGTAA
1 TGTGCTAAGTGAAATAAGTCCATGG-AA
*
9400997 TGTGCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGTCCATGG-AA
9401025 TGTGCTAAGTGA
1 TGTGCTAAGTGA
9401037 GAAATTTCCC
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
24 19 0.34
25 2 0.04
27 1 0.02
28 34 0.61
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGAA
Found at i:9406928 original size:28 final size:28
Alignment explanation
Indices: 9406860--9406950 Score: 120
Period size: 28 Copynumber: 3.4 Consensus size: 28
9406850 GATATGACAT
*
9406860 TGTGCTAAGTGAAATAA-ACCATGGC-A
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
9406886 --T-ATAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
9406911 TGTGCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
9406939 TGTGCTAAGTGA
1 TGTGCTAAGTGA
9406951 GAAATTTCCC
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
23 12 0.21
24 8 0.14
25 1 0.02
27 1 0.02
28 34 0.61
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.26
Consensus pattern (28 bp):
TGTGCTAAGTGAAATAAGTCCATGGCAA
Found at i:9407029 original size:51 final size:51
Alignment explanation
Indices: 9406974--9407172 Score: 319
Period size: 51 Copynumber: 3.9 Consensus size: 51
9406964 TGAACCTTAG
* *
9406974 GAATAAAATAGCTTTGGACACAAGTGTGGCACTATGTGAAGGTCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
9407025 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
9407076 GAATAAAATAGCTTTGGACACAATTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
9407127 AAATAAAATAGGTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
9407173 CGTGTATCTG
Statistics
Matches: 138, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
50 1 0.01
51 137 0.99
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:9425552 original size:21 final size:21
Alignment explanation
Indices: 9425492--9425553 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
9425482 TCTTGAAACA
* **
9425492 GGGC-ACACGCCCGTGTGGAA
1 GGGCAACACACCCGTGTGGTC
9425512 GGGCAACACACCCGTGTGGTC
1 GGGCAACACACCCGTGTGGTC
9425533 GGGCAACACACCCGTGTGGTC
1 GGGCAACACACCCGTGTGGTC
9425554 ATTATAACAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
20 4 0.11
21 34 0.89
ACGTcount: A:0.19, C:0.32, G:0.35, T:0.13
Consensus pattern (21 bp):
GGGCAACACACCCGTGTGGTC
Found at i:9426963 original size:94 final size:94
Alignment explanation
Indices: 9426865--9427082 Score: 436
Period size: 94 Copynumber: 2.3 Consensus size: 94
9426855 CTCGAGGCTG
9426865 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCAATGGCATGTCCCAAACATG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCAATGGCATGTCCCAAACATG
9426930 GTTTTACACTAGCTCTCACAATGTGGCCA
66 GTTTTACACTAGCTCTCACAATGTGGCCA
9426959 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCAATGGCATGTCCCAAACATG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCAATGGCATGTCCCAAACATG
9427024 GTTTTACACTAGCTCTCACAATGTGGCCA
66 GTTTTACACTAGCTCTCACAATGTGGCCA
9427053 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
9427083 ACACAAATAA
Statistics
Matches: 124, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 124 1.00
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (94 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCAATGGCATGTCCCAAACATG
GTTTTACACTAGCTCTCACAATGTGGCCA
Found at i:9427005 original size:46 final size:45
Alignment explanation
Indices: 9426819--9427082 Score: 250
Period size: 46 Copynumber: 5.7 Consensus size: 45
9426809 CTTGTAGTCG
* * * * **
9426819 ATGCATATCCCAAACATTTCTTACACTAGCT-TGCATCTCGAGGCTG
1 ATGCATGTCCCAAACATGTCTTACACTAGCTCT-C-TCTCAATGCCA
*
9426865 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCA
1 ATGCATGTCCCAAACATGTCTTACACTAGCTCTC-TCTCAATGCCA
* *
9426911 ATGGCATGTCCCAAACATGGTTTTACACTAG--CTCTCACAATGTGGCCA
1 AT-GCATGTCCCAAACAT-GTCTTACACTAGCTCTCTCTCAA--T-GCCA
*
9426959 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCA
1 ATGCATGTCCCAAACATGTCTTACACTAGCTCTC-TCTCAATGCCA
* *
9427005 ATGGCATGTCCCAAACATGGTTTTACACTAG--CTCTCACAATGTGGCCA
1 AT-GCATGTCCCAAACAT-GTCTTACACTAGCTCTCTCTCAA--T-GCCA
*
9427053 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAAACATGTCTTACACTAGC
