Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100348136
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3062571 characters in sequence are not A, C, G, or T
File 272 of 290
Found at i:93888875 original size:29 final size:28
Alignment explanation
Indices: 93888820--93888875 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
93888810 CTGGGGTTTT
* *
93888820 GGACACGGGTGTATCTAGGCCGTGTGAG
1 GGACACGGGCGTATCTAGGCCATGTGAG
* *
93888848 GGACACGGGCGTGTGCTTGGCCATGTGA
1 GGACACGGGCGTAT-CTAGGCCATGTGA
93888876 AAACCCCTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.16, C:0.20, G:0.43, T:0.21
Consensus pattern (28 bp):
GGACACGGGCGTATCTAGGCCATGTGAG
Found at i:93897053 original size:40 final size:39
Alignment explanation
Indices: 93896969--93897153 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
93896959 TTGAATGATG
* * *
93896969 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
93897008 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
*
93897049 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
93897088 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
93897127 AACCGGGCTATGACCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
93897154 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 36 0.29
40 79 0.64
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:93897105 original size:79 final size:81
Alignment explanation
Indices: 93896969--93897153 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
93896959 TTGAATGATG
* *
93896969 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
93897033 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
93897048 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
93897110 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
93897128 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
93897154 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:93897175 original size:79 final size:79
Alignment explanation
Indices: 93897022--93897176 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
93897012 GGACTAAGAT
* **
93897022 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
93897087 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
93897101 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
93897164 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
93897177 ATTCCGGAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.60
80 25 0.37
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:93899945 original size:43 final size:44
Alignment explanation
Indices: 93899907--93900059 Score: 147
Period size: 43 Copynumber: 3.5 Consensus size: 44
93899897 TGTGATATCG
93899907 TGTAAGACCACGTCTGGGATGTTGGCATCGATTTGTGATTTACA
1 TGTAAGACCACGTCTGGGATGTTGGCATCGATTTGTGATTTACA
* * * * * *
93899951 TGTAAGACCATGTCTAGGATATTGGCATC-ATATATGATTT-CG
1 TGTAAGACCACGTCTGGGATGTTGGCATCGATTTGTGATTTACA
* * *
93899993 TGTAAGACC-CTGTCTGGGACAG-TGGCTTCGGTATT-TGA-TTACA
1 TGTAAGACCAC-GTCTGGGA-TGTTGGCATCGAT-TTGTGATTTACA
*
93900036 TGTAAGACCACATCTGGGATGTTG
1 TGTAAGACCACGTCTGGGATGTTG
93900060 CTATTGTACG
Statistics
Matches: 86, Mismatches: 16, Indels: 15
0.74 0.14 0.13
Matches are distributed among these distances:
42 26 0.30
43 32 0.37
44 28 0.33
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.33
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGATGTTGGCATCGATTTGTGATTTACA
Found at i:93903258 original size:27 final size:27
Alignment explanation
Indices: 93903192--93903309 Score: 82
Period size: 27 Copynumber: 4.4 Consensus size: 27
93903182 CGCATAATAG
* *
93903192 AATGAAAGCCCTTGTGGAAATCTATGA
1 AATGGAAGCCTTTGTGGAAATCTATGA
* * *
93903219 AATGGATGTCTTTGTGGCAATCTATGA
1 AATGGAAGCCTTTGTGGAAATCTATGA
* * **
93903246 AATTGAAGCCTTTTTGGTGTAT-T-TGA
1 AATGGAAGCCTTTGTGG-AAATCTATGA
* * *
93903272 AAAGGAAGCCTTTGTGGCATAT-T-CGA
1 AATGGAAGCCTTTGTGG-AAATCTATGA
93903298 AATGGAAGCCTT
1 AATGGAAGCCTT
93903310 CATGGAAACT
Statistics
Matches: 72, Mismatches: 18, Indels: 3
0.77 0.19 0.03
Matches are distributed among these distances:
26 34 0.47
27 36 0.50
28 2 0.03
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.33
Consensus pattern (27 bp):
AATGGAAGCCTTTGTGGAAATCTATGA
Found at i:93903279 original size:26 final size:26
Alignment explanation
Indices: 93903250--93903309 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
93903240 CTATGAAATT
* ** *
93903250 GAAGCCTTTTTGGTGTATTTGAAAAG
1 GAAGCCTTTGTGGCATATTCGAAAAG
*
93903276 GAAGCCTTTGTGGCATATTCGAAATG
1 GAAGCCTTTGTGGCATATTCGAAAAG
93903302 GAAGCCTT
1 GAAGCCTT
93903310 CATGGAAACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (26 bp):
GAAGCCTTTGTGGCATATTCGAAAAG
Found at i:93906622 original size:20 final size:21
Alignment explanation
Indices: 93906586--93906633 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
93906576 ATTTTGATAT
*
93906586 ACATGATTTGATATGATATGC
1 ACATGATATGATATGATATGC
93906607 ACATGATATG-TATGATATGC
1 ACATGATATGATATGATATGC
93906627 ACATGAT
1 ACATGAT
93906634 GTATTCATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (21 bp):
ACATGATATGATATGATATGC
Found at i:93906758 original size:24 final size:25
Alignment explanation
Indices: 93906681--93906775 Score: 165
Period size: 25 Copynumber: 3.8 Consensus size: 25
93906671 GAGGAAGTGC
93906681 AAAAGGGCTTTGCCCCAGTTTACCGA
1 AAAAGGGCTTTGCCCCAGTTTACC-A
93906707 AAAA-GGCTTTGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
93906731 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
93906756 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
93906776 ATTAAAAGAG
Statistics
Matches: 67, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
24 5 0.07
25 58 0.87
26 4 0.06
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:93906788 original size:24 final size:24
Alignment explanation
Indices: 93906680--93906788 Score: 139
Period size: 25 Copynumber: 4.4 Consensus size: 24
93906670 GGAGGAAGTG
* *
93906680 CAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAAGGCTTTGCCCCAGTTTAT
*
93906704 CGAAAAAGGCTTTGCCCCAGTTTAC
1 C-AAAAAGGCTTTGCCCCAGTTTAT
93906729 CAAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAA-GGCTTTGCCCCAGTTTAT
93906754 CAAAAAGGGCTTTGCCCCAG-TTAT
1 CAAAAA-GGCTTTGCCCCAGTTTAT
*
93906778 TAAAAGAGGCT
1 CAAAA-AGGCT
93906789 AGGCCTCCAG
Statistics
Matches: 79, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
24 18 0.23
25 61 0.77
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (24 bp):
CAAAAAGGCTTTGCCCCAGTTTAT
Found at i:93907058 original size:30 final size:31
Alignment explanation
Indices: 93907022--93907080 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
93907012 TGATATGAGT
93907022 TGTGAATTAT-AAAAGGCTTCGGCCCAGTAA
1 TGTGAATTATGAAAAGGCTTCGGCCCAGTAA
* *
93907052 TGTGAATTATGAAGAGGCTTTGGCCCAGT
1 TGTGAATTATGAAAAGGCTTCGGCCCAGT
93907081 TTATGTTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (31 bp):
TGTGAATTATGAAAAGGCTTCGGCCCAGTAA
Found at i:93925398 original size:30 final size:30
Alignment explanation
Indices: 93925320--93925399 Score: 101
Period size: 30 Copynumber: 2.7 Consensus size: 30
93925310 TATCGTATCA
* * *
93925320 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
93925350 TAT-TCTGGATTTCTTTATTCTGGGAT-TCTC
1 TATCT-TGGATTTCTTTATTCT-GGATCTCTC
93925380 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
93925400 GGTTTTCTTG
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
29 1 0.02
30 38 0.86
31 5 0.11
ACGTcount: A:0.12, C:0.17, G:0.15, T:0.55
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:93925406 original size:14 final size:15
Alignment explanation
Indices: 93925329--93925408 Score: 85
Period size: 15 Copynumber: 5.4 Consensus size: 15
93925319 ATATCTTGGG
*
93925329 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
93925344 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
93925359 TTTCTTTATTCTGGGA
1 TTTCTTTATTCT-GGA
*
93925375 -TTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
93925389 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
93925403 TTTCTT
1 TTTCTT
93925409 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
14 13 0.24
15 37 0.67
16 5 0.09
ACGTcount: A:0.11, C:0.17, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:93936099 original size:27 final size:27
Alignment explanation
Indices: 93935606--93936078 Score: 687
Period size: 27 Copynumber: 17.6 Consensus size: 27
93935596 CCGAAATATA
* *
93935606 TGTAGGCTAGCATTACTGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
*
93935633 TGTA-GGTAGAATTACCGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
* *
93935659 TATAGGGTAAAATTACTGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
* *
93935686 TGTAAGGTAGAATTATTGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
* *
93935713 TGTAAGGTAGAATTACCGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
* * *
93935740 TGTAAGGTAGAATTACTAAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCC
* *
93935767 TGTAAGATAGAATTACTGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
*
93935794 TGTAGGGTAGAATTACTAAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
* *
93935821 TGTAAGGTAGAATTACCGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
* *
93935848 TATAGGGTAGAATTACTGAAATAACCC
1 TGTAGGGTAGAATTACTGAAATACCCC
93935875 TGTAGGGTAGAATTACTGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
*
93935902 TGTAGGGTAGAATTACTAAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
* *
93935929 TGTAAGGTAGAATTACCGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
* *
93935956 TATAGGGTAGAATTACTGAAATAACCC
1 TGTAGGGTAGAATTACTGAAATACCCC
93935983 TGTAGGGTAGAATTACTGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
** *
93936010 TGTAGGGTAGAATTACCAAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCC
*
93936037 TGTAGGGTAGAAATACTGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
93936064 TGTAGGGTAGAATTA
1 TGTAGGGTAGAATTA
93936079 TCGAGATACC
Statistics
Matches: 397, Mismatches: 48, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
26 22 0.06
27 375 0.94
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCC
Found at i:93936486 original size:22 final size:22
Alignment explanation
Indices: 93936454--93936512 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
93936444 CTCGTTATCG
*
93936454 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * *
93936476 ATGGCTTTGTGCCATCCTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
93936498 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
93936513 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:93936700 original size:27 final size:27
Alignment explanation
Indices: 93936670--93936777 Score: 105
Period size: 27 Copynumber: 4.0 Consensus size: 27
93936660 ATTTTGTTAA
* *
93936670 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTATGCCACAATATCTGATTCTG
93936697 GTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTATGCCAC-AATATCTGATTCTG
* * *
93936724 ATGGCTCTGCCACAATATCTG-TATCTA
1 GTGGCTATGCCACAATATCTGAT-TCTG
* * *
93936751 GTGACTCTGTCACAATATCTG-TTCTG
1 GTGGCTATGCCACAATATCTGATTCTG
93936777 G
1 G
93936778 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 12 0.17
27 51 0.74
28 6 0.09
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGATTCTG
Found at i:93936765 original size:54 final size:53
Alignment explanation
Indices: 93936671--93936776 Score: 124
Period size: 54 Copynumber: 2.0 Consensus size: 53
93936661 TTTTGTTAAG
* * * *
93936671 TGGCTTTGCCACATTATCTGATTCTGGTGGCTATGCCACAAATATCTATTCTGA
1 TGGCTCTGCCACAATATCTGATTCTAGTGACTATGCCAC-AATATCTATTCTGA
* * *
93936725 TGGCTCTGCCACAATATCTG-TATCTAGTGACTCTGTCACAATATCTGTTCTG
1 TGGCTCTGCCACAATATCTGAT-TCTAGTGACTATGCCACAATATCTATTCTG
93936777 GCAGCCATGC
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
53 13 0.30
54 31 0.70
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.37
Consensus pattern (53 bp):
TGGCTCTGCCACAATATCTGATTCTAGTGACTATGCCACAATATCTATTCTGA
Found at i:93944627 original size:40 final size:40
Alignment explanation
Indices: 93944580--93944677 Score: 171
Period size: 40 Copynumber: 2.5 Consensus size: 40
93944570 ACTATCTCAA
93944580 ATCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCG-
1 ATCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGT
*
93944619 ATCTGCACAATAAGTGCCATATATAGCCGAAGCTATGTCGT
1 ATC-GCACACTAAGTGCCATATATAGCCGAAGCTATGTCGT
93944660 ATCGCACACTAAGTGCCA
1 ATCGCACACTAAGTGCCA
93944678 CAAATAACCC
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
39 3 0.05
40 49 0.89
41 3 0.05
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (40 bp):
ATCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGT
Found at i:93950324 original size:46 final size:46
Alignment explanation
Indices: 93950274--93950534 Score: 286
Period size: 46 Copynumber: 5.6 Consensus size: 46
93950264 TGGTTGAGCA
93950274 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
93950320 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
93950365 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
93950413 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
93950458 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
93950506 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
93950535 GTGAAATGTA
Statistics
Matches: 177, Mismatches: 20, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.05
45 6 0.03
46 85 0.48
47 56 0.32
48 6 0.03
50 8 0.05
51 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:93950389 original size:47 final size:47
Alignment explanation
Indices: 93950320--93950582 Score: 285
Period size: 47 Copynumber: 5.6 Consensus size: 47
93950310 GATGCGAATG
93950320 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
* * * * *
93950367 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCA
93950411 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
* * * * *
93950460 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCA
93950504 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
*
93950553 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCG
93950583 CTTATGGGCG
Statistics
Matches: 177, Mismatches: 21, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
43 2 0.01
44 6 0.03
45 4 0.02
46 62 0.35
47 91 0.51
48 4 0.02
49 6 0.03
50 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
Found at i:93950430 original size:93 final size:93
Alignment explanation
Indices: 93950271--93950589 Score: 620
Period size: 93 Copynumber: 3.4 Consensus size: 93
93950261 GGATGGTTGA
*
93950271 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
93950336 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
93950364 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
93950429 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
93950457 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
93950522 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
93950550 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93950590 GCGGGTTACA
Statistics
Matches: 224, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 224 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:93953257 original size:26 final size:26
Alignment explanation
Indices: 93953226--93953294 Score: 129
Period size: 26 Copynumber: 2.7 Consensus size: 26
93953216 CATTGTGACC
93953226 CACAACTCGTGTGAGCAGGCCCATTT
1 CACAACTCGTGTGAGCAGGCCCATTT
*
93953252 CACAACTAGTGTGAGCAGGCCCATTT
1 CACAACTCGTGTGAGCAGGCCCATTT
93953278 CACAACTCGTGTGAGCA
1 CACAACTCGTGTGAGCA
93953295 TTGATGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (26 bp):
CACAACTCGTGTGAGCAGGCCCATTT
Found at i:93957134 original size:29 final size:28
Alignment explanation
Indices: 93957101--93957519 Score: 300
Period size: 29 Copynumber: 14.6 Consensus size: 28
93957091 GATTGTCGAC
* *
93957101 TATGAAAAGGGATAGTGACGACCATCAA
1 TATGAAAAGGGATGGTGATGACCATCAA
*
93957129 CTATGAAAAGGGATGGT-AT---C--GAA
1 -TATGAAAAGGGATGGTGATGACCATCAA
** **
93957152 TATGAAAAGGGATAATTTTGACCATCAA
1 TATGAAAAGGGATGGTGATGACCATCAA
* ***
93957180 TTATGAAAAGGGATGATGGCAACCATCAA
1 -TATGAAAAGGGATGGTGATGACCATCAA
*
93957209 CTATGAAAAGGGATGGTGATGACCATTGAA
1 -TATGAAAAGGGATGGTGATGACCA-TCAA
*
93957239 TATGAAAAGGGATGGTGACGACGACCATCAA
1 TATGAAAAGGGATGGT---GATGACCATCAA
*
93957270 CTATGAAAAGGGATGGTGATGACCATTGAA
1 -TATGAAAAGGGATGGTGATGACCA-TCAA
*
93957300 TATGAAAAGGGATGGTGACGACGACCATCAA
1 TATGAAAAGGGATGGT---GATGACCATCAA
* *
93957331 CTATGAAAAGGGATGGTGACGACTATCGAA
1 -TATGAAAAGGGATGGTGATGACCATC-AA
* ** * ** *
93957361 TATGAAAAGGGATAGTTTTAATTATTGAA
1 TATGAAAAGGGATGGTGATGACCA-TCAA
**
93957390 TATGAAAAGGGATTTTGATGACCATCAA
1 TATGAAAAGGGATGGTGATGACCATCAA
* * *
93957418 CTATGAAAAGGGACGGTGATGACCAATGAT
1 -TATGAAAAGGGATGGTGATGACC-ATCAA
* *
93957448 TAATGAAAAGGAATGGT-TTCGACCATCAAA
1 T-ATGAAAAGGGATGGTGAT-GACCATC-AA
93957478 TATGAAAAGGGAT-G-G-TGACCATCGAA
1 TATGAAAAGGGATGGTGATGACCATC-AA
93957504 TATGAAAAGGGATGGT
1 TATGAAAAGGGATGGT
93957520 TTCGACCATT
Statistics
Matches: 311, Mismatches: 52, Indels: 55
0.74 0.12 0.13
Matches are distributed among these distances:
22 14 0.05
23 3 0.01
25 1 0.00
26 23 0.07
27 2 0.01
28 7 0.02
29 178 0.57
30 31 0.10
31 6 0.02
32 46 0.15
ACGTcount: A:0.39, C:0.11, G:0.27, T:0.23
Consensus pattern (28 bp):
TATGAAAAGGGATGGTGATGACCATCAA
Found at i:93957177 original size:51 final size:51
Alignment explanation
Indices: 93957096--93957194 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
93957086 GTTTCGATTG
* *
93957096 TCGACTATGAAAAGGGATAGTGACGACCATCAACTATGAAAAGGGATGGTA
1 TCGAATATGAAAAGGGATAATGACGACCATCAACTATGAAAAGGGATGGTA
*** *
93957147 TCGAATATGAAAAGGGATAATTTTGACCATCAATTATGAAAAGGGATG
1 TCGAATATGAAAAGGGATAATGACGACCATCAACTATGAAAAGGGATG
93957195 ATGGCAACCA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.40, C:0.11, G:0.25, T:0.23
Consensus pattern (51 bp):
TCGAATATGAAAAGGGATAATGACGACCATCAACTATGAAAAGGGATGGTA
Found at i:93957282 original size:61 final size:61
Alignment explanation
Indices: 93957181--93957373 Score: 320
Period size: 61 Copynumber: 3.2 Consensus size: 61
93957171 GACCATCAAT
* *
93957181 TATGAAAAGGGATGATG--G-CAACCATCAACTATGAAAAGGGATGGTGATGACCATTGAA
1 TATGAAAAGGGATGGTGACGACGACCATCAACTATGAAAAGGGATGGTGATGACCATTGAA
93957239 TATGAAAAGGGATGGTGACGACGACCATCAACTATGAAAAGGGATGGTGATGACCATTGAA
1 TATGAAAAGGGATGGTGACGACGACCATCAACTATGAAAAGGGATGGTGATGACCATTGAA
* * *
93957300 TATGAAAAGGGATGGTGACGACGACCATCAACTATGAAAAGGGATGGTGACGACTATCGAA
1 TATGAAAAGGGATGGTGACGACGACCATCAACTATGAAAAGGGATGGTGATGACCATTGAA
93957361 TATGAAAAGGGAT
1 TATGAAAAGGGAT
93957374 AGTTTTAATT
Statistics
Matches: 127, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
58 16 0.13
60 1 0.01
61 110 0.87
ACGTcount: A:0.39, C:0.12, G:0.29, T:0.20
Consensus pattern (61 bp):
TATGAAAAGGGATGGTGACGACGACCATCAACTATGAAAAGGGATGGTGATGACCATTGAA
Found at i:93957304 original size:90 final size:89
Alignment explanation
Indices: 93957171--93957519 Score: 301
Period size: 90 Copynumber: 3.9 Consensus size: 89
93957161 GGATAATTTT
* ** *
93957171 GACCATCAATTATGAAAAGGGATGATGGCAACCA-TCAACTATGAAAAGGGATGGTGATGACCAT
1 GACCATCAATTATGAAAAGGGATGGTGTTAACCATTGAA-TATGAAAAGGGATGGTGATGACCA-
*
93957235 TGAA-TATGAAAAGGGATGGTGACGAC
64 TCAACTATGAAAAGGGATGGTGA-GAC
* * * *
93957261 GACCATCAACTATGAAAAGGGATGGTGATGACCATTGAATATGAAAAGGGATGGTGACGACGACC
1 GACCATCAATTATGAAAAGGGATGGTGTTAACCATTGAATATGAAAAGGGATGGT---GATGACC
93957326 ATCAACTATGAAAAGGGATGGT--GAC
63 ATCAACTATGAAAAGGGATGGTGAGAC
* * * ** **
93957351 GACTATCGAA-TATGAAAAGGGATAGTTTTAATTATTGAATATGAAAAGGGATTTTGATGACCAT
1 GACCATC-AATTATGAAAAGGGATGGTGTTAACCATTGAATATGAAAAGGGATGGTGATGACCAT
*
93957415 CAACTATGAAAAGGGACGGTGATGAC
65 CAACTATGAAAAGGGATGGTGA-GAC
* * * * **
93957441 --CAAT-GATTAATGAAAAGGAATGGT-TTCGACCATCAAATATGAAAAGGGAT-G-G-TGACCA
1 GACCATCAATT-ATGAAAAGGGATGGTGTT-AACCATTGAATATGAAAAGGGATGGTGATGACCA
93957499 TCGAA-TATGAAAAGGGATGGT
64 TC-AACTATGAAAAGGGATGGT
93957520 TTCGACCATT
Statistics
Matches: 216, Mismatches: 30, Indels: 31
0.78 0.11 0.11
Matches are distributed among these distances:
85 23 0.11
86 4 0.02
87 30 0.14
88 34 0.16
90 94 0.44
91 5 0.02
92 3 0.01
93 23 0.11
ACGTcount: A:0.39, C:0.12, G:0.27, T:0.22
Consensus pattern (89 bp):
GACCATCAATTATGAAAAGGGATGGTGTTAACCATTGAATATGAAAAGGGATGGTGATGACCATC
AACTATGAAAAGGGATGGTGAGAC
Found at i:93957472 original size:59 final size:55
Alignment explanation
Indices: 93957409--93957543 Score: 155
Period size: 55 Copynumber: 2.4 Consensus size: 55
93957399 GGATTTTGAT
* *
93957409 GACCATCAACTATGAAAAGGGACGGTGATGACCAAT-GATTAATGAAAAGGAATGGTTTC
1 GACCATCAAATATGAAAAGGGA---TGATGACC-ATCGAAT-ATGAAAAGGAATGGTTTC
* *
93957468 GACCATCAAATATGAAAAGGGATGGTGACCATCGAATATGAAAAGGGATGGTTTC
1 GACCATCAAATATGAAAAGGGATGATGACCATCGAATATGAAAAGGAATGGTTTC
**
93957523 GACCATTGAATATGGAAAAGG
1 GACCATCAAATAT-GAAAAGG
93957544 ATGGTTTCAA
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
55 30 0.44
56 17 0.25
59 21 0.31
ACGTcount: A:0.39, C:0.13, G:0.27, T:0.21
Consensus pattern (55 bp):
GACCATCAAATATGAAAAGGGATGATGACCATCGAATATGAAAAGGAATGGTTTC
Found at i:93960467 original size:17 final size:18
Alignment explanation
Indices: 93960433--93960468 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
93960423 TGAATTTCTA
93960433 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
93960451 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
93960468 T
1 T
93960469 AACTCATCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Found at i:93967692 original size:13 final size:13
Alignment explanation
Indices: 93967674--93967700 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
93967664 CGTGTGGGTG
93967674 CACACGGCTGTGT
1 CACACGGCTGTGT
93967687 CACACGGCTGTGT
1 CACACGGCTGTGT
93967700 C
1 C
93967701 TATCTTCGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.30, T:0.22
Consensus pattern (13 bp):
CACACGGCTGTGT
Found at i:93968976 original size:12 final size:12
Alignment explanation
Indices: 93968959--93968983 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93968949 AACTCCCTAG
93968959 ATCTATAACACA
1 ATCTATAACACA
93968971 ATCTATAACACA
1 ATCTATAACACA
93968983 A
1 A
93968984 GGAAACAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (12 bp):
ATCTATAACACA
Found at i:93969534 original size:39 final size:39
Alignment explanation
Indices: 93969508--93969665 Score: 262
Period size: 39 Copynumber: 4.1 Consensus size: 39
93969498 GTCCAGCACG
* *
93969508 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTTGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
*
93969547 TAGCCTGCGGACATGAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
* *
93969586 TAGCCTGCAGACCTGAAGTCCGGATATAATTCTCGCTTA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
*
93969625 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCGTA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
93969664 TA
1 TA
93969666 TATATTCACA
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (39 bp):
TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
Found at i:93972844 original size:37 final size:37
Alignment explanation
Indices: 93972789--93973012 Score: 376
Period size: 37 Copynumber: 6.1 Consensus size: 37
93972779 GGAAATATAT
93972789 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
93972826 TCCGGGTAAGACCTGATGACTACGTGTGAAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
93972863 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
93972900 TCCGGGTAAGACCTGATGACTACGTGTGAAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
93972937 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
93972974 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
93973011 TC
1 TC
93973013 TGAGCTAAAG
Statistics
Matches: 176, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 176 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:93973892 original size:32 final size:32
Alignment explanation
Indices: 93973856--93973925 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
93973846 AATTTAACCC
*
93973856 GAATTACCCATTCAACTAAATGTCATATAATT
1 GAATTAACCATTCAACTAAATGTCATATAATT
93973888 GAATTAACCATTCAACTAAATGTCATATAATT
1 GAATTAACCATTCAACTAAATGTCATATAATT
*
93973920 AAATTA
1 GAATTA
93973926 TTTACCACAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.16, G:0.06, T:0.34
Consensus pattern (32 bp):
GAATTAACCATTCAACTAAATGTCATATAATT
Found at i:93981776 original size:39 final size:39
Alignment explanation
Indices: 93981745--93981902 Score: 210
Period size: 39 Copynumber: 4.1 Consensus size: 39
93981735 TATATGTCCA
* *