9427083 ACACAAATAA
Statistics
Matches: 184, Mismatches: 19, Indels: 29
0.79 0.08 0.12
Matches are distributed among these distances:
45 10 0.05
46 72 0.39
47 60 0.33
48 37 0.20
49 5 0.03
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (45 bp):
ATGCATGTCCCAAACATGTCTTACACTAGCTCTCTCTCAATGCCA
Found at i:9446191 original size:26 final size:26
Alignment explanation
Indices: 9446162--9446217 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
9446152 TACAAGGTCC
9446162 AAAACATACATTAAAATTGATATGGG
1 AAAACATACATTAAAATTGATATGGG
*
9446188 AAAACATACATTAAAATTGATCTGGG
1 AAAACATACATTAAAATTGATATGGG
9446214 AAAA
1 AAAA
9446218 TATAAAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.52, C:0.09, G:0.14, T:0.25
Consensus pattern (26 bp):
AAAACATACATTAAAATTGATATGGG
Found at i:9450994 original size:40 final size:40
Alignment explanation
Indices: 9450939--9451116 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
9450929 CGGATGATAA
* *
9450939 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
9450979 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
9451019 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
9451059 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
9451099 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
9451117 TACTTGGTTG
Statistics
Matches: 129, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
39 17 0.13
40 111 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:9454778 original size:21 final size:21
Alignment explanation
Indices: 9454737--9454778 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
9454727 GCAGCCAAAA
*
9454737 CATGCCAATTCATACACATTT
1 CATGCCAATTCATAAACATTT
*
9454758 CATGCC-ATTTATAAACTATTT
1 CATGCCAATTCATAAAC-ATTT
9454779 TCTTAACTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (21 bp):
CATGCCAATTCATAAACATTT
Found at i:9455721 original size:43 final size:43
Alignment explanation
Indices: 9455670--9455826 Score: 163
Period size: 43 Copynumber: 3.7 Consensus size: 43
9455660 TATCCTAGAT
* * * *
9455670 ATGGTCTTACATGTTATCACATATCGATGCCACTATCCCAGAC
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
* * *
9455713 AGGGTCTTACACGAAATCATA-ATACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATAT-CGATGCCAATGTCCCAGAC
* * * *
9455756 ATGGTCTTACACGTAATCACAAAACAATGCCAATGTCCCAGAA
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
* * * *
9455799 ATGGTCTTAGATGTAATCGCATCTCGAT
1 ATGGTCTTACACGTAATCACATATCGAT
9455827 AACCTAATGT
Statistics
Matches: 92, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
42 2 0.02
43 89 0.97
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:9459794 original size:43 final size:43
Alignment explanation
Indices: 9459762--9459848 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
9459752 ACGAAATTAT
* *
9459762 AATACGATGCCAATGTCCTAGACATGGTCTTACACATAATCAC
1 AATACAATGCCAATGTCCCAGACATGGTCTTACACATAATCAC
**
9459805 AATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAC
1 AATACAATGCCAATGTCCCAGACATGGTCTTACACATAATCAC
9459848 A
1 A
9459849 TCTCGTACCT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (43 bp):
AATACAATGCCAATGTCCCAGACATGGTCTTACACATAATCAC
Found at i:9466710 original size:27 final size:27
Alignment explanation
Indices: 9466679--9466856 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
9466669 TAAATTGTAC
9466679 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
9466706 TGCACTGAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
9466732 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
9466760 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
9466788 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
9466815 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
9466842 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
9466857 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:9466793 original size:82 final size:81
Alignment explanation
Indices: 9466680--9466835 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
9466670 AAATTGTACA
* * *
9466680 GCACTAAGTGTGCGATTTGACTATGTTGCACTGAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
9466744 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
9466761 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
9466826 TGCGAGTTGA
65 TGCGAATTGA
9466836 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:9466847 original size:82 final size:81
Alignment explanation
Indices: 9466676--9466856 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
9466666 GATTAAATTG
* * *
9466676 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTGAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
9466741 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
9466757 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
9466821 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
9466839 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
9466857 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:9472330 original size:30 final size:30
Alignment explanation
Indices: 9472296--9472356 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
9472286 TTCCCGAGCC
9472296 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
9472326 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
9472356 T
1 T
9472357 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:9480486 original size:49 final size:49
Alignment explanation
Indices: 9480361--9480664 Score: 508
Period size: 49 Copynumber: 6.3 Consensus size: 49
9480351 CCCTTCGGGA
* * * * *
9480361 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
9480408 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9480455 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9480504 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9480553 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9480602 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
9480651 CTTATCTCATATAT
1 CTTATCACATATAT
9480665 GCATGTTCAC
Statistics
Matches: 243, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 43 0.18
49 199 0.82
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:9481428 original size:58 final size:58
Alignment explanation
Indices: 9481335--9481446 Score: 206
Period size: 58 Copynumber: 1.9 Consensus size: 58
9481325 TCCTTTGCTT
*
9481335 ACACGGTTTCTTTTATAAGAAACTAGACTCATTAAGCTTTAATTTCATGTCTCATTCA
1 ACACGGTTTCTTTTATAAGAAACTAGACCCATTAAGCTTTAATTTCATGTCTCATTCA
*
9481393 ACACGGTTTCTTTTATAAGAAACTAGACCCCTTAAGCTTTAATTTCATGTCTCA
1 ACACGGTTTCTTTTATAAGAAACTAGACCCATTAAGCTTTAATTTCATGTCTCA
9481447 GTCAGACTGT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (58 bp):
ACACGGTTTCTTTTATAAGAAACTAGACCCATTAAGCTTTAATTTCATGTCTCATTCA
Found at i:9484227 original size:40 final size:40
Alignment explanation
Indices: 9484183--9484301 Score: 141
Period size: 40 Copynumber: 3.0 Consensus size: 40
9484173 GAATACACGT
* * *
9484183 CACCAGCATGATTGCTTTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTTTTCGGGACTTAGCCCGGATATAA
** * *
9484223 CACCAGCACGAATGCTCTTT-GGGGTTTAGCACGGATATAT
1 CACCAGCACGAATGCT-TTTCGGGACTTAGCCCGGATATAA
* *
9484263 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 CACCAGCACGAATGCTTTTCGGGACTTAGCCCGGATATA
9484302 TCACTCTCAA
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
39 2 0.03
40 60 0.92
41 3 0.05
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CACCAGCACGAATGCTTTTCGGGACTTAGCCCGGATATAA
Found at i:9484302 original size:40 final size:40
Alignment explanation
Indices: 9484195--9484306 Score: 152
Period size: 40 Copynumber: 2.8 Consensus size: 40
9484185 CCAGCATGAT
* * * *
9484195 TGCTTTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
9484235 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
9484275 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
9484307 CTCAATTCTC
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:9484420 original size:38 final size:38
Alignment explanation
Indices: 9484378--9484452 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
9484368 TAATTTTAAT
*
9484378 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
9484416 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