93981745 GCACGTAGCCTGCGGACCTAAAGTCCGGATATAATTCTC
1 GCACATAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
* * *
93981784 GCATATAGCCTGCGGACATGAAGTCCGTATATAATTCTC
1 GCACATAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
* *
93981823 GC-CTATAGCCTGCAGACTTGAAGTCCGGATATAATTCTC
1 GCAC-ATAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
** *
93981862 GCTTATAGCCTGCGGACCTGAAGTCCGGATATAACTCTC
1 GCACATAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
93981901 GC
1 GC
93981903 GTATATATGT
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 104 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
GCACATAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
Found at i:93981833 original size:78 final size:78
Alignment explanation
Indices: 93981750--93981907 Score: 244
Period size: 78 Copynumber: 2.0 Consensus size: 78
93981740 GTCCAGCACG
* *
93981750 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATATAGCCTGCGGACATGAAGTCCGTATA
1 TAGCCTGCAGACCTAAAGTCCGGATATAATTCTCGCATATAGCCTGCGGACATGAAGTCCGGATA
*
93981815 TAATTCTCGCCTA
66 TAACTCTCGCCTA
* * * *
93981828 TAGCCTGCAGACTTGAAGTCCGGATATAATTCTCGCTTATAGCCTGCGGACCTGAAGTCCGGATA
1 TAGCCTGCAGACCTAAAGTCCGGATATAATTCTCGCATATAGCCTGCGGACATGAAGTCCGGATA
*
93981893 TAACTCTCGCGTA
66 TAACTCTCGCCTA
93981906 TA
1 TA
93981908 TATGTTCACA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 72 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (78 bp):
TAGCCTGCAGACCTAAAGTCCGGATATAATTCTCGCATATAGCCTGCGGACATGAAGTCCGGATA
TAACTCTCGCCTA
Found at i:93984282 original size:39 final size:39
Alignment explanation
Indices: 93984238--93984475 Score: 413
Period size: 39 Copynumber: 6.1 Consensus size: 39
93984228 AATTATGTTA
* *
93984238 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATTCATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
93984277 CCAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
93984316 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATTCATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
93984355 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATTCATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
93984394 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
93984433 CCAGCGCGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
93984472 CCAG
1 CCAG
93984476 TGTCTTGCTT
Statistics
Matches: 191, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 191 1.00
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:93991035 original size:39 final size:39
Alignment explanation
Indices: 93990991--93991111 Score: 174
Period size: 39 Copynumber: 3.1 Consensus size: 39
93990981 AATTATGTTG
93990991 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
93991030 CCAGCACGAAGCCTGCGGGACTTTACCCCGGATACGTTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
93991069 CCAGCATGAAA-CCTGC-GGATCTTTAGCCCGGATACATTT
1 CCAGCA-CAAAGCCTGCGGGA-CTTTAGCCCGGATACATTT
93991108 CCAG
1 CCAG
93991112 TGTCTTGCTT
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
38 3 0.04
39 68 0.93
40 2 0.03
ACGTcount: A:0.24, C:0.31, G:0.23, T:0.21
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:93996574 original size:38 final size:39
Alignment explanation
Indices: 93996502--93996635 Score: 98
Period size: 38 Copynumber: 3.5 Consensus size: 39
93996492 ACCAGTTTGG
* ** *
93996502 CACCCAGTGCCTCATCGAA--TAGTTTGAAGCAAAGTTGA
1 CACCCAGTGTCTCATCGAACCTAG-CCGAAGTAAAGTTGA
* *
93996540 CACCCAGTGTCTCATCG-GCCTAGCCGAAGTAAAG-TGG
1 CACCCAGTGTCTCATCGAACCTAGCCGAAGTAAAGTTGA
* * * * *
93996577 TACCCAGTATCTCATCGAATCTATCCGAAGTAAAATAGTGA
1 CACCCAGTGTCTCATCGAACCTAGCCGAAGTAAAGT--TGA
93996618 CACCCTA-TGTCTCATCGA
1 CACCC-AGTGTCTCATCGA
93996636 CTCGAGGTCG
Statistics
Matches: 74, Mismatches: 15, Indels: 11
0.74 0.15 0.11
Matches are distributed among these distances:
37 17 0.23
38 37 0.50
39 3 0.04
41 16 0.22
42 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (39 bp):
CACCCAGTGTCTCATCGAACCTAGCCGAAGTAAAGTTGA
Found at i:93999630 original size:40 final size:40
Alignment explanation
Indices: 93999575--93999687 Score: 190
Period size: 40 Copynumber: 2.8 Consensus size: 40
93999565 CTCACAAGAT
*
93999575 GTAACTACTTGGGCTGCTCACACAAGCTGACAGTCAGGAC
1 GTAACTACTTGGGCTGCTTACACAAGCTGACAGTCAGGAC
93999615 GTAACTACTTGGGCTGCTTACACAAGCTGACAGTCAGGAC
1 GTAACTACTTGGGCTGCTTACACAAGCTGACAGTCAGGAC
* * *
93999655 GTAACTACTCGGGCTGCTTGCACAAGTTGACAG
1 GTAACTACTTGGGCTGCTTACACAAGCTGACAG
93999688 GTACTCGCAA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.27, C:0.26, G:0.26, T:0.22
Consensus pattern (40 bp):
GTAACTACTTGGGCTGCTTACACAAGCTGACAGTCAGGAC
Found at i:94004026 original size:53 final size:53
Alignment explanation
Indices: 94003946--94004053 Score: 207
Period size: 53 Copynumber: 2.0 Consensus size: 53
94003936 AATAAACCGA
*
94003946 GTTAGCTTTTTGGCTCTAGGTGTATACCAAACAATGCCTTAGGTCATCTCTAG
1 GTTAGCTTTTTGGCTCTAGGTGTATACCAAACAATGCCTTAGGTCATCCCTAG
94003999 GTTAGCTTTTTGGCTCTAGGTGTATACCAAACAATGCCTTAGGTCATCCCTAG
1 GTTAGCTTTTTGGCTCTAGGTGTATACCAAACAATGCCTTAGGTCATCCCTAG
94004052 GT
1 GT
94004054 ATCTCAACAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.35
Consensus pattern (53 bp):
GTTAGCTTTTTGGCTCTAGGTGTATACCAAACAATGCCTTAGGTCATCCCTAG
Found at i:94004394 original size:17 final size:17
Alignment explanation
Indices: 94004372--94004407 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
94004362 ATAAAAATCT
*
94004372 CTATGTTACGCCCCACA
1 CTATGTTACCCCCCACA
94004389 CTATGTTACCCCCCACA
1 CTATGTTACCCCCCACA
94004406 CT
1 CT
94004408 TTTGATAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.44, G:0.08, T:0.25
Consensus pattern (17 bp):
CTATGTTACCCCCCACA
Found at i:94004742 original size:15 final size:15
Alignment explanation
Indices: 94004719--94004759 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
94004709 TCTCCTCTTC
*
94004719 TTCTGCCTCTTCACT
1 TTCTTCCTCTTCACT
*
94004734 TTCTTCCTCTTCATT
1 TTCTTCCTCTTCACT
*
94004749 TTCCTCCTCTT
1 TTCTTCCTCTT
94004760 TTTCTTCTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.05, C:0.39, G:0.02, T:0.54
Consensus pattern (15 bp):
TTCTTCCTCTTCACT
Found at i:94014738 original size:15 final size:15
Alignment explanation
Indices: 94014718--94014772 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 15
94014708 TTAATTGACA
94014718 TTTTTCTTCATAAAC
1 TTTTTCTTCATAAAC
94014733 TTTTTCTTCAGT---C
1 TTTTTCTTCA-TAAAC
***
94014746 CCATTCTTCATAAAC
1 TTTTTCTTCATAAAC
94014761 TTTTTCTTCATA
1 TTTTTCTTCATA
94014773 GATTTCAACA
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
12 1 0.03
13 8 0.27
15 20 0.67
16 1 0.03
ACGTcount: A:0.22, C:0.24, G:0.02, T:0.53
Consensus pattern (15 bp):
TTTTTCTTCATAAAC
Found at i:94015955 original size:48 final size:48
Alignment explanation
Indices: 94015884--94015983 Score: 182
Period size: 48 Copynumber: 2.1 Consensus size: 48
94015874 GCGTCATTAA
*
94015884 GGTTGCAAGGGATCCTGGGTTCAAGTCTTGGCTCTTACAATTTATTTT
1 GGTTGCAAGGGAGCCTGGGTTCAAGTCTTGGCTCTTACAATTTATTTT
*
94015932 GGTTGCAAGGGAGCTTGGGTTCAAGTCTTGGCTCTTACAATTTATTTT
1 GGTTGCAAGGGAGCCTGGGTTCAAGTCTTGGCTCTTACAATTTATTTT
94015980 GGTT
1 GGTT
94015984 TTACTTTTAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.18, C:0.15, G:0.27, T:0.40
Consensus pattern (48 bp):
GGTTGCAAGGGAGCCTGGGTTCAAGTCTTGGCTCTTACAATTTATTTT
Found at i:94016562 original size:28 final size:28
Alignment explanation
Indices: 94016522--94016585 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
94016512 TGGGAAGTAG
*
94016522 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
*
94016550 TTGGGCCTGATGGGCCATGTGAATGAGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
94016578 TTGGGCCT
1 TTGGGCCT
94016586 AAAGGGGCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.19, C:0.16, G:0.38, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGAGA
Found at i:94016984 original size:69 final size:69
Alignment explanation
Indices: 94016873--94017011 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
94016863 TTAACGGGCC
94016873 AAGGTAAGTAATAAACCCATAATAAAGAGAAATTACTGAAATACCCTCGATTTGTAAAATTACCA
1 AAGGTAAGTAATAAACCCATAATAAAGAGAAATTACTGAAATACCCTCGATTTGTAAAATTACCA
94016938 AAAT
66 AAAT
*
94016942 AAGGTAAGTAATAAACCCATAATAAAGAGAAATTACTGAAATACCCTCGATTTGTAAAATTATCA
1 AAGGTAAGTAATAAACCCATAATAAAGAGAAATTACTGAAATACCCTCGATTTGTAAAATTACCA
94017007 AAAT
66 AAAT
94017011 A
1 A
94017012 CCCTCGATTG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.50, C:0.14, G:0.12, T:0.25
Consensus pattern (69 bp):
AAGGTAAGTAATAAACCCATAATAAAGAGAAATTACTGAAATACCCTCGATTTGTAAAATTACCA
AAAT
Found at i:94017050 original size:53 final size:53
Alignment explanation
Indices: 94016970--94018208 Score: 1376
Period size: 53 Copynumber: 23.4 Consensus size: 53
94016960 ATAATAAAGA
94016970 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGT
* *
94017023 GAAATTACTGAAACACCCCCGATTTGTAAAATTATCAAAATACCCTCGATTGT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGT
* * ** * **
94017076 AAAATTA-TCGAAATACCCTC-AATTGCGAAATTA-CTGAAATACCCTTAATT-T
1 GAAATTACT-GAAATACCCTCGATTTGTAAAATTATC-AAAATACCCTCGATTGT
* * * * *
94017127 GTATAATTACAGAAATACCCCCGATTTGTAAAATTACCAAAATACCCTTGATTTT
1 G-A-AATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGT
94017182 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGT
*
94017235 GAAATTACTGAAATACCCCCGATTTGTAAAATTATCAAAATACCCTCGATTGT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGT
* *
94017288 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTGT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGT
* * *
94017341 TAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTGT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGT
* * * *
94017394 GAAATTACTGAAATACCCCCGATTTGTAAAATTACCAAAATACCCTTGATTTT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGT
* *
94017447 GAAATTACTGAAATACCCTCGATTTGTAAAATTACCAAAATACCATCGATTGT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGT
* * *
94017500 GAAATTACTAAAATACCC-CAAATTTGTAAAATTATCAAAATACCCTTGATTGT
1 GAAATTACTGAAATACCCTC-GATTTGTAAAATTATCAAAATACCCTCGATTGT
* * * * *
94017553 AAAATTACTGAAATACCCTC-AATTGTGAAATTA-CTGAAATACCCTTGATT-T
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATC-AAAATACCCTCGATTGT
* * *
94017604 GTATAATTA-TAGAAATACCCTTGATTTGTAAAATTACCGAAATACCCTCGATTTGT
1 G-A-AATTACT-GAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGA-TTGT
* ** * * *
94017660 AAAATTACCAAAATACCATCGA-TTGTGAAATTA-CTAAAATACCC-CAAATTTGT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATC-AAAATACCCTC-GA-TTGT
* * * * *
94017713 AAAATTA-TCAAAATACCCTTGA-TTGTAAAATTA-CTGAAATACCCTCAATTGT
1 GAAATTACT-GAAATACCCTCGATTTGTAAAATTATC-AAAATACCCTCGATTGT
* *
94017765 GAAATTACTGAAATACCCTTGATTTGTATAATTA-CAGAAATACCCTCGATTGT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCA-AAATACCCTCGATTGT
* *
94017818 GAAATTACTAAAATACCCTCGATTTGTAAAATTATCAAAATACCCTTGATTGT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGT
* * *
94017871 AAAATTACTGAAATACCCTTGATTTGTATAATTA-CAGAAATACCCTCGATTTGT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCA-AAATACCCTCGA-TTGT
* ** * * *
94017925 AAAATTACCAAAATACCCTCAATTT-TGAAATTA-CTGAAATACCCTCGATTTGT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATC-AAAATACCCTCGA-TTGT
* *
94017978 AAAATTA-TCGAAATACCCTCGA-TTGTTAAATTA-CTAAAATACCCTCGATTTGT
1 GAAATTACT-GAAATACCCTCGATTTGTAAAATTATC-AAAATACCCTCGA-TTGT
* * * *
94018031 AAAATTACCGAAATACCTTCGATTTGTAAAATTACCAAAATACCCTCGATTGT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGT
* * * *
94018084 GAAATTACTGAAATACCC-CCAGTTTGTAAAATTATCGAAACACCCTTGATTTGT
1 GAAATTACTGAAATACCCTCGA-TTTGTAAAATTATCAAAATACCCTCGA-TTGT
* * * * *
94018138 AAAATT-CTG-AATACCCTCAATTTGTAAAATTATCGAAATACCCTTGTAGTGT
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCG-ATTGT
*
94018190 AAAATTACTGAAATACCCT
1 GAAATTACTGAAATACCCT
94018209 TGTAGTGTAA
Statistics
Matches: 1034, Mismatches: 111, Indels: 81
0.84 0.09 0.07
Matches are distributed among these distances:
51 4 0.00
52 123 0.12
53 767 0.74
54 131 0.13
55 8 0.01
56 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (53 bp):
GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGT
Found at i:94017443 original size:265 final size:265