9484453 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:9490977 original size:56 final size:56
Alignment explanation
Indices: 9490891--9491002 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
9490881 ATCCAGTGAG
*
9490891 ATCGGAGGATAAATTGTAGCTAATTCGTCTAAGTCGATAAAATTGAGATTGGAAGA
1 ATCGGAAGATAAATTGTAGCTAATTCGTCTAAGTCGATAAAATTGAGATTGGAAGA
9490947 ATCGGAAGATAAATTGTAGCTAATTCGTCTAAGTCGATAAAATTGAGATTGGAAGA
1 ATCGGAAGATAAATTGTAGCTAATTCGTCTAAGTCGATAAAATTGAGATTGGAAGA
9491003 TAAAATGGAG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (56 bp):
ATCGGAAGATAAATTGTAGCTAATTCGTCTAAGTCGATAAAATTGAGATTGGAAGA
Found at i:9495601 original size:48 final size:48
Alignment explanation
Indices: 9495530--9495625 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
9495520 ACAAAAAGAA
9495530 ATATACATCACCACGTTTTGAGTTCGAGATCATTGATGGATGCTGAAC
1 ATATACATCACCACGTTTTGAGTTCGAGATCATTGATGGATGCTGAAC
* *
9495578 ATATACATCACCACGTTTTGAGTTCGTGATCATTGTTGGATGCTGAAC
1 ATATACATCACCACGTTTTGAGTTCGAGATCATTGATGGATGCTGAAC
9495626 CGGTGATCAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (48 bp):
ATATACATCACCACGTTTTGAGTTCGAGATCATTGATGGATGCTGAAC
Found at i:9495989 original size:40 final size:39
Alignment explanation
Indices: 9495945--9496079 Score: 130
Period size: 40 Copynumber: 3.4 Consensus size: 39
9495935 ACCAGCTTGG
*
9495945 CACCCAGTGCCTCATCGGATAATTCGAAGTAATAATTTGA
1 CACCCAGTGCCTCATCGGATAATCCGAAGTAATAA-TTGA
* * * * *
9495985 CACCCAGTGTCTCATCAGTTAAACCGAAGT-A-AATTGG
1 CACCCAGTGCCTCATCGGATAATCCGAAGTAATAATTGA
* * * *
9496022 CATCTAGTACCTCATCGAATTAATCCGAAGTAATAGATTGA
1 CACCCAGTGCCTCATCGGA-TAATCCGAAGTAATA-ATTGA
*
9496063 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
9496080 ACTCAAGGTC
Statistics
Matches: 72, Mismatches: 19, Indels: 7
0.73 0.19 0.07
Matches are distributed among these distances:
37 15 0.21
38 12 0.17
39 2 0.03
40 26 0.36
41 17 0.24
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAATCCGAAGTAATAATTGA
Found at i:9496891 original size:12 final size:12
Alignment explanation
Indices: 9496874--9496906 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
9496864 ATCTCTAGCT
9496874 TTTCTCTTTTTC
1 TTTCTCTTTTTC
9496886 TTTCTCTTTTTC
1 TTTCTCTTTTTC
9496898 TTT-TCTTTT
1 TTTCTCTTTT
9496907 CTATTTCGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTCTCTTTTTC
Found at i:9496903 original size:17 final size:17
Alignment explanation
Indices: 9496881--9496933 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
9496871 GCTTTTCTCT
9496881 TTTTCTTTCTCTTTTTC
1 TTTTCTTTCTCTTTTTC
*
9496898 TTTTCTTT-TCTATTTC
1 TTTTCTTTCTCTTTTTC
* *
9496914 GTTTCTTGCT-TTATTTC
1 TTTTCTTTCTCTT-TTTC
9496931 TTT
1 TTT
9496934 ATTTCTTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
16 14 0.48
17 15 0.52
ACGTcount: A:0.04, C:0.19, G:0.04, T:0.74
Consensus pattern (17 bp):
TTTTCTTTCTCTTTTTC
Found at i:9496918 original size:16 final size:17
Alignment explanation
Indices: 9496882--9496939 Score: 57
Period size: 16 Copynumber: 3.5 Consensus size: 17
9496872 CTTTTCTCTT
* *
9496882 TTTCTTTCTCTTTTTCT
1 TTTCTTTCTCTATTTCG
9496899 TTTCTTT-TCTATTTCG
1 TTTCTTTCTCTATTTCG
* *
9496915 TTTCTTGCTTTATTTC-
1 TTTCTTTCTCTATTTCG
*
9496931 TTTATTTCT
1 TTTCTTTCT
9496940 TTTTCTATTC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
16 20 0.59
17 14 0.41
ACGTcount: A:0.05, C:0.19, G:0.03, T:0.72
Consensus pattern (17 bp):
TTTCTTTCTCTATTTCG
Found at i:9496993 original size:8 final size:8
Alignment explanation
Indices: 9496971--9497013 Score: 68
Period size: 8 Copynumber: 5.2 Consensus size: 8
9496961 TTATATTTTA
9496971 ATAATAAT
1 ATAATAAT
9496979 AATAATAAT
1 -ATAATAAT
9496988 ATAATAAT
1 ATAATAAT
*
9496996 ATAATGAT
1 ATAATAAT
9497004 ATAATAAT
1 ATAATAAT
9497012 AT
1 AT
9497014 TTACTTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 24 0.75
9 8 0.25
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (8 bp):
ATAATAAT
Found at i:9497028 original size:3 final size:3
Alignment explanation
Indices: 9496969--9497012 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
9496959 CTTTATATTT
*