Alignment explanation
Indices: 94016970--94018207 Score: 1538
Period size: 265 Copynumber: 4.7 Consensus size: 265
94016960 ATAATAAAGA
94016970 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGTGAAATTACTGAA
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGTGAAATTACTGAA
* * * * *
94017035 ACACCCCCGATTTGTAAAATTATCAAAATACCCTCGATTGTAAAATTA-TCGAAATACCCTC-AA
66 ATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTGTAAAATTACT-AAAATACCCTCGAT
** * ** * *
94017098 TTGCGAAATTACTGAAATACCCTTAATTTGTATAATTACAGAAATACCCCCGATTTGTAAAATTA
130 TTGTAAAATTACCGAAATACCCTCGA-TTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTA
*
94017163 CCAAAATACCCTTGATTT-TGAAATTA-CTGAAATACCCTCGATTTGTAAAATTA-TCAAAATAC
194 CCAAAATACCCTTGATTTGTAAAATTATC-GAAATACCCTCGA-TTGTAAAATTACT-AAAATAC
94017225 CCTCGATTGT
256 CCTCGATTGT
*
94017235 GAAATTACTGAAATACCCCCGATTTGTAAAATTATCAAAATACCCTCGATTGTGAAATTACTGAA
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGTGAAATTACTGAA
* *
94017300 ATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTGTTAAATTACTAAAATACCCTCGATT
66 ATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTGTAAAATTACTAAAATACCCTCGATT
* * *
94017365 TGTAAAATTACCAAAATACCCTCGATTGTGAAATTACTGAAATACCCCCGATTTGTAAAATTACC
131 TGTAAAATTACCGAAATACCCTCGATTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTACC
* * *
94017430 AAAATACCCTTGATTT-TGAAATTA-CTGAAATACCCTCGATTTGTAAAATTACCAAAATACCAT
196 AAAATACCCTTGATTTGTAAAATTATC-GAAATACCCTCGA-TTGTAAAATTACTAAAATACCCT
94017493 CGATTGT
259 CGATTGT
* * * *
94017500 GAAATTACTAAAATACCC-CAAATTTGTAAAATTATCAAAATACCCTTGATTGTAAAATTACTGA
1 GAAATTACTGAAATACCCTC-GATTTGTAAAATTATCAAAATACCCTCGATTGTGAAATTACTGA
* * * * *
94017564 AATACCCTC-AATTGTGAAATTA-CTGAAATACCCTTGATTTGTATAATTA-TAGAAATACCCTT
65 AATACCCTCGATTTGTAAAATTATC-GAAATACCCTCGA-TTGTAAAATTACTA-AAATACCCTC
* ** *
94017626 GATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCATCGA-TTGTGAAA
127 GATTTGTAAAATTACCGAAATACCCTCGA-TTGTAAAATTACCGAAATACCCCCGATTTGTAAAA
* *** * * *
94017690 TTACTAAAATACCCCAAATTTGTAAAATTATCAAAATACCCTTGATTGTAAAATTACTGAAATAC
191 TTACCAAAATACCCTTGATTTGTAAAATTATCGAAATACCCTCGATTGTAAAATTACTAAAATAC
*
94017755 CCTCAATTGT
256 CCTCGATTGT
* * *
94017765 GAAATTACTGAAATACCCTTGATTTGTATAATTA-CAGAAATACCCTCGATTGTGAAATTACTAA
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCA-AAATACCCTCGATTGTGAAATTACTGA
* * * *
94017829 AATACCCTCGATTTGTAAAATTATCAAAATACCCTTGATTGTAAAATTACTGAAATACCCTTGAT
65 AATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTGTAAAATTACTAAAATACCCTCGAT
* * * * * *
94017894 TTGTATAATTACAGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAATTT-TGAAATTA
130 TTGTAAAATTACCGAAATACCCTCGA-TTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTA
** * *
94017958 CTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTGTTAAATTACTAAAATACCCT
194 CCAAAATACCCTTGATTTGTAAAATTATCGAAATACCCTCGATTGTAAAATTACTAAAATACCCT
94018023 CGATTTGT
259 CGA-TTGT
* * * *
94018031 AAAATTACCGAAATACCTTCGATTTGTAAAATTACCAAAATACCCTCGATTGTGAAATTACTGAA
1 GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGTGAAATTACTGAA
* * * * *
94018096 ATACCC-CCAGTTTGTAAAATTATCGAAACACCCTTGATTTGTAAAATT-CT-GAATACCCTCAA
66 ATACCCTCGA-TTTGTAAAATTATCGAAATACCCTCGA-TTGTAAAATTACTAAAATACCCTCGA
* * * *
94018158 TTTGTAAAATTATCGAAATACCCTTGTAGTGTAAAATTACTGAAATACCC
129 TTTGTAAAATTACCGAAATACCCTCG-ATTGTAAAATTACCGAAATACCC
94018208 TTGTAGTGTA
Statistics
Matches: 860, Mismatches: 92, Indels: 42
0.87 0.09 0.04
Matches are distributed among these distances:
263 1 0.00
264 27 0.03
265 637 0.74
266 181 0.21
267 14 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (265 bp):
GAAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCGATTGTGAAATTACTGAA
ATACCCTCGATTTGTAAAATTATCGAAATACCCTCGATTGTAAAATTACTAAAATACCCTCGATT
TGTAAAATTACCGAAATACCCTCGATTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTACC
AAAATACCCTTGATTTGTAAAATTATCGAAATACCCTCGATTGTAAAATTACTAAAATACCCTCG
ATTGT
Found at i:94018232 original size:27 final size:27
Alignment explanation
Indices: 94018160--94018252 Score: 102
Period size: 27 Copynumber: 3.4 Consensus size: 27
94018150 ACCCTCAATT
*
94018160 TGTAAAATTA-TCGAAATACCCTTGTAG
1 TGTAAAATGACTC-AAATACCCTTGTAG
* *
94018187 TGTAAAATTACTGAAATACCCTTGTAG
1 TGTAAAATGACTCAAATACCCTTGTAG
94018214 TGTAAAATGAC-CAACATA-CCTCTGTAG
1 TGTAAAATGACTCAA-ATACCCT-TGTAG
*
94018241 GGTAAAATGACT
1 TGTAAAATGACT
94018253 GTTTTGCCGT
Statistics
Matches: 58, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
26 5 0.09
27 52 0.90
28 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (27 bp):
TGTAAAATGACTCAAATACCCTTGTAG
Found at i:94026737 original size:46 final size:46
Alignment explanation
Indices: 94026642--94026746 Score: 131
Period size: 46 Copynumber: 2.3 Consensus size: 46
94026632 CATCTCATAC
* * *
94026642 CCGATGCATGTCCCAAACTTGTCTTACATTAGCCTAAATCTCGAGG
1 CCGATGCATGTCCCAAACATGTCTTACACTAGCCTAAATCTCAAGG
** *
94026688 CCGATGCATGTCCCAAACATGTCTTACACTAGCTCT-CGTCTCAATG
1 CCGATGCATGTCCCAAACATGTCTTACACTAGC-CTAAATCTCAAGG
94026734 CCGATGCCATGTC
1 CCGATG-CATGTC
94026747 AATGAGGGGT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
46 43 0.84
47 8 0.16
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAAACATGTCTTACACTAGCCTAAATCTCAAGG
Found at i:94029290 original size:29 final size:29
Alignment explanation
Indices: 94029232--94029297 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
94029222 ATCAACCGCA
* *
94029232 CACACTTAGTGCCATGTACTTTAAACTCG
1 CACACTTAATGCCATGCACTTTAAACTCG
**
94029261 CACACTTAATGCCATGCA-TTTCAAGTTCG
1 CACACTTAATGCCATGCACTTT-AAACTCG
94029290 CACACTTA
1 CACACTTA
94029298 CCTTTTCCGC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.30
Consensus pattern (29 bp):
CACACTTAATGCCATGCACTTTAAACTCG
Found at i:94029412 original size:174 final size:174
Alignment explanation
Indices: 94029119--94029442 Score: 612
Period size: 174 Copynumber: 1.9 Consensus size: 174
94029109 AACTCAAGGT
94029119 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCATTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCATTAATGTAAATAATTTATA
*
94029184 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCACACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCACACACACTTAGTGCCATGT
94029249 ACTTTAAACTCGCACACTTAATGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCGCACACTTAATGCCATGCATTTCAAGTTCGCAC
*
94029293 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCATTAATGTAAATAATTTATA
* *
94029358 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCACACACACTTAGTGCCATGT
94029423 ACTTTAAACTCGCACACTTA
131 ACTTTAAACTCGCACACTTA
94029443 GTGCTGTACA
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 146 1.00
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCATTAATGTAAATAATTTATA
GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCACACACACTTAGTGCCATGT
ACTTTAAACTCGCACACTTAATGCCATGCATTTCAAGTTCGCAC
Found at i:94029438 original size:29 final size:30
Alignment explanation
Indices: 94029399--94029477 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
94029389 CTTAATAATC
94029399 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
94029429 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
94029458 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
94029478 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:94044280 original size:27 final size:26
Alignment explanation
Indices: 94044236--94044286 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
94044226 CTCGCTACAA
*
94044236 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
94044263 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
94044287 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:94045937 original size:79 final size:79
Alignment explanation
Indices: 94045814--94045986 Score: 210
Period size: 79 Copynumber: 2.2 Consensus size: 79
94045804 CCTTCAGAAT
* *
94045814 TTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAC
1 TTAACCGGATATAGCTACTCGCTCAAATACCTTCGGGACATAGCCCGGAAT-TAGTAACTCGCAC
94045878 AAATGCCTTCGGGAC
65 AAATGCCTTCGGGAC
* * * *
94045893 TTAACCCGGATTTAG-TAACTCGCTCCAATACCTTTGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 TTAA-CCGGATATAGCT-ACTCGCTCAAATACCTTCGGGACATAGCCCGGAATTAGTAACTCGCA
94045956 CAAATGCCTTC-GGATC
64 CAAATGCCTTCGGGA-C
*
94045972 TTAGTCCGGATATAG
1 TTA-ACCGGATATAG
94045987 TCACTTAGCA
Statistics
Matches: 81, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
78 3 0.04
79 50 0.62
80 28 0.35
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (79 bp):
TTAACCGGATATAGCTACTCGCTCAAATACCTTCGGGACATAGCCCGGAATTAGTAACTCGCACA
AATGCCTTCGGGAC
Found at i:94045947 original size:39 final size:40
Alignment explanation
Indices: 94045830--94046023 Score: 205
Period size: 40 Copynumber: 4.8 Consensus size: 40
94045820 GGATATAGCT
*
94045830 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
94045870 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
94045910 ACTCGCTCCAATACCTTTGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
94045949 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCTCAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* * * *
94045989 ACTTAGCACAAAAGCCTTCGGGACTTAGCTCGGAT
1 AC-TCGCTCAAATGCCTTCGGGACTTAGCCCGGAT
94046024 ATCATTCGAA
Statistics
Matches: 128, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
38 2 0.02
39 30 0.23
40 67 0.52
41 26 0.20
42 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:94054077 original size:40 final size:40
Alignment explanation
Indices: 94054040--94054227 Score: 186
Period size: 40 Copynumber: 4.7 Consensus size: 40
94054030 GGATATAGCT
* *
94054040 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
94054080 ACTCACACAAATGCCTTCGGGACTTAACCCGAATT-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG-GTTATAGTA
* * * *
94054120 ACTCGCTCCAATACCTTCGGG-CTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* * *
94054159 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTA
* *
94054199 ACTTAGCACAAAAGCCTTCGGGACTTAGC
1 AC-TCGCACAAATGCCTTCGGGACTTAGC
94054228 TCGGATATCA
Statistics
Matches: 119, Mismatches: 21, Indels: 15
0.77 0.14 0.10
Matches are distributed among these distances:
38 2 0.02
39 28 0.24
40 64 0.54
41 22 0.18
42 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:94060829 original size:22 final size:22
Alignment explanation
Indices: 94060801--94060852 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
94060791 AGTTCTATTT
*
94060801 TCATATGAAAGTAACAAAACAA
1 TCATATGAAAGTAACAAAAAAA
94060823 TCATATGAAAGTAACAAAAAAA
1 TCATATGAAAGTAACAAAAAAA
94060845 TCATATGA
1 TCATATGA
94060853 GCCGTATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.58, C:0.12, G:0.10, T:0.21
Consensus pattern (22 bp):
TCATATGAAAGTAACAAAAAAA
Found at i:94064184 original size:8 final size:8
Alignment explanation
Indices: 94064168--94064207 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
94064158 ATGGGCCGAA
94064168 AACGGGCC
1 AACGGGCC
*
94064176 AATGGGCC
1 AACGGGCC
94064184 AACGGGCC
1 AACGGGCC
*
94064192 AATGGGCC
1 AACGGGCC
94064200 AACGGGCC
1 AACGGGCC
94064208 CATTTTGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.25, C:0.33, G:0.38, T:0.05
Consensus pattern (8 bp):
AACGGGCC
Found at i:94064189 original size:16 final size:16
Alignment explanation
Indices: 94064168--94064207 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
94064158 ATGGGCCGAA
94064168 AACGGGCCAATGGGCC
1 AACGGGCCAATGGGCC
94064184 AACGGGCCAATGGGCC
1 AACGGGCCAATGGGCC
94064200 AACGGGCC
1 AACGGGCC
94064208 CATTTTGGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.25, C:0.33, G:0.38, T:0.05
Consensus pattern (16 bp):
AACGGGCCAATGGGCC
Found at i:94070211 original size:38 final size:38
Alignment explanation
Indices: 94070164--94070271 Score: 119
Period size: 38 Copynumber: 2.8 Consensus size: 38
94070154 GGCACGAAGG
* * ** * *
94070164 CCCGAATATAATACCAGCACTAGGCCTGTGGGATTTAT
1 CCCGGATATAATACCAGCACGAAACCTGCGGGATTTAA
94070202 CCCGGATATAATACCAGCACGAAACCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAACCTGCGGGATTTAA
* **
94070240 CCTGGATATTTTACCAGCAC-AAAGCCTGCGGG
1 CCCGGATATAATACCAGCACGAAA-CCTGCGGG
94070272 TCTTTAAGCC
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
37 3 0.05
38 57 0.95
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAACCTGCGGGATTTAA
Found at i:94073844 original size:27 final size:27
Alignment explanation
Indices: 94073805--94073982 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
94073795 ATATTGAGTC
* ** * *
94073805 CGCACACTCAGTGCTTTATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
94073832 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
94073859 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
94073887 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
94073914 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
94073941 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
94073968 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
94073983 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:94073944 original size:82 final size:81
Alignment explanation
Indices: 94073826--94073981 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
94073816 TGCTTTATAA
* *
94073826 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
94073891 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
94073908 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
94073972 CACTTAGTGC
65 CACTTAGTGC
94073982 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:94081972 original size:27 final size:27
Alignment explanation
Indices: 94081942--94082119 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
94081932 ATATTGAGTC
* * * *
94081942 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
94081969 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
94081996 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
94082024 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
94082051 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
94082078 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
94082105 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
94082120 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:94082081 original size:82 final size:81
Alignment explanation
Indices: 94081963--94082118 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
94081953 TGCTATATAA
* *
94081963 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
94082028 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
94082045 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
94082109 CACTTAGTGC
65 CACTTAGTGC
94082119 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:94090106 original size:27 final size:27
Alignment explanation
Indices: 94090076--94090378 Score: 127
Period size: 27 Copynumber: 11.2 Consensus size: 27
94090066 TGTATCTCGA
* *
94090076 TAATTTTGCAAA-CAAATGGTATTTTTG
1 TAATTTTGAAAAGC-AAGGGTATTTTTG
*
94090103 TAATTTTTAAAAGTCAAGGGTATTTTTG
1 TAATTTTGAAAAG-CAAGGGTATTTTTG
*** * *
94090131 TAATTTTTTTAATC-AGGGTTATTTTGG
1 TAATTTTGAAAAGCAAGGG-TATTTTTG
* *
94090158 TAATTTT-ACAAATCAAGGGTATTTTCG
1 TAATTTTGA-AAAGCAAGGGTATTTTTG
* * *
94090185 TAATTTT-ACAAGTCGAGGGTATTTTGG
1 TAATTTTGAAAAG-CAAGGGTATTTTTG
* * * **
94090212 TAATTTT-ACAGGTCGAGGGTATTTCAG
1 TAATTTTGAAAAG-CAAGGGTATTTTTG
* * * *
94090239 TAA-TTTCACAAACCAGGGGTATTTTGG
1 TAATTTTGA-AAAGCAAGGGTATTTTTG
* ** * *
94090266 TAGTTTTTCAAA-CTAGGGGTATTTTGG
1 TAATTTTGAAAAGC-AAGGGTATTTTTG
* * *
94090293 TAATTTT-ACAAACCAGGGGTATTTTGG
1 TAATTTTGA-AAAGCAAGGGTATTTTTG
** * * *
94090320 TAATTTTGCTAATCAATGGTATTTTGG
1 TAATTTTGAAAAGCAAGGGTATTTTTG
* * *
94090347 TAATTTTGTAAACCAAGGGTATTTTAG
1 TAATTTTGAAAAGCAAGGGTATTTTTG
94090374 TAATT
1 TAATT
94090379 CTATCCTATA
Statistics
Matches: 224, Mismatches: 39, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
26 10 0.04
27 182 0.81
28 31 0.14
29 1 0.00
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (27 bp):
TAATTTTGAAAAGCAAGGGTATTTTTG
Found at i:94090180 original size:54 final size:54
Alignment explanation
Indices: 94090038--94090378 Score: 283
Period size: 54 Copynumber: 6.3 Consensus size: 54
94090028 CACCCTACAA
* * * * * * * * * * *
94090038 GGGTGTTTTGGTAAATCTACAAACCAAGTGTATCTCGATAATTTTGCAAACAAA
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACCAG
* * * *** *
94090092 TGGTATTTTTGTAATTTTTA-AAAGTCAAGGGTATTTTTGTAATTTTTTTAATCAG
1 GGGTATTTTGGTAA-TTTTACAAA-TCAAGGGTATTTTGGTAATTTTACAAACCAG
* * **
94090147 GGTTATTTTGGTAATTTTACAAATCAAGGGTATTTTCGTAATTTTACAAGTC-G
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACCAG
** * ** *
94090200 AGGGTATTTTGGTAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACCAG
* * *
94090255 GGGTATTTTGGTAGTTTTTCAAA-CTAGGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATC-AAGGGTATTTTGGTAATTTTACAAACCAG
* * * ** *
94090309 GGGTATTTTGGTAATTTTGCTAATCAATGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACCAG
*
94090363 GGGTATTTTAGTAATT
1 GGGTATTTTGGTAATT
94090379 CTATCCTATA
Statistics
Matches: 228, Mismatches: 52, Indels: 14
0.78 0.18 0.05
Matches are distributed among these distances:
53 2 0.01
54 188 0.82
55 38 0.17
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACCAG
Found at i:94090215 original size:81 final size:80
Alignment explanation
Indices: 94090076--94090378 Score: 245
Period size: 81 Copynumber: 3.7 Consensus size: 80
94090066 TGTATCTCGA
* * * * * *
94090076 TAATTTTGCAAA-CAAATGGTATTTTTGTAATTTTTAAAAGTCAAGGGTATTTTTGTAATTTTTT
1 TAATTTTACAAATC-AAGGGTATTTTGGTAA-TTTTACAAGTCAAGGGTATTTTGGTAATTTTTA
*
94090140 TAATCAGGGTTATTTTGG
64 AAATCAGGG-TATTTTGG
* *
94090158 TAATTTTACAAATCAAGGGTATTTTCGTAATTTTACAAGTCGAGGGTATTTTGGTAA-TTTTACA
1 TAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAGTCAAGGGTATTTTGGTAATTTTTA-A
** **
94090222 GGTCGAGGGTATTTCAG
65 AATC-AGGGTATTTTGG
* * * * * * *
94090239 TAATTTCACAAACCAGGGGTATTTTGGTAGTTTTTCAA-ACTAGGGGTATTTTGGTAA-TTTTAC
1 TAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAGTC-AAGGGTATTTTGGTAATTTTTA-
*
94090302 AAACCAGGGGTATTTTGG
64 AAATCA-GGGTATTTTGG
* * * ** ** *
94090320 TAATTTTGCTAATCAATGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATT
1 TAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAGTCAAGGGTATTTTGGTAATT
94090379 CTATCCTATA
Statistics
Matches: 176, Mismatches: 38, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
80 6 0.03
81 138 0.78
82 31 0.18
83 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (80 bp):
TAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAGTCAAGGGTATTTTGGTAATTTTTAAA
ATCAGGGTATTTTGG
Found at i:94090697 original size:45 final size:45
Alignment explanation
Indices: 94090629--94090714 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
94090619 ACCGGCATTT
94090629 CGGCATTTGCCATTCTACAGCTAGAGTAGTGCGAAATACAGTGAC
1 CGGCATTTGCCATTCTACAGCTAGAGTAGTGCGAAATACAGTGAC
* *
94090674 CGGCATTTGCCTTTCTACGGCTAGAGTAGTGCGAAATACAG
1 CGGCATTTGCCATTCTACAGCTAGAGTAGTGCGAAATACAG
94090715 ACCTGTTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (45 bp):
CGGCATTTGCCATTCTACAGCTAGAGTAGTGCGAAATACAGTGAC
Found at i:94095667 original size:13 final size:13
Alignment explanation
Indices: 94095649--94095673 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94095639 TCGACAGGGA
94095649 CACGCCCGTGTGC
1 CACGCCCGTGTGC
94095662 CACGCCCGTGTG
1 CACGCCCGTGTG
94095674 TGATTGCCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.44, G:0.32, T:0.16
Consensus pattern (13 bp):
CACGCCCGTGTGC
Found at i:94098554 original size:47 final size:47
Alignment explanation
Indices: 94098495--94098616 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
94098485 GCATTGGCAC
*
94098495 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
94098542 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
* *
94098589 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
94098617 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:94098777 original size:53 final size:54
Alignment explanation
Indices: 94098595--94098802 Score: 224
Period size: 54 Copynumber: 3.9 Consensus size: 54
94098585 TTGGTAAGAT
* * *
94098595 AAGGATATCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * * *
94098649 AAGGAAATCATGTAAGACTATGTCCAGGCATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATAAGTT-CTATAAGGC
* * *
94098704 AAAGG-TCCCATGTAAGACCATG-CTAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGTC-AAGGCATGGCATTGATAAGTTCTATAAGGC
** * * *
94098757 AAGGATACCACATAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATAAGTTC
94098803 AAAAAGGAAA
Statistics
Matches: 131, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
52 4 0.03
53 40 0.31
54 42 0.32
55 41 0.31
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGATAAGTTCTATAAGGC
Found at i:94098803 original size:53 final size:54
Alignment explanation
Indices: 94098595--94098802 Score: 208
Period size: 55 Copynumber: 3.9 Consensus size: 54
94098585 TTGGTAAGAT
* *
94098595 AAGGATATCATGTAAGACCATGCCAAGGCATGG-AATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAA-TGATAAGTTCTATAAGGC
* * * * * *
94098649 AAGGAAATCATGTAAGACTATGTCCAGGCATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATGATAAGTT-CTATAAGGC
* * * *
94098704 AAAGG-TCCCATGTAAGACCATG-CTAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGTC-AAGGCATGGCAATGATAAGTTCTATAAGGC
** * *
94098757 AAGGATACCACATAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATGATAAGTTC
94098803 AAAAAGGAAA
Statistics
Matches: 130, Mismatches: 18, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
52 4 0.03
53 40 0.31
54 40 0.31
55 42 0.32
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATGATAAGTTCTATAAGGC
Found at i:94103119 original size:27 final size:27
Alignment explanation
Indices: 94103065--94103204 Score: 185
Period size: 27 Copynumber: 5.2 Consensus size: 27
94103055 CGATTTACAA
*
94103065 AATTATTGAAATA-CCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
94103091 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
94103118 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
94103145 AAATA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* * *
94103172 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACTGAAATACCCTTGTAGGGTAG
94103199 AATTAC
1 AATTAC
94103205 CATTTTGCCC
Statistics
Matches: 99, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
26 13 0.13
27 86 0.87
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.28
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:94103972 original size:27 final size:26
Alignment explanation
Indices: 94103942--94104049 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
94103932 ATTCTGTTAA
* * *
94103942 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCT-ATTCTG
94103969 GTGGCTATGCCACAAATATCTATTCTG
1 GTGGCTATGCCAC-AATATCTATTCTG
* *
94103996 GTGGCTCTGCCACAATATCTATAACTG
1 GTGGCTATGCCACAATATCTAT-TCTG
* * * *
94104023 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTATGCCACAATATCTATTCTG
94104049 G
1 G
94104050 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 13 0.19
27 51 0.73
28 6 0.09
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTATTCTG
Found at i:94104024 original size:54 final size:53
Alignment explanation
Indices: 94103942--94104049 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 53
94103932 ATTCTGTTAA
* * * ** *
94103942 GTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTATTCTG
1 GTGGCTCTGCCACAATATCTATAACTGGTGACTATGCCAC-AATATCTATTCTG
* * *
94103996 GTGGCTCTGCCACAATATCTATAACTGGTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTATAACTGGTGACTATGCCACAATATCTATTCTG
94104049 G
1 G
94104050 CAGCCATGCT
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 13 0.29
54 32 0.71
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTATAACTGGTGACTATGCCACAATATCTATTCTG
Found at i:94104176 original size:6 final size:6
Alignment explanation
Indices: 94104167--94104291 Score: 60
Period size: 6 Copynumber: 20.3 Consensus size: 6
94104157 TTGCATTCAC
* * * *
94104167 ATTCTG ATTCTG ATTCTG -TTGCCTG GTACTG ATTCTG ATTCT- ATCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * * *
94104217 ATTCTT ATTCTG ATTCTG ATTCTG ATTTTG -TCACCTG ATTTTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
94104266 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
94104292 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
5 6 0.07
6 72 0.80
7 8 0.09
8 4 0.04
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:94104236 original size:37 final size:37