9496969 TAA TAA TAA TAA TAA TAA T-A TAA TAA T-A TAA TGA T-A TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
9497013 TTTACTTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
2 6 0.16
3 31 0.84
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:9507808 original size:49 final size:51
Alignment explanation
Indices: 9507678--9507810 Score: 162
Period size: 51 Copynumber: 2.6 Consensus size: 51
9507668 TCTATTGTGA
*
9507678 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACATC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACATC
* * * * * * *
9507729 GATCACGTGTGTAGTACCAAGTGCAGGCTACTACGTGTACCGGAT-A-ATT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACATC
* *
9507778 GGTCGCATGTGTAATACTAAGTGTAGGCTACTA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
9507811 TGCATACTAG
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
49 29 0.43
50 1 0.01
51 38 0.56
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACATC
Found at i:9511196 original size:21 final size:21
Alignment explanation
Indices: 9511172--9511212 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9511162 TGGGAATGTG
9511172 CCTTAGACACACGGCCGTGTT
1 CCTTAGACACACGGCCGTGTT
* *
9511193 CCTTAGCCACACGGTCGTGT
1 CCTTAGACACACGGCCGTGT
9511213 GAGTTTTCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.34, G:0.24, T:0.24
Consensus pattern (21 bp):
CCTTAGACACACGGCCGTGTT
Found at i:9513585 original size:47 final size:47
Alignment explanation
Indices: 9513507--9514197 Score: 935
Period size: 47 Copynumber: 14.6 Consensus size: 47
9513497 CCCTTCGGGA
* * * *
9513507 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
9513554 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
9513601 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
9513648 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
9513695 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
9513742 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
9513791 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
9513840 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
9513889 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
9513936 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
9513983 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
9514030 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
9514077 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
9514124 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
9514171 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
9514198 TATTCAAATA
Statistics
Matches: 622, Mismatches: 18, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
46 1 0.00
47 477 0.77
48 1 0.00
49 143 0.23
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:9537772 original size:62 final size:61
Alignment explanation
Indices: 9537675--9537812 Score: 181
Period size: 62 Copynumber: 2.2 Consensus size: 61
9537665 ATCAGCCAAA
* * * * *
9537675 TCGCACACTCAATGCTAAATCTTTGTAACGTATCGCACACTTAGTGCCGTTACATTAA-CATC
1 TCGCACACTTAGTGCTAAATCTTTGTAACGTATCGCACACTCAGTGCCGTCAC-TTAATC-CC
*
9537737 TCGCACACTTAGTGCTAAAATC-TTGTGACGTATCGCACACTCAGTGCCGTCACTTAATCCC
1 TCGCACACTTAGTGCT-AAATCTTTGTAACGTATCGCACACTCAGTGCCGTCACTTAATCCC
9537798 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
9537813 CATATTTCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
61 20 0.29
62 43 0.63
63 5 0.07
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (61 bp):
TCGCACACTTAGTGCTAAATCTTTGTAACGTATCGCACACTCAGTGCCGTCACTTAATCCC
Found at i:9540393 original size:33 final size:33
Alignment explanation
Indices: 9540335--9540406 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
9540325 GTTTGCATCT
*
9540335 CTGATACTGTACTAAATTGGGCTAAGG-CCACA
1 CTGATACTGTACCAAATTGGGCTAAGGCCCACA
9540367 CTGATACTGATACCATAA-TGGGCTAAGGCCCACA
1 CTGATACTG-TACCA-AATTGGGCTAAGGCCCACA
*
9540401 TTGATA
1 CTGATA
9540407 TTGCTACTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 9 0.26
33 14 0.40
34 12 0.34
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (33 bp):
CTGATACTGTACCAAATTGGGCTAAGGCCCACA
Done.