Alignment explanation
Indices: 94104195--94104283 Score: 108
Period size: 37 Copynumber: 2.4 Consensus size: 37
94104185 TTGCCTGGTA
*
94104195 CTGATTCTGATTCTATCACCTAATTCTT-ATTCTGATT
1 CTGATTCTGATTCTATCACCTAATT-TTGATTCTAATT
* * *
94104232 CTGATTCTGATTTTGTCACCTGATTTTGATTCTAATT
1 CTGATTCTGATTCTATCACCTAATTTTGATTCTAATT
* *
94104269 CTCATTTTGATTCTA
1 CTGATTCTGATTCTA
94104284 GTTCTGATAA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
36 2 0.05
37 41 0.95
ACGTcount: A:0.20, C:0.19, G:0.10, T:0.51
Consensus pattern (37 bp):
CTGATTCTGATTCTATCACCTAATTTTGATTCTAATT
Found at i:94106345 original size:58 final size:58
Alignment explanation
Indices: 94106255--94106366 Score: 197
Period size: 58 Copynumber: 1.9 Consensus size: 58
94106245 AAATTTCTGA
* *
94106255 CATTTCATGGGCTTGTGAGTATGCGAATGCTCTCAAGATGTAGAGTAAATGTTATCGG
1 CATTTCAAGGGCTTGTGAGTATGCGAATGCTCTCAAGACGTAGAGTAAATGTTATCGG
*
94106313 CATTTCAAGGGCTTGTGAGTATGGGAATGCTCTCAAGACGTAGAGTAAATGTTA
1 CATTTCAAGGGCTTGTGAGTATGCGAATGCTCTCAAGACGTAGAGTAAATGTTA
94106367 GATCTAGCAC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (58 bp):
CATTTCAAGGGCTTGTGAGTATGCGAATGCTCTCAAGACGTAGAGTAAATGTTATCGG
Found at i:94111803 original size:29 final size:29
Alignment explanation
Indices: 94111758--94111821 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
94111748 CCGCTATGGA
*
94111758 AGTGGGAAAGAGCAACAATGGACTTTGTG
1 AGTGGGAAAGAGCAACAATGGACTTTATG
*
94111787 AGTGGGAAAGAGTAACAATGGACTTTATG
1 AGTGGGAAAGAGCAACAATGGACTTTATG
*
94111816 AATGGG
1 AGTGGG
94111822 TTACCTTTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.36, C:0.08, G:0.34, T:0.22
Consensus pattern (29 bp):
AGTGGGAAAGAGCAACAATGGACTTTATG
Found at i:94116586 original size:42 final size:42
Alignment explanation
Indices: 94116525--94116678 Score: 168
Period size: 42 Copynumber: 3.6 Consensus size: 42
94116515 TGAAATTATA
** *
94116525 TGTAAGACCATATAAGGGATATGGCATCAATATGAGACTATG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTATG
*
94116567 TGTAAGACCATATCCGGGATATGGCATCGATATGAGACT-TCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTAT-G
* * * * **
94116609 TGTAAGACCATAGT-TGGGCTATTAGCATCGATACGAGATTACA
1 TGTAAGACCATA-TCTGGGATA-TGGCATCGATATGAGACTATG
*
94116652 TGTAAGACCATATCTGGGACATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
94116679 TGGTACAGTA
Statistics
Matches: 94, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 60 0.64
43 33 0.35
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTATG
Found at i:94119948 original size:40 final size:40
Alignment explanation
Indices: 94119865--94120089 Score: 195
Period size: 40 Copynumber: 5.7 Consensus size: 40
94119855 TTGAATGCTG
* * ** * *
94119865 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGATACTAAA
** *
94119905 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* * * *
94119945 TCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * **
94119985 GCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * * *
94120025 TCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
94120064 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
94120090 AACGAGGAGC
Statistics
Matches: 154, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
39 33 0.21
40 113 0.73
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:94120011 original size:80 final size:79
Alignment explanation
Indices: 94119918--94120089 Score: 227
Period size: 80 Copynumber: 2.2 Consensus size: 79
94119908 GGACTAAGAT
* * *
94119918 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCA-TCGTGCGAGTTACTA
* *
94119983 AAGCCGGGTTAAGTC
65 AAACCGGGCTAAGTC
* ** * * *
94119998 CCGAAGGCATTTGTGCGAGTTGTTAAATCCGGGTTACGTCCCGAAGGCATGGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATCGTGCGAGTTACTAA
*
94120063 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
94120077 CCGAAGGCATTTG
1 CCGAAGGCATTTG
94120090 AACGAGGAGC
Statistics
Matches: 80, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
79 37 0.46
80 43 0.54
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATCGTGCGAGTTACTAA
AACCGGGCTAAGTC
Found at i:94120069 original size:39 final size:40
Alignment explanation
Indices: 94119918--94120087 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
94119908 GGACTAAGAT
* * *
94119918 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
94119958 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* ** *
94119998 CCGAAGGCATTTGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
94120038 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
94120077 CCGAAGGCATT
1 CCGAAGGCATT
94120088 TGAACGAGGA
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
39 32 0.29
40 79 0.71
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:94120107 original size:79 final size:80
Alignment explanation
Indices: 94119940--94120122 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
94119930 GTGCGAGATA
* * * *
94119940 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
94120005 CATTTGTGCGAGTTG
66 CATTTGAACGAGGAG
* * * * *
94120020 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
94120084 CATTTGAACGAGGAG
66 CATTTGAACGAGGAG
* *
94120099 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
94120123 TACGCGAATT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 48 0.56
80 24 0.28
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTTGAACGAGGAG
Found at i:94128452 original size:40 final size:40
Alignment explanation
Indices: 94128422--94128591 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
94128412 GGACTAAGAT
* *
94128422 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* *
94128462 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** * *
94128502 CCGAAGGCATTCGTGCGAGTTGTTGAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
94128542 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
94128581 CCGAAGGCATT
1 CCGAAGGCATT
94128592 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 33 0.28
40 84 0.72
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:94128506 original size:80 final size:79
Alignment explanation
Indices: 94128369--94128593 Score: 245
Period size: 80 Copynumber: 2.8 Consensus size: 79
94128359 TTGAATGCTG
* * * * * * *
94128369 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
94128433 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* * *
94128449 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTT
* ** *
94128514 GTGCGAGTTGTTGAA
65 GTGCGAGATACTAAA
* * * * *
94128529 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
94128594 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 36 0.30
80 82 0.67
81 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:94128611 original size:79 final size:80
Alignment explanation
Indices: 94128447--94128626 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 80
94128437 CGAGATACTA
* * *
94128447 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAT
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** ** *
94128512 TCGTGCGAGTTGTTG
66 TCGAACGAGGAGCTG
* * *
94128527 AATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCAT
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
*
94128591 TTGAACGAGGAGCT-
66 TCGAACGAGGAGCTG
*
94128605 ATATCC-GGTTAAATCCCGAAGG
1 A-ATCCGGGTTAAGTCCCGAAGG
94128627 TACGCGAATT
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
78 15 0.18
79 45 0.53
80 25 0.29
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
TCGAACGAGGAGCTG
Found at i:94136339 original size:40 final size:40
Alignment explanation
Indices: 94136309--94136478 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
94136299 GGACTAAGAT
* *
94136309 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* *
94136349 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** * *
94136389 CCGAAGGCATTCGTGCGAGTTGTTGAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
94136429 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
94136468 CCGAAGGCATT
1 CCGAAGGCATT
94136479 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 33 0.28
40 84 0.72
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:94136393 original size:80 final size:79
Alignment explanation
Indices: 94136256--94136480 Score: 245
Period size: 80 Copynumber: 2.8 Consensus size: 79
94136246 TTGAATGCTG
* * * * * * *
94136256 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
94136320 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* * *
94136336 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTT
* ** *
94136401 GTGCGAGTTGTTGAA
65 GTGCGAGATACTAAA
* * * * *
94136416 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
94136481 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 36 0.30
80 82 0.67
81 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:94136498 original size:79 final size:80
Alignment explanation
Indices: 94136334--94136513 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 80
94136324 CGAGATACTA
* * *
94136334 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAT
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** ** *
94136399 TCGTGCGAGTTGTTG
66 TCGAACGAGGAGCTG
* * *
94136414 AATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCAT
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
*
94136478 TTGAACGAGGAGCT-
66 TCGAACGAGGAGCTG
*
94136492 ATATCC-GGTTAAATCCCGAAGG
1 A-ATCCGGGTTAAGTCCCGAAGG
94136514 TACGCGAATT
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
78 15 0.18
79 45 0.53
80 25 0.29
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
TCGAACGAGGAGCTG
Found at i:94137049 original size:113 final size:113
Alignment explanation
Indices: 94136851--94137075 Score: 441
Period size: 113 Copynumber: 2.0 Consensus size: 113
94136841 GCTCCTCTGT
94136851 TTTATAGATTTTTGGTTCTCCAGCTATCGGACTCGGGATCTTGAAGTCGAAGTCGCCCACACTAT
1 TTTATAGATTTTTGGTTCTCCAGCTATCGGACTCGGGATCTTGAAGTCGAAGTCGCCCACACTAT
94136916 CAAAGGCTCTTTTGGGTACTATTTTGGTTGAATTTTGTTATGGCATGA
66 CAAAGGCTCTTTTGGGTACTATTTTGGTTGAATTTTGTTATGGCATGA
*
94136964 TTTATAGATTTTTGGTTCTCCAGCTATCGGACTCGGGATCTTGAAGTCGAAGTCGCCCAGACTAT
1 TTTATAGATTTTTGGTTCTCCAGCTATCGGACTCGGGATCTTGAAGTCGAAGTCGCCCACACTAT
94137029 CAAAGGCTCTTTTGGGTACTATTTTGGTTGAATTTTGTTATGGCATG
66 CAAAGGCTCTTTTGGGTACTATTTTGGTTGAATTTTGTTATGGCATG
94137076 TATAGGACTA
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 111 1.00
ACGTcount: A:0.21, C:0.17, G:0.24, T:0.38
Consensus pattern (113 bp):
TTTATAGATTTTTGGTTCTCCAGCTATCGGACTCGGGATCTTGAAGTCGAAGTCGCCCACACTAT
CAAAGGCTCTTTTGGGTACTATTTTGGTTGAATTTTGTTATGGCATGA
Found at i:94142978 original size:87 final size:87
Alignment explanation
Indices: 94142832--94143006 Score: 341
Period size: 87 Copynumber: 2.0 Consensus size: 87
94142822 GACAGCCCAA
*
94142832 AGTTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACTAAAATGTTTGAATGTG
1 AGTTGACCCTAGTCGGGAAGTGGTTTCGGGACCACTAAACCGAGTCACTAAAATGTTTGAATGTG
94142897 ATACTTATTGTCTAGAATATGT
66 ATACTTATTGTCTAGAATATGT
94142919 AGTTGACCCTAGTCGGGAAGTGGTTTCGGGACCACTAAACCGAGTCACTAAAATGTTTGAATGTG
1 AGTTGACCCTAGTCGGGAAGTGGTTTCGGGACCACTAAACCGAGTCACTAAAATGTTTGAATGTG
94142984 ATACTTATTGTCTAGAATATGT
66 ATACTTATTGTCTAGAATATGT
94143006 A
1 A
94143007 ATAATGAATG
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (87 bp):
AGTTGACCCTAGTCGGGAAGTGGTTTCGGGACCACTAAACCGAGTCACTAAAATGTTTGAATGTG
ATACTTATTGTCTAGAATATGT
Found at i:94143426 original size:100 final size:102
Alignment explanation
Indices: 94143317--94143520 Score: 385
Period size: 102 Copynumber: 2.0 Consensus size: 102
94143307 GTTTGTCCCC
94143317 CCATTGCCGTGAGCTAAAGAAGAGAAA-GGGGGAATTTTGTTCATCCTTTTCTCATCTTCATGCT
1 CCATTGCCGTGAGCTAAAGAAGAGAAAGGGGGGAATTTTGTTCATCCTTTTCTCATCTTCATGCT
94143381 TGCC-AAAAACTAGAAAGAAAAACAAAGAAAAATTTT
66 TGCCAAAAAACTAGAAAGAAAAACAAAGAAAAATTTT
94143417 CCATTGCCGTGAGCTAAAGAAGAGAAAGGGGGGGAATTTTGTTCATCCTTTTCTCATCTTCATGC
1 CCATTGCCGTGAGCTAAAGAAGAGAAA-GGGGGGAATTTTGTTCATCCTTTTCTCATCTTCATGC
94143482 TTGCCAAAAAACTAGAAAGAAAAACAAAGAAAAATTTT
65 TTGCCAAAAAACTAGAAAGAAAAACAAAGAAAAATTTT
94143520 C
1 C
94143521 TCATCCTTTG
Statistics
Matches: 101, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
100 27 0.27
102 41 0.41
103 33 0.33
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (102 bp):
CCATTGCCGTGAGCTAAAGAAGAGAAAGGGGGGAATTTTGTTCATCCTTTTCTCATCTTCATGCT
TGCCAAAAAACTAGAAAGAAAAACAAAGAAAAATTTT
Found at i:94143932 original size:107 final size:107
Alignment explanation
Indices: 94143790--94144004 Score: 421
Period size: 107 Copynumber: 2.0 Consensus size: 107
94143780 AGATTCGGCC
*
94143790 TAGGTGGAGGTTGTGTTAATGCCATTGCATGCAAAATATGAAGCTTGTTAATGATGCATGTGATG
1 TAGGTGGAGGTTGTGTTAATGCCATTGCATGCAAAATATGAAGCTTGATAATGATGCATGTGATG
94143855 ATGGCTTGATGATTCTTGAACCTCCTTTTTAGCATTTTTTTT
66 ATGGCTTGATGATTCTTGAACCTCCTTTTTAGCATTTTTTTT
94143897 TAGGTGGAGGTTGTGTTAATGCCATTGCATGCAAAATATGAAGCTTGATAATGATGCATGTGATG
1 TAGGTGGAGGTTGTGTTAATGCCATTGCATGCAAAATATGAAGCTTGATAATGATGCATGTGATG
94143962 ATGGCTTGATGATTCTTGAACCTCCTTTTTAGCATTTTTTTT
66 ATGGCTTGATGATTCTTGAACCTCCTTTTTAGCATTTTTTTT
94144004 T
1 T
94144005 TGTGTGAGCA
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
107 107 1.00
ACGTcount: A:0.24, C:0.12, G:0.23, T:0.41
Consensus pattern (107 bp):
TAGGTGGAGGTTGTGTTAATGCCATTGCATGCAAAATATGAAGCTTGATAATGATGCATGTGATG
ATGGCTTGATGATTCTTGAACCTCCTTTTTAGCATTTTTTTT
Found at i:94144818 original size:39 final size:40
Alignment explanation
Indices: 94144667--94144836 Score: 189
Period size: 40 Copynumber: 4.3 Consensus size: 40
94144657 GGACTAAGAT
* * *
94144667 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
94144707 CCGAGGGCATTCGTGCGAGTTATTAGAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
94144747 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * * *
94144787 CCCAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
94144826 CCGAAGGCATT
1 CCGAAGGCATT
94144837 TGAACGAGGA
Statistics
Matches: 108, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 31 0.29
40 77 0.71
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:94151722 original size:40 final size:40
Alignment explanation
Indices: 94151678--94151869 Score: 285
Period size: 40 Copynumber: 4.8 Consensus size: 40
94151668 GAGAATTGAG
*
94151678 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
94151718 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
94151758 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
94151798 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
94151838 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
94151870 ATCATGCTGG
Statistics
Matches: 137, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 137 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:94155182 original size:47 final size:47
Alignment explanation
Indices: 94155129--94155602 Score: 876
Period size: 47 Copynumber: 10.1 Consensus size: 47
94155119 TTAAATGAGT
94155129 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
94155176 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
94155223 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
94155270 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
94155317 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
94155364 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
94155411 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
94155458 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
94155505 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * *
94155552 TAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
94155599 TAAG
1 TAAG
94155603 TCCCGAAGAG
Statistics
Matches: 419, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 419 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:94170977 original size:48 final size:48
Alignment explanation
Indices: 94170504--94170964 Score: 604
Period size: 48 Copynumber: 9.6 Consensus size: 48
94170494 ACTCGAGAGT
* * * * * *
94170504 CTCGCACCCAAAGTGCCAATATCATGGCCAGAGGCCAACTC-AATTAT
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
* * *
94170551 CTCGCATCCGAAGTGCCAATGTCATGGCCCGAAGCCAAATCAATGTAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
* * *
94170599 CTCACACTCGAAGTGCCAATATCATGGCCCGAAACCAAATCAAAGTAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
* *
94170647 CTCGCACTCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATA-TAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAA-AGTAA
* * * *
94170695 CTCGTACCCGAATTGCCAATATCATGGCCTGAAGCCAAATCAAAGAAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
*
94170743 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCCAATCAAAGTAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
* * * *
94170791 CTC-CTACTCAAAGTGCCAATATCATGACCCGGAGCCAAATCAAAGTAA
1 CTCGC-ACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
* * * *
94170839 CTCACACTCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATGTAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
* * *
94170887 CTCGCACCTGAAGTGCCAATATCATGGCCTGGAGCCAAATCAAAGTAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
*
94170935 CTTGCACCCGAAGTGCCAATATCATGGCCC
1 CTCGCACCCGAAGTGCCAATATCATGGCCC
94170965 AAAGAAAAAT
Statistics
Matches: 360, Mismatches: 49, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
47 37 0.10
48 321 0.89
49 2 0.01
ACGTcount: A:0.35, C:0.30, G:0.17, T:0.18
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAAGTAA
Found at i:94173251 original size:34 final size:34
Alignment explanation
Indices: 94173166--94173263 Score: 133
Period size: 34 Copynumber: 2.9 Consensus size: 34
94173156 GAGCGATAAT
* * *
94173166 TCTGGGCCTAAGCCCATATCAGTAACAGCAGCAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
*
94173200 TCTAGGCCTTAGCCCATTTCAGTAACAGTAGCAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
* * *
94173234 TCTGGGCTTTAGCCCATTTCAATAATAGTA
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTA
94173264 ATCAGCGCAG
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (34 bp):
TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
Found at i:94173700 original size:27 final size:27
Alignment explanation
Indices: 94173654--94173768 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 27
94173644 GAACAAATCT
* * * *
94173654 GTCATTTTACCTTACCGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTTCG
*
94173681 GTCATTTTACCCTACAGGGGTATTTTG
1 GTCATTTTACCCTACAGGGGTATTTCG
* * ***
94173708 GTCATTCTACCTTGTGGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGTATTTCG
* *
94173735 GTCATTTTACCCTATAAGGGTATTTCG
1 GTCATTTTACCCTACAGGGGTATTTCG
94173762 GTCATTT
1 GTCATTT
94173769 GATCACATAA
Statistics
Matches: 72, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTTCG
Found at i:94173719 original size:54 final size:54
Alignment explanation
Indices: 94173654--94173767 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
94173644 GAACAAATCT
* * *
94173654 GTCATTTTACCTTACCGGGGTATTACAGTCATTTTACCCTACAGGGGTATTTTG
1 GTCATTCTACCTTACCGGGGTATTACAGTCATTTTACCCTACAAGGGTATTTCG
*** * * *
94173708 GTCATTCTACCTTGTGGGGGTATTTCGGTCATTTTACCCTATAAGGGTATTTCG
1 GTCATTCTACCTTACCGGGGTATTACAGTCATTTTACCCTACAAGGGTATTTCG
94173762 GTCATT
1 GTCATT
94173768 TGATCACATA
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.40
Consensus pattern (54 bp):
GTCATTCTACCTTACCGGGGTATTACAGTCATTTTACCCTACAAGGGTATTTCG
Found at i:94173778 original size:27 final size:27
Alignment explanation
Indices: 94173725--94173781 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
94173715 TACCTTGTGG
* *
94173725 GGGTATTTCGGTCATTTTACCCTATAA
1 GGGTATTTCGGTCATTTGACACTATAA
94173752 GGGTATTTCGGTCATTTGATCAC-ATAA
1 GGGTATTTCGGTCATTTGA-CACTATAA
94173779 GGG
1 GGG
94173782 CAAAATCTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTGACACTATAA
Found at i:94173944 original size:27 final size:27
Alignment explanation
Indices: 94173762--94173944 Score: 240
Period size: 27 Copynumber: 6.8 Consensus size: 27
94173752 GGGTATTTCG
* *
94173762 GTCATTTGATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
* ***
94173789 TTCATTTTATCACATAAGCACAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
* *
94173816 ATCATTTTATCACGTAAGGGTAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
*
94173843 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
**
94173870 GTCATTTTATCACGCAAGGGTAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
*
94173897 GTCATTTTATTACATAAGGGTAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
* *
94173924 ATCATTTTATCACATGAGGGT
1 GTCATTTTATCACATAAGGGT
94173945 TCAGGTACGC
Statistics
Matches: 135, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 135 1.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGTAAAATC
Found at i:94176029 original size:6 final size:6
Alignment explanation
Indices: 94175999--94176086 Score: 56
Period size: 6 Copynumber: 14.3 Consensus size: 6
94175989 AAGAAACATT
* * * * *
94175999 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAGA ATCAG- GTGACAGG
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
*
94176048 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
94176087 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:94176057 original size:25 final size:25
Alignment explanation
Indices: 94176020--94176086 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
94176010 AATCAAAATG
* *
94176020 AGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
94176045 AGGATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
94176070 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
94176087 GTGAATGCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.45, C:0.13, G:0.22, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:94176245 original size:27 final size:26
Alignment explanation
Indices: 94176200--94176273 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 26
94176190 TTGTAGCATG
* *
94176200 GCTACCAGAATAGATATTGTGATAGA
1 GCTACCAGAACAGATATTGTGACAGA
* *
94176226 GTTACCAGATACAGATATTGTGGCAGA
1 GCTACCAGA-ACAGATATTGTGACAGA
* *
94176253 GCCACCAGAACAGATAATGTG
1 GCTACCAGAACAGATATTGTG
94176274 GCAAAGCCAC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 19 0.47
27 21 0.52
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (26 bp):
GCTACCAGAACAGATATTGTGACAGA
Found at i:94176273 original size:26 final size:26
Alignment explanation
Indices: 94176229--94176291 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
94176219 TGATAGAGTT
* *
94176229 ACCAGATACAGATATTGTGGCAGAGCC
1 ACCAGA-ACAGATAATGTGGCAAAGCC
94176256 ACCAGAACAGATAATGTGGCAAAGCC
1 ACCAGAACAGATAATGTGGCAAAGCC
*
94176282 ACTA-AACAGA
1 ACCAGAACAGA
94176292 ATACGTGGCA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 6 0.18
26 21 0.64
27 6 0.18
ACGTcount: A:0.41, C:0.22, G:0.22, T:0.14
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAAAGCC
Found at i:94176299 original size:25 final size:26
Alignment explanation
Indices: 94176229--94176301 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
94176219 TGATAGAGTT
** *
94176229 ACCAGATACAGATATTGTGGCAGAGCC
1 ACCAGA-ACAGATAACGTGGCAAAGCC
*
94176256 ACCAGAACAGATAATGTGGCAAAGCC
1 ACCAGAACAGATAACGTGGCAAAGCC
*
94176282 ACTA-AACAGA-ATACGTGGCA
1 ACCAGAACAGATA-ACGTGGCA
94176302 CAAAGCCATC
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.02
25 13 0.32
26 21 0.51
27 6 0.15
ACGTcount: A:0.40, C:0.22, G:0.23, T:0.15
Consensus pattern (26 bp):
ACCAGAACAGATAACGTGGCAAAGCC
Found at i:94176470 original size:22 final size:22
Alignment explanation
Indices: 94176442--94176506 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
94176432 GCAAATACGT
*
94176442 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
94176464 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
94176486 TTGGCGCAAATCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
94176507 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:94176964 original size:27 final size:27
Alignment explanation
Indices: 94176934--94177400 Score: 457
Period size: 27 Copynumber: 17.3 Consensus size: 27
94176924 GGGGCAAAAT
* *
94176934 GGTAATTTTACACC-ACAAGGGTATCTC
1 GGTAATTTTAC-CCTACAGGGGTATTTC
* *
94176961 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
94176988 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* * *
94177015 GGTAATTCTATCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTC
** * * *
94177042 AATAATTCTACCCTACAGAGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTC
**
94177069 GGT-ATTTCTACCC-ACAAAGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* *
94177095 GGTATTTTTATCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
94177122 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
94177149 GGT-ATTTCTATCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* *
94177176 GGT-ATTTCTACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAGGGGTATTTC
* *
94177203 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
94177230 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
94177257 GAT-ATTTCTACCTTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* *
94177284 GATAATTATACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* * *
94177311 GGTAATTCTACTCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
94177338 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* *
94177365 GAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
**
94177392 AATAATTTT
1 GGTAATTTT
94177401 GTAAATCGAG
Statistics
Matches: 374, Mismatches: 54, Indels: 24
0.83 0.12 0.05
Matches are distributed among these distances:
26 35 0.09
27 326 0.87
28 13 0.03
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAGGGGTATTTC
Found at i:94177073 original size:81 final size:81
Alignment explanation
Indices: 94176952--94177391 Score: 596
Period size: 81 Copynumber: 5.4 Consensus size: 81
94176942 TACACCACAA
* * *
94176952 GGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
1 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
* *
94177017 TAATTCTATCCTACAG
66 TATTTCTACCCTACAG
** * * *
94177033 GGGTATTTTAATAATTCTACCCTACAGAGGTATTTTGGTATTTCTACCC-ACAAAGGTATTTCGG
1 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
* *
94177097 TATTTTTATCCTACAG
66 TATTTCTACCCTACAG
*
94177113 GGGTATTTC-AGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTATCCTACAAGGGTATTTCG
1 GGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCG
*
94177177 GTATTTCTACCCTACAA
65 GTATTTCTACCCTACAG
* * * * * *
94177194 GGGTATTTTGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
1 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
*
94177259 TATTTCTACCTTACAG
66 TATTTCTACCCTACAG
* * * * *
94177275 GGGTATTTCGATAATTATACCCTACAGGGGTATTTCGGTAATTCTACTCTATAGGGGTATTTCGG
1 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
*
94177340 TATTTCTACCCTACAA
66 TATTTCTACCCTACAG
* *
94177356 GGGTATTTCGATATTTCTACCCTACAAGGGTATTTC
1 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
94177392 AATAATTTTG
Statistics
Matches: 317, Mismatches: 39, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
79 1 0.00
80 71 0.22
81 245 0.77
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (81 bp):
GGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
TATTTCTACCCTACAG
Found at i:94177389 original size:54 final size:54
Alignment explanation
Indices: 94176948--94177391 Score: 559
Period size: 54 Copynumber: 8.2 Consensus size: 54
94176938 ATTTTACACC
* *
94176948 ACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
* *** *
94177002 ACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTTAATAATTCTACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
* * ** * *
94177056 AC-AGAGGTATTTTGGTATTTCTACCC-ACAAAGGTATTTCGGTATTTTTATCCT
1 ACAAG-GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
* * *
94177109 ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTATCCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
* * * *
94177163 ACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
* * * *
94177217 ATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCTT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
* * * * *
94177271 ACAGGGGTATTTCGATAATTATACCCTACAGGGGTATTTCGGTAATTCTACTCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
* * * * *
94177325 ATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATATTTCTACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
94177379 ACAAGGGTATTTC
1 ACAAGGGTATTTC
94177392 AATAATTTTG
Statistics
Matches: 330, Mismatches: 57, Indels: 6
0.84 0.15 0.02
Matches are distributed among these distances:
53 41 0.12
54 289 0.88
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
Found at i:94182391 original size:6 final size:6
Alignment explanation
Indices: 94182361--94182423 Score: 58
Period size: 6 Copynumber: 10.3 Consensus size: 6
94182351 TTAAAACATT
* * *
94182361 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
94182410 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
94182424 GTGAATGCAA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
5 2 0.04
6 39 0.85
7 4 0.09
8 1 0.02
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:94182610 original size:26 final size:26
Alignment explanation
Indices: 94182543--94182613 Score: 106
Period size: 27 Copynumber: 2.7 Consensus size: 26
94182533 CATGGCTGCG
* *
94182543 AGAACAGATATTGTGACAGAGTCACC
1 AGAACAGATATTGTGGCAGAGCCACC
94182569 AGATACAGATATTGTGGCAGAGCCACC
1 AGA-ACAGATATTGTGGCAGAGCCACC
*
94182596 AGAACAGATAATGTGGCA
1 AGAACAGATATTGTGGCA
94182614 AAGCTACTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 17 0.41
27 24 0.59
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.18
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAGAGCCACC
Found at i:94183246 original size:27 final size:27
Alignment explanation
Indices: 94183216--94183674 Score: 471
Period size: 27 Copynumber: 17.0 Consensus size: 27
94183206 GGGGCAAAAT
* * *
94183216 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
94183243 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
94183270 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
94183297 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
94183324 AGTAATTCTACCCTACAGGGGTACTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
94183351 GGT-ATTTCTACCTTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
** *
94183378 GACATTTTTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
94183405 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
94183432 GGTAATTCTACCCTACAGGGGTATTTTC
1 GGTAATTTTACCCTACAAGGGTA-TTTC
*
94183460 -GTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
94183486 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
94183513 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * * *
94183540 GATAATTCTACCTTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
94183567 AGTAATTTTATCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
94183594 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* ** *
94183621 GGTAATTCTACCCTACTGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
94183648 AGTAATTGTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
94183675 AATAGTTTTG
Statistics
Matches: 369, Mismatches: 53, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
26 18 0.05
27 335 0.91
28 16 0.04
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:94183353 original size:81 final size:81
Alignment explanation
Indices: 94183234--94183674 Score: 632
Period size: 81 Copynumber: 5.4 Consensus size: 81
94183224 TACCCCATAA
* * *
94183234 GGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGA
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGA
94183299 TAATTCTACCCTACAG
66 TAATTCTACCCTACAG
* *
94183315 GGGTATTTCAGTAATTCTACCCTACAGGGGTACTTCGGTATTTCTACCTTACAAGGGTATTTCGA
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGA
* * * *
94183380 CATTTTTACCCTACAA
66 TAATTCTACCCTACAG
* * * *
94183396 GGGTATTTCGGTAATTCTATCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTCG
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTA-TTTCG
*
94183461 -TAATTTTACCCTACAG
65 ATAATTCTACCCTACAG
* * *
94183477 GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGA
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGA
*
94183542 TAATTCTACCTTACAG
66 TAATTCTACCCTACAG
* * * * *
94183558 GGGTATTTTAGTAATTTTATCCTACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGG
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGA
*
94183623 TAATTCTACCCTACTG
66 TAATTCTACCCTACAG
* *
94183639 GGGTATTTTAGTAATTGTACCCTACAGGGGTATTTC
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
94183675 AATAGTTTTG
Statistics
Matches: 320, Mismatches: 38, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
80 5 0.02
81 310 0.97
82 5 0.02
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (81 bp):
GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGA
TAATTCTACCCTACAG
Found at i:94183636 original size:54 final size:54
Alignment explanation
Indices: 94183232--94183674 Score: 564
Period size: 54 Copynumber: 8.2 Consensus size: 54
94183222 TTTACCCCAT
* *
94183232 AAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAC
* * *
94183286 AAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAC
* * * * * ** *
94183340 AGGGGTACTTCGGTATTTCTACCTTACAAGGGTATTTCGACATTTTTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAC
* *
94183394 AAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTCGGTAATTCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAC
* *
94183448 AGGGGTATTTTC-GTAATTTTACCCTACAGGGGTATTTCGGTATTTCTACCCTAC
1 AAGGGTA-TTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAC
* * * * *
94183502 AAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCTTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAC
* ** * * *
94183556 AGGGGTATTTTAGTAATTTTATCCTACAGGGGTATTTTGGTATTTCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAC
* ** * *
94183610 AAGGGTATTTCGGTAATTCTACCCTACTGGGGTATTTTAGTAATTGTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAC
*
94183664 AGGGGTATTTC
1 AAGGGTATTTC
94183675 AATAGTTTTG
Statistics
Matches: 329, Mismatches: 58, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
53 4 0.01
54 321 0.98
55 4 0.01
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (54 bp):
AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTAC
Found at i:94183760 original size:27 final size:27
Alignment explanation
Indices: 94183730--94184003 Score: 269
Period size: 27 Copynumber: 10.3 Consensus size: 27
94183720 GAGCACTTTG
* *
94183730 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
* *
94183757 GTAATTTTGCAAATTGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
* *
94183784 GTAATTTTGCAAA-CTGAGGGTATTT-T
1 GTAATTTTACAAATC-GAGGGTATTTCA
*
94183810 GATAATTTTACAAATCGAGGGTATTTTA
1 G-TAATTTTACAAATCGAGGGTATTTCA
* *
94183838 GTAATTTTAC-AATCAATGGTATTTC-
1 GTAATTTTACAAATCGAGGGTATTTCA
94183863 GATAATTTTACAAATCGAGGGTATTTCA
1 G-TAATTTTACAAATCGAGGGTATTTCA
* *
94183891 GTTATTTTAC-AATCGACGGTATTTC-
1 GTAATTTTACAAATCGAGGGTATTTCA
* **
94183916 GATAATTTTACAAATCGAGGATATTTGG
1 G-TAATTTTACAAATCGAGGGTATTTCA
* *
94183944 GTAATTTTATAAATCG-GGGCTACTTT-G
1 GTAATTTTACAAATCGAGGG-TA-TTTCA
* *
94183971 GTAATTTTACAACTAG-GGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
94183997 GTAATTT
1 GTAATTT
94184004 GGTAAACTAA
Statistics
Matches: 209, Mismatches: 25, Indels: 27
0.80 0.10 0.10
Matches are distributed among these distances:
25 5 0.02
26 55 0.26
27 142 0.68
28 7 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTATTTCA
Found at i:94183878 original size:53 final size:53
Alignment explanation
Indices: 94183730--94184003 Score: 297
Period size: 53 Copynumber: 5.1 Consensus size: 53
94183720 GAGCACTTTG
* *
94183730 GTAATTTTACAAGTCGAAGGTATTTC-AGTAATTTTGCAAATTGAGGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCA
* * * * *
94183784 GTAATTTTGCAAACTGAGGGTATTTTGATAATTTTACAAATCGAGGGTATTTTA
1 GTAATTTTACAATC-GAAGGTATTTCGATAATTTTACAAATCGAGGGTATTTCA
94183838 GTAATTTTACAATC-AATGGTATTTCGATAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAATCGAA-GGTATTTCGATAATTTTACAAATCGAGGGTATTTCA
* * * **
94183891 GTTATTTTACAATCGACGGTATTTCGATAATTTTACAAATCGAGGATATTTGG
1 GTAATTTTACAATCGAAGGTATTTCGATAATTTTACAAATCGAGGGTATTTCA
* * * * *
94183944 GTAATTTTATAAATCG-GGGCTACTTT-GGTAATTTTACAACTAG-GGGTATTTCA
1 GTAATTTTA-CAATCGAAGG-TA-TTTCGATAATTTTACAAATCGAGGGTATTTCA
94183997 GTAATTT
1 GTAATTT
94184004 GGTAAACTAA
Statistics
Matches: 187, Mismatches: 26, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
52 1 0.01
53 105 0.56
54 77 0.41
55 4 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (53 bp):
GTAATTTTACAATCGAAGGTATTTCGATAATTTTACAAATCGAGGGTATTTCA
Done.